Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold373
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105144
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:492 original size:14 final size:14
Alignment explanation
Indices: 473--500 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
463 ACAGATGGAT
473 TCGTATAATTCTTA
1 TCGTATAATTCTTA
487 TCGTATAATTCTTA
1 TCGTATAATTCTTA
501 ATATATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:3513 original size:16 final size:16
Alignment explanation
Indices: 3492--3542 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
3482 TTTCTAGTAT
*
3492 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
3508 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
3524 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
3540 TTT
1 TTT
3543 GCTGTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:4542 original size:11 final size:12
Alignment explanation
Indices: 4512--4550 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
4502 CTGAGAGTGG
4512 TAAAGTAAATAA
1 TAAAGTAAATAA
4524 -AAAGTAAATAA
1 TAAAGTAAATAA
*
4535 TAAA-TAAAGAA
1 TAAAGTAAATAA
4546 TAAAG
1 TAAAG
4551 AGAATAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 21 0.88
12 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (12 bp):
TAAAGTAAATAA
Found at i:6186 original size:8 final size:8
Alignment explanation
Indices: 6160--6305 Score: 103
Period size: 8 Copynumber: 18.9 Consensus size: 8
6150 AAAAATAGAA
6160 ATAAATAT
1 ATAAATAT
6168 AT--ATA-
1 ATAAATAT
6173 AT-AATAT
1 ATAAATAT
6180 ATAAATAT
1 ATAAATAT
*
6188 AAAAATAAT
1 ATAAAT-AT
*
6197 ATTAATAT
1 ATAAATAT
6205 ATAAATAT
1 ATAAATAT
6213 ATAAATAT
1 ATAAATAT
*
6221 AAAAATAT
1 ATAAATAT
6229 ATAAAATAT
1 AT-AAATAT
*
6238 TTAGAATAT
1 ATA-AATAT
*
6247 ATATA-AT
1 ATAAATAT
*
6254 A-AAATAG
1 ATAAATAT
6261 ATATAATAT
1 ATA-AATAT
*
6270 ATAAATAA
1 ATAAATAT
**
6278 ATTGA-AT
1 ATAAATAT
6285 AT-AATAT
1 ATAAATAT
*
6292 -TAAATAG
1 ATAAATAT
6299 ATAAATA
1 ATAAATA
6306 AATTAAACCA
Statistics
Matches: 108, Mismatches: 18, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
5 2 0.02
6 10 0.09
7 16 0.15
8 53 0.49
9 27 0.25
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (8 bp):
ATAAATAT
Found at i:6255 original size:23 final size:23
Alignment explanation
Indices: 6225--6278 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
6215 AAATATAAAA
**
6225 ATAT-ATAAAATATTTAGAATAT
1 ATATAATAAAATAGATAGAATAT
*
6247 ATATAATAAAATAGATATAATAT
1 ATATAATAAAATAGATAGAATAT
6270 ATA-AATAAA
1 ATATAATAAA
6279 TTGAATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAATAAAATAGATAGAATAT
Found at i:6286 original size:22 final size:22
Alignment explanation
Indices: 6158--6297 Score: 92
Period size: 21 Copynumber: 6.2 Consensus size: 22
6148 CAAAAAATAG
*
6158 AAATAAATATATATAATAATATAT
1 AAATAAA-ATAGAT-ATAATATAT
6182 AAATATAAAAATA-ATATTAATATAT
1 -AA-AT-AAAATAGATA-TAATATAT
* * *
6207 AAAT-ATATAAATATAA-AAAT
1 AAATAAAATAGATATAATATAT
* ** *
6227 ATATAAAATATTTAGAATATAT
1 AAATAAAATAGATATAATATAT
6249 ATAATAAAATAGATATAATATAT
1 A-AATAAAATAGATATAATATAT
*
6272 AAAT-AAATTGAATATAATAT-T
1 AAATAAAATAG-ATATAATATAT
6293 AAATA
1 AAATA
6298 GATAAATAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
20 6 0.06
21 25 0.27
22 19 0.20
23 20 0.22
24 3 0.03
25 12 0.13
26 5 0.05
27 3 0.03
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
AAATAAAATAGATATAATATAT
Found at i:6703 original size:13 final size:13
Alignment explanation
Indices: 6685--6712 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6675 GTTATTCATA
6685 ATTAATATGAATT
1 ATTAATATGAATT
6698 ATTAATATGAATT
1 ATTAATATGAATT
6711 AT
1 AT
6713 AGACTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:6906 original size:8 final size:8
Alignment explanation
Indices: 6866--6923 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
6856 AAATTAAAAT
6866 TTTATATA
1 TTTATATA
* *
6874 TATATATT
1 TTTATATA
*
6882 TATTATTTA
1 T-TTATATA
*
6891 TCTATATA
1 TTTATATA
6899 TTTATATA
1 TTTATATA
6907 TTTAATATA
1 TTT-ATATA
6916 TTTA-ATA
1 TTTATATA
6923 T
1 T
