genome.fa.s458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold584
Parameters: 2 7 7 80 10 50 1000
Length:  81400

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812--1901	43	2.2	40	84	9	110	20	38	27	13	1.90
1974--2501	41	13.0	43	69	15	207	18	30	32	17	1.95
2013--2490	244	2.0	245	82	12	601	18	31	32	17	1.94
2013--2482	81	5.8	80	74	16	330	17	31	32	18	1.94
5493--5546	23	2.5	20	78	18	63	31	3	20	44	1.69
10613--10666	23	2.5	20	78	18	63	31	3	20	44	1.69
18126--18218	42	2.2	43	90	3	143	19	39	27	12	1.88
18206--18254	25	2.0	25	91	0	80	18	46	22	12	1.82
18231--19269	43	24.6	42	76	8	849	17	33	32	16	1.93
18253--18331	34	2.3	34	93	2	131	18	37	35	7	1.80
18339--19256	85	10.8	84	82	5	727	17	33	32	16	1.93
18260--19269	128	8.0	128	77	6	920	17	33	32	16	1.93
18465--19198	298	2.5	298	92	2	1181	17	32	32	16	1.93
19274--19352	24	3.3	24	85	5	106	20	35	37	6	1.78
19561--19852	42	6.9	42	82	8	335	19	34	28	17	1.95
27753--27845	42	2.2	43	90	3	143	19	39	27	12	1.88
27833--27881	25	2.0	25	91	0	80	18	46	22	12	1.82
27858--28895	43	24.6	42	76	8	849	17	33	32	16	1.93
27880--27958	34	2.3	34	93	2	131	18	37	35	7	1.80
27966--28882	85	10.8	84	82	5	725	17	33	32	16	1.93
27887--28895	128	8.0	128	77	6	920	17	33	32	16	1.93
28092--28824	298	2.5	298	92	2	1181	17	33	32	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28900--28978	24	3.3	24	85	5	106	20	35	37	6	1.78
29187--29478	42	6.9	42	82	8	335	19	34	28	17	1.95
37380--37472	42	2.2	43	90	3	143	19	39	27	12	1.88
37460--37508	25	2.0	25	91	0	80	18	46	22	12	1.82
37485--38523	43	24.6	42	76	8	840	18	33	32	16	1.93
37507--37585	34	2.3	34	93	2	131	18	37	35	7	1.80
37593--38510	85	10.8	84	82	5	718	17	33	32	16	1.93
37514--38523	128	8.0	128	77	6	911	17	33	32	16	1.93
37719--38452	298	2.5	298	91	2	1172	17	32	32	16	1.93
38528--38606	24	3.3	24	85	5	106	20	35	37	6	1.78
38815--39064	42	5.9	42	79	9	269	20	34	28	17	1.95
46967--47059	42	2.2	43	90	3	143	19	39	27	12	1.88
47047--47095	25	2.0	25	91	0	80	18	46	22	12	1.82
47072--48111	43	24.6	42	77	8	858	18	33	32	16	1.93
47094--47172	34	2.3	34	93	2	131	18	37	35	7	1.80
47180--48098	85	10.8	84	82	5	736	17	33	32	16	1.93
47072--47972	256	3.6	254	85	4	1085	17	33	32	16	1.93
47306--48040	299	2.5	298	92	2	1190	17	32	32	16	1.93
48116--48194	24	3.3	24	85	5	106	20	35	37	6	1.78
48403--48652	42	5.9	42	79	9	269	20	34	28	17	1.95
56555--56647	42	2.2	43	90	3	143	19	39	27	12	1.88
56635--56683	25	2.0	25	91	0	80	18	46	22	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56660--57700	43	24.6	42	77	7	858	18	33	31	16	1.93
56682--56760	34	2.3	34	93	2	131	18	37	35	7	1.80
56660--57560	256	3.6	254	85	4	1085	17	33	32	16	1.93
56894--57629	299	2.5	298	92	1	1190	18	32	32	16	1.93
56724--57700	85	11.5	86	83	2	933	18	33	32	16	1.93
57705--57783	24	3.3	24	85	5	106	20	35	37	6	1.78
57992--58241	42	5.9	42	79	9	269	20	34	28	17	1.95
66144--66236	42	2.2	43	90	3	143	19	39	27	12	1.88
66224--66272	25	2.0	25	91	0	80	18	46	22	12	1.82
66249--67289	43	24.6	42	77	7	867	18	33	31	16	1.93
66271--66349	34	2.3	34	93	2	131	18	37	35	7	1.80
66249--67149	256	3.6	254	85	4	1085	17	33	32	16	1.93
66483--67218	299	2.5	298	92	1	1199	17	33	32	16	1.93
66313--67289	85	11.5	86	83	2	942	17	33	32	16	1.93
67294--67372	24	3.3	24	85	5	106	20	35	37	6	1.78
67581--67830	42	5.9	42	79	9	269	20	34	28	17	1.95
75731--75823	42	2.2	43	90	3	143	19	39	27	12	1.88
75809--75860	25	2.1	25	92	0	86	17	51	21	9	1.73
75834--76876	43	24.7	42	77	7	862	18	33	31	16	1.93
75858--75936	34	2.3	34	93	2	131	18	37	35	7	1.80
75834--76736	256	3.6	254	85	4	1089	17	33	32	16	1.92
76070--76805	299	2.5	298	92	1	1190	17	32	32	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75900--76876	85	11.5	86	83	2	933	17	33	32	16	1.93
76881--76959	24	3.3	24	85	5	106	20	35	37	6	1.78
77167--77416	42	5.9	42	79	9	269	20	34	28	17	1.95

Tables:   1

The End!