Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold245
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 54302
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Found at i:134 original size:43 final size:43
Alignment explanation
Indices: 25--3354 Score: 3142
Period size: 42 Copynumber: 79.5 Consensus size: 43
15 TCCTACGGTG
*
25 CTCGGACACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
67 CTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
109 CTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTACGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * *
152 CTCGGGCACCATCGGCACCCTATGCCCCTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
195 CTCGGTCACCATC-GC-ACCTAGGCCCTTGGTCGTTCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
236 CTCGGG-ACCATCGGC-ACCTA-GCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
276 CTCGGGCACCATC-GCACCCTAGGCCCCTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
318 CTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCATGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
360 CT-GGG-ACCAAT-GG--ACCTAGG-CCTTTG-CGTGCGGGAGC
1 CTCGGGCACC-ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
397 CTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-G-GCGGGAGC
1 CTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGC
* * * * * * * *
438 CT-GGACACCATCGGTAACCTAGGACGTCGATGGTGCCGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * *
480 ATC-CGCA-CAT-TG----CT--G--CTTGGACGTGCTGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * * * ** * **
512 GTTGGACGCACAACTAGGCCA-CTAGGACGTCAGTGGTGCAAGAGC
1 CTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * * *
557 CTCGAGCAGCATCGGC-ATCTTGGTGCCTTGGAT-ATGCAGGAGC
1 CTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGC
*
600 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
643 CTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
686 CTCAGGC-CCATCGGCAACCTAGGCACC-TGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGC
* * * *
728 CTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTACGGGAG-
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
769 CTCAGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
812 CTC-GGCACCATCGGCAACCTAGGCCCCTGGTCTTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
854 CTCGGGCACCATCGGCAACCTA-GCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
896 CTCGGGCACCATC-GCAACCTAGGCACC-TGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGC
* * * *
938 CTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTACGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
980 ATC--G---CATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
** *
1018 CTC-GAAACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
1060 CTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * *
1103 CTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGTTCGAGATC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
1145 CTCAGG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
1186 CTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * *
1229 CTCGGGCACCGTCGAC-ACCTAGGCCCTTGGTCATACGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
1271 CTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* ** *
1312 CTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGTAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGC
* * * * * * * *
1354 CT-GGGACACCATCGGTAACCTAGGACGTCGATGGTTCCGGAGC
1 CTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * **
1397 ATC-CGCA-CAT-TG----CT--G--CTTGGACGTCCTTGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * * * * * **
1429 GTTGGACGCACAACTAGGCCACCTAGGACGTTAGTGGTGCAAGAGC
1 CTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * * * *
1475 CTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-ATGCAGAATC
1 CTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGC
*
1518 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
1560 CTCGGGCACCATCGGAAACCTAGG-CCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
1602 CTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
1645 CTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
1688 CTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
1731 CTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTACGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
** * * * *
1774 CTAAGACACCATC-GAAACCTAGGCCCCTGGTCGTACGGGAG-
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
1815 CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
1858 CTCGGG-ACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
1899 CTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * *
1941 CTCGGGCACCATCGGCACCCTATGCCCCTGGTCCTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * *
1984 CACGGTCACCATCGGC-ACCTAGGCCCTTGGTCGTTCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
2026 CTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
2067 CTCGGGCACCATCGGCACCCTAGGCACC-TGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGC
* *
2110 CTCGGGCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
2152 CTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
2193 CTCAGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GGGCGGGAGC
1 CTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGC
* *
2235 CT-GGGACACCATCGGTAACCTAGGCCTTTGGTCGTGCGGGAGC
1 CTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * ** *
2278 CTCGGGCACTATCGGC-ACCTTGGTGCTTGGAT-GTGCGGTAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGC
* * * * * * *
2320 CT-GGGACACCATCGGTAACCTAGGACGTCGATGGTGCCGGAGC
1 CTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * *
2363 ATC-CGCA-CAT-TG----CT--G--CTTGGACGTGCTGGAAC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * * * ** * *
2395 GTTGGACGCACAACTAGGCCACCTAGGACGTCAGTGGTG-GAAGAGC
1 CTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGC
* * * * * * *
2441 CTCGAGCAGCATCAGC-ACCTTGGTGCCTTGGAT-ATGCAGGAGC
1 CTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGC
*
2484 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
2527 CTCGGGCACCATCGGAAATCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
2570 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
2613 CTCGTGCACCATCGGCAACCTAGGCACC-TGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGC
* * * *
2656 CTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTACGGGAG-
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
2697 CTCGGACACCATTGGCAACCTAGGCACC-TGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGC
*
2740 CTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
2782 CTCGGGCACCATCGGCAACCTAGGCCCCTT-GTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGC
* * *
2825 CTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
2868 CTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGTTCGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
2910 CTCGGG-ACCATCAGC-ACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * *
2951 CTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGTGAGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
2994 CTCGGGCACCATCGG-TACCTAGGCCTTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* **
3036 CTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGC
* *
3078 CT-GGGACACCATTGGTAACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
3121 CTCGGGTACCATCGG-TACCTTAGTG--CTTGGAT-GTGCGGGAGC
1 CTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGC
* * *
3163 CTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCCGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
3206 CTC-GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
3248 CTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGC
* * * * **
3291 CTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGC
1 CTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGC
* *
3333 CTCGGACACCATAGGCAACCTA
1 CTCGGGCACCATCGGCAACCTA
3355 TGACGTTGGA
