Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3583
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 552418
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 2
Found at i:382286 original size:12 final size:12
Alignment explanation
Indices: 382269--382293 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
382259 AATATAGGGG
382269 TAAAATGGTCAT
1 TAAAATGGTCAT
382281 TAAAATGGTCAT
1 TAAAATGGTCAT
382293 T
1 T
382294 TTACCAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (12 bp):
TAAAATGGTCAT
Found at i:382757 original size:47 final size:47
Alignment explanation
Indices: 382643--383006 Score: 223
Period size: 47 Copynumber: 7.7 Consensus size: 47
382633 GTTATGTGTG
* * ** *
382643 AGCCAGTGCAAGACCATTTCTGGGACATGGCATCAG-CATTGA-GACGAG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CAATGACGAT
* * * *
382691 GGCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCAC-ATTACGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATGACGAT
* * *
382737 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCGTAGAGATGA-G-T
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACA-ATGACGAT
* * * * *
382786 -GCCAGTGCAAGACGTGTCTGGGACATGCATCGGCCTCAATGATGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATGACGAT
* * *
382832 AGCCAGTGTAAGACGTGTCTAGGACATGCATC-G--ACTAA-G-C-TT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AATGACGAT
* * * * *
382874 CATGCCAGTGTAAGACATGTCTGGGATATACATCAG-CACTTATACACGAG
1 -A-GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AAT-GACGAT
* * *
382924 AGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCCTCAATGAAGAT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACAATGACGAT
* *
382973 AACTAGTGTAAGACCATGTCTGGGACATGGCATC
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
383007 GGCAACTTAA
Statistics
Matches: 251, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 33 0.13
45 6 0.02
46 36 0.14
47 69 0.27
48 39 0.16
49 52 0.21
50 9 0.04
51 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATGACGAT
Found at i:382804 original size:94 final size:94
Alignment explanation
Indices: 382643--382957 Score: 309
Period size: 94 Copynumber: 3.4 Consensus size: 94
382633 GTTATGTGTG
* * * * * * *
382643 AGCCAGTGCAAGACCATTTCTGGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCCAGTGTAAGACGTG
*
382708 TCTGGGACATGCATCAGCCAC-ATTACGAT
65 TCTGGGACATGCATCAGCCACTATCACGAT
* *
382737 AGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGCAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCCAGTGTAAGACGTG
* * * * *
382802 TCTGGGACATGCATCGGCCTCAATGATGAT
65 TCTGGGACATGCATCAGCCACTATCACGAT
* * * * * *
382832 AGCCAGTGTAAGA-CGTGTCTAGGACAT-GCATCGACTA-AGCTTCA-TGCCAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAG-ATGAGTGCCAGTGTAAGACGTG
* * *
382893 TCTGGGATATACATCAG-CACTTATACACGAG
65 TCTGGGACATGCATCAGCCAC-TAT-CACGAT
* *
382924 AGCTAGTGTAAGACCATGTCTGGGACATAGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
382958 AGCCTCAATG
Statistics
Matches: 183, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
90 2 0.01
91 33 0.18
92 19 0.10
93 19 0.10
94 91 0.50
95 19 0.10
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCCAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACTATCACGAT
Found at i:383115 original size:33 final size:33
Alignment explanation
Indices: 383073--383138 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
383063 CAACTTTAAG
383073 AGTTAAGAAAGAGATTTAATAAGGAAAGTATGA
1 AGTTAAGAAAGAGATTTAATAAGGAAAGTATGA
383106 AGTTAAGAAAGAGATTTAATAAGGAAAGTATGA
1 AGTTAAGAAAGAGATTTAATAAGGAAAGTATGA
383139 TACTATTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (33 bp):
AGTTAAGAAAGAGATTTAATAAGGAAAGTATGA
Found at i:385049 original size:13 final size:13
Alignment explanation
Indices: 385031--385056 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
385021 ATATCTTTAG
385031 AAATTTTCTGAAA
1 AAATTTTCTGAAA
385044 AAATTTTCTGAAA
1 AAATTTTCTGAAA
385057 TAATCTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
AAATTTTCTGAAA
Found at i:385340 original size:25 final size:25
Alignment explanation
Indices: 385286--385340 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
385276 AAACATTAAA
*
385286 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAGAATCAC
*
385311 TTTAATATTAA-ATTAATAGAAT-AC
1 TTTAAT-TTAATATTAAGAGAATCAC
385335 TATTAA
1 T-TTAA
385341 GATAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAGAATCAC
Found at i:391604 original size:5 final size:5
Alignment explanation
Indices: 391594--391618 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
