Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold413
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99573
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Found at i:1617 original size:42 final size:42
Alignment explanation
Indices: 1513--1762 Score: 269
Period size: 42 Copynumber: 5.9 Consensus size: 42
1503 GAGCCTCCAT
* *
1513 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
1556 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
1599 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
1641 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
1683 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
1725 CACCTTGGTGCTTGGATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCC-TCGAGCACCA
1763 AAGCTAAAGT
Statistics
Matches: 173, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
41 17 0.10
42 102 0.59
43 44 0.25
44 10 0.06
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:1999 original size:24 final size:24
Alignment explanation
Indices: 1972--2050 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
1962 CCGGTTAGGT
*
1972 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
1996 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
2020 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
2044 TTCCGGT
1 TCCCGGT
2051 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:2175 original size:43 final size:43
Alignment explanation
Indices: 2055--3065 Score: 985
Period size: 43 Copynumber: 23.9 Consensus size: 43
2045 TCCGGTAGCA
2055 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
2098 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
2140 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
2182 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2225 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
2267 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2310 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
2352 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
2395 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
2438 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2481 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2524 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
2566 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2609 TATGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
2651 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
2694 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
2737 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2780 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * *
2822 TAGGTGC-TGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2864 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
2906 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
2949 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2992 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
3026 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
3066 CCTTGGTGGC
Statistics
Matches: 785, Mismatches: 151, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 28 0.04
42 245 0.31
43 476 0.61
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:2204 original size:85 final size:84
Alignment explanation
Indices: 2055--3065 Score: 721
Period size: 85 Copynumber: 12.0 Consensus size: 84
2045 TCCGGTAGCA
* *
2055 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCT-TGATGTGCGGGAG
* *
2119 CCCCGGACACCATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* ** * *
2140 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
2205 CTCGGGCACCATCGGCAACC
65 CTCGGACACCATCGGCAACC
*
2225 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGC
**
2290 CTCGGACACTGTCGGCAACC
65 CTCGGACACCATCGGCAACC
* * * *
2310 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
2375 CTCGCG-TACCATCGGCAACC
65 CTCG-GACACCATCGGCAACC
* * * ** ** *
2395 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* **
2460 CCTCGGCCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAACC
* * * ** *
2481 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
*
2546 CCTCGGCCACCATCGGC-ACC
64 CCTCGGACACCATCGGCAACC
* ** * * * ** ** ** *
2566 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTATGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
2630 GCCTC-GAGCACCATCGGC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * * * * ** * *
2651 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * *
2715 GGCTCGGGCACCATCGGCAAAC
63 GCCTCGGACACCATCGGCAACC
* ** * ** *
2737 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* *
2802 CCTCGGCCACCATCGGC-TCC
64 CCTCGGACACCATCGGCAACC
** * * * ** *
2822 TAGGTGC-TGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
*
2885 GCCTC-GAGCACCATCGAC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * *** * *
2906 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * * **
2970 GGCTCGGGCACCATCGGTAAAA
63 GCCTCGGACACCATCGGCAACC
* * *
2992 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-CCTTGGT-C-----GTGCGGGAGCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
*
3050 TCGGGCACCATCGGCA
66 TCGGACACCATCGGCA
3066 CCTTGGTGGC
Statistics
Matches: 783, Mismatches: 123, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
77 24 0.03
83 2 0.00
84 86 0.11
85 457 0.58
86 214 0.27
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:2663 original size:299 final size:299
Alignment explanation
Indices: 2126--2860 Score: 1192
Period size: 299 Copynumber: 2.5 Consensus size: 299
2116 GAGCCCCGGA
** * * ** * **
2126 CACCATCGGCAAACTAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
2190 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
*
2254 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
* *
2319 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
*
2384 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
2424 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
2489 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
2554 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTATGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
2619 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
2684 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
2723 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * **
2788 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGC-TGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
2850 CACCATCGGCA
130 CACCATCGGCA
2861 AACTAGGCCC
Statistics
Matches: 407, Mismatches: 27, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
297 29 0.07
298 57 0.14
299 321 0.79
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:3037 original size:34 final size:34
Alignment explanation
Indices: 2994--3072 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
2984 CGGTAAAATA
*
2994 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
3028 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
3062 GGCACCTTGGT
1 GGC-CCTTGGT
3073 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:3099 original size:25 final size:25
Alignment explanation
Indices: 3070--3121 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
3060 TCGGCACCTT
* *
3070 GGTGGCTCGGATGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
3095 GGTGGCTAGGAGGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
3120 GG
1 GG
3122 ACACCATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.10, C:0.21, G:0.52, T:0.17
Consensus pattern (25 bp):
GGTGGCTAGGAGGTGCGGGAGCCTC
Found at i:3153 original size:42 final size:44
Alignment explanation
Indices: 3107--3199 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
3097 TGGCTAGGAG
*
3107 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
3149 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
3193 GTGCGGG
1 GTGCGGG
3200 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:11205 original size:42 final size:42
Alignment explanation
Indices: 11101--11350 Score: 269
Period size: 42 Copynumber: 5.9 Consensus size: 42
11091 GAGCCTCCAT
* *
11101 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
11144 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
11187 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
11229 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
11271 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
11313 CACCTTGGTGCTTGGATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCC-TCGAGCACCA
11351 AAGCTAAAGT
Statistics
Matches: 173, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
41 17 0.10
42 102 0.59
43 44 0.25
44 10 0.06
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:11586 original size:24 final size:24
Alignment explanation
Indices: 11559--11637 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
11549 CCGGTTAGGT
*
11559 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
11583 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
11607 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
11631 TTCCGGT
1 TCCCGGT
11638 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:11839 original size:43 final size:43
Alignment explanation
Indices: 11642--12652 Score: 994
Period size: 43 Copynumber: 23.9 Consensus size: 43
11632 TCCGGTAGCA
11642 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
11685 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
11727 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
11768 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
11811 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
11853 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
11896 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
11938 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
11981 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
12024 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12067 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12110 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
12152 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12195 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
12237 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
12280 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
12323 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12366 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
12408 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
12451 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
12493 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
12536 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12579 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
12613 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12653 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 150, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 10 0.01
42 277 0.35
43 463 0.59
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:11868 original size:85 final size:86
Alignment explanation
Indices: 11642--12652 Score: 994
Period size: 85 Copynumber: 12.0 Consensus size: 86