6924 CTTTTTTATA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
7 4 0.10
8 23 0.57
9 13 0.32
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (8 bp):
TTTATATA
Found at i:6915 original size:19 final size:19
Alignment explanation
Indices: 6870--6916 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
6860 TAAAATTTTA
6870 TATATATATATTTATTATT
1 TATATATATATTTATTATT
*
6889 TATCTATATATTTATATATT
1 TATATATATATTTAT-TATT
6909 TA-ATATAT
1 TATATATAT
6917 TTAATATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TATATATATATTTATTATT
Found at i:6916 original size:9 final size:9
Alignment explanation
Indices: 6894--6923 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
6884 TTATTTATCT
6894 ATATATTT-
1 ATATATTTA
6902 ATATATTTA
1 ATATATTTA
6911 ATATATTTA
1 ATATATTTA
6920 ATAT
1 ATAT
6924 CTTTTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
ATATATTTA
Found at i:7008 original size:17 final size:17
Alignment explanation
Indices: 6986--7024 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
6976 CTGACTCCAT
*
6986 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
7003 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
7020 TTTTA
1 TTTTA
7025 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:7120 original size:31 final size:31
Alignment explanation
Indices: 7085--7144 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
7075 CGATCGATTT
7085 AATAGATTTAATATAGATTAAATTTATTTTG
1 AATAGATTTAATATAGATTAAATTTATTTTG
7116 AATAGATTTAATATAGATTAAATTTATTT
1 AATAGATTTAATATAGATTAAATTTATTT
7145 CTATTTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.48
Consensus pattern (31 bp):
AATAGATTTAATATAGATTAAATTTATTTTG
Found at i:7221 original size:15 final size:17
Alignment explanation
Indices: 7191--7222 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7181 GTCAAAATCT
7191 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
7208 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
7223 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:7345 original size:27 final size:28
Alignment explanation
Indices: 7315--7371 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
7305 AAATGAATGG
*
7315 AATAATTAGTTCTAGTTATTA-AATATA
1 AATAATTAGTTCTAGCTATTATAATATA
*
7342 AATAATTAGTTCTAGCTATTATACTATA
1 AATAATTAGTTCTAGCTATTATAATATA
7370 AA
1 AA
7372 AAAATAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (28 bp):
AATAATTAGTTCTAGCTATTATAATATA
Found at i:7874 original size:18 final size:18
Alignment explanation
Indices: 7847--7889 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7837 CGCATAAAAA
* *
7847 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
7865 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
7883 GAAAGAA
1 GAAAGAA
7890 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:11683 original size:20 final size:19
Alignment explanation
Indices: 11658--11707 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
11648 GGATCACTAA
11658 CTAATACTAATCTAAT-CT
1 CTAATACTAATCTAATACT
11676 ACCTAATACTAATCTAATACT
1 --CTAATACTAATCTAATACT
11697 CTAATACTAAT
1 CTAATACTAAT
11708 AGAATAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 11 0.38
20 16 0.55
21 2 0.07
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (19 bp):
CTAATACTAATCTAATACT
Found at i:11722 original size:14 final size:14
Alignment explanation
Indices: 11705--11732 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11695 CTCTAATACT
11705 AATAGAATAGAAAA
1 AATAGAATAGAAAA
11719 AATAGAATAGAAAA
1 AATAGAATAGAAAA
11733 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:13247 original size:27 final size:26
Alignment explanation
Indices: 13203--13254 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
13193 GGACTACCGA
*
13203 TTTACCCCTAGAGGGTAAAATGACTAT
1 TTTACCCCTAGAGCGT-AAATGACTAT
* *
13230 TTTACCCCTCGTGCGTAAATGACTA
1 TTTACCCCTAGAGCGTAAATGACTA
13255 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
TTTACCCCTAGAGCGTAAATGACTAT
Found at i:13981 original size:27 final size:26
Alignment explanation
Indices: 13943--14002 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
