Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1470
Parameters: 2 7 7 80 10 50 1000
Length:  123034

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14150--14190
15
2.8
14
85
10
55
12
0
2
85
0.70
24675--24700
8
3.2
8
100
0
52
11
0
0
88
0.52
27318--27368
12
4.2
12
80
12
59
76
0
1
21
0.88
27318--27363
18
2.6
18
89
6
67
78
0
2
19
0.86
33258--33290
13
2.6
13
85
4
50
42
3
15
39
1.62
33904--33960
19
3.0
19
76
0
60
15
17
29
36
1.91
39985--40107
10
13.7
9
68
24
73
64
1
1
32
1.13
39983--40064
19
4.5
19
73
11
64
63
2
1
32
1.15
39983--40064
27
3.0
27
75
18
80
63
2
1
32
1.15
39996--40098
35
2.9
34
80
13
95
65
1
0
32
1.11
39983--40107
54
2.3
54
76
15
125
63
2
1
32
1.17
41132--41175
22
2.0
22
100
0
88
36
13
9
40
1.76
48971--49079
10
11.7
9
71
16
71
31
1
4
62
1.26
48870--49079
9
22.8
9
67
18
87
32
2
4
60
1.32
49570--49607
18
2.1
18
85
9
51
52
13
2
31
1.54
49690--49743
20
2.8
20
81
13
60
51
9
0
38
1.34
49769--49820
11
5.3
9
77
22
52
63
1
3
30
1.23
49762--49803
19
2.3
19
88
8
61
66
2
2
28
1.16
50830--50870
3
13.7
3
100
0
82
31
0
0
68
0.90
52256--52287
5
6.2
5
92
7
55
3
56
40
0
1.15
52330--52394
19
2.9
23
84
13
75
67
6
0
26
1.13
52622--52675
17
2.8
21
73
23
64
14
24
18
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56112--56149
13
2.9
13
88
0
58
65
10
13
10
1.47
59440--59491
26
2.0
26
100
0
104
23
11
30
34
1.90
59907--59944
19
2.0
19
89
0
58
31
0
23
44
1.54
59904--59960
19
2.7
21
76
15
55
31
0
24
43
1.54
62449--62483
18
1.9
18
88
0
52
60
8
8
22
1.54
64043--64110
25
2.7
25
80
8
75
14
7
8
69
1.36
64043--64095
26
2.1
26
85
3
72
13
7
9
69
1.35
76018--76188
46
3.7
47
74
13
174
30
27
19
22
1.98
76023--76193
93
1.8
93
90
5
274
30
28
19
21
1.98
76116--76201
46
1.9
45
85
4
120
31
29
18
20
1.97
76612--76672
30
2.0
30
90
0
95
31
24
8
36
1.85
90733--90757
11
2.3
11
100
0
50
8
16
16
60
1.58
93620--93652
15
2.2
15
89
10
50
54
0
0
45
0.99
95746--95804
18
3.2
17
77
17
57
16
3
6
72
1.20
95744--95805
19
3.3
19
78
17
67
17
3
6
72
1.19
96759--96791
17
2.0
17
88
5
50
27
0
3
69
1.03
99669--100092
99
4.2
101
87
5
584
27
0
13
58
1.40
99669--100122
201
2.2
203
84
6
614
27
0
12
59
1.39
105712--105747
18
2.1
17
89
5
54
0
30
2
66
1.06
110769--110825
17
3.5
17
76
11
57
63
0
1
35
1.05
111308--111405
18
5.5
18
86
4
137
36
12
11
39
1.78
111308--111414
35
3.0
35
93
4
169
37
13
10
39
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111812--112150
83
4.1
83
94
0
572
26
20
20
32
1.97
112074--112553
119
4.0
119
93
1
793
30
18
17
33
1.94
112535--112832
127
2.4
125
87
9
418
27
23
16
32
1.96
113701--113741
21
2.0
21
90
0
64
4
19
0
75
0.98
113707--113759
20
2.6
21
85
8
74
3
11
0
84
0.73
113710--113758
6
7.8
6
82
13
55
2
12
0
85
0.68
113710--113759
12
3.9
12
82
12
64
2
12
0
86
0.67
122260--122437
27
6.6
27
85
3
214
30
28
14
26
1.95
122281--122436
82
1.9
81
89
3
242
30
28
14
26
1.95

Tables:   1

The End!