Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1316
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40060
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Found at i:1375 original size:1 final size:1
Alignment explanation
Indices: 1369--1402 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
1359 AAACCCAAAG
**
1369 AAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1403 CAAATGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1403 original size:11 final size:11
Alignment explanation
Indices: 1371--1406 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
1361 ACCCAAAGAA
*
1371 AAAAAAAAAAA
1 AAAAAAAAAAC
1382 AAAAAAAAAAC
1 AAAAAAAAAAC
*
1393 CAAAAAAAAAC
1 AAAAAAAAAAC
1404 AAA
1 AAA
1407 TGATATTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:1406 original size:10 final size:10
Alignment explanation
Indices: 1364--1406 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
1354 GGAGAAAACC
1364 CAAAGAAAAAA
1 CAAA-AAAAAA
1375 -AAAAAAAAA
1 CAAAAAAAAA
*
1384 -AAAAAAAAC
1 CAAAAAAAAA
1393 CAAAAAAAAA
1 CAAAAAAAAA
1403 CAAA
1 CAAA
1407 TGATATTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 14 0.48
10 15 0.52
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:9798 original size:14 final size:14
Alignment explanation
Indices: 9776--9823 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
9766 ACCTAAACCG
* *
9776 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
9790 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
*
9804 ACCCTTTTGTTCCT
1 ACCATTTTGTTCCT
9818 ACCATT
1 ACCATT
9824 CCATTCGTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.46
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:11494 original size:21 final size:20
Alignment explanation
Indices: 11460--11527 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
11450 ACATTCTTGT
11460 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
11481 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
*
11502 AAAGAAAAAGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
11523 AAAGA
1 AAAGA
11528 GAGGCAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.20
21 28 0.68
22 5 0.12
ACGTcount: A:0.78, C:0.03, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:11495 original size:6 final size:5
Alignment explanation
Indices: 11471--11527 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
11461 AAGAGAAAAC
*
11471 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGAA AAAGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAG-A AAAGA AA-AGA
11518 AAAGA AAAGA
1 AAAGA AAAGA
11528 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 16 0.36
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:11520 original size:25 final size:25
Alignment explanation
Indices: 11475--11523 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
11465 GAAAACAAAG
11475 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAAGAAAAA-CAAAAGAAGA
*
11501 AAAAGAAAAAGAAATA-AAAAGAA
1 AAAAG-AAAAGAAAAACAAAAGAA
11524 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGAAAAACAAAAGAAGA
Found at i:12148 original size:24 final size:24
Alignment explanation
Indices: 12116--12161 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
12106 CTGATGTTTT
12116 TGATGTGAGCTTGCCTACGAACAA
1 TGATGTGAGCTTGCCTACGAACAA
12140 TGATGTGAGCTTGCCTACGAAC
1 TGATGTGAGCTTGCCTACGAAC
12162 CAAATGGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (24 bp):
TGATGTGAGCTTGCCTACGAACAA
Found at i:13667 original size:12 final size:12
Alignment explanation
Indices: 13652--13681 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13642 ATTGTAGATT
13652 AAAAAAATCGAA
1 AAAAAAATCGAA
*
13664 AAAAAAATTGAA
1 AAAAAAATCGAA
13676 AAAAAA
1 AAAAAA
13682 TTAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (12 bp):
AAAAAAATCGAA
Found at i:13689 original size:12 final size:11
Alignment explanation
Indices: 13652--13691 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
13642 ATTGTAGATT
*
13652 AAAAAAATCGAA
1 AAAAAAAT-TAA
*
13664 AAAAAAATTGA
1 AAAAAAATTAA
13675 AAAAAAATTAA
1 AAAAAAATTAA
13686 AAAAAA
1 AAAAAA
13692 CAAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 17 0.68
12 8 0.32
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:14830 original size:20 final size:20
Alignment explanation
Indices: 14807--14860 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
14797 AGTTTTTCCC
*
14807 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
14827 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
14847 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
14861 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:14842 original size:30 final size:30
Alignment explanation
Indices: 14807--14880 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
14797 AGTTTTTCCC
14807 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
14837 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
14867 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
14881 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:14870 original size:20 final size:20
Alignment explanation
Indices: 14807--14871 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
14797 AGTTTTTCCC
* * * *
14807 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
14827 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
14846 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
14867 AGCTC
1 AGCTC
14872 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:17626 original size:17 final size:18
Alignment explanation
Indices: 17587--17628 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
17577 AAGAAGAAAA
17587 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
17604 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
17621 TCAAAAGA
1 ACAAAAGA