Statistics
Matches: 2766, Mismatches: 366, Indels: 311
0.80 0.11 0.09
Matches are distributed among these distances:
32 33 0.01
34 3 0.00
35 9 0.00
36 9 0.00
37 20 0.01
38 41 0.01
39 13 0.00
40 58 0.02
41 403 0.15
42 1066 0.39
43 1030 0.37
44 47 0.02
45 12 0.00
46 22 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
Found at i:1103 original size:85 final size:86
Alignment explanation
Indices: 595--3354 Score: 2776
Period size: 85 Copynumber: 32.8 Consensus size: 86
585 TGGATATGCA
* *
595 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
660 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * *
681 AGAGCCTCAGGC-CCATCGGCAACCTAGGCACC-TGGTCGTGCGGGAGCCTCAGACACCATCGG-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
743 AACCTAGGCCCCTGGTCGTACG
65 AACCTAGGCCCTTGGTCGTGCG
* * *
765 GGAG-CTCAGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
828 ACCTAGGCCCCTGGTCTTGCG
66 ACCTAGGCCCTTGGTCGTGCG
*
849 GGAGCCTCGGGCACCATCGGCAACCTA-GCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC-GCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
912 ACCTAGGCACC-TGGTCGTGCG
66 ACCTAGGC-CCTTGGTCGTGCG
* * * * *
933 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTACGGGAGCATC--G---CATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
992 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
** *
1013 GGAGCCTC-GAAACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
1077 CCCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * * *
1098 AGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGTTCGAGATCCTCAGG-ACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1160 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * *
1181 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCGTCGAC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
1245 ACCTAGGCCCTTGGTCATACG
66 ACCTAGGCCCTTGGTCGTGCG
* *
1266 AGAGCCTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* **
1328 ACCTTGGTGCTTGGAT-GTGCG
66 ACCTAGGCCCTTGG-TCGTGCG
* * * * * * * * * * * *
1349 GTAGCCT-GGGACACCATCGGTAACCTAGGACGTCGATGGTTCCGGAGCATC-CGCA-CAT-TG-
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * *
1409 ---CT--G--CTTGGACGTCCT
65 AACCTAGGCCCTTGGTCGTGCG
* * * * * * * * * * ** * *
1424 TGAGCGTTGGACGCACAACTAGGCCACCTAGGACGTTAGTGGTGCAAGAGCCTCGAGCAGCATCG
1 GGAGCCTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * * *
1489 GC-ACCTTGGTGCCTTGGAT-ATGCA
63 GCAACCTAGG-CCCTTGG-TCGTGCG
* * * *
1513 GAATCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGAA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1577 ACCTAGG-CCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * *
1597 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1662 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * *
1683 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
1748 ACCTAGGCCCCTGGTCGTACG
66 ACCTAGGCCCTTGGTCGTGCG
** * * * * *
1769 GGAGCCTAAGACACCATC-GAAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
1832 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
*
1853 GGAGCCTCGGG-ACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
1916 ACCTAGGCCCCTGGTCGTGC-
66 ACCTAGGCCCTTGGTCGTGCG
* * * * * * *
1936 GGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCCTGCGAGAGCCACGGTCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
2000 ACCTAGGCCCTTGGTCGTTCG
66 ACCTAGGCCCTTGGTCGTGCG
*
2021 AGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
2084 CCCTAGGCACC-TGGTCGTGCG
66 ACCTAGGC-CCTTGGTCGTGCG
* * *
2105 AGAGCCTCGGGCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
2167 ACCTAGGCCTTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* *
2188 GGAGCCTCAGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GGGCGGGAGCCT-GGGACACCATC
1 GGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATC
* *
2248 GGTAACCTAGGCCTTTGGTCGTGCG
62 GGCAACCTAGGCCCTTGGTCGTGCG
* * ** *
2273 GGAGCCTCGGGCACTATCGGC-ACCTTGGTGCTTGGAT-GTGCGGTAGCCT-GGGACACCATCGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGG
* * * * * * *
2335 TAACCTAGGACGTCGATGGTGCC
64 CAACCTAGGCCCTTGGTCGTGCG
* * * * * * * * * *
2358 GGAGCATC-CGCA-CAT-TG----CT--G--CTTGGACGTGCTGGAACGTTGGACGCACAACTAG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG--GCACCA-TCG
* * * ** *
2412 GCCACCTAGGACGTCAGTGGTG-G
63 GCAACCTAGGCCCTTGGTCGTGCG
* * * * * * * * *
2435 AAGAGCCTCGAGCAGCATCAGC-ACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACACCATCG
1 -GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
2498 GCAACCTAGGCCCTTGGTCGTGCG
63 GCAACCTAGGCCCTTGGTCGTGCG
* *
2522 GGAGCCTCGGGCACCATCGGAAATCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
2587 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * *
2608 AGAGCCTCGTGCACCATCGGCAACCTAGGCACC-TGGTCGTGCGGGAGCCTCAGACACCATCGG-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
2671 AACCTAGGCCCCTGGTCGTACG
65 AACCTAGGCCCTTGGTCGTGCG
* *
2693 GGAG-CTCGGACACCATTGGCAACCTAGGCACC-TGGTCGTGCGGGAGCCTCGGG-ACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
2755 AACCTAGGCCCCTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCG
2777 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTT-GTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
2841 ACCCTAGGCCCCTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCG
* * * * *
2863 AGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGTTCGAGAGCCTCGGG-ACCATCAGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
2925 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * *
2946 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGTGAGAGCCTCGGGCACCATCGG-T
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
3010 ACCTAGGCCTTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* ** *
3031 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATTGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGG
*
3093 TAACCTAGGCCCTTGGTCGTGCG
64 CAACCTAGGCCCTTGGTCGTGCG
* * *
3116 GGAGCCTCGGGTACCATCGG-TACCTTAGTG--CTTGGAT-GTGCGGGAGCCTCGGACACCATCG
1 GGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
* *
3177 GTAACCTAGGCCCTTGGTCGTGCC
63 GCAACCTAGGCCCTTGGTCGTGCG
*
3201 GGAGCCTC-GGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
3264 ACCTTGGTGCCTTGGAT-GTGCG
66 ACCTAGG-CCCTTGG-TCGTGCG
* * * * ** * *
3286 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
3349 AACCTA
65 AACCTA
3355 TGACGTTGGA
Statistics
Matches: 2280, Mismatches: 286, Indels: 216
0.82 0.10 0.08
Matches are distributed among these distances:
75 25 0.01
76 4 0.00
77 10 0.00
78 53 0.02
79 26 0.01
80 63 0.03
81 2 0.00
82 11 0.00
83 307 0.13
84 593 0.26
85 773 0.34
86 369 0.16
87 17 0.01
89 27 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (86 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCTTGGTCGTGCG
Found at i:3409 original size:43 final size:43
Alignment explanation
Indices: 2437--3415 Score: 316
Period size: 43 Copynumber: 23.0 Consensus size: 43
2427 AGTGGTGGAA
* * * *
2437 GAGCCTCGAGCAGCATCA-GCACCTTGGTGCCTTGGATATGCAG
1 GAGCCTCGAGCACCAT-AGGCACCCTGGTGCCTTGGATGTGCGG
* * *
2480 GAGCCTCG-GACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * ** *
2523 GAGCCTCGGGCACCATCGGAAATCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * * *
2566 GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGA
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * * *
2609 GAGCCTCGTGCACCATCGGCAACCTAG-GCACCTGG-TCGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGC-CTTGGAT-GTGCGG
* * * * *
2652 GAGCCTC-AGACACCATCGG-AACCTAGG-CCCCTGG-TCGTACGG
1 GAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * *
2694 GAG-CTCG-GACACCATTGGCAACCTAG-GCACCTGG-TCGTGCGG
1 GAGCCTCGAG-CACCATAGGCACCCTGGTGC-CTTGGAT-GTGCGG
* * * * *
2736 GAGCCTCG-GGACCATCGGCAACCTAGG-CCCCTGG-TCGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * **
2778 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTT-G-TCGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * * *
