genome.fa.s43.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3019
Parameters: 2 7 7 80 10 50 1000
Length:  59550

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--192	46	3.6	46	77	15	139	26	30	13	29	1.94
4--192	47	4.1	47	74	16	155	26	30	13	30	1.94
2397--2560	91	1.9	83	86	12	231	28	25	7	38	1.84
4436--4810	40	9.2	40	83	11	451	23	30	21	24	1.99
4449--4810	81	4.5	79	83	11	423	23	31	21	23	1.98
6085--6229	38	4.0	35	82	7	166	26	30	17	25	1.97
6418--6518	48	2.1	47	91	5	168	27	34	10	26	1.90
10465--10609	36	3.9	37	83	6	186	24	16	31	27	1.96
11821--12019	47	4.1	47	85	5	272	27	31	12	29	1.93
14194--14370	84	2.1	84	95	3	329	26	27	8	37	1.85
15819--15927	57	1.9	58	88	1	166	28	28	19	23	1.98
16139--16565	40	10.8	40	93	2	693	25	29	21	23	1.99
16139--16565	158	2.7	159	91	3	691	25	29	21	23	1.99
17819--17964	37	3.9	37	88	0	202	28	29	17	25	1.97
18124--18321	47	4.1	47	85	5	261	27	31	12	28	1.93
20496--20674	85	2.1	85	97	0	340	26	27	8	37	1.85
26251--26457	40	5.2	40	73	4	157	33	21	13	31	1.92
26359--26480	40	3.0	40	76	7	113	34	23	12	29	1.91
27675--27805	27	4.9	27	89	0	172	29	21	6	41	1.79
27662--27950	27	10.7	27	80	4	154	37	21	7	33	1.83
27783--28006	54	4.1	54	75	9	186	40	21	8	29	1.84
27662--27843	81	2.2	81	75	0	184	34	21	6	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28066--28157	27	3.4	27	87	3	123	33	19	26	20	1.96
28960--29031	26	2.8	26	91	2	110	27	23	22	26	1.99
31743--31960	40	5.5	40	87	2	289	23	26	24	25	2.00
34625--34860	27	8.7	27	80	6	149	37	22	8	32	1.83
34693--34922	54	4.2	54	75	9	180	38	20	8	32	1.83
34720--34922	81	2.5	83	74	6	198	39	21	8	31	1.83
34967--35035	27	2.6	27	84	9	79	34	20	23	21	1.96
34988--35067	27	3.0	27	87	3	99	32	18	25	23	1.97
35869--35993	26	4.8	26	94	0	223	27	20	24	28	1.99
38795--38819	12	2.1	12	100	0	50	0	16	0	84	0.63
39511--39795	3	93.3	3	70	12	80	30	9	3	56	1.48
39507--39557	16	3.6	14	76	12	52	29	3	1	64	1.22
39579--39660	23	3.5	22	69	19	67	30	8	2	58	1.41
44312--44339	13	2.2	13	100	0	56	42	7	14	35	1.73
49054--49157	40	2.6	40	80	3	120	34	20	14	30	1.92
49136--49238	40	2.5	42	80	9	124	37	23	9	29	1.87
51062--51271	40	5.3	40	91	0	305	26	29	20	23	1.99
51062--51324	120	2.2	119	82	4	307	26	28	20	24	1.99
51065--51324	80	3.3	81	84	5	264	26	28	20	24	1.99
51256--51333	40	1.9	41	82	10	97	26	28	21	23	1.99
58955--59165	39	5.3	40	85	8	259	26	29	20	23	1.99

Tables:   1

The End!