Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3128
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53316
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Found at i:1730 original size:37 final size:37
Alignment explanation
Indices: 1680--1758 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
1670 TTATTACGAA
* *
1680 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
1717 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
1754 GTCTT
1 GTCTT
1759 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:1947 original size:47 final size:47
Alignment explanation
Indices: 1876--2314 Score: 758
Period size: 47 Copynumber: 9.4 Consensus size: 47
1866 CCCTTCGGGA
* * * * * * *
1876 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
1923 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
2017 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
2064 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
2110 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
2157 CTTATCACA-ATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
2202 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
2249 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
2296 CTTATCACATATATACACT
1 CTTATCACATATATACACT
2315 GTCTTGGCTG
Statistics
Matches: 375, Mismatches: 14, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
45 17 0.05
46 100 0.27
47 258 0.69
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:2284 original size:232 final size:234
Alignment explanation
Indices: 1876--2314 Score: 765
Period size: 232 Copynumber: 1.9 Consensus size: 234
1866 CCCTTCGGGA
** * * * *
1876 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
1941 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
2006 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
2071 CATATATACACTTTCACATTCATCACATCGGCATTAGGC
196 CATATATACACTTTCACATTCATCACATCGGCATTAGGC
* * *
2110 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
2174 TTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
2238 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
2303 CATATATACACT
196 CATATATACACT
2315 GTCTTGGCTG
Statistics
Matches: 194, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
232 119 0.61
233 28 0.14
234 47 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (234 bp):
CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCATTAGGC
Found at i:5913 original size:40 final size:40
Alignment explanation
Indices: 5856--6038 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
5846 CCAGCATGAT
* *
5856 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
5896 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
5936 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
5977 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
6017 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
6039 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 98 0.81
41 20 0.17
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:6385 original size:29 final size:29
Alignment explanation
Indices: 6346--6424 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
6336 CTTAATAATC
*
6346 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
6376 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
6405 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
6425 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:9564 original size:57 final size:55
Alignment explanation
Indices: 9470--9619 Score: 212
Period size: 57 Copynumber: 2.7 Consensus size: 55
9460 TTCTGTAAGG
*
9470 ATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTATAGA
1 ATATGATTAT-GGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTATAGA
* * *
9526 ATATGATTATAGGATATTATTTTCTTAGCAACTTGATTCCTAATGGGATATTATAGG
1 ATATGATTAT-GGATATTATCTT-TTAGCAATTTGATTCCTAATGGGATATTATAGA
9583 ATACTG-TTATGAGATATTATCTTTTAGCAATTTGATT
1 ATA-TGATTATG-GATATTATCTTTTAGCAATTTGATT
9620 ACTACATAAC
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
56 34 0.40
57 48 0.57
58 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (55 bp):
ATATGATTATGGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTATAGA
Found at i:12807 original size:19 final size:17
Alignment explanation
Indices: 12785--12827 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
12775 CTGGGTACAT
*
12785 TGGGCCGAAGTGGGCCGTG
1 TGGGCCCAA-TGGG-CGTG
*
12804 TGGGCCCAATGGGCTTG
1 TGGGCCCAATGGGCGTG
12821 TGGGCCC
1 TGGGCCC
12828 CACGCTGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 10 0.45
18 4 0.18
19 8 0.36
ACGTcount: A:0.09, C:0.26, G:0.47, T:0.19
Consensus pattern (17 bp):
TGGGCCCAATGGGCGTG
Found at i:13446 original size:32 final size:32
Alignment explanation
Indices: 13410--13576 Score: 289
Period size: 32 Copynumber: 5.2 Consensus size: 32
13400 GTTTGATATG
13410 GAAATGGGCTAGGCCCAACTGATATTGATTCT
1 GAAATGGGCTAGGCCCAACTGATATTGATTCT
13442 GAAATGGGCTAGGCCCAACTGATATTGATTCT
1 GAAATGGGCTAGGCCCAACTGATATTGATTCT
* *
13474 AAAATGGGCTAGGCCCAACTGATATTGACTCT
1 GAAATGGGCTAGGCCCAACTGATATTGATTCT
13506 GAAATGGGCTAGGCCCAACTGATATTGATTCT
1 GAAATGGGCTAGGCCCAACTGATATTGATTCT
* *
13538 AAAATGGGCTAGCCCCAACTGATATTGATTCT
1 GAAATGGGCTAGGCCCAACTGATATTGATTCT
*
13570 GAGATGG
1 GAAATGG
13577 TTTTCTAAAA
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 127 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (32 bp):
GAAATGGGCTAGGCCCAACTGATATTGATTCT
Found at i:16542 original size:21 final size:21
Alignment explanation
Indices: 16518--16558 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16508 GTGAAAGAGG
* *
16518 TACATGGCAGTGTGGCGGAGA
1 TACATGCCAGTGTGACGGAGA
*
16539 TACATGCCTGTGTGACGGAG
1 TACATGCCAGTGTGACGGAG