2821 GAGCCTCGGGCACCATCGGCACCCTAGG-CCCCTGG-TCGTGCGA
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * * *
2864 GAGCCTCGGGCACCATCGGCA-CCTAG-GCCTTTGG-TCGTTCGA
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCC-TTGGAT-GTGCGG
* *
2906 GAGCCTCG-GGACCATCA-GCA-CCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCAT-AGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * * * *
2947 GAGCCTCGGGCACCATCGGCACCCTAGG-CCCCTGG-TCGTGTGA
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * *
2990 GAGCCTCGGGCACCATCGGTA-CCTAG-GCCTTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCC-TTGGAT-GTGCGG
* * *
3032 GAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCCTTGGATGTGCGG
* * * * *
3074 GAGCCT-GGGACACCATTGGTAACCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * * * *
3117 GAGCCTCGGGTACCATCGGTACCTTAGTG-CTTGGATGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCCTTGGATGTGCGG
* * * * *
3159 GAGCCTCG-GACACCATCGGTAACCTAGG-CCCTTGG-TCGTGCCG
1 GAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * * *
3202 GAGCCTCG-GCACCATCGGTAACCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCT-GGTGCCTTGGAT-GTGCGG
* * *
3244 GAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCCTTGGATGTGCGG
* * *
3287 GAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGATGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCCTTGGATGTGCGG
* * *
3329 GAGCCTCG-GACACCATAGGCAACCT-ATGACGTTGGATGTGCGG
1 GAGCCTCGAG-CACCATAGGCACCCTGGTG-CCTTGGATGTGCGG
* * ** *
3372 GTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCACCATAGGCACCCTGGTGCCTTGGATGTGCGG
3415 G
1 G
3416 CTAAAGAAAA
Statistics
Matches: 794, Mismatches: 97, Indels: 90
0.81 0.10 0.09
Matches are distributed among these distances:
41 58 0.07
42 283 0.36
43 438 0.55
44 15 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
GAGCCTCGAGCACCATAGGCACCCTGGTGCCTTGGATGTGCGG
Found at i:15907 original size:24 final size:24
Alignment explanation
Indices: 15853--15909 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
15843 TTCTGACGAT
* *
15853 CCATTCCGACGGTGGTCCGGCGAG
1 CCATCCCGACGGTGCTCCGGCGAG
** * *
15877 CTTTCCCGGCGGTGCTCCGGTGAG
1 CCATCCCGACGGTGCTCCGGCGAG
15901 CCATCCCGA
1 CCATCCCGA
15910 AATATAGAAA
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.11, C:0.37, G:0.33, T:0.19
Consensus pattern (24 bp):
CCATCCCGACGGTGCTCCGGCGAG
Found at i:16231 original size:43 final size:43
Alignment explanation
Indices: 16184--16979 Score: 830
Period size: 43 Copynumber: 18.7 Consensus size: 43
16174 TGGATATGCA
* * * * *
16184 GGAGCCTTGGACACCATCGACAAGCTAAGCCATTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
16227 GGAGCCTCGGCCACCATCGGAAACCTAGTCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
16270 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
16313 AGAGCCTCAGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
16356 AGAGCCTCGGAAACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
16399 GGAGCCTCAGACACCTTCGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
16441 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
16483 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCTTTCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
16526 GGAGCCTCGGGCACCATCGGTACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** *
16569 GGAGTTTC-GAGCACCATCGGCACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
16612 AGAGCCTCGG-GACCATCGGC-ACTTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
16653 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * *
16695 AGAGCCTGGGACACCATCGGTAACCTAGGCCCCTAGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * ** *
16738 GGAGCCTCGGGCACCATCAGC-ACCTTGGTGCTTGGAT-GTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
16780 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
16823 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * *
16866 GGAGCCTCGGGCACCATCGG-GACCTTGGTGCCTCAGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCT-TGGTCGTGCG
* ** * ** *
16909 GGAGCCTC-GAGCAGCATTAGC-ACCTTGGTGCTTAGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTT-GGTCGTGCG
*
16951 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
16980 ACGTTGGATG
Statistics
Matches: 641, Mismatches: 92, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
41 41 0.06
42 171 0.27
43 424 0.66
44 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:16489 original size:213 final size:213
Alignment explanation
Indices: 16184--16885 Score: 878
Period size: 213 Copynumber: 3.3 Consensus size: 213
16174 TGGATATGCA
* * * * * * *
16184 GGAGCCTTGGACACCATCGACAAGCTAAGCCATTGGTCGTGCGGGAGCCTCGGCCACCATCGGAA
1 GGAGCCTCGG-CACCATCG-GAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
16249 ACCTAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* * *
16314 GAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGAAACCATCGGCAA
129 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
*
16379 CCTAGGCCCCTGGTCGTGCG
194 CCTAGGCCCTTGGTCGTGCG
* * * *
16399 GGAGCCTCAGACACCTTCGGAACCTAGGCCCCTGGTCGTGCGGGAG-CTCGGACACCATCGGCAA
1 GGAGCCTC-GGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * * *
16463 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCTTTCGGG
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
* * ** *
16528 AGCCTCGGGCACCATCGGTACCCTAGGCCCCTGGTCGTGCGGGAGTTTC-GAGCACCATCGGCAC
130 AGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAA
16592 CCTAGGCCCTTGGTCGTGCG
194 CCTAGGCCCTTGGTCGTGCG
* * * *
16612 AGAGCCTCGGGACCATCGGCACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
1 GGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * * *
16676 CTTGGTGCTTGGAT-GTGCGAGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTAGTCGTGCGG
66 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* * * ** *
16739 GAGCCTCGGGCACCATCAG-CACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCATCGGCA
129 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
*
16802 ACCTAGGCCCTTGGTCGTGCC
193 ACCTAGGCCCTTGGTCGTGCG
16823 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 GGAGCCTC-GGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
16886 GACCTTGGTG
Statistics
Matches: 418, Mismatches: 60, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
211 59 0.14
212 113 0.27
213 209 0.50
214 22 0.05
215 14 0.03
216 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (213 bp):
GGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
TAGGCCCTTGGTCGTGCG
Found at i:21683 original size:35 final size:35
Alignment explanation
Indices: 21644--21715 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
21634 CATCTCCGGA
*
21644 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
21679 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
21714 GC
1 GC
21716 GATCCCAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:25068 original size:43 final size:43
Alignment explanation
Indices: 24997--28841 Score: 3617
Period size: 43 Copynumber: 91.3 Consensus size: 43
24987 GGAACCATCG
*
24997 GCGGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25039 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * *
25082 GCGGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCAT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25125 GCGAGAGCCTCGGTCACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25167 TCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
25208 GCGGGAGCCTCGGGAACCATCGGCACCCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25251 GCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25293 GCGGGAGCCTCGGGCACCATC-GCCACCTTAGTG--CTTGGAT-GG
1 GCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGT
* * * * * *
25335 GCGGGAGCCT-GGGACACCATCGGTAACCTAGGACGTCGATGGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * *
25378 GCCGGAGCATC-CGCA-CAT-TG----CT--G--CTTGGACGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * * * * * ** *