391584 ATAAATAGTA
391594 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
391619 GCTAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:395363 original size:40 final size:40
Alignment explanation
Indices: 395318--395396 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
395308 TTATATGAAT
395318 TAAGTTGTTCACATACGAGCTTACTAAGCTATGAAGCTTG
1 TAAGTTGTTCACATACGAGCTTACTAAGCTATGAAGCTTG
395358 TAAGTTGTTCACATACGAGCTTACTAAGCTATGAAGCTT
1 TAAGTTGTTCACATACGAGCTTACTAAGCTATGAAGCTT
395397 ACTTCGTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (40 bp):
TAAGTTGTTCACATACGAGCTTACTAAGCTATGAAGCTTG
Found at i:397708 original size:16 final size:17
Alignment explanation
Indices: 397675--397730 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 17
397665 TTCTGATATT
397675 TTTTATTTTGTCTT--TA
1 TTTTATTTT-TCTTAGTA
397691 TTTTATTTTT-TTAGTA
1 TTTTATTTTTCTTAGTA
*
397707 -TTTATTTTTCTTATTA
1 TTTTATTTTTCTTAGTA
397723 TTATTATT
1 TT-TTATT
397731 CTATTTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 2 0.06
15 10 0.29
16 16 0.47
17 1 0.03
18 5 0.15
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (17 bp):
TTTTATTTTTCTTAGTA
Found at i:397726 original size:15 final size:15
Alignment explanation
Indices: 397677--397732 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
397667 CTGATATTTT
397677 TTATTTTGTCTTTATT-
1 TTATTTT-TC-TTATTA
*
397693 TTATTTTT-TTAGTA
1 TTATTTTTCTTATTA
397707 TTTATTTTTCTTATTA
1 -TTATTTTTCTTATTA
*
397723 TTATTATTCT
1 TTATTTTTCT
397733 ATTTATTTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 4 0.12
15 18 0.53
16 12 0.35
ACGTcount: A:0.18, C:0.05, G:0.04, T:0.73
Consensus pattern (15 bp):
TTATTTTTCTTATTA
Found at i:401414 original size:31 final size:31
Alignment explanation
Indices: 401379--401442 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
401369 CCTTTTCATA
401379 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
401410 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
401441 TT
1 TT
401443 ACTGTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:401754 original size:26 final size:25
Alignment explanation
Indices: 401651--401759 Score: 125
Period size: 25 Copynumber: 4.4 Consensus size: 25
401641 CTGGAGGCCT
* *
401651 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
401675 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
401700 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
401725 AGCCCTTTTTCGGTAAACTGGGGC-AT
1 AGCCC-TTTT-GATAAACTGGGGCAAA
401751 AGCCCTTTT
1 AGCCCTTTT
401760 TGCACTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 7 0.09
24 12 0.16
25 35 0.47
26 10 0.13
27 11 0.15
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:404490 original size:24 final size:25
Alignment explanation
Indices: 404463--404514 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
404453 CGAATGAGAA
*
404463 ATCCTGTTATA-AGGCTTCT-CGAGC
1 ATCCTGTTATATA-GCTCCTGCGAGC
404487 ATCCTGTTATATAGCTCCTGCGAGC
1 ATCCTGTTATATAGCTCCTGCGAGC
404512 ATC
1 ATC
404515 ATGATCGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (25 bp):
ATCCTGTTATATAGCTCCTGCGAGC
Found at i:415886 original size:205 final size:204
Alignment explanation
Indices: 415439--415981 Score: 798
Period size: 205 Copynumber: 2.6 Consensus size: 204
415429 CTGTTTCTTT
* * * *
415439 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAGCATAAACATGCGA
1 GATTTGTTCTCTGACAATACAGAGATG-CAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGA
* *
415504 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTGGTAAGCACAAGGATGCCAAATCATCTTGGAT
65 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* *** * **
415569 CTTACTTCAGTCTAATTGTCTAAAGTTCAGATCTGCTATGTATCTGCTTTCCGTTGAAGTGGAAA
130 C-TACTTCAGTATAAACATCTAAAGGTCAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAAA
415634 TGCAAGACTTC
194 TGCAAGACTTC
*
415645 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCATCAGCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATG-CAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGA
**
415710 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATATCAAACCATCTTGGAT
65 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* * *
415775 CTACTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGAT
130 CTACTTCAGTATAAACATCTAAAGGTCAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAAAT
*
415840 GCCAGACTTC
195 GCAAGACTTC
* * * * *
415850 GATTTGCTCTTTGACAATACAGAGATGCGAAATCATCTTAGATTTACTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGC-AAATCATCTTAGATTTGCTTCAGCGTAAACACGTGA
* * *