11632 TCCGGTAGCA
** * *
11642 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
11705 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
11727 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
11789 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
11811 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
11874 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
11896 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
11959 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
11981 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
12046 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
12067 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
12132 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
12152 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
12216 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
12237 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
12301 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
12323 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
12388 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
12408 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
12472 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
12493 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
12557 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
12579 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
12635 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
12653 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 126, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
77 35 0.04
79 1 0.00
80 1 0.00
82 1 0.00
83 7 0.01
84 71 0.09
85 468 0.60
86 202 0.26
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:12175 original size:256 final size:253
Alignment explanation
Indices: 11655--12683 Score: 1058
Period size: 256 Copynumber: 4.1 Consensus size: 253
11645 GCCCTTGGTC
* ** * *
11655 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * ** **
11716 CATCGGCAAACTAAGCCCTTGGTAT-TGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCG
63 CATCGGC-ACCTAGGCCCTTGG-ATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-G
* * ** *
11779 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * ** **
11843 CATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
190 CATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGG
11907 -T
252 AT
* ** * * *
11908 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
11970 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
12034 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
12099 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
190 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
12164 T
253 T
* ** *
12165 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** * * * *
12230 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
* * *
12295 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
130 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
12360 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
195 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
12421 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
12486 CGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCG
66 CGGCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCG
* * *
12550 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
12611 --C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
12669 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
12684 TGGCTAGGAG
Statistics
Matches: 674, Mismatches: 81, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
247 43 0.06
248 23 0.03
250 1 0.00
252 2 0.00
253 8 0.01
254 69 0.10
255 26 0.04
256 433 0.64
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:12472 original size:299 final size:299
Alignment explanation
Indices: 11713--12652 Score: 1209
Period size: 299 Copynumber: 3.2 Consensus size: 299
11703 GAGCCCCGGA
** * ** * **
11713 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
11776 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
11840 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
11905 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
11970 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
12010 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
12075 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
12140 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
12205 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
12270 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
12309 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
12374 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
12437 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
12499 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * *
12562 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
12608 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12653 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 55, Indels: 29
0.87 0.08 0.04
Matches are distributed among these distances:
290 37 0.06
297 29 0.05
298 99 0.17
299 412 0.71
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:12624 original size:34 final size:34
Alignment explanation
Indices: 12581--12659 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
12571 CGGTAAAATA
*
12581 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
12615 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
12649 GGCACCTTGGT
1 GGC-CCTTGGT
12660 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:12686 original size:25 final size:25
Alignment explanation
Indices: 12657--12708 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
12647 TCGGCACCTT
* *
12657 GGTGGCTCGGATGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
12682 GGTGGCTAGGAGGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
12707 GG
1 GG
12709 ACACCATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.10, C:0.21, G:0.52, T:0.17
Consensus pattern (25 bp):
GGTGGCTAGGAGGTGCGGGAGCCTC
Found at i:12740 original size:42 final size:44
Alignment explanation
Indices: 12694--12786 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
12684 TGGCTAGGAG
*
12694 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
12736 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
12780 GTGCGGG
1 GTGCGGG
12787 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:20793 original size:42 final size:42
Alignment explanation
Indices: 20689--20980 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
20679 GAGCCTCCAT
*
20689 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
20732 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
20775 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
20817 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
20859 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
20901 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
20943 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
20981 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:21216 original size:24 final size:24
Alignment explanation
Indices: 21189--21267 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
21179 CCGGTTAGGT
*
21189 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
21213 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
21237 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
21261 TTCCGGT
1 TCCCGGT
21268 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:21469 original size:43 final size:43
Alignment explanation
Indices: 21272--22282 Score: 994
Period size: 43 Copynumber: 23.9 Consensus size: 43
21262 TCCGGTAGCA
21272 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
21315 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
21357 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
21398 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21441 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
21483 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21526 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
21568 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
21611 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
21654 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
21697 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21740 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
21782 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
21825 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
21867 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
21910 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
21953 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
21996 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
22038 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
22081 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
22123 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
22166 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
22209 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
22243 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
22283 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 150, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 10 0.01
42 277 0.35
43 463 0.59
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:21498 original size:85 final size:86
Alignment explanation
Indices: 21272--22282 Score: 994
Period size: 85 Copynumber: 12.0 Consensus size: 86
21262 TCCGGTAGCA
** * *
21272 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
21335 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
21357 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
21419 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
21441 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
21504 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
21526 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
21589 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
21611 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
21676 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
21697 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
21762 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
21782 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
21846 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
21867 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
21931 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
21953 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
22018 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
22038 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
22102 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
22123 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
22187 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
22209 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
22265 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
22283 CCTTGGTGGC
Statistics
