genome.fa.s406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold848
Parameters: 2 7 7 80 10 50 1000
Length:  97204

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2093--2322	50	4.6	50	78	7	225	25	18	25	30	1.98
2093--2334	101	2.4	98	82	5	263	25	18	25	30	1.98
2422--2473	27	2.0	26	81	11	61	38	1	23	36	1.66
6796--7034	31	7.7	31	93	2	410	28	26	15	29	1.96
7058--7221	42	3.9	42	98	0	301	34	18	15	32	1.92
7247--7316	25	2.8	25	86	4	97	24	22	27	25	2.00
8242--8339	27	3.6	27	78	13	92	34	9	14	41	1.77
8329--8455	27	4.7	27	82	7	150	30	8	20	40	1.83
8332--8455	54	2.3	54	84	2	169	29	8	20	40	1.83
8331--8497	81	2.1	80	80	8	187	30	11	20	37	1.88
8332--8488	54	2.9	53	80	3	152	30	11	19	38	1.87
8487--8619	27	4.9	27	89	3	178	40	6	22	30	1.80
12857--12923	20	3.3	20	89	0	107	32	13	20	32	1.92
12974--13046	23	3.1	23	86	7	103	30	20	19	30	1.97
12973--13067	24	4.0	24	81	12	115	29	21	21	28	1.98
20873--20932	14	4.3	13	81	12	57	11	5	40	43	1.63
20885--20934	14	3.6	14	84	7	66	14	6	40	40	1.70
20959--20990	15	2.1	15	94	0	55	65	0	6	28	1.16
20965--21045	37	2.2	37	97	0	153	56	0	2	40	1.12
22935--23542	47	13.2	47	83	8	725	28	29	8	32	1.87
22935--23542	141	4.4	140	88	6	882	28	29	8	32	1.87
23269--23334	34	1.9	34	100	0	132	31	30	6	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23222--23381	81	2.0	81	94	0	284	28	28	10	32	1.89
23346--23470	25	5.2	24	64	14	71	31	28	6	34	1.82
23034--23525	269	1.8	269	93	1	853	28	28	9	33	1.88
26552--26705	28	5.5	28	68	6	123	28	32	19	19	1.96
26552--26730	56	3.2	56	97	0	340	29	31	19	19	1.97
26579--26727	28	5.3	28	68	12	126	30	28	19	21	1.98
26944--27170	40	5.7	40	93	0	382	25	29	23	20	1.99
29286--30002	47	15.3	47	93	0	1166	28	29	9	33	1.88
33013--33054	17	2.6	16	82	10	50	26	33	0	40	1.56
35846--35894	23	2.1	23	92	0	80	34	14	14	36	1.86
36018--36695	241	2.8	240	96	0	1239	34	17	14	33	1.90
36815--36942	9	13.6	9	70	9	85	45	19	1	33	1.60
36832--36909	39	2.0	39	89	0	120	43	20	1	34	1.60
41716--41793	31	2.5	31	93	2	140	26	25	17	29	1.98
41999--42082	26	3.3	26	88	9	122	29	23	17	28	1.97
42890--42954	27	2.4	27	81	0	76	21	21	18	38	1.93
42907--42967	27	2.2	28	82	5	81	18	16	24	40	1.90
43007--43088	27	3.0	28	76	15	82	32	7	17	42	1.76
43068--43236	55	3.1	54	74	11	148	27	7	22	42	1.79
43215--43398	54	3.4	54	89	0	233	38	8	22	30	1.84
43188--43395	81	2.6	81	83	0	263	37	8	22	32	1.84
43215--43371	27	5.8	27	90	0	242	39	8	22	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43052--43410	27	13.2	27	79	5	159	33	7	21	37	1.82
46425--46540	43	2.7	43	93	0	142	24	29	17	29	1.97
47958--48044	27	3.3	27	91	1	131	41	22	6	28	1.80
47973--48060	27	3.3	27	88	3	115	42	20	7	29	1.80
48029--48152	54	2.3	55	77	6	137	35	19	17	27	1.94
48056--48170	27	4.3	27	82	2	133	33	17	20	27	1.95
48055--48168	54	2.1	54	83	3	149	35	15	21	28	1.94
48000--48171	27	6.4	27	76	9	84	36	18	16	27	1.93
48374--48428	25	2.3	23	81	6	65	32	21	21	23	1.98
50099--50214	6	18.8	6	70	11	74	48	12	18	20	1.81
50111--50202	31	3.0	31	91	0	148	45	11	20	21	1.83
50620--50975	27	13.2	26	84	5	338	41	7	21	30	1.80
50631--50975	54	6.4	54	85	2	460	40	7	20	30	1.81
50620--50975	81	4.4	81	85	0	487	41	7	21	30	1.80
50631--50975	108	3.2	107	89	2	512	40	7	20	30	1.81
50952--51121	54	3.2	54	77	9	186	29	9	20	40	1.84
50631--51056	108	3.9	108	85	3	432	38	8	20	32	1.83
50952--51121	81	2.1	80	80	7	184	29	9	20	40	1.84
50952--51121	27	6.3	27	76	10	143	29	9	20	40	1.84
53089--53231	6	23.3	6	71	14	96	48	12	18	19	1.80
53098--53208	43	2.6	43	88	0	141	47	11	20	19	1.80
53098--53231	37	3.5	37	75	11	124	49	11	19	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53100--53231	43	3.2	42	76	12	130	49	12	18	19	1.79
53448--53499	27	2.0	26	84	3	68	34	21	26	17	1.95
53735--54009	27	10.2	27	85	0	298	39	7	21	31	1.81
54005--54155	54	2.8	52	75	8	142	26	10	24	38	1.88
54036--54155	27	4.5	27	75	9	102	27	10	22	40	1.86
56336--56500	27	6.1	27	82	2	188	38	20	8	32	1.82
56336--56500	54	3.1	53	89	1	240	38	20	8	32	1.82
56482--56569	27	3.3	27	83	0	113	34	18	20	27	1.96
60808--60950	40	3.6	40	95	0	259	28	27	20	23	1.99
60775--60952	80	2.2	80	91	3	279	26	28	22	23	1.99
62672--62743	25	3.0	24	78	13	67	29	23	22	25	1.99
69165--69226	22	2.8	22	75	0	61	40	24	17	17	1.91
69583--69634	27	1.9	27	84	7	70	32	11	15	40	1.83
69591--69718	53	2.4	55	80	7	147	33	8	17	40	1.80
69591--69718	27	4.8	27	80	7	136	33	8	17	40	1.80
77646--77755	42	2.6	42	80	7	125	28	20	22	29	1.98
85663--85770	37	2.9	37	93	1	173	27	30	18	23	1.98
87578--87762	40	4.7	40	82	7	218	23	21	28	26	1.99
87579--87760	79	2.3	81	83	7	230	24	21	28	25	1.99
87579--87785	79	2.6	79	78	12	228	25	21	27	26	1.99

Tables:   1

The End!