genome.fa.s435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1879
Parameters: 2 7 7 80 10 50 1000
Length:  43507

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1498--1566	16	4.5	15	77	13	70	14	1	36	47	1.53
1498--1570	7	9.5	8	76	16	66	13	1	34	50	1.50
1505--1568	23	2.8	23	81	11	78	14	1	35	48	1.53
2052--2208	83	1.9	84	89	9	250	25	20	31	22	1.98
2049--2209	40	3.9	43	86	10	237	24	19	32	22	1.97
2282--2347	30	2.2	31	83	2	80	60	18	3	18	1.49
2601--2648	19	2.4	21	75	13	55	2	50	18	29	1.59
8274--8499	9	24.6	9	75	9	143	38	0	13	47	1.49
8274--8499	18	12.3	18	76	9	161	38	0	13	47	1.49
8327--8499	27	6.2	27	77	10	159	38	1	13	46	1.51
8250--8471	114	1.9	114	86	3	313	38	0	13	47	1.49
8604--8659	15	3.8	15	78	21	73	53	0	0	46	1.00
8835--8902	24	2.8	24	86	8	102	45	7	19	27	1.76
14040--14085	10	4.3	10	79	15	56	43	0	0	56	0.99
14072--14103	15	2.1	15	94	0	55	31	9	0	59	1.29
14966--14999	14	2.4	14	90	9	52	44	23	0	32	1.54
15153--15374	82	2.7	82	90	3	342	18	22	23	35	1.95
15153--15334	41	4.5	41	96	0	339	17	22	24	35	1.95
15154--15374	41	5.4	40	92	2	282	18	22	23	35	1.95
24307--24336	9	3.3	9	95	0	51	33	40	0	26	1.57
26408--26534	43	3.0	43	80	7	161	32	27	16	23	1.96
28589--28680	37	2.5	37	80	5	87	54	5	3	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33119--33174	26	2.2	26	100	0	112	30	7	26	35	1.83
40221--40273	26	2.1	26	96	3	99	32	7	24	35	1.84
43028--43244	39	5.5	40	84	4	239	25	21	27	25	1.99

Tables:   1

The End!