genome.fa.s409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold416
Parameters: 2 7 7 80 10 50 1000
Length:  67492

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189--248	15	4.1	14	80	8	66	13	20	13	53	1.72
2810--2856	19	2.3	20	82	10	60	36	0	14	48	1.44
3208--3693	50	9.6	50	81	4	487	25	17	26	30	1.97
3440--3520	24	3.3	24	66	24	69	23	13	32	30	1.93
3208--3693	151	3.2	150	84	1	569	25	17	26	30	1.97
3264--3693	201	2.1	201	89	0	671	25	16	26	30	1.97
3902--3933	16	2.0	16	93	0	55	46	0	18	34	1.49
4258--4583	180	1.8	180	92	1	555	38	10	19	31	1.86
11580--11605	13	2.0	13	100	0	52	23	30	23	23	1.99
18702--18756	24	2.2	25	80	3	67	45	14	16	23	1.84
20538--20601	24	2.7	24	87	0	92	29	35	12	21	1.91
20664--20748	32	2.7	32	81	0	98	24	12	23	38	1.90
20812--20856	23	2.0	23	81	0	54	33	11	20	35	1.88
31936--32193	40	6.5	38	77	9	191	24	27	21	26	1.99
31969--32193	80	2.8	78	80	9	233	24	27	21	25	1.99
32125--32202	40	1.9	41	82	10	97	26	28	20	24	1.99
39850--40201	49	7.6	47	89	6	497	33	7	29	28	1.86
43616--43642	13	2.1	13	100	0	54	0	22	37	40	1.54
45168--45392	40	5.7	40	82	6	242	25	28	21	25	1.99
45324--45401	40	1.9	41	82	10	97	26	28	20	24	1.99
49837--49897	30	2.0	30	83	0	77	31	22	8	37	1.84
50725--50908	27	6.9	27	74	6	113	38	20	7	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50751--50908	54	2.9	54	76	10	128	37	20	8	33	1.82
50757--50909	53	2.9	53	75	6	148	38	21	7	32	1.82
50900--51250	27	13.0	27	88	0	497	35	19	21	23	1.96
50900--51249	81	4.3	81	92	0	549	35	19	21	24	1.96
51874--51925	27	2.0	26	84	3	68	17	26	21	34	1.95
53257--53331	36	2.1	36	85	5	98	28	29	18	24	1.98
55591--55681	32	2.8	32	79	0	110	39	24	12	24	1.89
55736--55799	24	2.7	24	87	0	92	21	12	35	29	1.91
57361--57481	64	1.9	64	84	0	161	21	19	21	38	1.94
64732--64757	13	2.0	13	100	0	52	23	23	30	23	1.99

Tables:   1

The End!