25410 GCTGGAGCGTTGGACGCACAACTAGGCCACCTAGGACGTCAGTGGT
1 GCGGGAGCCTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGT
** * * * * *
25456 GCAAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-AT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGT
* *
25499 GCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
**
25542 GCGGGAGCCTCGGGCACCATCGAAAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
25585 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
25628 GCGAGAGCCTCGGGCACCATCGGCAACCTAGGCACC-TGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGT
* * * * *
25671 GAGGGAGCCTCAGACACTATCGG-AACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
25713 ACGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
25755 GCGGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25797 GCGGGAGCCTCCGGCACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25840 GCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * * *
25883 CCGAGAGCCTCGGGCACCATCGAC-ACCTACGCCTTTGGTTGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25925 TCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
25966 GCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
26009 GCGAGAGCCTCGGGTACCATCGAC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
26051 GCGAGAGCCTCGGG-ACCATCGGC-ATCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* **
26092 GCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
* * * * * *
26134 GCGGTAGCCT-GGGACACCATCGGTAACCTAGGACGTTGATGGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * *
26177 GCCGGAGCATC-CGCA-CAT-TG----CT--G--CTTGGACGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* ** * * * * * * * ** *
26209 CCTTGAGCGTTGGACGCACAACTAGGCCACCTAGGACGTCAGTGGT
1 GCGGGAGCCTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGT
** * * * * *
26255 GCAAGAGCCTCGCGCAGCATCGGC-ACCTTGGTGCCTTGGAT-AT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGT
*
26298 GCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
26341 GCGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
26384 GCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
26427 GCGAGAGCCTCGGGCACCATCGGCAGCCTAGGCCCCTGGTC-T
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* **** *
26469 ACGGGAGCCTAATACACCATCGG-AACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
26511 ACGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
26553 GCGGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
26595 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
26638 GCGGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * *
26681 GTGAGAGCCCCGGTCACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
26723 TCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
26764 GCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
26807 GCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
26849 GCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
26890 GCGGGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GG
1 GCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGT
* *
26932 GCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* **
26975 GCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
** * * * * * * *
27017 GCGATAGCCT-GGGACACCATCGGTAACCTAAGACGTCGATGGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * *
27060 GCTGGAGCATC-CGCA-CAT-TG----CT--G--CTTGGACGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * * * * * ** *
27092 GCTGGAGCGTTGGACGCACAACTAGGCCACCTAGGACGTCAGTGGT
1 GCGGGAGCCTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGT
** * * * * *
27138 GCAAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-AT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGT
* *
27181 GCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
27224 GCGGAAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
27267 GCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
27310 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * *
27353 GCAGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * *
27396 GTGAGAGCCCCGGTCACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
27438 TCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
27479 GCGGGAGCCTCGAGCACCATCGGCACCCTAGGACCC-TGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGT
*
27522 GCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
27564 GCGAGAGCCTCGGG-ACCATCAGC-ACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
27605 GCGGGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GG
1 GCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGT
* *
27647 GCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* **
27690 GCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
* * * * * * *
27732 GCGGTAGCCT-GGGACACCATCGGTAACCTAGGACGTCGATGGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * *
27775 GCCGGAGCATC-CGCA-CAT-TG----CT--G--CTTGGACGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * * * * * ** *
27807 GCTGGAGCGTTGGACGCACAACTAGGCCACCTAGGACGTCAGTGGT
1 GCGGGAGCCTCGG--GCACCA-TCGGCAACCTAGGCCCTTGGTCGT
** * * * * *
27853 GCAAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-AT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGT
* *
27896 GCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
27939 GCGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
27982 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
28025 GCGAGAGCCTCGGGCACCATCGGCAACCTAGGCACC-TGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGT
* * * * *
28068 GCGGGAGCCTCAGACACTAGCGG-AACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* ** ** *
28110 ACGGGAG-CTCGGATACCATTTGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
28152 GCGGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
*
28194 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
28237 GCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
28280 GCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
28322 TCGAGAGCCTCGGG-ACCATCAGC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
28363 GCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
28406 GTGAGAGCCTCGGGCACCATCGAC-ACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
28448 GCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* **
28489 GCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
*
28531 GCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGT
* * **
28574 GCGGGAGCCTCGGGCTCCATCGGC-ACCTTGGTGCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
* **
28616 GCGGGAGCCTCGGACACCATCGATAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
28659 GCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
28702 GCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGT
* * * * **
28745 GCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
* * * * *
28787 GCAGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGT
*
28830 GCGGGTGCCTCG
1 GCGGGAGCCTCG
28842 AGCAGCAGGG
Statistics
Matches: 3180, Mismatches: 466, Indels: 313
0.80 0.12 0.08
Matches are distributed among these distances:
32 48 0.02
34 4 0.00
35 12 0.00
36 12 0.00
37 4 0.00
38 4 0.00
40 4 0.00
41 434 0.14
42 967 0.30
43 1576 0.50
44 68 0.02
46 47 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
Found at i:25228 original size:126 final size:127
Alignment explanation
Indices: 25001--28771 Score: 3470
Period size: 126 Copynumber: 29.8 Consensus size: 127
24991 CCATCGGCGG
* *
25001 GAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CA
* * *
25065 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCATGCGA
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * *
25129 GAGCCTCGGTCACCATCGGCACCTAGGCCCTTGGTCGTTCGAGAGCCTCGGG-ACCATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
*
25193 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* *
25255 GAGCCTCGGGCACCATCGGCACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGCCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * *
25320 TTAGTG--CTTGGAT-GGGCGGGAGCCT-GGGACACCATCGGTAACCTAGG--AC--GTCGAT--
66 -TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGCACCCTAGGCCCCTGGTCG-TGC
25375 G-
126 GA
* * * * * * * * * * * *
25376 GTG-C-C-GG-AGCATCCGCACAT-TGCTGCTTGGACGTGCTGGAGCGTTGGACGCACAACTAGG
1 GAGCCTCGGGCACCATCGGCACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGG--GCACCA-TCGG
* * ** * ** * * * * * *
25436 CCACCTAGGACGTCAGTGGTGCAAGAGCCTCGAGCAGCATCGGCA-CCTTGGTGCCTTGGAT-AT
62 -CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGG-CCCCTGG-TCGT
25499 GC-A
124 GCGA
* **
25502 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAAA
1 -GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GC
* * *
25567 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGA
63 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * * *
25632 GAGCCTCGGGCACCATCGGCAACCTAGGCACC-TGGTCGTGAGGGAGCCTCAGACACTATCGGAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
25696 CCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* *
25759 GAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCCGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* *
25823 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTCCGA
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * * * *
25887 GAGCCTCGGGCACCATCGACACCTACGCCTTTGGTTGTTCGAGAGCCTCGGG-ACCATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
25951 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * *
26013 GAGCCTCGGGTACCATCGACACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCATC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * ** *
26077 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT-GTGCG-
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGG-TCGTGCGA
* * * * * * * * *
26137 GTAGCCT-GGGACACCATCGGTAACCTAGGACGTTGATGGTGCCGGAGCATC-CGCA-CAT-TG-
1 G-AGCCTCGGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * ** * * * * * * * *
26197 --CT--G--CTTGGACGTCCTTGAGCGTTGGACGCACAACTAGGC-CACCTAGG-ACGTCAGTGG
63 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG--GCACCA-TCGGCAC-CCTAGGCCCCT-GGTCG
*
26254 TGCAA
123 TGCGA
* * * * * *
26259 GAGCCTCGCGCAGCATCGGCACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-
* * *
26323 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGC-A
63 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
*
26387 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 -GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * **** * * *
26452 GCCTAGGCCCCTGGTC-TACGGGAGCCTAATACACCATCGG-AACCTAGGCCCCTGGTCGTACGG
64 -CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* *
26515 GAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGCAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
* * * *
26578 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * * * *
26642 GAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGTGTGAGAGCCCCGGTCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * *
26707 CTAGGCCCTTGGTCGTTCGAGAGCCTCGGG-ACCATCGGCA-CCTAGGCCCTTGGTCGTGCGG
65 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* *
26768 GAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** *
26833 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCA-CCTAGGCCTTTGGTCGTGCGG
65 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
*
26894 GAGCCTCGGGCACCATCGGCACCTTAGTG--CTTGGAT-GGGCGGGAGCCT-GGGACACCATCGG
1 GAGCCTCGGGCACCATCGGCACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGG
* * * ** *
26955 TAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT-GTG
62 -CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGG-TCGTG
27018 CGA
125 CGA
* * * * * * * * * * * *
27021 TAGCCT-GGGACACCATCGGTAACCTAAGACGTCGATGGTGCTGGAGCATC-CGCA-CAT-TG--
1 GAGCCTCGGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * * * * * * *
27080 -CT--G--CTTGGACGTGCTGGAGCGTTGGACGCACAACTAGGC-CACCTAGG-ACGTCAGTGGT
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGG--GCACCA-TCGGCAC-CCTAGGCCCCT-GGTCGT
*
27138 GCAA
124 GCGA
* * * * * * *
27142 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-
* * * * *
27206 ACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCGG
63 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * *
27271 GAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CA
* * * *
27336 CCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGTGTGA
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * *
27400 GAGCCCCGGTCACCATCGGCACCTAGGCCCTTGGTCGTTCGAGAGCCTCGGG-ACCATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* *
27464 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCCTAGGACCCTGGTCGTGCGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* *
27526 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCAGCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * *
27590 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTG--CTTGGAT-GGGCGG
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAG-GCCCCTGG-TCGTGCGA
* *
27651 GAGCCT-GGGACACCATCGGTAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* ** * * * *
27715 CCTTGGTGCTTGGAT-GTGCGGTAGCCT-GGGACACCATCGGTAACCTAGG--AC--GTCGAT--
64 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGCACCCTAGGCCCCTGGTCG-TGC
27772 G-
126 GA
* * * * * * * * * * * *
27773 GTG-C-C-GG-AGCATCCGCACAT-TGCTGCTTGGACGTGCTGGAGCGTTGGACGCACAACTAGG
1 GAGCCTCGGGCACCATCGGCACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGG--GCACCA-TCGG
* * ** * ** * * * * * *
27833 CCACCTAGGACGTCAGTGGTGCAAGAGCCTCGAGCAGCATCGGCA-CCTTGGTGCCTTGGAT-AT
62 -CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGG-CCCCTGG-TCGT
27896 GC-A
124 GCGA
* *
27899 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
1 -GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-C
* *
27964 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
63 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * * *
28029 GAGCCTCGGGCACCATCGGCAACCTAGGCACC-TGGTCGTGCGGGAGCCTCAGACACTAGCGGAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * ** ** * *
28093 CCTAGGCCCCTGGTCGTACGGGAG-CTCGGATACCATTTGCAACCTAGGCCCCTGGTCGTGCGG
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
*
28156 GAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
*
28220 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
64 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* * * *
28284 GAGCCTCGGGCACCATCGGCACCTAGGCCTTTGGTCGTTCGAGAGCCTCGGG-ACCATCAGCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* *
28348 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGTGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
* *
28410 GAGCCTCGGGCACCATCGACACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * ** * *
28474 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT-GTGCGG
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGG-TCGTGCGA
* *
28535 GAGCCT-GGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCTCCATCGGCA
1 GAGCCTCGGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* ** * ** * *
28599 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGATAACCTAGGCCCTTGGTCGTGCCG
64 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTG-CG
28663 -
127 A
*
28663 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * * *
28728 CTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACC
65 CTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACC
28772 TTGGTGCTTG
Statistics
Matches: 3015, Mismatches: 457, Indels: 341
0.79 0.12 0.09
Matches are distributed among these distances:
116 4 0.00
117 79 0.03
118 8 0.00
119 24 0.01
120 48 0.02
121 132 0.04
122 19 0.01
123 12 0.00
124 21 0.01
125 137 0.05
126 1043 0.35
127 403 0.13
128 457 0.15
129 479 0.16
130 56 0.02
131 14 0.00
132 75 0.02
133 4 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (127 bp):
GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
Found at i:26447 original size:715 final size:707
Alignment explanation
