Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3288
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41054
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1479 original size:27 final size:26
Alignment explanation
Indices: 1395--1485 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 26
1385 CCCCAAAATA
*
1395 GGTAAAATGATCGTAATACCACTATAG
1 GGTAAAATGATCGTAATACC-CTGTAG
* * *
1422 GGTAAAATAACCGTAATGCCCATGTAG
1 GGTAAAATGATCGTAATACCC-TGTAG
**
1449 GGTAAAATGATCGTAATACCCTTGTTT
1 GGTAAAATGATCGTAATACCC-TGTAG
1476 GGTAAAATGA
1 GGTAAAATGA
1486 CGATTATGCC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 52 0.98
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.27
Consensus pattern (26 bp):
GGTAAAATGATCGTAATACCCTGTAG
Found at i:2953 original size:46 final size:46
Alignment explanation
Indices: 2901--3076 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
2891 TATTTGGGCA
2901 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * *
2947 TCCGAACTCGTTGGGTTGAGTCTGAGTTC-GTGA--GATGTAACGAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACG
* *
2994 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * ** *
3040 CCCGAGCTCATAGAGTTGAGTCTAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
3077 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 62 0.60
47 30 0.29
48 2 0.02
50 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:3058 original size:93 final size:93
Alignment explanation
Indices: 2897--3069 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
2887 CGGATATTTG
* * * * *
2897 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATAGAG
*
2962 TTGAGTCTGAGTTCGTGAGATGTAACGA
66 TTGAGTCTAAGTTCGTGAGATGTAACGA
* *
2990 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCATAGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATAGAG
3055 TTGAGTCTAAGTTCG
66 TTGAGTCTAAGTTCG
3070 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATAGAG
TTGAGTCTAAGTTCGTGAGATGTAACGA
Found at i:4216 original size:27 final size:26
Alignment explanation
Indices: 4178--4267 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 26
4168 GGTACGAGGG
* * *
4178 CATTACAG-TACTGGTGACTATGTCA
1 CATTACTGTTACTGGTGGCTATGCCA
4203 CATTCACTGTTACTGGTGGCTATGCCA
1 CATT-ACTGTTACTGGTGGCTATGCCA
* *
4230 CAATTACTGATACTGGTGGCTTTGCCA
1 C-ATTACTGTTACTGGTGGCTATGCCA
4257 CATTTACTGTT
1 CA-TTACTGTT
4268 TCTGACAGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.07
26 4 0.07
27 44 0.80
28 3 0.05
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
CATTACTGTTACTGGTGGCTATGCCA
Found at i:4453 original size:28 final size:28
Alignment explanation
Indices: 4421--4481 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
4411 CATTACACTG
*
4421 TACTGATACTGCAT-GGAGCTTAGGCCCA
1 TACTGATACTGCATAGG-GCTAAGGCCCA
* *
4449 TACTGTTACTGTATAGGGCTAAGGCCCA
1 TACTGATACTGCATAGGGCTAAGGCCCA
*
4477 GACTG
1 TACTG
4482 TACCGATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 26 0.93
29 2 0.07
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (28 bp):
TACTGATACTGCATAGGGCTAAGGCCCA
Found at i:7146 original size:17 final size:18
Alignment explanation
Indices: 7124--7157 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7114 TTTGCGCTAA
7124 GTGGG-CCACACGGGCAT
1 GTGGGCCCACACGGGCAT
*
7141 GTGGGCCCACATGGGCA
1 GTGGGCCCACACGGGCA
