Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  59586

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4417--4639
40
5.6
40
83
3
218
25
28
21
24
1.99
4571--4648
40
1.9
41
82
10
97
26
28
21
23
1.99
8977--9032
15
4.1
13
76
14
51
42
0
1
55
1.10
8981--9023
15
2.8
16
79
10
54
44
0
2
53
1.13
8918--9139
120
1.9
120
98
0
426
42
1
6
49
1.38
8920--9107
61
3.1
60
70
14
188
42
1
6
48
1.39
9101--9142
15
2.7
16
82
14
52
45
0
2
52
1.13
9092--9133
15
2.9
15
82
10
52
47
0
0
52
1.00
9287--9377
45
2.0
44
87
2
128
34
28
5
31
1.80
9356--9425
16
4.4
16
94
0
104
34
34
1
30
1.67
13632--13693
24
2.6
24
97
0
115
32
19
12
35
1.90
14061--14112
24
2.2
24
89
0
77
55
9
1
32
1.43
14352--14404
24
2.2
24
89
0
79
37
3
9
49
1.53
14352--14415
24
2.7
24
85
4
76
37
3
10
48
1.54
15061--15108
17
2.9
17
76
14
55
41
0
0
58
0.98
15650--15689
19
2.2
18
86
13
55
57
7
2
32
1.40
18872--18912
5
8.2
5
83
0
55
80
0
4
14
0.87
19748--19906
26
6.5
26
72
17
128
33
5
6
54
1.49
19748--19906
71
2.2
77
80
13
187
33
5
6
54
1.49
19732--20027
51
6.2
48
71
18
199
33
4
5
56
1.44
19786--20036
73
3.4
73
75
11
189
33
4
5
55
1.45
23921--23965
22
2.0
22
91
0
72
26
15
6
51
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32264--32469
74
2.8
74
87
2
272
29
15
19
35
1.92
32432--32699
101
2.8
94
83
8
321
25
16
18
38
1.92
32489--32700
101
2.1
103
90
2
338
25
16
16
42
1.87
32338--32835
268
1.9
264
84
6
673
26
16
19
37
1.92
34476--34531
22
2.6
20
81
15
67
28
3
1
66
1.19
34690--34965
22
12.3
21
67
22
97
33
3
5
56
1.42
34719--34972
25
10.5
25
73
18
150
33
4
5
55
1.44
34719--35029
46
6.5
48
69
19
145
33
5
6
55
1.47
36418--37041
315
2.0
315
94
0
1106
38
13
12
35
1.83
37811--37858
25
1.9
25
83
8
62
27
25
2
45
1.64
46884--46955
28
2.4
31
79
9
78
25
2
4
68
1.21
49081--49442
47
7.6
47
90
3
544
29
29
8
33
1.86
49081--49442
96
3.8
96
94
0
602
29
29
8
33
1.86
49081--49442
143
2.5
141
91
3
562
29
29
8
33
1.86
53947--54371
46
9.3
46
82
12
472
29
29
8
32
1.86
53936--54371
93
4.8
94
84
10
545
29
28
8
33
1.86
57311--57714
47
8.6
47
85
8
518
29
28
7
33
1.85
57311--57714
96
4.3
96
88
5
589
29
28
7
33
1.85
58257--58297
21
2.0
21
85
0
55
39
7
4
48
1.52

Tables:   1

The End!