Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold554
Parameters: 2 7 7 80 10 50 1000
Length:  70213

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11025--11057
3
11.0
3
100
0
66
66
0
0
33
0.92
11179--11229
3
17.3
3
75
4
50
60
3
1
33
1.26
16000--16053
27
2.0
27
92
0
90
22
33
37
7
1.82
16143--16183
21
1.9
22
90
5
66
70
0
26
2
0.99
22376--22595
106
2.1
107
89
5
338
29
8
6
55
1.56
22485--23036
142
3.9
141
86
5
747
26
6
8
58
1.52
22485--23047
285
2.0
280
87
4
801
27
6
7
58
1.51
22932--22980
14
3.4
15
77
8
57
34
4
4
57
1.37
23506--23539
12
2.8
12
95
0
59
0
20
0
79
0.73
23469--23543
26
3.0
25
79
12
73
0
26
1
72
0.93
23509--23539
6
5.2
6
92
0
53
0
19
0
80
0.71
23575--23613
16
2.4
16
91
4
60
0
35
0
64
0.94
25093--25131
19
2.0
20
90
5
62
20
0
7
71
1.10
25112--25157
25
1.9
23
86
8
65
28
0
8
63
1.24
27845--28237
209
1.9
213
91
3
652
40
10
7
40
1.68
35832--35886
27
2.0
27
96
0
101
27
9
7
56
1.57
37761--37809
15
3.1
16
80
11
57
77
2
2
18
0.96
37761--37804
21
2.1
21
91
0
70
79
2
2
15
0.93
42358--42394
18
2.1
18
94
0
65
27
8
16
48
1.74
42817--42846
14
2.1
14
93
0
51
33
0
0
66
0.92
43212--43241
15
2.0
15
100
0
60
13
33
26
26
1.93
48259--48303
13
3.5
13
84
0
63
37
31
8
22
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48733--48842
20
5.9
18
76
18
93
67
0
1
30
1.07
48777--48842
10
6.8
9
81
14
78
71
1
1
25
1.04
48777--48842
30
2.2
29
89
7
98
71
1
1
25
1.04
49379--49416
10
3.8
10
80
13
51
28
10
0
60
1.30
49340--49421
20
4.3
19
76
14
73
30
6
2
60
1.33
49334--49480
58
2.5
56
76
17
138
29
4
2
62
1.29
49334--49492
19
8.3
19
68
18
80
30
4
2
62
1.27
49399--49490
40
2.3
39
85
5
114
29
3
2
65
1.20
49334--49490
9
16.2
9
67
22
63
29
4
2
63
1.28
49439--49524
19
4.6
18
74
9
73
30
2
1
66
1.12
54313--54378
21
2.9
21
78
15
60
63
1
0
34
1.04
54339--54391
16
3.1
16
78
21
63
69
0
0
30
0.88
54452--54523
36
2.0
36
88
0
108
47
23
6
22
1.75
57616--57720
55
1.9
55
90
0
165
34
19
13
33
1.90
58906--58977
13
5.6
13
78
14
78
34
22
5
37
1.77
60281--60337
30
1.9
30
88
0
87
42
3
22
31
1.71
60548--60579
13
2.5
13
94
0
55
31
0
12
56
1.37
60674--60915
50
4.7
50
86
4
297
26
24
29
19
1.99
60674--60923
100
2.4
103
88
6
364
26
24
29
20
1.99
67861--67918
30
1.9
30
89
0
89
41
3
24
31
1.71
68128--68159
13
2.5
13
94
0
55
31
0
12
56
1.37
68268--68497
49
4.6
49
75
15
179
25
25
27
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68268--68505
97
2.4
101
78
12
240
25
24
27
22
2.00

Tables:   1

The End!