Matches: 786, Mismatches: 126, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
77 35 0.04
79 1 0.00
80 1 0.00
82 1 0.00
83 7 0.01
84 71 0.09
85 468 0.60
86 202 0.26
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:21805 original size:256 final size:253
Alignment explanation
Indices: 21285--22313 Score: 1058
Period size: 256 Copynumber: 4.1 Consensus size: 253
21275 GCCCTTGGTC
* ** * *
21285 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * ** **
21346 CATCGGCAAACTAAGCCCTTGGTAT-TGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCG
63 CATCGGC-ACCTAGGCCCTTGG-ATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-G
* * ** *
21409 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * ** **
21473 CATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
190 CATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGG
21537 -T
252 AT
* ** * * *
21538 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
21600 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
21664 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
21729 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
190 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
21794 T
253 T
* ** *
21795 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* ** * * * *
21860 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGT
* * *
21925 GCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
130 GCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
21990 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
195 GC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* *
22051 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
22116 CGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCG
66 CGGCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCG
* * *
22180 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
22241 --C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
22299 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
22314 TGGCTAGGAG
Statistics
Matches: 674, Mismatches: 81, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
247 43 0.06
248 23 0.03
250 1 0.00
252 2 0.00
253 8 0.01
254 69 0.10
255 26 0.04
256 433 0.64
257 69 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:22102 original size:299 final size:299
Alignment explanation
Indices: 21343--22282 Score: 1209
Period size: 299 Copynumber: 3.2 Consensus size: 299
21333 GAGCCCCGGA
** * ** * **
21343 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
21406 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
21470 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
21535 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
21600 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
21640 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
21705 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
21770 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
21835 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
21900 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
21939 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
22004 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
22067 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
22129 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * *
22192 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
22238 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
22283 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 55, Indels: 29
0.87 0.08 0.04
Matches are distributed among these distances:
290 37 0.06
297 29 0.05
298 99 0.17
299 412 0.71
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:22254 original size:34 final size:34
Alignment explanation
Indices: 22211--22289 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
22201 CGGTAAAATA
*
22211 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
22245 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
22279 GGCACCTTGGT
1 GGC-CCTTGGT
22290 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:22316 original size:25 final size:25
Alignment explanation
Indices: 22287--22338 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
22277 TCGGCACCTT
* *
22287 GGTGGCTCGGATGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
22312 GGTGGCTAGGAGGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
22337 GG
1 GG
22339 ACACCATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.10, C:0.21, G:0.52, T:0.17
Consensus pattern (25 bp):
GGTGGCTAGGAGGTGCGGGAGCCTC
Found at i:22370 original size:42 final size:44
Alignment explanation
Indices: 22324--22416 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
22314 TGGCTAGGAG
*
22324 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
22366 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
22410 GTGCGGG
1 GTGCGGG
22417 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:30028 original size:14 final size:14
Alignment explanation
Indices: 30009--30040 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
29999 TCCAATCACC
30009 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
30023 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
30037 GGGC
1 GGGC
30041 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:35133 original size:14 final size:14
Alignment explanation
Indices: 35114--35145 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
35104 TCCAATCACC
35114 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
35128 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
35142 GGGC
1 GGGC
35146 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:36136 original size:42 final size:42
Alignment explanation
Indices: 36032--36317 Score: 272
Period size: 42 Copynumber: 6.9 Consensus size: 42
36022 GAGCCTCCAT
*
36032 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
36075 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
36118 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
36160 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
**
36202 CACC-TCCT--AT-GATGTGC--GAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
36238 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
36280 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
36318 AAGCTAAAGT
Statistics
Matches: 199, Mismatches: 28, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
35 3 0.02
36 19 0.10
37 7 0.04
38 1 0.01
39 1 0.01
40 7 0.04
41 3 0.02
42 104 0.52
43 43 0.22
44 11 0.06
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:36305 original size:120 final size:121
Alignment explanation
Indices: 36090--36308 Score: 300
Period size: 120 Copynumber: 1.8 Consensus size: 121
36080 TTGATGCTTG
36090 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
1 GATGTGC-GGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACC
* * *
36155 ACCGGCAAACTAGGCCCTTGGTTGTGGGGAGCCTCGGAGACCATCGGCACCTCCTAT
65 ACCGGCAAACTAGGCCCATGGATGAGGGGAGCCTCGGAGACCATCGGCACCTCCTAT
* *
36212 GATGTGC-GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACC
1 GATGTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGA-CACC
* * * **
36275 ATCGGC-ACCTTGGTGCATGGATGAGCGGGAGCCT
65 ACCGGCAAACTAGGCCCATGGATGAG-GGGAGCCT
36309 TCAGCACCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
119 14 0.16
120 64 0.75
122 7 0.08
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.19
Consensus pattern (121 bp):
GATGTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCA
CCGGCAAACTAGGCCCATGGATGAGGGGAGCCTCGGAGACCATCGGCACCTCCTAT
Found at i:36553 original size:24 final size:24
Alignment explanation
Indices: 36526--36604 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
36516 CCGGTTAGGT
*
36526 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
36550 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
36574 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
36598 TTCCGGT
1 TCCCGGT
36605 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:36730 original size:43 final size:43
Alignment explanation
Indices: 36609--37619 Score: 985
Period size: 43 Copynumber: 23.9 Consensus size: 43
36599 TCCGGTAGCA
36609 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
36652 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
36694 TAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
36736 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
36779 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
36821 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
36864 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
36906 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
36949 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
36992 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
37035 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
37078 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
37120 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
**
37163 TAGGCCCTTGG-CGTGCGGGAGCCTCTAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
37204 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
37247 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
37290 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
37333 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
37375 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
37418 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
37460 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
37503 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
37546 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
37580 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
37620 CCTTGGTGGC
Statistics
Matches: 783, Mismatches: 153, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 11 0.01
42 275 0.35
43 461 0.59
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:36758 original size:85 final size:84
Alignment explanation
Indices: 36609--37619 Score: 728
Period size: 85 Copynumber: 12.0 Consensus size: 84
36599 TCCGGTAGCA
* *
36609 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCT-TGATGTGCGGGAG
* *
36673 CCCCGGACACCATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* ** *
36694 TAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
36759 CTCGGGCACCATCGGCAACC
65 CTCGGACACCATCGGCAACC
*
36779 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGC
**
36844 CTCGGACACTGTCGGCAACC
65 CTCGGACACCATCGGCAACC
* * * *
36864 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
36929 CTCGCG-TACCATCGGCAACC
65 CTCG-GACACCATCGGCAACC
* * * ** ** *
36949 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* **
37014 CCTCGGCCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAACC
* * * ** *
37035 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
*
37100 CCTCGGCCACCATCGGC-ACC
64 CCTCGGACACCATCGGCAACC
* ** * * * ** * ** **
37120 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCGTGCGGGAG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGATGTGCGGGAG
*
37184 CCTC-TAGCACCATCGGC-ACC
64 CCTCGGA-CACCATCGGCAACC