16559 TTGCATTGCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.17, G:0.39, T:0.22
Consensus pattern (21 bp):
TACATGCCAGTGTGACGGAGA
Found at i:17398 original size:6 final size:6
Alignment explanation
Indices: 17387--17413 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
17377 TCCTATTTTC
17387 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
17414 ATTAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:20028 original size:27 final size:27
Alignment explanation
Indices: 19990--20042 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
19980 GCTTAATCGA
*
19990 GAGTCAGATTAC-ACAGAAATATAAAAT
1 GAGTCAGATTACAACACAAA-ATAAAAT
20017 GAGTCA-ATTTACAACACAAAATAAAA
1 GAGTCAGA-TTACAACACAAAATAAAA
20043 ATCTGCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 16 0.70
28 6 0.26
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (27 bp):
GAGTCAGATTACAACACAAAATAAAAT
Found at i:20938 original size:6 final size:6
Alignment explanation
Indices: 20897--20922 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
20887 TTATATTTTT
20897 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
20923 GTAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:26426 original size:21 final size:24
Alignment explanation
Indices: 26374--26421 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26364 GGATCAGTTC
26374 ATCGTGGTCATCATCGACGACATT
1 ATCGTGGTCATCATCGACGACATT
26398 ATCGTGGTCATCATCGACGACATT
1 ATCGTGGTCATCATCGACGACATT
26422 CTGGTATACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (24 bp):
ATCGTGGTCATCATCGACGACATT
Found at i:27641 original size:13 final size:13
Alignment explanation
Indices: 27623--27648 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27613 TAAGCAATCG
27623 CACACGGGCGTGT
1 CACACGGGCGTGT
27636 CACACGGGCGTGT
1 CACACGGGCGTGT
27649 TCCTGCTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:36318 original size:18 final size:19
Alignment explanation
Indices: 36280--36323 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
36270 GAAGTCCAAA
*
36280 TTTAAAAATCGATTTGTTTT
1 TTTAAAAATC-ATTCGTTTT
36300 TTTAAAAATC-TTCGTTTT
1 TTTAAAAATCATTCGTTTT
*
36318 TGTAAA
1 TTTAAA
36324 CCCATTCCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 12 0.55
20 10 0.45
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.52
Consensus pattern (19 bp):
TTTAAAAATCATTCGTTTT
Found at i:36849 original size:19 final size:19
Alignment explanation
Indices: 36813--36851 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36803 TTTTCATCAT
* *
36813 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
36832 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
36851 A
1 A
36852 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:37350 original size:56 final size:55
Alignment explanation
Indices: 37277--37381 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
37267 AGCATGGCTG
* * *
37277 CCAGATACAGAAAATGTGACAGAGTCACTAGATACAGATATTTTGTGGCAGTGCTA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCAGTGCTA
* * *
37333 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCA
1 CCAGATACAGA-AAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCA
37382 TAGCCACCAG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 21 0.50
56 21 0.50
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (55 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCAGTGCTA
Found at i:37354 original size:27 final size:27
Alignment explanation
Indices: 37310--37391 Score: 101
Period size: 28 Copynumber: 3.0 Consensus size: 27
37300 GTCACTAGAT
* *
37310 ACAGATATTTTGTGGCAGTGCTACCAGA
1 ACAGATA-TTTGTGGCAGGGCCACCAGA
*
37338 ACAGATATATGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGGGCCACCAGA
**
37365 ACAGATAATTTGTGGCATAGCCACCAG
1 ACAGAT-ATTTGTGGCAGGGCCACCAG
37392 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 23 0.49
28 24 0.51
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGGGCCACCAGA
Found at i:37544 original size:28 final size:28
Alignment explanation
Indices: 37497--37561 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
37487 AAATTAACCC
*
37497 TAGGGGTATAAAGGTCA-TTTAGCATACA
1 TAGGGGTATAAAGGTAATTTTA-CATACA
* *
37525 TAGGAGTATAATGGTAATTTTACATACA
1 TAGGGGTATAAAGGTAATTTTACATACA
37553 TAGGGGTAT
1 TAGGGGTAT
37562 TCTAGTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTACATACA
Found at i:38629 original size:12 final size:13
Alignment explanation
Indices: 38610--38642 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
38600 AGGTTCGGCT
38610 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
38623 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
38635 ATGGAGAA
1 ATGGAGAA
38643 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:46506 original size:104 final size:104
Alignment explanation
Indices: 46326--46549 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
46316 TGTATATAAA
** * *
46326 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
46391 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
46430 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
46494 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
46534 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
46550 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:46601 original size:71 final size:72
Alignment explanation
Indices: 46468--46619 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
46458 TCATTGGTGG
* *
46468 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
46533 GAGGGGT
66 GAGGGGT
***
46540 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
46604 GAGGGGT
66 GAGGGGT
46611 TGCTAAGTG
1 TGCTAAGTG
46620 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Done.