Indices: 25001--28726 Score: 3529
Period size: 715 Copynumber: 5.2 Consensus size: 707
24991 CCATCGGCGG
* *
25001 GAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
* * * *
25064 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCATGCGA
64 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* * * *
25129 GAGCCTCGGTCACCATCGGC-ACCTAGGCCCTTGGTCGTTCGAGAGCCTCGGG-ACCATCGGCAC
129 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAC
* *
25192 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGA
194 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGA
* * *
25257 GCCTCGGGCACCATCGGCACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGCCACCTT
259 GCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACC-T
* * * * * * *
25322 AGTG--CTTGGAT-GGGCGGGAGCCT-GGGACACCATCGGTAACCTAGGACGTCGATGGTGCCGG
322 AG-GCCCTTGG-TCGTGCGGGAGCCTCGGG--ACCATCGG-CACCTAGGCCCT-GGTCGTGCGGG
* * * * * * * *
25383 AGCATC-CGCA-CAT-TG---CT--G--CTTGGACGTGCTG-GAGCGTTGGACGCACAACTAGGC
381 AGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGG--GCACCA-TCGG-
* ** ** * **
25437 CACCTAGGACGTCAGTGGTGCAAGAGCCTCGAGCAGCATCGGCACCTT-G-GTGCCTTG-GATAT
441 CACCTAGGCCGTTGGTGGTGCCGGAGCATCG-GCA-CATCGGCACCTTGGAGTG-CTTGAG-CGT
* *
25499 GCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
502 -C-GGA----CGCACAAC-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
** * *
25564 AAAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCG
560 -GCACCTTGGTGCCTTGGAT-GTGC-GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCG
* * * * *
25627 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCACCTGGTCGTG-AGGGAGCCTCAGACACTAT
622 TGCGGGAGCCTCGGGCACCATCGG--ACCT-GG--CTTGGTCGTGCA-GGAGCCTCGGGCACAAT
* * *
25691 CGG-AACCTAGGCCCCTGGTCGTACGG
681 CGGCAACCTAGGCCCTTGGTCGTGCGA
* *
25717 GAG-CTCGGACACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGG-GACCATCGGCA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
*
25779 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
64 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* *
25844 GAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTCCGAGAGCCTCGGGCACCATCGACAC
129 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAC
* ** * * * * *
25909 CTACGCCTTTGGTTGTTCGAGAGCCTCGGG-ACCATCGGCA-CCTAGGCCCTTGGTCGTGCGGGA
194 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGA
* *
25972 GCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGTACCATCGACACCT
259 GCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCT
* * *
26037 AGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCATCTAGGCCTTTGGTCGTGCGGGAGCCT
322 AGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATCGGCACCTAGGCC-CTGGTCGTGCGGGAGCCT
* ** *
26102 CGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCG-GTAGCCT-GGGACACCATCGGTAACCTA
386 CGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGGG-CACCATCGG-CACCTA
* * * * ** * *
26164 GGACGTTGATGGTGCCGGAGCATCCGCACAT-TGCTGCTTGGACGTCCTTGAGCGTTGGACGCAC
447 GGCCGTTGGTGGTGCCGGAGCATCGGCACATCGGCACCTTGGA-GTGCTTGAGCGTCGGACGCAC
* * * * ** * ** * *
26228 AACTAGGCCACCTAGGACGTCAGTGGTGCAAGAGCCTCGCGCAGCATCGGCACCTTGGTGCCTTG
511 AACTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTG
* *
26293 GATATGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
576 GATGTGC-GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
*
26358 CATCGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
640 CATCGG--ACCT-GG--CTTGGTCGTGCAGGAGCCTCGGGCACAATCGGCAACCTAGGCCCTTGG
26423 TCGTGCGA
700 TCGTGCGA
* * ***
26431 GAGCCTCGGGCACCATCGGCAGCCTAGGCCCCTGG-TCTACGGGAGCCTAATACACCATCGG-AA
1 GAGCCTCGGGCACCATCGGCA-CCTAGGCCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* *
26494 CCTAGGCCCCTGGTCGTACGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
65 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
*
26558 AGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA-A
130 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATC-G-ACA
* *
26621 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGTGTGAG
193 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAG
* * *
26686 AGCCCCGGTCACCATCGGCACCTAGGCCCTTGGTCGTTCGAGAGCCTCGGGACCATCGGCACCTA
258 AGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCACCTA
*
26751 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCC
323 GGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCATCGGCA-CCTAGG-CCCTGGTCGTGCGGGAGCC
26816 TCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGC
385 TCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGC
* * * * *
26880 CTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTT--AGTGCTTGGATG-GGCGGGAGCCT
450 CGTTGGTGGTGCCGGAGCATC-GGCA-CATCGGCACCTTGGAGTGCTT-GA-GCGTC-GGA--C-
* * * *
26942 GGGACACCATCGGTAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT
507 -GCACAAC-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT
* * * * * * * * *
27007 G-CTTGGATGTGCGATAGCCT-GGGACACCATCGGTAACCTAAGACGTCGATGGTGCTGGAGCAT
570 GCCTTGGATGTGCG-GAGCCTCGGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCT
* * * * * * * * *
27070 C-CGCA-CAT-TG--CT-GCTTGGACGTGCTGGAGCGTTGGACGCACAACTAGGCCACCTAGGAC
633 CGGGCACCATCGGACCTGGCTTGGTCGTGCAGGAGCCTCGG--GCACAA-TCGGCAACCTAGGCC
* ** * *
27129 GTCAGTGGTGCAA
695 CTTGGTCGTGCGA
* * * * * * *
27142 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGACACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * *
27207 CCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCGGG
65 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
* *
27272 AGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA-A
130 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATC-G-ACA
* * *
27336 CCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCCTATGCCCCTGGTCGTGTGAG
193 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAG
* * *
27401 AGCCCCGGTCACCATCGGCACCTAGGCCCTTGGTCGTTCGAGAGCCTCGGGACCATCGGCACCTA
258 AGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCACCTA
* *
27466 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCCTAGGACCCTGGTCGTGCGAGAGCC
323 GGCCCTTGGTCGTGCGGGAGCCTCG-GGACCATCGGCA-CCTAGG-CCCTGGTCGTGCGGGAGCC
*
27531 TCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCAGCACCTAGGC
385 TCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGC
* * * * *
27595 CTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTT--AGTGCTTGGATG-GGCGGGAGCCT
450 CGTTGGTGGTGCCGGAGCATC-GGCA-CATCGGCACCTTGGAGTGCTT-GA-GCGTC-GGA--C-
* * * *
27657 GGGACACCATCGGTAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT
507 -GCACAAC-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT
* * * * * * *
27722 G-CTTGGATGTGCGGTAGCCT-GGGACACCATCGGTAACCTAGGACGTCGATGGTGCCGGAGCAT
570 GCCTTGGATGTGCGG-AGCCTCGGG-CACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCT
* * * * * * * * *
27785 C-CGCA-CAT-TG--CT-GCTTGGACGTGCTGGAGCGTTGGACGCACAACTAGGCCACCTAGGAC
633 CGGGCACCATCGGACCTGGCTTGGTCGTGCAGGAGCCTCGG--GCACAA-TCGGCAACCTAGGCC
* ** * *
27844 GTCAGTGGTGCAA
695 CTTGGTCGTGCGA
* * * * * * *
27857 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGACACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCACCTAGG-CCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* * *
27922 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGCGGG
65 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
* *
27987 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAC
130 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGAC-AC
* * * * * * * *
28052 CTAGGCACCTGGTCGTGCGGGAGCCTCAGACACTAGCGG-AACCTAGGCCCCTGGTCGTACGGGA
194 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGA
** ** * *
28116 G-CTCGGATACCATTTGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCT
259 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGC-ACCT
*
28180 AGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGC
322 AGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCATCGGC-ACCTAGG-CCCTGGTCGTGCGGGAGC