415915 AAGCCAAATCAGCTATGTCTTTGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
65 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
415980 CT
130 CT
415982 TGCTTCAGCT
Statistics
Matches: 304, Mismatches: 32, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
204 1 0.00
205 182 0.60
206 121 0.40
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (204 bp):
GATTTGTTCTCTGACAATACAGAGATGCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAA
AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
TACTTCAGTATAAACATCTAAAGGTCAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAAATG
CAAGACTTC
Found at i:416901 original size:8 final size:8
Alignment explanation
Indices: 416888--416918 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
416878 CCTCTCCGTT
416888 TTTTTTTC
1 TTTTTTTC
416896 TTTTTTTC
1 TTTTTTTC
416904 TTTTTTTC
1 TTTTTTTC
416912 TTTTTTT
1 TTTTTTT
416919 TTTAAATCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTC
Found at i:424105 original size:15 final size:15
Alignment explanation
Indices: 424063--424112 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
424053 ATAACTTTGA
*
424063 ATGCAAATG-ATGCG
1 ATGCAAATGCATGAG
424077 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
424092 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
424106 ATGCAAA
1 ATGCAAA
424113 AAGAATATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:424156 original size:14 final size:14
Alignment explanation
Indices: 424133--424162 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
424123 ATTCTGGTTC
424133 AACTTCATTTAGAA
1 AACTTCATTTAGAA
*
424147 AACTTTATTTAGAA
1 AACTTCATTTAGAA
424161 AA
1 AA
424163 AGAATATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (14 bp):
AACTTCATTTAGAA
Found at i:431816 original size:61 final size:61
Alignment explanation
Indices: 431744--431865 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
431734 AGTCAGAAAT
431744 GGAATTGGGGCAGTCTTGGTATCCCCGAATGGCGATCATTACCCGTTTACGTGCAAGTTGG
1 GGAATTGGGGCAGTCTTGGTATCCCCGAATGGCGATCATTACCCGTTTACGTGCAAGTTGG
*
431805 GGAATTTGGGCAGTCTTGGTATCCCCGAATGGCGATCATTACCCGTTTACGTGCAAGTTGG
1 GGAATTGGGGCAGTCTTGGTATCCCCGAATGGCGATCATTACCCGTTTACGTGCAAGTTGG
431866 ACTTTGATTG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (61 bp):
GGAATTGGGGCAGTCTTGGTATCCCCGAATGGCGATCATTACCCGTTTACGTGCAAGTTGG
Found at i:434800 original size:207 final size:207
Alignment explanation
Indices: 434431--435401 Score: 1534
Period size: 207 Copynumber: 4.7 Consensus size: 207
434421 GCAGATCTGC
* * *
434431 CTGAAGCAAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCAAAGACATAGT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGACATAGC
*
434496 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCA
65 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
434561 GAGAACAAATCGAAGTTTGGCATCTCCATATTTGACGGAGAGTAGATACATAACAGATCTGGCCT
130 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCT
434626 TCAGATGTTTATA
195 TCAGATGTTTATA
*
434639 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGCAACAAAATCGAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGACATAGCT
*
434704 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
434769 AGAACAAATCAAAGTTTGGCGTCTCCATATTTGACGGAGAGCAGATACATAGCAGATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
*
434834 TAGATGTTTATA
196 CAGATGTTTATA
434846 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGACATAGCT
* * * * *
434911 TATTTGGCTTTCATGTGCTTACAATGAAGCAAATCTAAGATGATTTGGCATTTCTATATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
434976 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAAATCTGGCCTT
131 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
435041 CAGATGTTTATA
196 CAGATGTTTATA
* * *
435053 CTGAAGCAGATCCAAGATGATTTTGCATCCTTGTGTTTACAAGGAAC-AAATCGAA-ATCATAGC
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGA-CATAGC
* * * * * *
435116 TGATTTAGCTTTCATGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTTA
65 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * **
435181 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCATATCTAACCT
130 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCT
* *
435246 TCAGATGATTAGA
195 TCAGATGTTTATA
* *
435259 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAAC-AAATCAAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGACATAGCT
* * * *
435323 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
435388 AGAACAAATCGAAG
131 AGAACAAATCGAAG
435402 AAGCAGATCT
Statistics
Matches: 713, Mismatches: 48, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 273 0.38
207 432 0.61