* ** * * * * * * ** * *
37204 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * *
37268 GGCTCGGGCACCATCGGCAAAC
63 GCCTCGGACACCATCGGCAACC
* ** * ** *
37290 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* *
37355 CCTCGGCCACCATCGGC-TCC
64 CCTCGGACACCATCGGCAACC
** * * * * ** *
37375 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
*
37439 GCCTC-GAGCACCATCGAC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * *** * *
37460 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * * **
37524 GGCTCGGGCACCATCGGTAAAA
63 GCCTCGGACACCATCGGCAACC
* * *
37546 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-CCTTGGT-C-----GTGCGGGAGCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
*
37604 TCGGGCACCATCGGCA
66 TCGGACACCATCGGCA
37620 CCTTGGTGGC
Statistics
Matches: 781, Mismatches: 125, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
77 24 0.03
83 3 0.00
84 76 0.10
85 464 0.59
86 214 0.27
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:37415 original size:128 final size:128
Alignment explanation
Indices: 36609--37619 Score: 977
Period size: 128 Copynumber: 8.0 Consensus size: 128
36599 TCCGGTAGCA
* ** * *
36609 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * ** *
36672 GCCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACC
65 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * *
36736 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTA
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* ** * * **
36800 GCCTCGGGCACCATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * ** *
36864 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * * *
36927 ACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
36992 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
* * *
37057 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * ** *
37120 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-CGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
** * ** * * * * *
37183 GCCTCTAGCACCATCGGCACCTTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
65 GCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
37247 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
** * *
37312 CCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * *
37375 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * ** * *
37439 GCCTCGAGCACCATCGACACCTTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * *
37503 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
*
37568 CCTC-GG--CCA-C--CA--TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
37620 CCTTGGTGGC
Statistics
Matches: 714, Mismatches: 147, Indels: 53
0.78 0.16 0.06
Matches are distributed among these distances:
119 1 0.00
120 33 0.05
122 2 0.00
124 1 0.00
125 3 0.00
126 33 0.05
127 202 0.28
128 337 0.47
129 102 0.14
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (128 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:37444 original size:298 final size:299
Alignment explanation
Indices: 36680--37414 Score: 1192
Period size: 298 Copynumber: 2.5 Consensus size: 299
36670 GAGCCCCGGA
** * ** * **
36680 CACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
36744 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
36808 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
* *
36873 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
*
36938 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
36978 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
37043 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
37108 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
37173 G-CGTGCGGGAGCCTCTAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
37237 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
37276 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
37341 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
37404 CACCATCGGCA
130 CACCATCGGCA
37415 AACTAGGCCC
Statistics
Matches: 407, Mismatches: 27, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
297 35 0.09
298 244 0.60
299 128 0.31
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:37591 original size:34 final size:34
Alignment explanation
Indices: 37548--37626 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
37538 CGGTAAAATA
*
37548 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
37582 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
37616 GGCACCTTGGT
1 GGC-CCTTGGT
37627 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:37654 original size:25 final size:25
Alignment explanation
Indices: 37625--37673 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
37615 CGGCACCTTG
* *
37625 GTGGCTCGGATGTGCGGGAGCCTCA
1 GTGGCTAGGAGGTGCGGGAGCCTCA
37650 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
37674 GGACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (25 bp):
GTGGCTAGGAGGTGCGGGAGCCTCA
Found at i:37707 original size:42 final size:44
Alignment explanation
Indices: 37661--37753 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
37651 TGGCTAGGAG
*
37661 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
37703 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
37747 GTGCGGG
1 GTGCGGG
37754 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:45756 original size:42 final size:42
Alignment explanation
Indices: 45652--45943 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
45642 GAGCCTCCAT
*
45652 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
45695 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
45738 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
45780 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
45822 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
45864 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
45906 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
45944 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:46179 original size:24 final size:24
Alignment explanation
Indices: 46152--46230 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
46142 CCGGTTAGGT
*
46152 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
46176 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
46200 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
46224 TTCCGGT
1 TCCCGGT
46231 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:46312 original size:42 final size:43
Alignment explanation
Indices: 46248--47277 Score: 740
Period size: 43 Copynumber: 24.3 Consensus size: 43
46238 GCCCTTGGTC
*
46248 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
46290 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTACT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-A-T
* * * *
46335 GCT-CTGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 G-TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
46377 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
46419 CGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* ** **
46462 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
46504 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
46547 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
46589 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* ** **
46632 CGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
46675 CGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
46718 CGTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** ** **
46761 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** *
46804 GTGCGGGAGCCTCTAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
46846 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
46888 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
46931 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * *
46974 CGTGCGGGAGCCTCGGCCACCATTGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
47017 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
47059 CGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
47102 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * ** **
47144 CATGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
47187 CGTGCGGGGGCCTCGGCCACCATCGGC--CCTTGGT-C------
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
47222 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
47265 GTGCGGGAGCCTC
1 GTGCGGGAGCCTC
47278 AGTGGCTAGG
Statistics
Matches: 794, Mismatches: 158, Indels: 71
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 7 0.01
37 1 0.00
40 1 0.00
41 4 0.01
42 247 0.31
43 479 0.60
44 9 0.01
45 21 0.03
46 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:46463 original size:85 final size:86
Alignment explanation
Indices: 46235--47248 Score: 946
Period size: 85 Copynumber: 12.0 Consensus size: 86
46225 TCCGGTAGCA
** * *
46235 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
46298 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* * * * ** *
46320 TAAGCCCTTGGTAC-TGCTCTGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCG
1 TAGGCCCTTGGT-CGTG--CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCG
46382 GGAGCCTCGGGCACCATCGGCAACC
62 GGAGCCTCGGGCACCATCGGCAACC
* * ** *
46407 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
46470 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
46492 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
46555 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
46577 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
46642 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
46663 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
46728 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * ** *
46748 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
**
46812 GCCTCTAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
46833 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
46897 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
46919 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
46984 CCTCGGCCACCATTGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
47004 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
47068 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * *
47089 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCATGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
47153 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
47175 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
47231 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
47249 CCTTGGTGGC
Statistics
Matches: 780, Mismatches: 132, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
77 34 0.04
79 1 0.00
80 1 0.00
82 1 0.00
83 3 0.00
84 4 0.01
85 461 0.59
86 207 0.27
87 67 0.09
88 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:46867 original size:256 final size:254
Alignment explanation
Indices: 46377--47277 Score: 1040
Period size: 256 Copynumber: 3.5 Consensus size: 254
46367 GTGCTTCGAT
* ** *
46377 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * ** **
46442 CGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-TC