17629 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:20436 original size:24 final size:24
Alignment explanation
Indices: 20404--20451 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
20394 AGAGGAGGGG
20404 AATGATGTGAGCTTGCCTACGAAC
1 AATGATGTGAGCTTGCCTACGAAC
20428 AATGATGTGAGCTTGCCTACGAAC
1 AATGATGTGAGCTTGCCTACGAAC
20452 CAAATGGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (24 bp):
AATGATGTGAGCTTGCCTACGAAC
Found at i:23583 original size:30 final size:29
Alignment explanation
Indices: 23547--23645 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 29
23537 CGAGCTCACT
23547 CCTAGCTCATA-TTCAGCTCACGAGCTAAA
1 CCTAGCTCA-ACTTCAGCTCACGAGCTAAA
* * * * *
23576 CCATAGCTCAACTTCAGCTTAGGAGTTTAG
1 CC-TAGCTCAACTTCAGCTCACGAGCTAAA
*
23606 CCTCAGCTCAACTTTAGCTCACGAGCTAAA
1 CCT-AGCTCAACTTCAGCTCACGAGCTAAA
*
23636 GCTTAGCTCA
1 -CCTAGCTCA
23646 TTTTAGTTTA
Statistics
Matches: 54, Mismatches: 12, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
29 4 0.07
30 48 0.89
31 2 0.04
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (29 bp):
CCTAGCTCAACTTCAGCTCACGAGCTAAA
Found at i:25388 original size:30 final size:30
Alignment explanation
Indices: 25354--25438 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 30
25344 TAAACTAAAA
*
25354 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * * *
25384 TGAGCTGAGATTAAACTCCTAAGTTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
25414 TGAGCTAAGGTTTAGCTCGCGAGCT
1 TGAGCTAAGATTTAGCTCGTGAGCT
25439 GAATATGAGC
Statistics
Matches: 39, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:26462 original size:30 final size:30
Alignment explanation
Indices: 26428--26524 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
26418 AGCTCACTCC
26428 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
26458 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
26488 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
26518 TAGCTCA
1 TAGCTCA
26525 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:28234 original size:9 final size:10
Alignment explanation
Indices: 28219--28258 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
28209 AAGAAATTCG
*
28219 AAAAAAAATT
1 AAAAAAAATC
28229 AAAAAAAATC
1 AAAAAAAATC
**
28239 AAAAAAAAAA
1 AAAAAAAATC
28249 AAAAAAAATC
1 AAAAAAAATC
28259 GAAGTAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:28234 original size:10 final size:10
Alignment explanation
Indices: 28219--28257 Score: 53
Period size: 9 Copynumber: 3.9 Consensus size: 10
28209 AAGAAATTCG
*
28219 AAAAAAAATT
1 AAAAAAAATA
28229 AAAAAAAATCA
1 AAAAAAAAT-A
28240 AAAAAAAA-A
1 AAAAAAAATA
28249 AAAAAAAAT
1 AAAAAAAAT
28258 CGAAGTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 9 0.35
10 9 0.35
11 8 0.31
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:28242 original size:20 final size:20
Alignment explanation
Indices: 28219--28275 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 20
28209 AAGAAATTCG
**
28219 AAAAAAAATTAAAAAAAATC
1 AAAAAAAAAAAAAAAAAATC
28239 AAAAAAAAAAAAAAAAAATC
1 AAAAAAAAAAAAAAAAAATC
28259 GAAGTAAAAAAAAAAAA
1 -AA--AAAAAAAAAAAA
28276 GTGAAAAGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
23 12 0.38
ACGTcount: A:0.84, C:0.04, G:0.04, T:0.09
Consensus pattern (20 bp):
AAAAAAAAAAAAAAAAAATC
Found at i:29205 original size:37 final size:37
Alignment explanation
Indices: 29154--29224 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
29144 CATTCTTGTA
29154 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
29191 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
29225 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:29224 original size:6 final size:6
Alignment explanation
Indices: 29164--29213 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
29154 AAGAGAAAAC
*
29164 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
29213 A
1 A
29214 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:31470 original size:30 final size:30
Alignment explanation
Indices: 31436--31532 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
31426 AGCTCACTCC
31436 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
31466 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
31496 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
31526 TAGCTCA
1 TAGCTCA
31533 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:35335 original size:30 final size:30
Alignment explanation
Indices: 35301--35397 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
35291 TAAACTAAAA
35301 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
35331 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
35361 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
35391 TGAGCTA
1 TGAGCTA
35398 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:38282 original size:13 final size:13
Alignment explanation
Indices: 38264--38288 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38254 AACCTACAAA
38264 AATTAAATAACAT
1 AATTAAATAACAT
38277 AATTAAATAACA
1 AATTAAATAACA
38289 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:38534 original size:21 final size:21
Alignment explanation
Indices: 38510--38549 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38500 GAAAAAGGAA
*
38510 TGAGCTGAAACGAGCTAAATT
1 TGAGCTCAAACGAGCTAAATT
38531 TGAGCTCAAACGAGCTAAA
1 TGAGCTCAAACGAGCTAAA
38550 ACGAGCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (21 bp):
TGAGCTCAAACGAGCTAAATT
Found at i:40028 original size:14 final size:14
Alignment explanation
Indices: 39986--40030 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
39976 TTAAAGAAGC
39986 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
40000 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
40013 AACTCATTTAATTA
1 AACTCATTAAATTA
40027 AACT
1 AACT
40031 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Done.