208 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (207 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
CAGATGTTTATA
Found at i:437149 original size:28 final size:27
Alignment explanation
Indices: 437068--437153 Score: 72
Period size: 30 Copynumber: 3.1 Consensus size: 27
437058 TTTAAATACT
437068 TATATATTTT-T-TATAAA-TATAGTTA
1 TATATATTTTATCTATAAATTATA-TTA
* *
437093 TATATTATTATTA-CTATTCATATTTTATTA
1 TATA-TATT-TTATCTA-T-AAATTATATTA
437123 TCATATATTTTATCTATAAATTATATTA
1 T-ATATATTTTATCTATAAATTATATTA
437151 TAT
1 TAT
437154 TGTATATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
25 4 0.08
26 4 0.08
27 4 0.08
28 12 0.25
29 5 0.10
30 13 0.27
31 6 0.12
ACGTcount: A:0.37, C:0.05, G:0.01, T:0.57
Consensus pattern (27 bp):
TATATATTTTATCTATAAATTATATTA
Found at i:437698 original size:5 final size:5
Alignment explanation
Indices: 437677--437736 Score: 50
Period size: 5 Copynumber: 11.6 Consensus size: 5
437667 GCAAAATACT
* * * *
437677 TATTA TATTCT TATTA TTTTA TATTA TATT- TCCTTA TATTT TATTCA
1 TATTA TATT-A TATTA TATTA TATTA TATTA T-ATTA TATTA TATT-A
437724 TATTA TATTA TAT
1 TATTA TATTA TAT
437737 ATAACTCATT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
4 1 0.02
5 33 0.77
6 9 0.21
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (5 bp):
TATTA
Found at i:437823 original size:16 final size:18
Alignment explanation
Indices: 437802--437838 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
437792 TCACTTTATT
437802 TTATATT-T-TAAATATA
1 TTATATTATGTAAATATA
*
437818 TTATATTATGTCAATATA
1 TTATATTATGTAAATATA
437836 TTA
1 TTA
437839 GATGTTGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTATATTATGTAAATATA
Found at i:442629 original size:22 final size:21
Alignment explanation
Indices: 442572--442684 Score: 93
Period size: 22 Copynumber: 5.0 Consensus size: 21
442562 CCTGAGCTTA
*
442572 TGAACAGTAAGCTTTAATGAGC
1 TGAACAGTAAGCTCT-ATGAGC
*
442594 TGAAACGGTAAGCTCTATCGAGC
1 TG-AACAGTAAGCTCTAT-GAGC
*
442617 TGAACAGTAAGCTCTATTATGC
1 TGAACAGTAAGCTCTATGA-GC
*
442639 T-AAGCAGTAAACTCTATTGAGC
1 TGAA-CAGTAAGCTCTA-TGAGC
* *
442661 TAAAACAGTAAGCTCCAATGAGC
1 T-GAACAGTAAGCT-CTATGAGC
442684 T
1 T
442685 AAAAATAGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
21 3 0.04
22 35 0.47
23 33 0.44
24 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (21 bp):
TGAACAGTAAGCTCTATGAGC
Found at i:442686 original size:45 final size:43
Alignment explanation
Indices: 442574--442687 Score: 111
Period size: 45 Copynumber: 2.5 Consensus size: 43
442564 TGAGCTTATG
* * * *
442574 AACAGTAAGCTTTAATGAGCTGAAACGGTAAGCTCTATCGAGCTG
1 AACAGTAAGC-TCAATGAGCT-AAACAGTAAACTCTATCGAGCTA
* * * *
442619 AACAGTAAGCTCTATTATGCTAAGCAGTAAACTCTATTGAGCTAA
1 AACAGTAAGCTCAATGA-GCTAAACAGTAAACTCTATCGAGCT-A
442664 AACAGTAAGCTCCAATGAGCTAAA
1 AACAGTAAGCT-CAATGAGCTAAA
442688 AATAGTAAGC
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
44 22 0.40
45 29 0.53
46 4 0.07
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (43 bp):
AACAGTAAGCTCAATGAGCTAAACAGTAAACTCTATCGAGCTA
Found at i:442688 original size:23 final size:22
Alignment explanation
Indices: 442574--442687 Score: 79
Period size: 23 Copynumber: 5.1 Consensus size: 22
442564 TGAGCTTATG
**
442574 AACAGTAAGCTTTAATGAGCTGA
1 AACAGTAAGCTCCAATGAGCT-A
* * *
442597 AACGGTAAGCT-CTATCGAGCTG
1 AACAGTAAGCTCCAAT-GAGCTA
* *
442619 AACAGTAAGCT-CTATTATGCTA
1 AACAGTAAGCTCCAATGA-GCTA
* * * *
442641 AGCAGTAAACTCTATTGAGCTAA
1 AACAGTAAGCTCCAATGAGCT-A
442664 AACAGTAAGCTCCAATGAGCTA
1 AACAGTAAGCTCCAATGAGCTA
442686 AA
1 AA
442688 AATAGTAAGC
Statistics
Matches: 70, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.01
22 34 0.49
23 35 0.50
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (22 bp):
AACAGTAAGCTCCAATGAGCTA
Found at i:442707 original size:24 final size:23
Alignment explanation
Indices: 442657--442708 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
442647 AAACTCTATT
*
442657 GAGCTAAAACAGTAAGCTCCAAT
1 GAGCTAAAACAGTAAGCTCCAAC
* **
442680 GAGCTAAAAATAGTAAGCTCTTAC
1 GAGCT-AAAACAGTAAGCTCCAAC
442704 GAGCT
1 GAGCT
442709 GATATTTCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (23 bp):
GAGCTAAAACAGTAAGCTCCAAC
Found at i:444621 original size:18 final size:20
Alignment explanation
Indices: 444593--444633 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
444583 ATCCATACTA
444593 AACCTTTTTG-CTTAAAATC
1 AACCTTTTTGCCTTAAAATC
444612 AACC-TTTTGCCTTAAAATC
1 AACCTTTTTGCCTTAAAATC
444631 AAC
1 AAC
444634 TCCGTTACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (20 bp):
AACCTTTTTGCCTTAAAATC
