genome.fa.s426.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1899
Parameters: 2 7 7 80 10 50 1000
Length:  50959

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10018--10179	89	1.8	87	82	5	209	31	18	22	27	1.97
9682--10271	219	2.7	220	91	0	948	33	18	21	26	1.96
10233--10583	78	4.5	78	90	2	562	32	19	24	23	1.97
10212--10583	156	2.4	156	94	0	654	31	19	24	24	1.98
10066--10930	443	2.0	442	89	2	1351	32	18	23	25	1.97
10290--11065	365	2.1	368	86	2	1085	32	18	23	25	1.97
10655--10949	78	3.8	78	85	4	362	33	18	21	26	1.97
10963--11156	45	4.3	45	84	3	248	32	14	27	24	1.94
10980--11148	89	1.9	89	88	0	257	30	13	28	26	1.94
11355--11393	21	1.9	20	89	5	60	74	12	2	10	1.17
11504--11581	36	2.2	35	84	11	104	37	11	12	38	1.80
11511--11593	19	4.6	20	69	30	62	39	8	15	36	1.78
11512--11584	19	3.9	19	85	7	114	38	9	15	36	1.80
13536--13773	118	2.0	118	99	0	467	32	15	24	27	1.96
14655--14700	20	2.3	20	100	0	92	43	0	8	47	1.34
14817--14851	16	2.2	16	90	5	54	45	0	2	51	1.16
16360--16427	18	3.7	19	80	5	86	33	7	11	47	1.68
20460--21305	458	1.8	458	87	1	1264	36	15	18	28	1.92
25627--25659	17	2.0	17	94	5	59	36	15	0	48	1.45
25938--26397	46	9.9	45	83	6	497	22	22	13	41	1.89
25938--26397	92	4.9	92	84	5	564	22	22	13	41	1.89
26238--26392	54	3.0	53	79	14	207	22	21	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25938--26402	183	2.5	183	83	4	574	22	22	13	41	1.89
26195--26392	100	2.0	100	94	0	351	22	21	13	41	1.88
25938--26402	137	3.3	138	85	3	547	22	22	13	41	1.89
29114--29229	39	3.0	39	83	2	135	14	22	24	38	1.91
29912--29945	13	2.5	13	90	4	50	79	0	0	20	0.73
30361--30449	45	2.0	45	100	0	178	39	17	15	26	1.90
37092--37275	40	4.6	39	84	6	212	24	22	27	25	2.00
37092--37275	78	2.3	80	82	9	216	24	22	27	25	2.00

Tables:   1

The End!