13933 CCACATATAT
* *
13943 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
13969 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
13996 ATATCTG
1 ATATCTG
14003 GCAGCCTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:15404 original size:20 final size:21
Alignment explanation
Indices: 15379--15418 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
15369 CGTGTGACCC
15379 ATTTTTCAGTTTT-TTTCAAT
1 ATTTTTCAGTTTTATTTCAAT
**
15399 ATTTTTTTGTTTTATTTCAA
1 ATTTTTCAGTTTTATTTCAA
15419 ATTAGTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (21 bp):
ATTTTTCAGTTTTATTTCAAT
Found at i:19557 original size:30 final size:30
Alignment explanation
Indices: 19523--19583 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
19513 TCCTTAACTC
19523 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
19553 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
19583 A
1 A
19584 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:21675 original size:71 final size:71
Alignment explanation
Indices: 21559--21697 Score: 260
Period size: 71 Copynumber: 2.0 Consensus size: 71
21549 ACACATGGTC
* *
21559 GTGTCTCTGCCTGTGTGGAATATACCTAGACTATTTTCCAAGCTTTGGTCAACCTTAATCTCTTA
1 GTGTCTCAGCCTGTGTGGAAAATACCTAGACTATTTTCCAAGCTTTGGTCAACCTTAATCTCTTA
21624 CACCAT
66 CACCAT
21630 GTGTCTCAGCCTGTGTGGAAAATACCTAGACTATTTTCCAAGCTTTGGTCAACCTTAATCTCTTA
1 GTGTCTCAGCCTGTGTGGAAAATACCTAGACTATTTTCCAAGCTTTGGTCAACCTTAATCTCTTA
21695 CAC
66 CAC
21698 ACTTATACAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (71 bp):
GTGTCTCAGCCTGTGTGGAAAATACCTAGACTATTTTCCAAGCTTTGGTCAACCTTAATCTCTTA
CACCAT
Found at i:23921 original size:30 final size:30
Alignment explanation
Indices: 23887--23948 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
23877 TCGTTAACTC
*
23887 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
* * * *
23917 AAACTTTTGCATATTTACACTTTTACCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
23947 AA
1 AA
23949 GCTCAGGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTACCCCT
Found at i:24989 original size:13 final size:13
Alignment explanation
Indices: 24971--24995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24961 CATGAAAGAA
24971 ATAAAAGCATGAT
1 ATAAAAGCATGAT
24984 ATAAAAGCATGA
1 ATAAAAGCATGA
24996 ATACGAAACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (13 bp):
ATAAAAGCATGAT
Found at i:44479 original size:104 final size:103
Alignment explanation
Indices: 44338--44560 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
44328 GTTGTATAAA
** * *
44338 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
44402 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
44442 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
44507 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
44545 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
44561 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 21 0.19
104 90 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:44610 original size:69 final size:70
Alignment explanation
Indices: 44480--44628 Score: 237
Period size: 69 Copynumber: 2.1 Consensus size: 70
44470 TCATTGGTGG
* *
44480 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAA-GTGAAAAGGGGTTGCTATGTGCTGATTCCCCG
44545 AGGGGT
65 AGGGGT
***
44551 TGCTAAGTGCGATATCCATTGTATATTTGAAA-TGAAAAGGGGTTGCTATGTGCTGATTCCCCGA
1 TGCTAAGTGCGATATCCACCATATATTTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCGA
44615 GGGGT
66 GGGGT
44620 TGCTAAGTG
1 TGCTAAGTG
44629 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 45 0.62
71 28 0.38
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (70 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCGA
GGGGT
Found at i:44624 original size:26 final size:26
Alignment explanation
Indices: 44588--44640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
44578 TGAAATGAAA
* *
44588 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGATGATTCCCCG
44614 AGGGGTTGCTAAGTGATGATTCCCCG
1 AGGGGTTGCTAAGTGATGATTCCCCG
44640 A
1 A
44641 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.21, G:0.34, T:0.28