Found at i:444774 original size:27 final size:27
Alignment explanation
Indices: 444736--444794 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
444726 TTTACAGATC
444736 ACATAAATAGGCATTTCATGTCATATA
1 ACATAAATAGGCATTTCATGTCATATA
444763 ACATAAATAGGCATTTCATGTCATATA
1 ACATAAATAGGCATTTCATGTCATATA
444790 ACATA
1 ACATA
444795 TTGTCTCCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (27 bp):
ACATAAATAGGCATTTCATGTCATATA
Found at i:446086 original size:25 final size:25
Alignment explanation
Indices: 446058--446114 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
446048 TGCTCTCACA
446058 AGCTGTGAATCGAGAAGCTCATACG
1 AGCTGTGAATCGAGAAGCTCATACG
* * *
446083 AGCTATAAATCGGGAAGCTCATACG
1 AGCTGTGAATCGAGAAGCTCATACG
446108 AGCTGTG
1 AGCTGTG
446115 GTCTATCCGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (25 bp):
AGCTGTGAATCGAGAAGCTCATACG
Found at i:463896 original size:43 final size:43
Alignment explanation
Indices: 463821--463928 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 43
463811 CATATCGATA
* * * *
463821 CCAATGTCCCAAACATGGCCTTACACGAAATCATATA-ACGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCACA-AGACAATG
* * * **
463864 TCAATGTCCCAGACATGGTCTTTCTCTTAATCACAAGACAATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCACAAGACAATG
*
463907 CCAATGTCTCAGACATGGTCTT
1 CCAATGTCCCAGACATGGTCTT
463929 GCATGTAAAC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 1 0.02
43 52 0.98
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACACGAAATCACAAGACAATG
Found at i:468225 original size:40 final size:40
Alignment explanation
Indices: 468119--468303 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
468109 TTGAATGATG
* * * *
468119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
468159 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
468198 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
468238 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
468279 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
468304 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 25 0.19
40 100 0.78
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:479516 original size:27 final size:27
Alignment explanation
Indices: 479485--479662 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
479475 TAAATTGTAC
479485 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
479512 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
479538 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
479566 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
479594 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
479621 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
479648 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
479663 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:479599 original size:82 final size:81
Alignment explanation
Indices: 479486--479641 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
479476 AAATTGTACA
* *
479486 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
479550 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
479567 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
479632 TGCGAGTTGA
65 TGCGAATTGA
479642 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:479653 original size:82 final size:81
Alignment explanation
Indices: 479482--479662 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
479472 GATTAAATTG
* *
479482 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
479547 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
479563 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
479627 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
479645 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
479663 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:486300 original size:41 final size:40
Alignment explanation
Indices: 486197--486390 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
486187 ATAGCAAATC
* * *
486197 GCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
486237 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* * *
486277 GCACAAAATGCCTTCGAGTCTTAGCCCGGATATCGTCACTA
1 GCAC-AAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
486318 GCGCAAATGCCTTCGGGACTTAACCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
486358 GCACAAAGTGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAA-TGCCTTCGGGACTTAGCCCGGATAT
486391 CATCCGAATA
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 79 0.57
41 59 0.43
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:486325 original size:81 final size:81