66 CGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGGAT-
* ** * * * * *
46505 GTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACCA
127 GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCA
* ** * ** *
46568 TCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGT
191 TCGGC-ACCTTGGTGCTTGGAT-GTCCGAGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGT
46632 C
254 C
* * *
46633 GTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
46698 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGATGG
66 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGATGT
** * *
46763 GCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGCCGTGCGGGAGCCTCTAGCACCATCG
129 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCATCG
* * *
46828 GCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTC
194 GCACCTTGGTGCTTGGATGTCCGAGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTC
* * *
46889 GTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
46954 CGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATTGGCTCCTAGGTGCTGGGATGT
66 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGATGT
* *
47019 GCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
129 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCATCG
*
47084 ACACCTTGGTGCTTGGATGTGCCG-GAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTC
194 GCACCTTGGTGCTTGGATGT-CCGAGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTC
* * * *
47145 ATGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
47206 C--C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGT
66 CGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGATGT
47267 GCGGGAGCCTC
129 GCGGGAGCCTC
47278 AGTGGCTAGG
Statistics
Matches: 562, Mismatches: 73, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
247 42 0.07
248 21 0.04
250 1 0.00
252 1 0.00
253 3 0.01
255 4 0.01
256 421 0.75
257 69 0.12
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (254 bp):
GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGATGTGC
GGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGACGTGCGGGAGCCTCGAGCACCATCGGC
ACCTTGGTGCTTGGATGTCCGAGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTC
Found at i:47073 original size:299 final size:299
Alignment explanation
Indices: 46306--47043 Score: 1162
Period size: 299 Copynumber: 2.5 Consensus size: 299
46296 GAGCCCCGGA
* * ** * *
46306 CACCATCGGCAAACTAAGCCCTTGGTAC-TGCTCTGGAGCCTCGGGCGCCATCGGC-ACCTCGGT
1 CACCATCGGCAAACTAAGCCCTTGGT-CGTG--CGGGAGCCTCGGGCACCATCGGCAAAATAGGC
* * * *
46369 GCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTC
63 CCTT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
*
46433 GGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCC
127 GGACACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCC
* *
46498 CTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCG
192 CTTGGCCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCG
* *
46563 TACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
257 CACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
46606 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
46671 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
46736 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
46801 GCCGTGCGGGAGCCTCTAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GCCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
46866 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
46905 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * ** *
46970 TGGTCGTGCGGGAGCCTCGGCCACCATTGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
47033 CACCATCGGCA
130 CACCATCGGCA
47044 AACTAGGCCC
Statistics
Matches: 406, Mismatches: 28, Indels: 10
0.91 0.06 0.02
Matches are distributed among these distances:
298 57 0.14
299 321 0.79
300 28 0.07
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GCCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:47166 original size:299 final size:297
Alignment explanation
Indices: 46237--47248 Score: 1114
Period size: 299 Copynumber: 3.4 Consensus size: 297
46227 CGGTAGCATA
* * * * ** *
46237 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGC-AGGAG
1 GGCCCTTGGT-ATGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA-GAG
* * * * *
46299 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTAC-TGCTCTGGAGCCTCGGGCGCCATCGGC-A
63 GCTCGGGCACCATCGGCAAACTAAGCCCTTGGT-CGTG--CGGGAGCCTCGGGCACCATCGGCAA
** * ** * *
46362 CCTCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
125 AATAGGCCCTT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
46426 TAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAAC
189 GAGCCTCGGACACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAAC
46491 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTT
254 CTAGGCCCTTGGT-GTGCGGGAGCCTCGAGCACCATCGGCACCTT
** * *
46536 GGTGCTTGGATGTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGC
1 GGCCCTTGG-TATGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGC
*
46601 TCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAG
65 TCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAG
*
46666 GCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCT
130 GCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
* *
46731 CGGCCACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGC
195 CGGACACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGC
* *
46796 CCTTGGCCGTGCGGGAGCCTCTAGCACCATCGGCACCTT
260 CCTTGG-TGTGCGGGAGCCTCGAGCACCATCGGCACCTT
** *
46835 GGTGCTTGG-ATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGG
1 GGCCCTTGGTATG--CGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG
46899 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
64 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATA
* * * ** *
46964 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATTGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGC
129 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGC
* * ** * ** *
47027 CTCGGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACC
193 CTCGGACACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACC
* ** * * * *
47089 TTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCTA
255 TAGGCCCTTGG-TGTGCGGGAGCCTCGAGCACCATCGGC-ACCTT
* ** * * ** *
47134 GACCCTTGGTCATGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGC
1 GGCCCTTGGT-ATGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-
*
47198 CTCGGCCACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
64 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
47249 CCTTGGTGGC
Statistics
Matches: 624, Mismatches: 71, Indels: 45
0.84 0.10 0.06
Matches are distributed among these distances:
290 37 0.06
297 2 0.00
298 98 0.16
299 437 0.70
300 46 0.07
301 4 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (297 bp):
GGCCCTTGGTATGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCT
CGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG
CCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
GGACACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCC
CTTGGTGTGCGGGAGCCTCGAGCACCATCGGCACCTT
Found at i:47220 original size:34 final size:34
Alignment explanation
Indices: 47177--47255 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
47167 CGGTAAAATA
*
47177 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
47211 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
47245 GGCACCTTGGT
1 GGC-CCTTGGT
47256 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:47283 original size:25 final size:25
Alignment explanation
Indices: 47254--47302 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
47244 CGGCACCTTG
* *
47254 GTGGCTCGGATGTGCGGGAGCCTCA
1 GTGGCTAGGAGGTGCGGGAGCCTCA
47279 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
47303 GGACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (25 bp):
GTGGCTAGGAGGTGCGGGAGCCTCA
Found at i:47423 original size:14 final size:14
Alignment explanation
Indices: 47404--47435 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
47394 AGGTCATTTA
47404 GCCCAACCAAACTG
1 GCCCAACCAAACTG
47418 GCCCAACCAAACTG
1 GCCCAACCAAACTG
47432 GCCC
1 GCCC
47436 GGTGGTTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:52536 original size:14 final size:14
Alignment explanation
Indices: 52517--52548 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
52507 AGGTCATTTA
52517 GCCCAACCAAACTG
1 GCCCAACCAAACTG
52531 GCCCAACCAAACTG
1 GCCCAACCAAACTG
52545 GCCC
1 GCCC
52549 GGTGGTTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:61030 original size:41 final size:42
Alignment explanation
Indices: 60972--61258 Score: 313
Period size: 41 Copynumber: 6.9 Consensus size: 42
60962 AAGAGCCTCT
* * *
60972 CACCTTGGTGCTCGGATGTGTGGGAGCCTC-AGCACCATCGT
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
61013 AACCTTGATGCTTGGATGTTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATG-TGCGGGAGCCTCGAGCACCATCGG
* * *
61056 CACCTTGGTGCATGGATGT-CGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
61097 CAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
61138 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCA-CATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
61179 CACCTTGGTGCTTGGATGTGC-GGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
61220 CACCTTGGTGCAATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGC-TTGGATGTGCGGGAGCC-TCGAGCACCA
61259 AAGCTAAAGT
Statistics
Matches: 206, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
40 15 0.07
41 118 0.57
42 32 0.16
43 39 0.19
44 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:61517 original size:25 final size:24
Alignment explanation
Indices: 61468--61546 Score: 104
Period size: 24 Copynumber: 3.2 Consensus size: 24
61458 CCGGTTAGGT
* *
61468 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGCGGTGCTCCGGCGAACCG
61492 TCCCGGCGGTGCTCCGGGCGAACCG
1 TCCCGGCGGTGCTCC-GGCGAACCG
* *
61517 TCCCGTCGGTGCTCCGGTGAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
61541 TTCCGG
1 TCCCGG
61547 TAGCATAGGC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
24 26 0.54
25 22 0.46
ACGTcount: A:0.06, C:0.38, G:0.37, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAACCG
Found at i:61697 original size:14 final size:14
Alignment explanation
Indices: 61678--61709 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
61668 AGGTCATTTA
61678 GCCCAACCAAACTG
1 GCCCAACCAAACTG
61692 GCCCAACCAAACTG
1 GCCCAACCAAACTG
61706 GCCC
1 GCCC
61710 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:66044 original size:12 final size:12
Alignment explanation
Indices: 66027--66051 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66017 CATATAACTT
66027 GCAGCAAAGTGG
1 GCAGCAAAGTGG
66039 GCAGCAAAGTGG
1 GCAGCAAAGTGG
66051 G
1 G
66052 ACCACGAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.44, T:0.08
Consensus pattern (12 bp):
GCAGCAAAGTGG
Found at i:66994 original size:42 final size:42
Alignment explanation
Indices: 66745--67034 Score: 265
Period size: 42 Copynumber: 6.9 Consensus size: 42