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGATGATTCCCCG
Found at i:52105 original size:27 final size:27
Alignment explanation
Indices: 52063--52114 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
52053 GAAATGTGAA
*
52063 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
52090 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
52115 GATTCAGCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:52133 original size:103 final size:105
Alignment explanation
Indices: 51883--52148 Score: 432
Period size: 104 Copynumber: 2.6 Consensus size: 105
51873 TTGTATATAA
** *
51883 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
51947 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
51988 A-GGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
52052 TGAAATGTG-AAA-GGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
52090 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
52149 ATAACGGTTA
Statistics
Matches: 151, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
102 27 0.18
103 56 0.37
104 66 0.44
105 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:53416 original size:20 final size:20
Alignment explanation
Indices: 53391--53460 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 20
53381 CTTTTTCCTG
53391 TACCAAAATTTATAAGTATA
1 TACCAAAATTTATAAGTATA
* * * * *
53411 TACCAACCAATTCAACAAATTTC
1 TACCAA--AATT-TATAAGTATA
53434 TAACCAAAATTTATAAGTATA
1 T-ACCAAAATTTATAAGTATA
53455 TACCAA
1 TACCAA
53461 CCAATTCAAC
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
20 11 0.31
21 6 0.17
22 8 0.22
23 6 0.17
24 5 0.14
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (20 bp):
TACCAAAATTTATAAGTATA
Found at i:53419 original size:24 final size:24
Alignment explanation
Indices: 53392--53464 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 24
53382 TTTTTCCTGT
53392 ACCAAAATTTATAAGTATATACCA
1 ACCAAAATTTATAAGTATATACCA
* * * *
53416 ACC--AATTCA-ACA-AAT-TTCTA
1 ACCAAAATTTATA-AGTATATACCA
53436 ACCAAAATTTATAAGTATATACCA
1 ACCAAAATTTATAAGTATATACCA
53460 ACCAA
1 ACCAA
53465 TTCAACAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 6 0.17
21 3 0.09
22 12 0.34
23 3 0.09
24 11 0.31
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.27
Consensus pattern (24 bp):
ACCAAAATTTATAAGTATATACCA
Found at i:53455 original size:44 final size:44
Alignment explanation
Indices: 53392--53478 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
53382 TTTTTCCTGT
53392 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
1 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
53436 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCT
1 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCT
53479 TAACATTCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (44 bp):
ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
Found at i:54081 original size:33 final size:33
Alignment explanation
Indices: 54042--54133 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
54032 GAGGTGTACA
*
54042 TTCCTTTCCAAGTGGTACACACAAAGTATATCT
1 TTCCTTTCCAAGTGGTACACACAAAGTATACCT
* *
54075 TTCCTTTTCATA-TGGTATACACAAAGTATACCT
1 TTCCTTTCCA-AGTGGTACACACAAAGTATACCT
**
54108 AACCTTTCCAAGT-GTACACACAAAGT
1 TTCCTTTCCAAGTGGTACACACAAAGT
54134 GTACATAACC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
32 13 0.26
33 36 0.72
34 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (33 bp):
TTCCTTTCCAAGTGGTACACACAAAGTATACCT
Found at i:54143 original size:32 final size:33
Alignment explanation
Indices: 54044--54157 Score: 110
Period size: 33 Copynumber: 3.5 Consensus size: 33
54034 GGTGTACATT
**
54044 CCTTTCCAAGTGGTACACACAAAGTATATC-TTT
1 CCTTTCCAAGTGGTACACACAAAGTATA-CATAA
* * *
54077 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTGGTACACACAAAGTATACATAA
*
54110 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
*
54142 CCATTT-CAAGTTGTAC
1 CC-TTTCCAAGTGGTAC
54158 CATTTAGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
32 27 0.40
33 40 0.59
34 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTGGTACACACAAAGTATACATAA
Found at i:58977 original size:25 final size:25
Alignment explanation
Indices: 58924--59014 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
58914 CTTCATGTAT
* * *
58924 GCTCATATGAGCTATGAATC-AGTAT
1 GCTCATACGAGCTGTGAATCGAG-AA
*
58949 GCTC-TCACGAGCTGTGAATCGGGAA
1 GCTCAT-ACGAGCTGTGAATCGAGAA
**
58974 GCTCATACGAGCTGCAAATCGAGAA
1 GCTCATACGAGCTGTGAATCGAGAA
58999 GCTCATACGAGCTGTG
1 GCTCATACGAGCTGTG
59015 GTGTGTTTGC
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.02
25 51 0.94
26 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTGTGAATCGAGAA
Found at i:64967 original size:48 final size:48
Alignment explanation
Indices: 64901--65133 Score: 279
Period size: 48 Copynumber: 4.9 Consensus size: 48
64891 ATACTAGGGT
* * * * *
64901 TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGACATCAACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
*
64949 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * * * *
64997 TATGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGC-TTCAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATT-TA
* * * * *
65045 TATGTGAGCCAGTGTAAGACCATGTTTGGTATATGGCATCGACGTTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * *
65093 TATGAGAACTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG
65134 GCATCTCACC
Statistics
Matches: 159, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 2 0.01
48 155 0.97
49 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
Found at i:71918 original size:48 final size:48
Alignment explanation
Indices: 71862--72124 Score: 217
Period size: 48 Copynumber: 5.5 Consensus size: 48
71852 CCAGTCTAAA
* **
71862 ACCATGTTTGGAACATGACATCAACATTTATATGAGACCTAGTGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
* * ** * *
71910 ACCATGTTTTGAACATGGCATCGGCCTCGATATGTGAGCC-AATGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGA-CCTAGTGTAAG
* ** * *
71958 ACCATGTTTGGAACATGGCATCAGTGTTTATATGAAAGCTAGTGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
** * * * *
72006 ACCATGACTGGGACATGGCATCGGCCTCGATATATGAG-CC-AGTGCAAG
1 ACCATGTTTGGAACATGGCATCGGCAT--TTATATGAGACCTAGTGTAAG
* * ** * *
72054 ACCATGTTTGGAACATGACATTGGTGTTTATATGAAAGCTAGTGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
* * *
72102 ACGATGTCTGGGACATGGCATCG
1 ACCATGTTTGGAACATGGCATCG
72125 ACATCTTACC
Statistics
Matches: 164, Mismatches: 45, Indels: 12
0.74 0.20 0.05
Matches are distributed among these distances:
46 7 0.04
47 2 0.01
48 145 0.88
49 3 0.02
50 7 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (48 bp):
ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
Found at i:72008 original size:96 final size:96
Alignment explanation
Indices: 71844--72124 Score: 400
Period size: 96 Copynumber: 2.9 Consensus size: 96
71834 ATACTAGAGT
* * *** * *
71844 TATGTGAGCCAGTCTAAAACCATGTTTGGAACATGACATCAACATTTATATGAGACCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
* * *
71909 GACCATGTTTTGAACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* *
71940 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCAGTGTTTATATGAAAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
*
72005 GACCATGACTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * **
72036 TATATGAGCCAGTGCAAGACCATGTTTGGAACATGACATTGGTGTTTATATGAAAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
*
72101 GACGATGTCTGGGACATGGCATCG
66 GACCATGTCTGGGACATGGCATCG
72125 ACATCTTACC
Statistics
Matches: 164, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 164 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:74515 original size:40 final size:40
Alignment explanation
Indices: 74274--74508 Score: 373
Period size: 40 Copynumber: 5.9 Consensus size: 40
74264 ATTCGGATTG
*
74274 ATAACCGGGCTAAG-CCCGAAGGTATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74313 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74353 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
74393 ATAACCGAGCCAAGTCCCGATGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74433 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74473 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74509 AGCTATATCC
