Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3133
Parameters: 2 7 7 80 10 50 1000
Length:  60781

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3264--3288
12
2.1
12
100
0
50
48
8
0
44
1.32
5807--5845
21
1.9
20
94
5
69
33
10
25
30
1.89
6025--6063
16
2.6
15
84
11
53
56
0
0
43
0.99
6031--6082
16
3.0
18
81
10
56
59
0
0
40
0.97
7804--7837
14
2.6
13
86
13
52
55
0
0
44
0.99
15068--15101
17
2.0
17
94
0
59
47
11
2
38
1.55
19675--19758
20
4.4
19
73
23
70
59
1
5
33
1.29
23183--23213
15
2.1
15
100
0
62
48
19
19
12
1.81
27905--27937
17
2.0
17
88
5
50
0
57
0
42
0.98
27934--27976
18
2.4
18
88
0
59
9
13
6
69
1.35
28599--28630
15
2.0
17
88
11
50
56
9
3
31
1.47
28677--28736
31
1.9
31
96
0
111
48
8
1
41
1.43
28797--28835
17
2.3
17
86
8
53
69
5
2
23
1.21
28899--28929
9
3.4
9
95
0
53
58
0
0
41
0.98
28912--28955
19
2.2
21
88
8
65
63
0
2
34
1.07
29109--29136
13
2.2
13
100
0
56
46
7
0
46
1.30
29570--29614
18
2.6
18
82
3
56
37
2
0
60
1.09
29565--29651
31
2.6
35
80
14
103
35
2
0
62
1.08
29516--29654
8
16.9
8
69
15
70
35
4
0
60
1.17
29544--29654
25
4.6
25
70
22
78
35
3
0
61
1.14
30925--30958
14
2.4
14
90
0
50
14
17
0
67
1.23
32276--32326
16
3.2
16
97
0
93
52
13
11
21
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33245--33278
16
2.1
17
94
5
61
23
11
0
64
1.26
33953--33983
15
2.1
15
100
0
62
67
0
12
19
1.22
39670--39714
23
2.0
22
83
12
56
44
0
2
53
1.13
39691--39912
8
28.2
8
67
25
79
32
3
1
62
1.21
39738--39959
15
14.3
15
69
21
81
29
3
1
65
1.18
39750--39907
26
5.3
30
75
16
116
32
3
1
63
1.18
39782--39884
6
16.5
6
72
16
68
33
1
0
64
1.05
39787--39994
55
4.1
48
73
21
122
29
1
2
65
1.18
39742--39914
80
2.1
84
78
14
191
31
2
1
64
1.15
39738--39994
7
35.9
7
68
23
121
29
2
2
64
1.19
39779--39959
55
3.4
52
77
18
158
29
2
2
66
1.16
39738--39938
19
10.6
18
71
18
97
29
3
0
66
1.15
39738--39962
11
22.0
10
71
18
121
29
3
1
65
1.18
39868--39991
29
4.4
30
74
18
99
25
2
4
66
1.23
39941--40019
40
2.0
40
80
14
92
37
0
6
55
1.25
39994--40068
31
2.4
32
84
10
93
50
1
4
44
1.29
44931--44959
12
2.4
12
100
0
58
34
17
0
48
1.47
45715--45764
25
2.0
25
100
0
100
28
8
0
64
1.22
45715--45757
15
3.2
15
69
30
51
27
6
0
65
1.18
45719--45772
25
2.3
23
84
12
67
35
7
0
57
1.27

Tables:   1

The End!