genome.fa.s450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3521
Parameters: 2 7 7 80 10 50 1000
Length:  202533

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54--105	13	4.2	13	81	15	58	11	26	0	61	1.30
6093--6122	14	2.1	14	93	0	51	46	10	13	30	1.75
9980--10025	25	1.9	25	86	8	69	60	0	4	34	1.16
10307--10345	16	2.4	16	86	0	51	43	28	5	23	1.75
10508--10561	18	3.3	18	66	28	57	20	7	50	22	1.73
10504--10571	30	2.3	30	97	0	127	16	5	52	25	1.65
13691--13745	2	28.0	2	85	3	76	43	0	5	50	1.25
15341--15633	130	2.3	130	87	4	423	35	16	17	30	1.92
16283--16309	2	13.5	2	100	0	54	51	0	0	48	1.00
16741--16767	14	1.9	14	100	0	54	51	3	7	37	1.48
27804--27945	3	46.0	3	72	12	76	63	2	7	27	1.32
27999--28028	15	2.0	15	93	0	51	56	13	6	23	1.60
29469--29891	182	2.3	182	86	3	593	28	21	18	32	1.96
29819--30780	132	7.3	132	93	0	1518	28	25	19	27	1.99
29826--30689	45	19.6	45	66	9	231	28	25	19	27	1.99
31372--31409	15	2.5	15	100	0	76	26	31	13	28	1.93
37817--37874	30	1.9	30	85	0	80	29	24	6	39	1.81
41252--41296	19	2.4	19	88	7	65	48	6	20	24	1.73
42715--42766	25	2.1	25	85	3	70	26	19	21	32	1.97
42822--42874	11	5.0	11	79	6	65	30	20	13	35	1.91
42814--42874	21	2.9	21	85	4	88	32	19	11	36	1.88
42814--42874	10	5.9	10	77	11	61	32	19	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50521--50572	25	2.1	25	85	3	70	26	19	21	32	1.97
50620--50680	21	2.9	21	85	4	88	32	19	11	36	1.88
50620--50680	10	5.9	10	77	11	61	32	19	11	36	1.88
50717--50766	25	2.0	26	88	4	75	26	12	24	38	1.90
50949--51047	33	3.0	33	89	2	155	39	21	10	29	1.86
50955--51051	32	3.0	32	90	1	149	38	19	11	30	1.87
55818--55842	4	6.2	4	100	0	50	76	0	0	24	0.80
55881--55930	22	2.3	21	80	12	57	56	4	10	30	1.51
55987--56046	24	2.5	24	81	2	77	61	6	5	26	1.42
55995--56050	15	3.8	15	78	2	51	62	5	5	26	1.39
55919--56038	3	40.7	3	65	18	56	61	5	5	28	1.38
59767--59881	60	2.0	59	83	10	148	40	3	6	50	1.44
62004--62116	51	2.2	51	91	0	181	34	13	23	29	1.92
63819--63858	20	2.0	20	95	0	71	42	15	12	30	1.83
65567--65602	18	2.0	18	94	0	63	30	16	8	44	1.77
72263--72295	17	1.9	17	93	0	57	24	18	18	39	1.92
76253--76303	21	2.3	21	83	12	59	49	13	3	33	1.61
86485--86523	20	2.0	20	94	0	69	56	2	10	30	1.46
96296--96336	5	8.2	5	97	0	64	24	60	14	0	1.34
96441--96517	40	1.9	40	89	0	118	45	14	3	36	1.63
99001--99034	15	2.1	17	89	10	54	35	0	0	64	0.94
99032--99097	29	2.2	30	86	7	91	45	3	1	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99501--99525	13	1.9	13	100	0	50	56	0	4	40	1.18
101318--101364	14	3.3	14	84	3	58	61	2	0	36	1.08
101318--101383	14	4.4	14	75	11	51	63	1	1	33	1.13
101313--101358	21	2.2	21	88	7	67	67	2	0	30	1.03
101773--101798	10	2.6	10	100	0	52	92	0	0	7	0.39
109290--109370	40	2.0	40	90	0	126	53	13	3	29	1.57
109406--109446	19	2.2	19	90	0	64	43	14	4	36	1.67
111588--111682	47	2.0	48	85	6	131	30	11	21	36	1.89
111632--111758	60	2.1	61	92	1	211	29	14	22	33	1.93
115858--115892	12	2.9	12	95	0	61	48	14	0	37	1.44
116445--116471	11	2.5	11	100	0	54	37	7	7	48	1.59
116907--116964	17	3.1	20	66	19	52	43	10	17	29	1.82
119749--119789	21	2.0	21	90	0	64	29	21	29	19	1.98
121695--121751	30	1.9	30	92	0	96	49	10	17	22	1.77
146059--146142	31	2.8	31	78	10	84	22	13	9	54	1.67
148678--148721	23	1.9	23	95	0	79	36	11	9	43	1.72
148855--148906	20	2.8	18	78	21	63	51	3	0	44	1.19
148850--148953	37	3.0	37	71	20	98	50	3	2	42	1.35
164089--164221	42	3.1	43	78	6	135	24	15	27	32	1.96
166350--166440	35	2.6	35	79	6	105	29	8	18	42	1.80
171717--171791	31	2.4	31	86	0	96	54	13	5	26	1.60
173413--173535	64	1.9	64	88	0	183	24	19	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181070--181115	13	3.8	13	72	21	55	39	52	0	8	1.33
181634--181683	23	2.2	23	81	0	55	32	8	4	56	1.47
181863--181903	22	1.9	21	85	5	55	26	7	0	65	1.18
181868--181903	18	2.1	16	90	10	54	27	2	0	69	1.02
188416--188676	133	2.0	133	88	0	387	31	18	21	28	1.97
188514--189029	177	2.9	176	85	2	728	31	19	21	27	1.97
188826--189162	133	2.5	133	85	1	372	32	19	21	26	1.97
188691--189639	310	3.1	309	86	1	1301	31	19	20	27	1.97
188514--189275	177	4.3	177	80	5	589	32	19	20	27	1.97
189156--189473	133	2.4	133	80	4	338	31	19	22	26	1.98
188999--189340	177	1.9	177	89	1	533	31	20	21	26	1.98
188999--189381	177	2.2	177	85	2	439	32	19	20	27	1.97
189268--189613	177	2.0	177	79	2	381	31	19	21	28	1.97
189618--189910	134	2.2	134	83	1	383	32	19	20	27	1.97
189668--190087	89	4.7	88	75	6	312	31	20	20	27	1.98
189662--189951	45	6.5	44	75	6	187	31	19	20	27	1.97
189600--190058	45	10.3	45	72	7	177	31	19	21	27	1.97
188467--190087	44	36.5	44	67	8	279	31	19	20	27	1.97
190837--191168	3	109.0	3	68	17	62	27	8	2	61	1.39
190843--190892	23	2.2	23	85	0	64	36	6	0	58	1.23
191116--191164	22	2.3	21	79	6	62	28	6	0	65	1.16
191090--191160	31	2.3	30	80	9	81	29	9	0	60	1.29

Tables:   1

The End!