*
28245 CTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG
384 CTCGGGCACCATCGGCA-CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG
* * * * * * * **
28310 GCCTTTGGTCGT-TCGAGAGCCTCGGGACCATCAGCACC-TAG-GCCCTTG-GTCGTGCGGGAGC
448 GCCGTTGGTGGTGCCG-GAGCATCGGCA-CATCGGCACCTTGGAGTGCTTGAG-CGT-C-GGA--
* * * * * * * *
28371 CTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGTGAGAGCCTCGGGCACCATCGACACCTAG
506 --CGCACAAC-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTG
* * *
28436 G-CCCTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGG-CACCTAGGCCTTTGGTCGTGCGGGAGC
568 GTGCCTTGGAT-GTGCG-GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
28497 CTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATCGGTAACCT
631 CTCGGGCACCATCGG-ACC-T-G-GCTTGG-TCGTGCAGGAGCCTCGGG-CACAATCGGCAACCT
*
28560 AGGCCCTTGGTCGTGCGG
690 AGGCCCTTGGTCGTGCGA
* * ** * **
28578 GAGCCTCGGGCTCCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGATAAC
1 GAGCCTCGGGCACCATCGGCACCTAGGCCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAAC
* * * *
28643 CTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGA
66 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
28708 GCCTCGGGCACCATCGGCA
131 GCCTCGGGCACCATCGGCA
28727 CCTTGGTGCC
Statistics
Matches: 2628, Mismatches: 284, Indels: 192
0.85 0.09 0.06
Matches are distributed among these distances:
708 18 0.01
710 11 0.00
711 44 0.02
712 74 0.03
713 316 0.12
714 282 0.11
715 1163 0.44
716 280 0.11
717 81 0.03
718 16 0.01
719 55 0.02
720 170 0.06
721 74 0.03
722 9 0.00
723 6 0.00
724 29 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (707 bp):
GAGCCTCGGGCACCATCGGCACCTAGGCCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAAC
CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
GCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCT
AGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGC
CTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCACCTAGGC
CCTTGGTCGTGCGGGAGCCTCGGGACCATCGGCACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGC
ACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCGTTGG
TGGTGCCGGAGCATCGGCACATCGGCACCTTGGAGTGCTTGAGCGTCGGACGCACAACTCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGA
GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGACCTG
GCTTGGTCGTGCAGGAGCCTCGGGCACAATCGGCAACCTAGGCCCTTGGTCGTGCGA
Found at i:28826 original size:85 final size:85
Alignment explanation
Indices: 27899--28841 Score: 1138
Period size: 85 Copynumber: 11.1 Consensus size: 85
27889 TGGATATGCA
* * *
27899 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
27964 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* *
27985 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
28050 ACCTAGGCACC-TGGTCGTGCG
65 ACCTAGGC-CCTTGGTCGTGCG
* * * * * * * * **
28071 GGAGCCTCAGACACTAGCGGAACCTAGGCCCCTGGTCGTACGGGAG-CTCGGATACCATTTGCAA
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
*
28135 CCTAGGCCCCTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* *
28155 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
28219 ACCTAGGCCCCTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * *
28240 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* *
28304 ACCTAGGCCTTTGGTCGTTCG
65 ACCTAGGCCCTTGGTCGTGCG
* * *
28325 AGAGCCTCGGG-ACCATCAGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAC
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* *
28389 CCTAGGCCCCTGGTCGTGTG
66 CCTAGGCCCTTGGTCGTGCG
* * * *
28409 AGAGCCTCGGGCACCATCGACACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCGGC-A
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
*
28472 CCTAGGCCTTTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* ** * *
28492 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTGGGACACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
28556 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * ** **
28577 GGAGCCTCGGGCTCCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGATA
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
*
28641 ACCTAGGCCCTTGGTCGTGCC
65 ACCTAGGCCCTTGGTCGTGCG
* *
28662 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* *
28726 ACCTTGGTGCCTTGGAT-GTGCG
65 ACCTAGG-CCCTTGG-TCGTGCG
* * * * ** * *
28748 GGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCAGGAGCCTCGGACACCATAGGCA
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
* *
28812 ACCTAGGACGTTGGAT-GTGCG
65 ACCTAGGCCCTTGG-TCGTGCG
*
28833 GGTGCCTCG
1 GGAGCCTCG
28842 AGCAGCAGGG
Statistics
Matches: 754, Mismatches: 86, Indels: 35
0.86 0.10 0.04
Matches are distributed among these distances:
83 106 0.14
84 118 0.16
85 314 0.42
86 213 0.28
87 3 0.00
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (85 bp):
GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
CCTAGGCCCTTGGTCGTGCG
Found at i:35078 original size:35 final size:35
Alignment explanation
Indices: 35039--35110 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
35029 CATCTCCGGA
*
35039 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
35074 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
35109 GC
1 GC
35111 GATCCCAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:35501 original size:48 final size:50
Alignment explanation
Indices: 35422--35517 Score: 135
Period size: 48 Copynumber: 2.0 Consensus size: 50
35412 GTTCCATTGA
*
35422 ATCCTTAAATTGTTGTGAGACAGGCAGACTTAGGC-ATTTTGAGCGAAGG
1 ATCCTTAAATTGTTGCGAGACAGGCAGACTTAGGCGATTTTGAGCGAAGG
* *
35471 ATCCTT-AATTGTTGCGAGATAGGCTA-ACTTAGGCGTTTTTGAGCGAA
1 ATCCTTAAATTGTTGCGAGACAGGC-AGACTTAGGCGATTTTGAGCGAA
35518 AGAACACTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
48 24 0.57
49 18 0.43
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (50 bp):
ATCCTTAAATTGTTGCGAGACAGGCAGACTTAGGCGATTTTGAGCGAAGG
Found at i:38980 original size:58 final size:59
Alignment explanation
Indices: 38889--39009 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
38879 CCCTCCCCAA
* *
38889 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTAACCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTAACCAACAATGAATGAACCG
* * *
38948 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTAACCAACAATGAATGAACCG
39006 TCCC
1 TCCC
39010 TGTCCCTTTC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTAACCAACAATGAATGAACCG
Found at i:39797 original size:43 final size:43
Alignment explanation
Indices: 39763--40513 Score: 811
Period size: 43 Copynumber: 17.7 Consensus size: 43
39753 TGGATATGCA
*
39763 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
39806 GGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
39849 AGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
39892 GGAGCCTCAGACACCATCAG-AACCTAGG-CCTCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCG
*
39934 GGAG-CTCGGAGACCATCGGCAACCTAGGCTCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGC-CCTTGGTCGTGCG
*
39976 GGAGCCTCAGG--ACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
40018 GGAGCCTCGGGCACCATCGGTATCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
40061 GGAGCCTCGGGCACCATCGGCACCCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
40103 GGAACCTCGGGCACCATCGGCACCCTAGGCCTTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
40146 AGCGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * ** *
40187 GGAACCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * *
40229 AGAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTCCTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * ** *
40272 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
40314 GGAGCCTCGGACACCATCGGCACCCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
40357 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
40400 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCCTCAGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGG-CCCT-TGGTCGTGCG
* * * * **
