genome.fa.s42.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3738
Parameters: 2 7 7 80 10 50 1000
Length:  60021

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2066--2287	40	5.7	40	84	8	260	25	27	22	24	2.00
2033--2287	116	2.2	118	81	9	290	25	27	21	25	1.99
10015--10238	40	5.7	40	85	5	260	25	27	21	25	1.99
10015--10238	79	2.8	79	85	6	267	25	27	21	25	1.99
12376--12510	27	5.0	28	91	1	188	34	20	24	20	1.96
17093--17419	40	8.2	40	76	12	284	23	23	27	26	2.00
17134--17419	119	2.4	119	87	2	414	23	23	26	26	2.00
17134--17419	80	3.6	80	89	2	407	23	23	26	26	2.00
24992--25310	40	8.2	39	85	6	343	23	23	27	25	2.00
24992--25289	39	7.6	40	86	6	380	23	23	27	25	2.00
24992--25287	79	3.8	80	85	7	385	23	23	27	25	2.00
33137--33463	40	8.2	40	82	7	298	22	23	27	25	2.00
33178--33438	80	3.3	80	90	0	398	22	24	27	24	2.00
33178--33440	120	2.2	119	88	0	400	22	24	27	25	2.00
39723--39808	27	3.2	27	76	0	91	36	16	20	26	1.94
40425--40531	6	17.3	6	69	19	69	19	18	14	47	1.82
40425--40510	25	3.4	25	88	0	127	19	19	13	46	1.83
42558--42640	43	2.0	43	92	2	141	24	27	21	26	1.99
49636--49777	47	3.0	47	84	4	185	30	9	33	26	1.89
49636--49775	49	2.9	49	86	4	171	30	10	33	26	1.89
49898--49976	37	2.1	37	85	0	104	26	18	29	25	1.98
51853--51926	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52316--52552	40	5.9	40	90	0	366	25	22	27	24	2.00
52237--52552	80	4.0	80	87	3	397	25	22	27	24	2.00
52237--52539	120	2.5	121	87	3	416	25	22	27	24	2.00
55921--56261	47	7.4	47	85	7	448	32	8	29	29	1.87
56010--56174	85	1.9	85	97	0	312	34	7	27	30	1.85
55961--56210	132	1.9	134	95	1	459	33	7	28	31	1.85
55921--56261	179	1.9	180	90	1	540	32	8	29	29	1.87
56380--56458	37	2.1	37	88	4	115	25	18	30	25	1.98

Tables:   1

The End!