genome.fa.s412.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold362
Parameters: 2 7 7 80 10 50 1000
Length:  59669

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4823--5005	79	2.3	81	84	7	232	25	27	22	24	2.00
4821--5005	40	4.7	40	83	7	234	25	28	22	23	2.00
12972--13154	79	2.3	81	83	7	223	25	27	22	24	2.00
12970--13154	40	4.7	40	82	7	225	25	28	22	23	1.99
15215--15285	3	23.7	3	100	0	142	33	0	0	66	0.92
25758--25806	24	2.0	24	100	0	98	51	0	12	36	1.40
28448--28476	14	2.1	14	100	0	58	20	13	37	27	1.91
29683--29721	18	2.2	18	95	0	69	20	30	33	15	1.94
31498--31710	101	2.1	101	88	0	309	27	23	16	31	1.96
33645--33686	5	8.4	5	80	19	52	42	0	0	57	0.99
33640--33686	15	3.2	14	80	16	51	44	0	0	55	0.99
33816--33862	19	2.5	19	86	6	69	72	4	14	8	1.24
33816--33870	19	2.9	19	83	5	58	70	5	14	9	1.30
35633--35828	27	7.3	27	86	1	250	30	22	7	39	1.82
35635--35828	54	3.6	54	88	0	282	29	22	7	39	1.82
35633--35828	81	2.4	81	89	0	286	30	22	7	39	1.82
35627--35946	27	11.9	27	81	3	142	33	21	8	36	1.84
35672--35856	81	2.3	81	84	0	235	31	22	8	38	1.83
35627--35909	54	5.3	54	83	1	210	33	21	8	37	1.83
35821--35946	54	2.3	54	86	2	164	41	19	8	30	1.82
35931--36072	27	5.3	27	84	3	169	37	18	18	26	1.93
35821--35976	81	1.9	81	85	12	214	39	19	10	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35821--36071	81	3.1	78	80	8	213	39	17	14	28	1.89
36277--36371	25	3.8	25	95	0	163	25	27	23	24	2.00
36277--36407	25	5.2	24	85	8	129	29	23	22	24	1.99
41252--41381	27	4.8	27	86	7	183	39	19	9	32	1.83
41252--41381	54	2.4	54	93	2	217	39	19	9	32	1.83
41255--41420	27	6.2	26	84	6	127	40	17	11	30	1.85
42086--42126	22	1.9	21	95	5	73	24	4	46	24	1.72
45887--45956	27	2.6	27	95	2	113	31	28	12	27	1.93
45887--45984	28	3.5	28	90	2	135	31	28	13	26	1.94
53926--53995	27	2.6	27	95	2	113	31	28	12	27	1.93
53926--54023	28	3.5	28	90	2	135	31	28	13	26	1.94
57878--57920	12	3.5	12	84	12	52	44	0	2	53	1.13
57930--57976	19	2.5	19	89	6	69	72	2	14	10	1.21
57945--57984	19	2.1	19	85	0	53	72	5	15	7	1.24
58003--58039	17	2.2	17	90	0	56	75	0	24	0	0.80
58003--58039	8	4.3	9	83	10	51	75	0	24	0	0.80
59246--59359	18	6.2	18	75	8	95	34	9	17	38	1.83
59315--59365	18	2.8	18	82	5	59	39	7	13	39	1.74

Tables:   1

The End!