genome.fa.s411.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1397
Parameters: 2 7 7 80 10 50 1000
Length:  60165

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6749--6926	27	6.6	27	84	3	205	29	28	15	26	1.96
6770--6925	82	1.9	81	88	3	233	29	28	15	26	1.96
8799--8909	30	3.8	30	69	17	81	64	0	28	6	1.17
18105--18163	29	2.0	31	80	12	70	40	0	18	40	1.51
27791--27985	49	3.9	49	82	2	228	29	26	17	26	1.98
27791--27983	100	1.9	100	93	0	332	30	25	18	26	1.98
28212--28265	27	2.0	27	88	0	81	38	12	7	40	1.72
30554--30753	28	7.2	28	84	1	267	28	22	10	39	1.87
34108--34199	27	3.4	27	90	3	132	26	20	9	43	1.83
34232--34354	27	4.6	26	77	8	115	40	21	8	29	1.83
34310--34413	27	3.8	27	76	15	97	43	18	8	29	1.80
35369--35414	25	1.9	24	82	8	58	28	21	23	26	1.99
35535--35626	42	2.2	42	84	0	112	30	14	21	33	1.93
43685--43753	27	2.6	27	90	0	111	33	18	20	27	1.96
43746--44052	27	11.4	27	77	8	162	38	20	10	30	1.86
43738--43886	53	2.8	52	79	7	129	39	22	9	28	1.85
44288--44409	41	3.0	41	87	0	181	20	22	28	28	1.98
44552--44616	22	3.0	22	75	8	69	20	21	24	33	1.97
44609--44670	27	2.3	27	91	0	97	25	17	17	38	1.92
44848--44892	22	2.0	22	91	0	72	17	22	17	42	1.89
47025--47248	79	2.8	79	85	6	292	25	27	22	24	2.00
47025--47248	40	5.7	40	87	6	280	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55115--55210	40	2.5	37	82	14	108	26	26	21	26	2.00

Tables:   1

The End!