Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold939
Parameters: 2 7 7 80 10 50 1000
Length:  62271

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8805--8862
29
2.0
29
86
0
80
56
5
8
29
1.51
9042--9075
7
4.9
7
92
0
59
55
0
0
44
0.99
9255--9297
20
2.2
19
88
12
61
58
2
0
39
1.11
14626--14656
12
2.6
12
94
0
53
74
0
25
0
0.82
15118--15252
39
3.4
39
75
8
114
24
20
28
27
1.99
15354--15394
18
2.3
18
87
8
57
48
0
21
29
1.50
22389--22660
87
3.1
86
82
3
321
21
20
23
34
1.97
22703--22789
43
2.0
44
82
8
106
19
25
21
33
1.97
22627--23132
132
3.8
131
82
6
623
22
22
23
31
1.99
22977--23416
177
2.5
178
87
2
697
23
22
22
30
1.99
24663--24710
24
2.0
24
83
0
60
2
22
4
70
1.15
24697--24752
26
2.2
25
84
9
69
0
25
0
75
0.81
24676--24752
13
5.8
13
72
14
59
0
23
1
75
0.88
30775--31013
126
1.9
127
94
0
426
38
16
15
29
1.90
31231--31281
21
2.4
21
83
0
57
56
7
9
25
1.58
32622--32680
25
2.4
24
81
10
66
67
5
0
27
1.11
33550--33594
22
2.0
22
91
0
72
64
0
0
35
0.94
34240--34270
6
5.2
6
100
0
62
48
0
35
16
1.46
37014--37044
6
5.2
6
92
0
53
3
16
0
80
0.83
47580--47618
14
2.9
14
84
3
53
56
5
5
33
1.43
47816--47928
21
5.3
21
75
15
90
59
1
5
33
1.30
47814--47928
43
2.7
43
76
11
112
59
1
5
33
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47856--47917
22
2.8
21
79
18
72
62
1
1
33
1.14
47857--47917
10
5.7
10
70
14
50
62
1
1
34
1.15
48211--48280
33
2.1
33
84
10
90
67
0
4
28
1.10
48225--48258
12
2.8
12
81
0
50
70
0
0
29
0.87
49885--49996
45
2.5
45
88
2
154
25
29
22
22
1.99
50232--50436
54
3.8
54
81
5
252
35
17
14
32
1.90
50452--50590
71
2.0
71
89
0
215
30
22
17
29
1.96

Tables:   1

The End!