66735 GAGCCTCCAT
* *
66745 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * * * *
66788 TAACTTGATGCTTAGGACGTACGGGAGCCTCGAGCACCAATCGG
1 CACCTTGGTGCTT-GGATGTGCGGGAGCCTCGAGCACC-ATCGG
* * *
66832 CACCTTGGTGCATGGATGTGCGGGAGCATCGGGACACCA-CGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
66874 CAAACTAGGCCCTT-G-T-TGTGGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
66914 CACCTCGGTGCTAT-GATGTGC-GGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
*
66955 CACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
66997 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCC-TCGAGCACCA
67035 AAGCTAAAGT
Statistics
Matches: 200, Mismatches: 33, Indels: 29
0.76 0.13 0.11
Matches are distributed among these distances:
39 11 0.05
40 20 0.10
41 37 0.19
42 62 0.31
43 50 0.25
44 20 0.10
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:67000 original size:83 final size:84
Alignment explanation
Indices: 66745--67034 Score: 276
Period size: 83 Copynumber: 3.5 Consensus size: 84
66735 GAGCCTCCAT
* * * * * * *
66745 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTCAGCCACCATCGGTAACTTGATGCTTAGGACGTA
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCAGACACCATCGGCAACTTGGTACTT-GGATGTG
66809 CGGGAGCCTCGAGCACCAATCGG
63 CGGGAGCCTCGAGCACC-ATCGG
* * * ** *
66832 CACCTTGGTGCATGGATGTGCGGGAGCATCGGGACACCA-CGGCAAACTAGGCCCTT-G-T-TGT
1 CACCTTGGTGCATGGATGTGCGGGAGCCTC-AGACACCATCGGC-AACTTGGTACTTGGATGTGC
66893 GGGAGCCTCGGAG-ACCATCGG
64 GGGAGCCTC-GAGCACCATCGG
* *
66914 CACCTCGGTGCTAT-GATGTGC-GGAGCCTC-GAGCACCATCGGCACCTTGGTACTTGGATGTGC
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCAGA-CACCATCGGCAACTTGGTACTTGGATGTGC
66976 GGGAGCCTCGAGCACCATCGG
64 GGGAGCCTCGAGCACCATCGG
*
66997 CACCTTGGTGCATGGATGAGCGGGAGCCTTCAG-CACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCAGACACCA
67035 AAGCTAAAGT
Statistics
Matches: 167, Mismatches: 21, Indels: 33
0.76 0.10 0.15
Matches are distributed among these distances:
79 2 0.01
80 13 0.08
81 12 0.07
82 28 0.17
83 50 0.30
84 14 0.08
85 3 0.02
86 21 0.13
87 24 0.14
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (84 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCAGACACCATCGGCAACTTGGTACTTGGATGTGCGG
GAGCCTCGAGCACCATCGG
Found at i:67297 original size:24 final size:24
Alignment explanation
Indices: 67241--67317 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
67231 CCGGTTAGGT
* *
67241 TCCCGGTGGTGCTCCGGCG-ATCG
1 TCCCGGCGGTGCTCCGGCGAACCG
67264 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
* *
67288 TCCCGTCGGTGCTCCGGTGAACCG
1 TCCCGGCGGTGCTCCGGCGAACCG
*
67312 TTCCGG
1 TCCCGG
67318 TAGCATAGGC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 18 0.38
24 29 0.62
ACGTcount: A:0.06, C:0.38, G:0.36, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAACCG
Found at i:67518 original size:43 final size:43
Alignment explanation
Indices: 67323--68467 Score: 1032
Period size: 43 Copynumber: 26.9 Consensus size: 43
67313 TCCGGTAGCA
67323 TAGG-CCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
67363 TTGGTGCTAGGAT-GTGCAGGAGCCCCGGACACCAT-GAGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG-GCAACC
* ** *
67406 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
67447 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
67490 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
67532 TCGGTGCTATGAT-GTGC-GGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
67574 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
67616 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
67659 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
67702 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
67745 TAGGCCCTTGGTCGTTCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
67788 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
67830 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
67873 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
67915 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
67958 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
68001 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
68044 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * *
68086 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACTATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
68129 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
68171 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * **
68214 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
68257 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
68299 TGGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
68341 TTGGTGGCTCGGAT-GTGCGGGAGCCTCGGGC-CGCATCGGC-ACC
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCAC-CATCGGCAACC
* ** * ** * *
68384 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCGTCGGCAA-C
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
68427 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
68468 CCTTGGTGCC
Statistics
Matches: 898, Mismatches: 170, Indels: 71
0.79 0.15 0.06
Matches are distributed among these distances:
40 3 0.00
41 36 0.04
42 318 0.35
43 538 0.60
44 3 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:67546 original size:85 final size:85
Alignment explanation
Indices: 67323--68467 Score: 1027
Period size: 85 Copynumber: 13.5 Consensus size: 85
67313 TCCGGTAGCA
* ** * *
67323 TAGG-CCTTGGTGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTAGGAT-GTGCAGGAG
1 TAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * *
67385 CCCCGGACACCAT-GAGCAAAC
65 CCTCGGGCACCATCG-GCAACC
* * * * ** *
67406 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
67468 GCCTCGGGCACCATCGGCAACC
64 GCCTCGGGCACCATCGGCAACC
* ** *
67490 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGC-GGA
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
67552 GCCTCGGACACTGTCGGCAACC
64 GCCTCGGGCACCATCGGCAACC
* * ** *
67574 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
67637 ACCTCGCGTACCATCGGCAACC
64 GCCTCGGGCACCATCGGCAACC
* * * *
67659 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
67724 CCTCGGCCACCATCGGCAAAA
65 CCTCGGGCACCATCGGCAACC
* * *
67745 TAGGCCCTTGGTCGTTCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
67810 CCTCGGCCACCATCGGC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * * * **
67830 TCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCT-TGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
67895 CCTCGAGCACCATCGGC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * * * * * *
67915 TTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
67980 GCTCGGGCACCATCGGCAAAC
65 CCTCGGGCACCATCGGCAACC
* **
68001 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
68066 CCTCGGCCACCATCGGC-TCC
65 CCTCGGGCACCATCGGCAACC
** * * * *
68086 TAGGTGCTGGGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
68151 CCTCGAGCACCATCGAC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * * * *
68171 TTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
68236 GCTCGGGCACCATCGGCAAAA
65 CCTCGGGCACCATCGGCAACC
* * *
68257 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTGGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
68321 CCTCGGGCACCATCGGC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * * ** * **
68341 TTGGTGGCTCGGATGTGCGGGAGCCTCGGGC-CGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGG
1 TAGG-CCCTTGG-TGTGCGGGAGCCTCGGGCAC-CATCGGCAACCTAGG-CCCTTGGTCGTGCGG
* *
68404 GAGCCTCGGACACCGTCGGCAA-C
62 GAGCCTCGGGCACCATCGGCAACC
* **
68427 TTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TGTGCGGGAGCCTCGGGCA-CCATCGGCA
68468 CCTTGGTGCC
Statistics
Matches: 892, Mismatches: 145, Indels: 46
0.82 0.13 0.04
Matches are distributed among these distances:
83 5 0.01
84 158 0.18
85 473 0.53
86 254 0.28
87 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGCAACC
Found at i:67997 original size:256 final size:253
Alignment explanation
Indices: 67460--68467 Score: 1161
Period size: 256 Copynumber: 3.9 Consensus size: 253
67450 GTGCTTCGAT
* **
67460 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * ** **
67525 CGGCACCTCGGTGCTATGAT-GTGC-GGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-TC
66 CGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGGAT-
* * ** * * * *
67587 GTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCA
127 GTGCGGGAGCCTCGGA-CACTATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCA
* ** * ** * *
67650 TCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGT
190 TCGGC-ACCTTGGTGCTTGGAT-GTCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
67714 C
253 C
* * * *
67715 GTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTTCGGGAGCCTCGGACACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
67780 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGATGG
66 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGATGT
*
67845 GCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
129 GCGGGAGCCTCGGACACTATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
* *
67910 GCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTC
193 GCACCTTGGTGCTTGGATGTCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
67971 GTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
68036 CGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGATGT
66 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGATGT
*
68101 GCGGGAGCCTCGGACACTATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
129 GCGGGAGCCTCGGACACTATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCG
* *
68166 ACACCTTGGTGCTTGGATGTGCCG-GAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTC
193 GCACCTTGGTGCTTGGATGT-CCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68227 GTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCAT
1 GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
68292 CGGCACCTGGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGT
66 CGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGATGT
* * * ** * ** *
68357 GCGGGAGCCTCGGGC-CGCATCGGCACCTCGGTGGCTAGGAGGTGCGGGAGCCTCG-GACACCGT
129 GCGGGAGCCTCGGACAC-TATCGGCACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGAG-CACCAT
* * * *
68420 CGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCCATCGGCA
191 CGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGGGCA-CCATCGGCA
68468 CCTTGGTGCC
Statistics
Matches: 656, Mismatches: 81, Indels: 30
0.86 0.11 0.04
Matches are distributed among these distances:
255 121 0.18
256 468 0.71
257 67 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGATGTGC
GGGAGCCTCGGACACTATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCA
CCTTGGTGCTTGGATGTCCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:76489 original size:42 final size:42
Alignment explanation
Indices: 76385--76674 Score: 301
Period size: 42 Copynumber: 6.9 Consensus size: 42
76375 GAGCCTCCAT
*
76385 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
76428 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