Alignment explanation
Indices: 486197--486391 Score: 311
Period size: 81 Copynumber: 2.4 Consensus size: 81
486187 ATAGCAAATC
* * * *
486197 GCAC-AAATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 GCACAAAATGCCTTCGAGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGGGACTTAAC
486261 CCGGATATAGTCACTA
66 CCGGATATAGTCACTA
* *
486277 GCACAAAATGCCTTCGAGTCTTAGCCCGGATATCGTCACTAGCGCAAATGCCTTCGGGACTTAAC
1 GCACAAAATGCCTTCGAGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGGGACTTAAC
486342 CCGGATATAGTCACTA
66 CCGGATATAGTCACTA
* *
486358 GCACAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 GCACAAAATGCCTTCGAGTCTTAGCCCGGATATC
486392 ATCCGAATAA
Statistics
Matches: 106, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 4 0.04
81 102 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
GCACAAAATGCCTTCGAGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGGGACTTAAC
CCGGATATAGTCACTA
Found at i:498500 original size:27 final size:27
Alignment explanation
Indices: 498465--498534 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
498455 ATTTTACTCT
498465 TATAAGGTAAAATGACCAAAATA-CCC
1 TATAAGGTAAAATGACCAAAATACCCC
* * *
498491 TCATAGGGTAAAATGACTATAATACCCC
1 T-ATAAGGTAAAATGACCAAAATACCCC
*
498519 TGTAAGGTAAAATGAC
1 TATAAGGTAAAATGAC
498535 AGATTTGTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.03
27 32 0.86
28 4 0.11
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (27 bp):
TATAAGGTAAAATGACCAAAATACCCC
Found at i:501642 original size:30 final size:30
Alignment explanation
Indices: 501608--501668 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
501598 TCCTTAACTA
501608 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
501638 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
501668 A
1 A
501669 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:504566 original size:40 final size:40
Alignment explanation
Indices: 504468--504646 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
504458 ACCCAAGTAT
* *
504468 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
504507 CTTC-GGTC-TAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
504545 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
504585 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
504625 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
504647 CATCGAATAA
Statistics
Matches: 126, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
37 3 0.02
38 27 0.21
39 8 0.06
40 88 0.70
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:514463 original size:76 final size:79
Alignment explanation
Indices: 514323--514542 Score: 283
Period size: 76 Copynumber: 2.8 Consensus size: 79
514313 TTGAATGATG
* * *
514323 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTA-CATATCCGGGCTAAG-TCCCGAAGGCAT
*
514386 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
514403 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-A-ATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACATATCCGGGCTAAGTCCCGAAGGCATTTG
*
514465 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* *
514479 TCCGGG-TAAGTCCCGAA-GCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-ATATCCGGGCTAAGTCCCGAAGGCATTT
514542 G
65 G
514543 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 14
0.84 0.06 0.09
Matches are distributed among these distances:
75 21 0.17
76 47 0.38
77 2 0.02
78 24 0.19
79 13 0.10
80 18 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:514556 original size:40 final size:40
Alignment explanation
Indices: 514323--514542 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
514313 TTGAATGATG
* * * *
514323 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
514363 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
514403 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAG-T--TAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
514439 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
514479 TCCGGG-TAAGTCCCGAA-GCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
514518 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
514543 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 11, Indels: 20
0.84 0.06 0.11
Matches are distributed among these distances:
36 13 0.08
37 20 0.13
38 26 0.16
39 42 0.26
40 50 0.31
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:519664 original size:40 final size:40
Alignment explanation
Indices: 519586--519809 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
519576 ACCCAAGTAT
* *
519586 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
