genome.fa.s456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold615
Parameters: 2 7 7 80 10 50 1000
Length:  96016

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2588--2627	20	2.0	20	85	9	55	45	0	2	52	1.14
3070--3101	11	2.8	11	95	4	55	78	3	0	18	0.89
7484--7561	37	2.1	36	86	6	104	26	29	19	24	1.98
7681--8058	47	8.1	47	91	3	586	29	30	8	31	1.88
11496--11547	25	2.1	25	82	7	61	30	28	7	32	1.85
11715--12026	80	3.9	80	89	1	439	24	25	23	26	2.00
11710--11986	40	6.9	40	93	0	446	24	26	23	25	2.00
11715--12018	120	2.5	119	88	2	457	24	25	23	26	2.00
12375--12453	29	2.7	29	86	5	106	27	32	15	24	1.95
12435--12536	42	2.4	43	98	1	197	26	36	15	21	1.93
13096--13125	9	3.3	9	100	0	60	36	33	20	10	1.86
14564--14597	13	2.6	13	90	0	50	32	5	14	47	1.69
17293--17372	22	3.7	21	73	11	72	38	8	1	51	1.41
23626--23666	21	2.0	21	90	0	64	29	21	29	19	1.98
27613--27861	50	4.8	50	85	4	284	20	29	24	26	1.99
27612--27861	100	2.4	104	88	6	357	20	29	24	26	1.99
27956--27987	13	2.5	13	94	0	55	56	12	0	31	1.37
28199--28256	30	1.9	30	89	0	89	31	24	3	41	1.71
35195--35443	50	4.8	50	85	4	284	20	29	24	26	1.99
35194--35443	100	2.4	104	88	6	357	20	29	24	26	1.99
35538--35569	13	2.5	13	94	0	55	56	12	0	31	1.37
35781--35838	30	1.9	30	89	0	89	31	24	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38189--38282	20	4.7	19	74	11	73	42	18	25	13	1.87
39757--40153	214	1.9	214	83	3	530	48	16	4	30	1.66
46792--46868	38	2.0	38	90	5	120	24	19	18	37	1.94
52834--53160	85	3.9	85	90	1	478	36	23	17	22	1.95
53442--53501	30	2.0	30	87	12	88	36	20	10	33	1.86
57691--57745	22	2.5	23	79	5	60	30	5	20	43	1.74
65232--65265	17	1.9	17	88	5	50	44	5	5	44	1.52
66811--67066	132	1.9	132	91	0	422	26	22	17	32	1.96
66992--67175	44	4.2	44	89	1	271	27	26	15	29	1.96
69678--69820	72	2.0	71	93	1	241	27	18	18	34	1.95
73461--73539	24	3.3	24	85	5	106	20	35	37	6	1.78
73748--74039	42	6.9	42	82	8	335	19	34	28	17	1.95
81943--82035	42	2.2	43	90	3	143	19	39	27	12	1.88
82023--82071	25	2.0	25	91	0	80	18	46	22	12	1.82
82048--83090	43	24.6	42	76	8	828	18	33	32	16	1.93
82070--82148	34	2.3	34	93	2	131	18	37	35	7	1.80
82048--82948	256	3.5	254	85	4	1065	18	33	31	16	1.93
82282--83019	299	2.5	298	91	2	1169	18	32	32	16	1.93
82112--83090	85	11.5	85	81	4	906	18	33	32	16	1.93
83095--83173	24	3.3	24	85	5	106	20	35	37	6	1.78
83399--83637	42	5.6	42	79	9	263	20	35	27	16	1.94
87037--87130	48	2.0	48	83	8	120	40	23	12	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89319--89387	23	3.0	23	60	19	54	14	43	15	26	1.85
89598--89691	48	2.0	48	83	8	120	40	23	12	23	1.89
94715--94807	42	2.2	43	90	3	143	19	39	27	12	1.88
94795--94843	25	2.0	25	91	0	80	18	46	22	12	1.82
94820--95858	43	24.6	42	76	8	849	17	33	32	16	1.93
94842--94920	34	2.3	34	93	2	131	18	37	35	7	1.80
94928--95845	85	10.8	84	82	5	727	17	33	32	16	1.93
95054--95787	299	2.5	298	92	2	1181	17	32	32	16	1.93
95869--95930	24	2.6	24	92	0	97	17	33	40	8	1.79

Tables:   1

The End!