76471 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
76513 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
76555 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
76597 CACCTT-G-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
76637 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
76675 AAGCTAAAGT
Statistics
Matches: 207, Mismatches: 26, Indels: 28
0.79 0.10 0.11
Matches are distributed among these distances:
39 1 0.00
40 36 0.17
41 17 0.08
42 99 0.48
43 43 0.21
44 11 0.05
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:76909 original size:24 final size:24
Alignment explanation
Indices: 76882--76960 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
76872 CCGGTTAGGT
*
76882 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
76906 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
76930 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
76954 TTCCGGT
1 TCCCGGT
76961 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:77042 original size:42 final size:43
Alignment explanation
Indices: 76978--78117 Score: 837
Period size: 43 Copynumber: 27.2 Consensus size: 43
76968 GCCCTTGGTC
*
76978 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
77020 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-AT
* * *
77064 -TGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
77104 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
77146 CGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* ** **
77189 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
77231 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
77274 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
77316 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* ** **
77359 CGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
77402 CGT-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
77444 CGTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
77487 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
77529 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
77572 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
77614 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
77657 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
77700 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * **
77743 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
77785 CGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
77828 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * ** **
77870 CGTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
77913 CGTGCGGGGGCCTCGGCCACCATCGGC--CCTTGGT-C------
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
77948 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* *
77991 GTGC-GGAGCCTCGGGCAGCC-TCGG-----T--G-GCTAGGAG
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTGCTTGGAT
* *
78025 GTGCGGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
78067 GTGCGGGAGCCTCGGGCACCCATCGGC-ACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTG-CTTGGAT
78111 GTGCGGG
1 GTGCGGG
78118 CTAAAGAAGA
Statistics
Matches: 894, Mismatches: 153, Indels: 100
0.78 0.13 0.09
Matches are distributed among these distances:
34 36 0.04
35 23 0.03
36 1 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 3 0.00
41 15 0.02
42 346 0.39
43 452 0.51
44 15 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:77191 original size:85 final size:86
Alignment explanation
Indices: 76965--77974 Score: 985
Period size: 85 Copynumber: 12.0 Consensus size: 86
76955 TCCGGTAGCA
** * *
76965 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
77028 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
77050 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
77112 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
77134 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
77197 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
77219 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
77282 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
77304 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
77369 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
77390 TAGGCCCTTGGTCGT-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
77454 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * **
77474 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
77538 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
77559 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
77623 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
77645 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
77710 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
77730 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
77794 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
77815 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
77879 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
77901 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
77957 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
77975 CCTTGGTGGC
Statistics
Matches: 784, Mismatches: 126, Indels: 38
0.83 0.13 0.04
Matches are distributed among these distances:
77 35 0.04
79 1 0.00
80 1 0.00
82 1 0.00
83 7 0.01
84 78 0.10
85 525 0.67
86 136 0.17
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:77356 original size:213 final size:212
Alignment explanation
Indices: 76965--78117 Score: 901
Period size: 213 Copynumber: 5.5 Consensus size: 212
76955 TCCGGTAGCA
* * * ** * *
76965 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * ** *
77028 GCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT-TGC-GGAGCCTCGGGCGCCATCGGC-AC
65 GCCTCGGGCACCATCGGC-ACCTAGGTGCTTGG-ATGTGCGGGAGCCTC-GG-ACCATCGGCAAC
* ** * * *
77090 CTCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGT
126 CTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGG
*
77154 AGCCTCGGGCACCATCGGC-ACC
190 AGCCTCGGGCACCATCGACAACC
* ** ** *
77176 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * *
77240 GCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACCATCGGCAACCT
65 GCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCG-G-ACCATCGGCAACCT
* * *
77305 AGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGC
128 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
* * **
77370 CTCGGCCACCATCGGCAAAA
193 CTCGGGCACCATCGACAACC
*
77390 TAGGCCCTTGGTCGT-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
* * * *
77454 CCTCGGCCACCATCGGCACCTCGGTGCTAT-GATGGGCGGGAGCCTCGGACACTGTCGGCAACCT
66 CCTCGGGCACCATCGGCACCTAGGTGCT-TGGATGTGCGGGAGCCTCGGAC-C-ATCGGCAACCT
* * * ** * * *
77518 AGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTCCGAGAA
128 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAG
*
77581 CCTCGCGCACCATCGACAACC
192 CCTCGGGCACCATCGACAACC
* * * * *
77602 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
** ** *
77667 CCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGG--ACCATCGGCAACC
** * *
77730 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
127 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
*
77794 GCCTCGAGCACCATCGAC-ACC
191 GCCTCGGGCACCATCGACAACC
* ** * * * * * *
77815 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTT-GATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * ** ** *
77879 GGCTCGGGCACCATCGGTAAAATAGGCCCTTGG-TCGTGCGGGGGCCTCGG-CCA-C--C-A--T
65 GCCTCGGGCACCATCGG-CACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACCATCGGCAACCT
* * * ** *
77936 CGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT-GTGC-GGA
128 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGG-CCCTTGG-TCGTGCGGGA
*
77998 GCCTCGGGCAGCC-TCG-----G
191 GCCTCGGGCA-CCATCGACAACC
* * * **
78015 T-GG--CTAGGA-GGTGCGGGAGCCTCGGACACCATCGGC-AACTTGGTGCTTGGAT-GTGCGGG
1 TAGGCCCT-TGATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGG
* *
78074 AGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGATGTGCGGG
64 AGCCTCGGGCA-CCATCGGCACCTAGGTG-CTTGGATGTGCGGG
78118 CTAAAGAAGA
Statistics
Matches: 770, Mismatches: 137, Indels: 84
0.78 0.14 0.08
Matches are distributed among these distances:
196 29 0.04
197 46 0.06
198 1 0.00
199 2 0.00
200 1 0.00
204 21 0.03
205 42 0.05
206 1 0.00
207 1 0.00
209 1 0.00
210 5 0.01
211 49 0.06
212 96 0.12
213 402 0.52
214 70 0.09
215 1 0.00
216 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (212 bp):
TAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACCATCGGCAACCTAGG
CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTC
GGGCACCATCGACAACC
Found at i:77603 original size:298 final size:299
Alignment explanation
Indices: 77036--77769 Score: 1192
Period size: 298 Copynumber: 2.5 Consensus size: 299
77026 GAGCCCCGGA
** * ** * **
77036 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
77099 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
*
77163 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
* *
77228 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
*
77293 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
77333 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
77398 TGGTCGT-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
77462 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
77527 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
77592 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
77631 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
77696 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
77759 CACCATCGGCA
130 CACCATCGGCA
77770 AACTAGGCCC
Statistics
Matches: 406, Mismatches: 26, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
297 29 0.07
298 345 0.85
299 32 0.08
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:77946 original size:34 final size:34
Alignment explanation
Indices: 77903--77981 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
77893 CGGTAAAATA
*
77903 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
77937 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
77971 GGCACCTTGGT
1 GGC-CCTTGGT
77982 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:77995 original size:77 final size:77
Alignment explanation
Indices: 77914--78101 Score: 229
Period size: 77 Copynumber: 2.4 Consensus size: 77
77904 GCCCTTGGTC
* * * *
77914 GTGCGGGGGCCTCGGCCA-CCATCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
1 GTGCGGGAGCCTCGGGCACCCATCGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACT
77978 TGGTGGCTCGGAT
66 TGGT-GCTCGGAT
* ** * **
77991 GTGC-GGAGCCTCGGGCAGCC-TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAAC
1 GTGCGGGAGCCTCGGGCACCCATCGG-CCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAC
*
78054 TTGGTGCTTGGAT
65 TTGGTGCTCGGAT
78067 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGT
1 GTGCGGGAGCCTCGGGCACCCATCGGC-CCTTGGT
78102 GCCTGGGATG
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
76 26 0.29
77 57 0.63
78 8 0.09
ACGTcount: A:0.12, C:0.31, G:0.39, T:0.18
Consensus pattern (77 bp):
GTGCGGGAGCCTCGGGCACCCATCGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACT
TGGTGCTCGGAT
Found at i:77996 original size:43 final size:43
Alignment explanation
Indices: 77948--78117 Score: 189
Period size: 42 Copynumber: 4.2 Consensus size: 43
77938 GCCCTTGGTC
*
77948 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* *
77991 GTGC-GGAGCCTCGGG---CA---G--CCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * *
78025 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* *
78067 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTTGGTGGCTAGGAT
78111 GTGCGGG
1 GTGCGGG
78118 CTAAAGAAGA
Statistics
Matches: 104, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
34 17 0.16
35 10 0.10
36 1 0.01
38 2 0.02
39 2 0.02
41 1 0.01
42 34 0.33
43 24 0.23
44 13 0.12
ACGTcount: A:0.12, C:0.28, G:0.41, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
Found at i:78029 original size:34 final size:34
Alignment explanation
Indices: 77971--78049 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
77961 GGGCACCATC
* * *
77971 GGCACCTTGGTGGCTCGGATGTGC-GGAGCCTCG
1 GGCACCTCGGTGGCTAGGAGGTGCGGGAGCCTCG
78004 GGCAGCCTCGGTGGCTAGGAGGTGCGGGAGCCTCG
1 GGCA-CCTCGGTGGCTAGGAGGTGCGGGAGCCTCG
*
78039 GACACCATCGG
1 GGCACC-TCGG
78050 CAACTTGGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 4 0.10
34 19 0.49
35 16 0.41
ACGTcount: A:0.13, C:0.28, G:0.43, T:0.16
Consensus pattern (34 bp):
GGCACCTCGGTGGCTAGGAGGTGCGGGAGCCTCG
Found at i:86120 original size:42 final size:42
Alignment explanation
Indices: 86016--86307 Score: 310
Period size: 42 Copynumber: 6.9 Consensus size: 42
86006 GAGCCTCCAT
*
86016 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
86059 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
86102 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
86144 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
86186 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
86228 CACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
86270 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
86308 AAGCTAAAGT
Statistics
Matches: 209, Mismatches: 28, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
41 16 0.08
42 139 0.67
43 43 0.21
44 11 0.05
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:86544 original size:24 final size:24
Alignment explanation
Indices: 86517--86595 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
86507 CCGGTTAGGT
*
86517 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
86541 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
86565 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
86589 TTCCGGT
1 TCCCGGT
86596 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:86746 original size:14 final size:14
Alignment explanation
Indices: 86727--86758 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
86717 AGGTCATTTA
86727 GCCCAACCAAACTG
1 GCCCAACCAAACTG
86741 GCCCAACCAAACTG
1 GCCCAACCAAACTG
86755 GCCC
1 GCCC
86759 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:91872 original size:14 final size:14
Alignment explanation
Indices: 91853--91884 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
91843 AGGTCATTTA
91853 GCCCAACCAAACTG
1 GCCCAACCAAACTG
91867 GCCCAACCAAACTG
1 GCCCAACCAAACTG
91881 GCCC
1 GCCC
91885 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:92454 original size:43 final size:43
Alignment explanation
Indices: 92388--93342 Score: 943
Period size: 43 Copynumber: 22.6 Consensus size: 43
92378 ACACTAGGAT
* * * * * *
92388 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
92431 TTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
92473 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
92516 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* **
92558 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
92601 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
92643 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
92686 GTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
92729 GTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
92772 GT-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
92814 GTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * **
92856 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
92899 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
92941 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
92984 GTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
**
93027 GTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
93070 GTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
93112 GTGCGGGAGCCTCGGACA-CATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
93154 GTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
93196 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
93239 GTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
93282 GTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
93316 GTGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
93343 CCTTGGTGGC
Statistics
Matches: 746, Mismatches: 136, Indels: 62
0.79 0.14 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 4 0.01
38 1 0.00
39 1 0.00
40 4 0.01
41 8 0.01
42 291 0.39
43 410 0.55
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:92528 original size:85 final size:86
Alignment explanation
Indices: 92388--93342 Score: 943
Period size: 85 Copynumber: 11.3 Consensus size: 86
92378 ACACTAGGAT
* * * * * ** *
92388 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* ** *
92453 CGGC-ACCTCGGTGCTTCGAT-
66 CGGCAACCTAGGCCCTT-GGTC
92473 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* ** *
92538 CGGC-ACCTCGGTGCTATGAT-
66 CGGCAACCTAGGCCCT-TGGTC
* ** *
92558 GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* **
92623 CGGC-ACCTTGGTGCTTGGAT-
66 CGGCAACCTAGGCCCTTGG-TC
* * * * * *
92643 GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
92708 CGGCAAACTAAGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* ** *
92729 GTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGT-CGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
92793 CGGCAAACTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * ** * * * **
92814 GTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
92877 TCGGCAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * ** * * * *
92899 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
*
92962 TCGACAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * * *
92984 GTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
**
93049 CGGCAAAATAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * ** * *
93070 GTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACA-CA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
*
93132 TCGGCAAACTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * * ** * *
93154 GTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
*
93217 TCGGCAACCTAGACCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * ** *
93239 GTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
93300 C--C-A--TCGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
93316 GTGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
93343 CCTTGGTGGC
Statistics
Matches: 741, Mismatches: 116, Indels: 34
0.83 0.13 0.04
Matches are distributed among these distances:
77 36 0.05
79 1 0.00
80 1 0.00
82 1 0.00
83 3 0.00
84 85 0.11
85 478 0.65
86 136 0.18
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:93162 original size:298 final size:299
Alignment explanation
Indices: 92404--93342 Score: 1218
Period size: 298 Copynumber: 3.2 Consensus size: 299
92394 GAGCCCCGGA
** * ** * **
92404 CACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * *
92468 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
92532 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
92597 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
92662 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
92702 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
92767 TGGTCGT-CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
*
92831 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
92896 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
92961 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
93000 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
93065 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
93128 CA-CATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
93189 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* ** * *
93252 GGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
93298 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
93343 CCTTGGTGGC
Statistics
Matches: 577, Mismatches: 53, Indels: 31
0.87 0.08 0.05
Matches are distributed among these distances:
289 37 0.06
297 51 0.09
298 457 0.79
299 32 0.06
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:93309 original size:34 final size:34
Alignment explanation
Indices: 93271--93349 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
93261 CGGCAAAATA
*
93271 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
93305 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
93339 GGCACCTTGGT
1 GGC-CCTTGGT
93350 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:93363 original size:77 final size:75
Alignment explanation
Indices: 93230--93461 Score: 219
Period size: 77 Copynumber: 3.1 Consensus size: 75
93220 GCAACCTAGA
* * * * ** *
93230 CCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGGGCCT
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTTGGTGCTTGGAT-GTGCGGGAGCCT
93294 CGGCCACCATCGG
64 CGG-CACCATCGG
* *
93307 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGT-GCTTGGATGTGCGGGAGCCTC
*
93372 GG----GT-GG
65 GGCACCATCGG
* ** *
93378 --CTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTC-
93441 GGCACCCATCGG
65 GGCA-CCATCGG
93453 CACCTTGGT
1 C-CCTTGGT
93462 GCCTGGGATG
Statistics
Matches: 124, Mismatches: 19, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
68 20 0.16
69 38 0.31
71 2 0.02
72 1 0.01
74 1 0.01
75 2 0.02
76 4 0.03
77 51 0.41
78 5 0.04
ACGTcount: A:0.13, C:0.30, G:0.38, T:0.19
Consensus pattern (75 bp):
CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCG
GCACCATCGG
Found at i:93376 original size:26 final size:26
Alignment explanation
Indices: 93347--93399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
93337 TCGGCACCTT
* *
93347 GGTGGCTCGGATGTGCGGGAGCCTCG
1 GGTGGCTAGGAGGTGCGGGAGCCTCG
93373 GGTGGCTAGGAGGTGCGGGAGCCTCG
1 GGTGGCTAGGAGGTGCGGGAGCCTCG
93399 G
1 G
93400 ACACCATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.09, C:0.21, G:0.53, T:0.17
Consensus pattern (26 bp):
GGTGGCTAGGAGGTGCGGGAGCCTCG
Found at i:93432 original size:42 final size:44
Alignment explanation
Indices: 93385--93477 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
93375 TGGCTAGGAG
*
93385 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
93427 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
93471 GTGCGGG
1 GTGCGGG
93478 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Done.