Statistics
Matches: 181, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.07
40 168 0.93
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:79369 original size:28 final size:28
Alignment explanation
Indices: 79329--79449 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
79319 ACTCATCAAG
79329 CTTAGTGCTACATAATCAAGA-TCGCACA
1 CTTAGTGCTACATAATCAA-ACTCGCACA
79357 CTTAGTGCTACATAATCAAACTCGCACA
1 CTTAGTGCTACATAATCAAACTCGCACA
*
79385 CTTAGTGCTATATAATCAAACTCGCACA
1 CTTAGTGCTACATAATCAAACTCGCACA
*
79413 CTTAGTGCTACATAATCAAGCTCGCACA
1 CTTAGTGCTACATAATCAAACTCGCACA
79441 CTTAGTGCT
1 CTTAGTGCT
79450 GTACAATTTA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
27 1 0.01
28 88 0.99
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (28 bp):
CTTAGTGCTACATAATCAAACTCGCACA
Found at i:79415 original size:56 final size:56
Alignment explanation
Indices: 79329--79474 Score: 213
Period size: 56 Copynumber: 2.6 Consensus size: 56
79319 ACTCATCAAG
*
79329 CTTAGTGCTACATAATCAAGA-TCGCACACTTAGTGCTACATAATCAAACTCGCACA
1 CTTAGTGCTATATAATCAA-ACTCGCACACTTAGTGCTACATAATCAAACTCGCACA
*
79385 CTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAGCTCGCACA
1 CTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAACTCGCACA
* * * *
79441 CTTAGTGCTGTACAATTTAAACCCGCACACTTAG
1 CTTAGTGCTATATAA-TCAAACTCGCACACTTAG
79475 CGCCAATCTC
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
55 1 0.01
56 65 0.79
57 16 0.20
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (56 bp):
CTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAACTCGCACA
Found at i:84951 original size:40 final size:40
Alignment explanation
Indices: 84750--84937 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
84740 ATTTGGATTG
*
84750 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
84789 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
84829 ATAACTGGGCCAAGTCCCGAAGGGAATTGTGCGAGTTAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
84869 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
84909 ATAACCGAGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
84938 AGTGAGTAGC
Statistics
Matches: 134, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:93843 original size:46 final size:45
Alignment explanation
Indices: 93774--93942 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
93764 GTGAGCATCT
93774 GAACTCGTTGAGTTGAAGTCCGAGTTCACTTATTGATGCGAATGTCC
1 GAACTCGTTGAGTTG-AGTCCGAGTTCACTTA-TGATGCGAATGTCC
* * * *
93821 GAACTCGTTGAGTTGAGTCCGAG-TC-GTGA-AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G--TCC
* *
93867 GAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATGTCC
* *
93912 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93943 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 32 0.32
46 33 0.33
47 17 0.17
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATGTCC
Found at i:96521 original size:26 final size:26
Alignment explanation
Indices: 96486--96536 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
96476 ATGTGAAAAG
*
96486 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
96512 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
96537 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:96587 original size:104 final size:103
Alignment explanation
Indices: 96409--96671 Score: 392
Period size: 103 Copynumber: 2.6 Consensus size: 103
96399 TTGTATATAA
** *
96409 AGGGGTTGCTGTGTGCTGATT--CCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
96471 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCG
*
96511 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
96576 TGAAATGTGAAAGGGGTTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
** *
96614 A-GGGTTGCTAAGTGCTGATTCCTCCGATTCAGCGGTGGTGCTAAGTGCGA-GTCCACCA
1 AGGGGTTGCTAAGTGCTGATTCC-CCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
96672 ATAACGGTTA
Statistics
Matches: 148, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
102 47 0.32
103 53 0.36
104 47 0.32
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Done.