7158 CGCATTATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.29, G:0.41, T:0.12
Consensus pattern (18 bp):
GTGGGCCCACACGGGCAT
Found at i:10128 original size:54 final size:54
Alignment explanation
Indices: 10068--10490 Score: 501
Period size: 54 Copynumber: 7.9 Consensus size: 54
10058 TTGGTAAGAT
* * **
10068 AAGGATATCATGTAAGACCATGACAAGGCATGGCATTGATAAGTTCTATAAGAT
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * ** *
10122 ATGGATATCATCTAAGACCAT-CCAAGGCATGACATTGATAAGTTAAATAGGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* *
10175 AAGGAAATCATGTAAGACCATGCCAGGGCATGGCATTGATAAATTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* *
10229 AAGGAAATCATGTAAGACCATGCCACGGCAGGGCATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
*
10283 AAGGAAATCATGTAAGACCATGCCAAGGCGTGGCATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * *
10337 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
*** * * * *
10392 AAAGG-TCCCATGTAAGACCTTGCTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * * *
10445 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
10491 AAAAAGGAAA
Statistics
Matches: 319, Mismatches: 46, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
52 4 0.01
53 83 0.26
54 188 0.59
55 40 0.13
56 4 0.01
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:10311 original size:29 final size:29
Alignment explanation
Indices: 10224--10311 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 29
10214 TAAATTCTAT
10224 AAGGCAAGGAAATCATGTAAGACCATGCC
1 AAGGCAAGGAAATCATGTAAGACCATGCC
* ** * *
10253 ACGGC-AGGGCAT--TGATAAGTTCTAT---
1 AAGGCAAGGAAATCATG-TAAG-ACCATGCC
10278 AAGGCAAGGAAATCATGTAAGACCATGCC
1 AAGGCAAGGAAATCATGTAAGACCATGCC
10307 AAGGC
1 AAGGC
10312 GTGGCATTGA
Statistics
Matches: 41, Mismatches: 10, Indels: 16
0.61 0.15 0.24
Matches are distributed among these distances:
25 4 0.10
26 10 0.24
27 8 0.20
28 10 0.24
29 9 0.22
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (29 bp):
AAGGCAAGGAAATCATGTAAGACCATGCC
Found at i:15017 original size:40 final size:40
Alignment explanation
Indices: 14962--15172 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
14952 ATTTGAATGA
* *
14962 TATCCGGGCTAAGTCCCGAAGGCATTTATCCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
15002 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
15042 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
15082 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
15122 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
15162 TATCC-GGCTAA
1 TATCCGGGCTAA
15173 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.05
40 145 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:18426 original size:46 final size:46
Alignment explanation
Indices: 18254--18426 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
18244 AACCCGCCCC
* *** *
18254 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
18300 TAAATGAACTCGGACTCAACTCAACGAGTTCGAAGGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC---GGAC-ATTTGCATCCA
* *
18348 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
18393 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
18427 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 4 0.04
45 2 0.02
46 58 0.55
47 26 0.25
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:27587 original size:42 final size:43