519625 CTTCGGGTCTTAGCCCGGATATAGTCACTAGTATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
519665 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
519705 CTTCGGGACTTAGCCC-GAGTATAG-CAACTACTCGCACAAGTGC
1 CTTCGGGACTTAGCCCGGA-TATAGTC-ACTA---GCACAAATGC
* * *
519748 CTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
519788 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
519810 CATCCGAATA
Statistics
Matches: 158, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 14 0.09
40 109 0.69
41 1 0.01
43 33 0.21
44 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:519783 original size:83 final size:80
Alignment explanation
Indices: 519586--519809 Score: 276
Period size: 83 Copynumber: 2.8 Consensus size: 80
519576 ACCCAAGTAT
* * * *
519586 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
519650 CACTAGTATGAATGC
66 CACTAGCATCAATGC
* *
519665 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC-GAGTATAG
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAG
519729 -CAACTACTCGCA-CAAGTGC
65 TC-ACTA---GCATCAA-TGC
* *
519748 CTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
519810 CATCCGAATA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
79 15 0.12
80 46 0.37
82 2 0.02
83 60 0.48
84 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCATCAATGC
Found at i:528466 original size:40 final size:41
Alignment explanation
Indices: 528406--528626 Score: 289
Period size: 40 Copynumber: 5.6 Consensus size: 41
528396 TATTCGAATG
* *
528406 ATATCCGGGCTAA-TTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
528446 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
528486 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
528526 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
528566 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
528606 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
528627 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.01
39 16 0.10
40 142 0.87
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:528894 original size:22 final size:22
Alignment explanation
Indices: 528854--528895 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
528844 GAATGTGCAT
*
528854 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
528876 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
528896 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:531721 original size:23 final size:23
Alignment explanation
Indices: 531694--531739 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
531684 GACTCACTAA
531694 GAAATCTAGACATATAAACTATG
1 GAAATCTAGACATATAAACTATG
531717 GAAATCTAGACATATAAACTATG
1 GAAATCTAGACATATAAACTATG
531740 ACTTATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (23 bp):
GAAATCTAGACATATAAACTATG
Found at i:532822 original size:55 final size:53
Alignment explanation
Indices: 532680--532873 Score: 160
Period size: 55 Copynumber: 3.6 Consensus size: 53
532670 TTACGATTGT
* * * *
532680 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGT
1 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGC
* ** * *
532733 CATG-CTTTGGCATGGTCTTACATGTGATAT--TTGCCTTATCGTAGTTTATCAATGC
1 CATGTC-TTGACATGGTCTTACA--TGATATCCTTGCCTTAT-G-AACTCACCAATGC
* * * *
532788 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGC
1 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGC
* * * *
532842 CATGACTTGGCATGGTCTTACTTGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGATATCCTT
532874 AAACCCCAAT
Statistics
Matches: 111, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
52 1 0.01
53 32 0.29
54 38 0.34
55 39 0.35
56 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGC
Found at i:534344 original size:37 final size:37
Alignment explanation
Indices: 534294--534372 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
534284 TTATTACGAA
* * *
534294 GTCTTACCCGGACATAA-TCTCCATACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
534331 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
534368 GTCTT
1 GTCTT
534373 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:534503 original size:47 final size:47
Alignment explanation
Indices: 534434--534742 Score: 591
Period size: 47 Copynumber: 6.6 Consensus size: 47
534424 AATATTCTCG
534434 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
534481 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
534528 TATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
534575 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
534622 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
