genome.fa.s420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold394
Parameters: 2 7 7 80 10 50 1000
Length:  52390

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7602--7724	28	4.4	28	92	2	185	26	12	27	33	1.92
7627--7737	28	4.0	27	91	3	143	29	11	25	33	1.91
29741--29887	40	3.7	40	83	5	120	25	27	21	25	2.00
29787--29967	80	2.3	80	83	9	219	27	27	20	23	1.99
29784--29967	40	4.6	40	81	7	196	28	27	20	23	1.99
31670--31826	72	2.2	70	83	6	185	19	29	15	34	1.93
40514--40568	28	2.0	28	88	0	83	21	18	38	21	1.94
40887--41253	27	13.7	25	75	10	250	38	20	9	31	1.84
40902--41253	54	6.6	54	83	6	351	38	20	9	31	1.85
40909--41212	80	3.8	79	83	6	389	37	19	9	32	1.85
40902--41253	107	3.3	107	81	6	367	38	20	9	31	1.85
41234--41312	27	2.9	28	79	5	81	37	17	12	31	1.88
43933--44162	50	4.6	50	75	10	193	25	19	25	30	1.98
48637--48870	32	7.7	29	76	17	114	29	23	16	30	1.96
48637--48870	31	7.7	30	76	15	191	29	23	16	30	1.96
48637--48833	61	3.2	61	79	15	158	29	23	15	30	1.96
48893--49057	42	3.9	42	86	12	221	34	18	14	32	1.91
48893--49050	86	1.9	84	85	12	225	34	18	14	32	1.92
49069--49146	23	3.4	23	77	10	79	23	23	24	29	1.99
52075--52140	3	20.3	3	76	17	53	31	0	66	1	1.01
52055--52314	10	26.8	10	72	19	155	27	0	70	1	1.01
52059--52314	78	3.3	77	75	19	217	27	0	69	1	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52134--52227	31	3.1	32	74	21	69	31	0	68	0	0.90
52251--52301	5	10.4	5	78	19	54	21	0	76	1	0.88
52245--52296	25	2.1	25	92	7	88	19	0	76	3	0.93

Tables:   1

The End!