Alignment explanation
Indices: 27505--27599 Score: 131
Period size: 42 Copynumber: 2.2 Consensus size: 43
27495 GCCCCAGACT
* * *
27505 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACA
1 TGGTCTTACACGAAAACAAATATCGATGCCACTGTCCCAAACA
*
27548 TGGTCTTACACGAAAACAAATA-CGATGTCGA-TGTCCCAAACA
1 TGGTCTTACACGAAAACAAATATCGATG-CCACTGTCCCAAACA
27590 TGGTCTTACA
1 TGGTCTTACA
27600 TGTAAATCTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
42 26 0.55
43 21 0.45
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGAAAACAAATATCGATGCCACTGTCCCAAACA
Found at i:32429 original size:47 final size:48
Alignment explanation
Indices: 32371--32500 Score: 201
Period size: 47 Copynumber: 2.7 Consensus size: 48
32361 CTCAATCGAT
*
32371 AAGTACTTATACCATGGCCCGTAGCCAAATCAAGGTAACT-TATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCT-TCACCG
* *
32418 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCACTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCACCG
*
32466 AAATACCTATACCATGGCCCGTAGCCAAATCAAGG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGG
32501 CATCACTCGC
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
47 40 0.53
48 36 0.47
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCACCG
Found at i:32492 original size:48 final size:47
Alignment explanation
Indices: 32378--32500 Score: 194
Period size: 48 Copynumber: 2.6 Consensus size: 47
32368 GATAAGTACT
* *
32378 TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGGAGTACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAATACC
*
32425 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCT-TCACTGAAATACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACT-TATC-CCGAAATACC
32473 TATACCATGGCCCGTAGCCAAATCAAGG
1 TATACCATGGCCCGTAGCCAAATCAAGG
32501 CATCACTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
47 35 0.49
48 36 0.51
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAATACC
Found at i:37882 original size:490 final size:501
Alignment explanation
Indices: 36627--38125 Score: 1882
Period size: 509 Copynumber: 3.0 Consensus size: 501
36617 GAGCTTTTAA
* * ** * * * *
36627 GCTACGCAGGGGTTGGTTGCAACATAGGCCTGTAGTGTTGCAACATCAGAGTCCAATGTTGCGAC
1 GCTATGCAGGGGTTGGTTGCAACA-AAGCCTACAGTGTTGCAACATCAGAATCCGATGTCGCAAC
* * * * * * * **
36692 ATCGAAGGGTCATGATATGGCACATTTTTTGGTGTTAGTGACCTATTAGGAAGACA-AGGACTTT
65 ATCAAAAGGTCATGATATGACACATTTTTTAGTATCAGTGACCTATTAGGCAGACACA-GACCAT
* * * * * * * *
36756 AGGTAGGTTTAATTTGTGTATTTAAGTGTGCAAGATACTTAATTTTAGGCCTAACTAATGTAGGA
129 AGGTAGGCTTAATTTGTGTATTTAAGTGTACAAGATGCTTAATTCTAGGCCCAATTGATATAGGA
* * * * * * * * * * *
36821 ATGTGGGACGAGTGTTGTACAAGCTTCTCATGCTATACAAGCATGATAAGAACTTTCAAGTCCAC
194 ATATGGGATGAGTGTTGCACAAGCTTCACACGCCATAAAAGCACGACAAGAACTTCCAAGCCCAC
* * *
36886 AAAATGACTTCTATGGCGTGACACGCTCCCTATGTTGCAACATAGCAGCCCTATGTTGAG-TGTA
259 AAAATGAC-T-TAT-GCAT-A-ACG--CCC--TGTTG-AACATAGTACCCCTATGTTGAGATGTA
* * *
36950 GCATCTCTTATGTTGAGACGTAGCCTGAACATGAGTCATAAGTAATAATGACGTCAGTGGTCGTG
314 GCATCTCCTATGTTGAGACGTAGCCTGAACATGAGTCACAAGTAATAATGACGTCAATGGTCGTG
* * *
37015 TTTGAAAAGATTTTATGATATCATTTGATATTTCACATTTACTAGTATCGGGGGCATATAAGGGA
379 TTTGAAAAGATTTTATGATATCATTTGATATTTCACATTTATTAGTATCGGGGGCATATCAGGCA
* * *
37080 TAAAGTGCACATATTCTA-CCTATAAATAAAAGGTCTCTGTACACAAGGGGCTTTTGG