534669 TATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
1 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
534716 CATTAGGCCTTATCACATATATACACT
1 CATTAGGCCTTATCACATATATACACT
534743 GTCTTGGCTG
Statistics
Matches: 256, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 256 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:535513 original size:16 final size:16
Alignment explanation
Indices: 535492--535529 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
535482 GAGCTTAGAA
535492 CATATCATGGCCACAT
1 CATATCATGGCCACAT
535508 CATATCATGGCCACAT
1 CATATCATGGCCACAT
535524 CATATC
1 CATATC
535530 TTATTAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.26
Consensus pattern (16 bp):
CATATCATGGCCACAT
Found at i:537950 original size:40 final size:40
Alignment explanation
Indices: 537893--538075 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
537883 CCAGCATGAT
* * *
537893 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
537933 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * * *
537973 TGCTCTTC-GAGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGA-ACTTAGCCCGGATATA-TCACTAGCACGAA
* * *
538014 TGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACGAA
* *
538054 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
538076 CATCATTCGA
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 2 0.02
40 96 0.82
41 19 0.16
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:537979 original size:80 final size:80
Alignment explanation
Indices: 537880--538037 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 80
537870 CGAATACACG
* * * * *
537880 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCACGAATGCTCTTCGGA
1 TCACCAGCATGAATGCTCTTCGAGACTTAGCACGGATATAGTAACTAGCACCAATGC-CTTCGGA
537944 ACTTAGCCCGGATACA
65 ACTTAGCCCGGATACA
* * * * *
537960 TCACTAGCATGAATGCTCTTCGAGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGAT
1 TCACCAGCATGAATGCTCTTCGAGACTTAGCACGGATATAGTAACTAGCACCAATGCCTTCGGAA
*
538025 CTTAGTCCGGATA
66 CTTAGCCCGGATA
538038 TGGTCACTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 53 0.80
81 13 0.20
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCGAGACTTAGCACGGATATAGTAACTAGCACCAATGCCTTCGGAA
CTTAGCCCGGATACA
Found at i:538422 original size:29 final size:29
Alignment explanation
Indices: 538388--538459 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
538378 ATCAACCACG
* *
538388 CACACTTAGTGCCATGTACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACCCA
* *
538417 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCA
538446 CACACTTAGTGCCA
1 CACACTTAGTGCCA
538460 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCA
Found at i:540414 original size:37 final size:37
Alignment explanation
Indices: 540364--540442 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
540354 TTATTACGAA
* *
540364 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
540401 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
540438 GTCTT
1 GTCTT
540443 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:540639 original size:47 final size:47
Alignment explanation
Indices: 540561--541095 Score: 928
Period size: 47 Copynumber: 11.4 Consensus size: 47
540551 CCCTTCGGGA
* * * * * * *
540561 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
540608 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
540655 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
540702 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
540748 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
540795 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
540842 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
540889 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
540936 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
540983 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
541030 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
541077 CTTATCACATATATACACT
1 CTTATCACATATATACACT
541096 GTCTTGGCTG
Statistics
Matches: 466, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
46 45 0.10
47 421 0.90
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:544852 original size:17 final size:18
Alignment explanation
Indices: 544830--544873 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
544820 ACATTTGGTC
*
544830 ATATAAATATAC-AACTT
1 ATATAAATATACAAACCT
*
544847 ATATAAATACACAAACCT
1 ATATAAATATACAAACCT
544865 AT-TAAATAT
1 ATATAAATAT
544874 TCAATCACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.32
Consensus pattern (18 bp):
ATATAAATATACAAACCT
Done.