444 TAAAGTGCACATATTTTAGCCTATAAATAAGAGGTCTCTGTACACAAGGGACTTTTGG
* * * *
37137 GCTATGCAGGGGTTGGTTGCAACATAGGCTGCAGTGTTGCAACATCAGAGTCCGATGTCGCAACA
1 GCTATGCAGGGGTTGGTTGCAACAAAGCCTACAGTGTTGCAACATCAGAATCCGATGTCGCAACA
*
37202 TCAAAAGGTCATGATATGACACATTTTTTAGTGTCAGTGACCTATTAGGCAGACACAGACCATAG
66 TCAAAAGGTCATGATATGACACATTTTTTAGTATCAGTGACCTATTAGGCAGACACAGACCATAG
*
37267 GTAGGCTTAATTTGTGTATTTAAGTGTACAAGATGCTTAATTCTAGGCCCAATTGATGTAGGAAT
131 GTAGGCTTAATTTGTGTATTTAAGTGTACAAGATGCTTAATTCTAGGCCCAATTGATATAGGAAT
* * * * *
37332 ATGGGATGAGTGTTGTACAAGCTTCCCATGCCATAAAAGCATGACAGGAACTTCCAAGCCCACAA
196 ATGGGATGAGTGTTGCACAAGCTTCACACGCCATAAAAGCACGACAAGAACTTCCAAGCCCACAA
* * *
37397 AATGAC-T-T-C-T-ACG-GC-G-TG-ACA-CG-CCCCCTATGTTGAGATGTAGCATCTCCTATG
261 AATGACTTATGCATAACGCCCTGTTGAACATAGTACCCCTATGTTGAGATGTAGCATCTCCTATG
*
37451 TTGAAACGTAGCCTGAACATGAGTCACAAGTAATAATGACGTCAATGGTCGTGTTTGAAAAGATT
326 TTGAGACGTAGCCTGAACATGAGTCACAAGTAATAATGACGTCAATGGTCGTGTTTGAAAAGATT
37516 TTATGATATCATTTGATATTTCACATTTATTAGTATCGGGGGCATATCAGGCATAAAGTGCACAT
391 TTATGATATCATTTGATATTTCACATTTATTAGTATCGGGGGCATATCAGGCATAAAGTGCACAT
*
37581 ATTTTAGCCTATAAATAAGAGGTCTCTGTACACAAGGGATTTTTGG
456 ATTTTAGCCTATAAATAAGAGGTCTCTGTACACAAGGGACTTTTGG
* * * *
37627 GCTATGCAGGGGGTTGGTTGCAACACAAGCCTACAGTGTTGCAACATTAGAATCTGATGTTGCGA
1 GCTATGCA-GGGGTTGGTTGCAACA-AAGCCTACAGTGTTGCAACATCAGAATCCGATGTCGCAA
** * * *
37692 CATGGAAGGGTCATGATATGACACATTTTTTAGTATTAGTGACCTATTAGGCAGACACGGACCAT
64 CATCAAAAGGTCATGATATGACACATTTTTTAGTATCAGTGACCTATTAGGCAGACACAGACCAT
* *
37757 A-TTAGGTTTAATTTGTGTATTT-AGTGTACAAGATGCTTAATTCTAGGCCCAATTGATATAGGA
129 AGGTAGGCTTAATTTGTGTATTTAAGTGTACAAGATGCTTAATTCTAGGCCCAATTGATATAGGA
* *
37820 ATGTGGGATGAGTGTTGCACAAGCTTCACACGCCATAAAAGCACGATAAGAACTTCCAAGCCCAC
194 ATATGGGATGAGTGTTGCACAAGCTTCACACGCCATAAAAGCACGACAAGAACTTCCAAGCCCAC
*
37885 AAAATGACTTTTATGGCATGAAACGTCCCCTATGTTGCAACATAGTAGCCCTATGTTGAGATGTA
259 AAAATGAC--TTAT-GCAT--AACG--CCC--TGTTG-AACATAGTACCCCTATGTTGAGATGTA
* * * *
37950 GCATCTTCTAT-TTGAGATGTAGCCTGAACATGAGTCACAAGTAATAATGATGT-AAGTGGCCGT
314 GCATCTCCTATGTTGAGACGTAGCCTGAACATGAGTCACAAGTAATAATGACGTCAA-TGGTCGT
* **
38013 GTTTGAAAAGATTTTATGATATCGTTTGATATTTCACATTTATTAGTATCCAGGGCATATCAGGC
378 GTTTGAAAAGATTTTATGATATCATTTGATATTTCACATTTATTAGTATCGGGGGCATATCAGGC
38078 ATAAAGTGCACATATTTTAGCCTATAAATAAGAGGTCTCTGTACACAA
443 ATAAAGTGCACATATTTTAGCCTATAAATAAGAGGTCTCTGTACACAA
38126 ATAAGGGCAT
Statistics
Matches: 879, Mismatches: 83, Indels: 54
0.87 0.08 0.05
Matches are distributed among these distances:
488 12 0.01
489 145 0.16
490 153 0.17
491 35 0.04
492 93 0.11
493 2 0.00
494 1 0.00
496 2 0.00
497 1 0.00
499 3 0.00
500 3 0.00
502 1 0.00
503 2 0.00
505 1 0.00
506 2 0.00
507 2 0.00
509 214 0.24
510 180 0.20
511 27 0.03
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (501 bp):
GCTATGCAGGGGTTGGTTGCAACAAAGCCTACAGTGTTGCAACATCAGAATCCGATGTCGCAACA
TCAAAAGGTCATGATATGACACATTTTTTAGTATCAGTGACCTATTAGGCAGACACAGACCATAG
GTAGGCTTAATTTGTGTATTTAAGTGTACAAGATGCTTAATTCTAGGCCCAATTGATATAGGAAT
ATGGGATGAGTGTTGCACAAGCTTCACACGCCATAAAAGCACGACAAGAACTTCCAAGCCCACAA
AATGACTTATGCATAACGCCCTGTTGAACATAGTACCCCTATGTTGAGATGTAGCATCTCCTATG
TTGAGACGTAGCCTGAACATGAGTCACAAGTAATAATGACGTCAATGGTCGTGTTTGAAAAGATT
TTATGATATCATTTGATATTTCACATTTATTAGTATCGGGGGCATATCAGGCATAAAGTGCACAT
ATTTTAGCCTATAAATAAGAGGTCTCTGTACACAAGGGACTTTTGG
Done.