40443 GGAGCCTC-GAGTAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
40485 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
40514 ACGTTGGATG
Statistics
Matches: 602, Mismatches: 83, Indels: 46
0.82 0.11 0.06
Matches are distributed among these distances:
41 45 0.07
42 234 0.39
43 317 0.53
44 6 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:40094 original size:85 final size:85
Alignment explanation
Indices: 39763--40513 Score: 823
Period size: 85 Copynumber: 8.8 Consensus size: 85
39753 TGGATATGCA
* * *
39763 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
39828 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCC-TGGTCGTGCG
* * * * * *
39849 AGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCAG-A
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
39913 ACCTAGGCCTCTGGTCGTGCG
66 ACCTAGGCC-CTGGTCGTGCG
*
39934 GGAG-CTCGGAG-ACCATCGGCAACCTAGGCTCC-TGGTCGTGCGGGAGCCTCAGG-ACCATCGG
1 GGAGCCTCGG-GCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
39995 CAACCTAGGCCCCTGGTCGTGCG
64 CAACCTAGG-CCCTGGTCGTGCG
* *
40018 GGAGCCTCGGGCACCATCGGTATCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
40083 CCCTAGGCCCTGGTCGTGCG
66 ACCTAGGCCCTGGTCGTGCG
* * * * *
40103 GGAACCTCGGGCACCATCGGCACCCTAGGCCTTTGGTCGTGCGAGCGCCTCGGG-ACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
40166 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCC-TGGTCGTGCG
* * ** * *
40187 GGAACCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTACGAGAGCCT-GGGACACCATCGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGG
* *
40249 TAACCTAGGCCCCTGGTCCTGCG
64 CAACCTAGG-CCCTGGTCGTGCG
* ** * *
40272 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* *
40335 ACCCTAGGCCCTTGGTCGTGCC
65 AACCTAGGCCC-TGGTCGTGCG
* * *
40357 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
40421 ACCTTGGTGCCTCAGAT-GTGCG
66 ACC-TAG-GCC-CTGGTCGTGCG
* * * * * ** * *
40443 GGAGCCTCGAGTAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
40506 AACCTAGG
65 AACCTAGG
40514 ACGTTGGATG
Statistics
Matches: 576, Mismatches: 65, Indels: 50
0.83 0.09 0.07
Matches are distributed among these distances:
82 3 0.01
83 35 0.06
84 122 0.21
85 272 0.47
86 138 0.24
87 5 0.01
88 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCTGGTCGTGCG
Found at i:40566 original size:43 final size:43
Alignment explanation
Indices: 39715--40572 Score: 197
Period size: 43 Copynumber: 20.2 Consensus size: 43
39705 GACGTTAGTG
* * * * *
39715 GTGCGTGAGCCTCGAGCAACATCGGCACCTTGGTGCCTTGGAT
1 GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * * * *
39758 ATGCAGGAGCCTC-AGACACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT
* * * *
39800 CGTGCGGGAGCCTCG-GCCACCATCGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT
* * * * *
39843 CGTGCGAGAGCCTCG-GACACCATCGGCAACCTAG-GCCCCTGG-T
1 -GTGCGGGAGCCTCGAG-CACCATAGGCACCCTGGTGCCTC-GGAT
* *
39886 CGTGCGGGAGCCTC-AGACACCATCA-G-AACCTAG-GCCTCTGG-T
1 -GTGCGGGAGCCTCGAG-CACCAT-AGGCACCCTGGTGCCTC-GGAT
* *
39928 CGTGCGGGAG-CTCGGAG-ACCATCGGCAACCTAGGCT-CCT-GG-T
1 -GTGCGGGAGCCTC-GAGCACCATAGGCACCCT-GG-TGCCTCGGAT
* * * * *
39970 CGTGCGGGAGCCTC-AGGACCATCGGCAACCTAG-GCCCCTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTC-GGAT
* * * * * *
40012 CGTGCGGGAGCCTCGGGCACCATCGGTATCCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCT-GGTGCCTCGGAT
* * *
40055 CGTGCGGGAGCCTCGGGCACCATCGGCACCCTAG-GCC-CTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTC-GGAT
* * * * *
40097 CGTGCGGGAACCTCGGGCACCATCGGCACCCTAG-GCCTTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCC-TCGGAT
* * * * * *
40140 CGTGCGAGCGCCTCG-GGACCATCGGCA-CCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCT-GGTGCCTCGGAT
* * * * *
40181 CGTGCGGGAACCTCGGGCACCATCGGCACCTTGGTG-CTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * * * * * *
40224 GTACGAGAGCCT-GGGACACCATCGGTAACCTAG-GCCCCTGG-T
1 GTGCGGGAGCCTCGAG-CACCATAGGCACCCTGGTGCCTC-GGAT
* * * * *
40266 CCTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * *
40309 GTGTGGGAGCCTCG-GACACCATCGGCACCCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT
* * * * * * *
40351 CGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCT-GGTGCCTCGGAT
* * * *
40394 CGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCAGAT
1 -GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * * *
40438 GTGCGGGAGCCTCGAGTAGCATTGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
* * * *
40480 GTGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT
* * * **
40523 GTGCGAGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
40566 GTGCGGG
1 GTGCGGG
40573 CTAAAGAAAA
Statistics
Matches: 660, Mismatches: 107, Indels: 96
0.76 0.12 0.11
Matches are distributed among these distances:
40 2 0.00
41 38 0.06
42 240 0.36
43 365 0.55
44 15 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGAT
Found at i:52872 original size:43 final size:43
Alignment explanation
Indices: 52684--53435 Score: 785
Period size: 43 Copynumber: 17.8 Consensus size: 43
52674 ACCGAGCCCA
* *
52684 CAAGGGCCTAGGGTGCCGATGGTTG--CGCGGCTCCCG-AC-AC
1 CAAGGGCCTAGGTTGCCGATGG-TGCCCGAGGCTCCCGCACGAC
* * *
52724 GCAGGGGGCTAGGGTGCCGATGGTGCCCGAGGCT-CCGCACGAC
1 -CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* * * * * *
52767 CAGGGGCCTAGGGTGCTGATGATGCCTGAGGCTCCCACAC-ATC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-C
** * *
52810 CAAGCACCCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* * * *
52853 CAGGGGCCTAGCTTACCGATGGTGTCCC-AGGCTCTCGCAC-ATC
1 CAAGGGCCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-C
** * *
52896 CAAGCACC-AAGATGCCGATGGTGCCCGAGGCTCCCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
*
52938 CAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* * * *
52979 CAAGGGCCTAGGGTGCCGATGGTGCTCGAGGCTTCCGCACAAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* * *
53022 C--GGTCCTAGGGTGCCGATGGTGCCCGAGGCTCCCTGCACGAA
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC-GCACGAC
* *
53064 CAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
53107 C-AGGGCCTAGGTTGCCGATGGT-CCCGAGG--CCCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* *
53146 C-AGGGCCTAGGTTGCCGATGGTGTCCGA-GCTCTCGCA-GAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* **
53186 CAAGGGCCTAGGTT-TCGATGGTGTCTTGAGGCT-CCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGAC
* *
53228 CAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTCG-ACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC-CGCACGAC
* *
53271 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGGCTCTCGCCCCGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGA-GGCTCCCG-CACGAC
* *
53316 CAAGGGCCTAAGTTACCGATGGTGCCCGAGGCTCCCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* ** *
53359 CAAGGGCCTAGGTTGCCGGTGGTGGTCGAGGCTTCCGCACGAC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
* * * *
53402 TAAGGGCTTAAGTTGCCGATGGTGTCCGAGGCTC
1 CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
53436 TTGCATATCC
Statistics
Matches: 597, Mismatches: 84, Indels: 58
0.81 0.11 0.08
Matches are distributed among these distances:
39 33 0.06
40 18 0.03
41 116 0.19
42 138 0.23
43 211 0.35
44 50 0.08
45 31 0.05
ACGTcount: A:0.17, C:0.32, G:0.35, T:0.16
Consensus pattern (43 bp):
CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
Found at i:53484 original size:86 final size:85
Alignment explanation
Indices: 52738--53435 Score: 705
Period size: 85 Copynumber: 8.2 Consensus size: 85
52728 GGGGCTAGGG
* * * * *
52738 TGCCGATGGTGCCCGAGGCT-CCGCACGACCAGGGGCCTAGGGTGCTGATGATGC-CTGAGGCTC
1 TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTC-GAGGCTC
* ** *
52801 C-CACACATCCAAGCACCCAAGT
65 CGCAC-GA-CCAAGGGCCTAAGT
* * * * *
52823 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGCTTACCGATGGTG-TCCCAGGCTC
1 TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCT-CGAGGCTC
** *
52887 TCGCAC-ATCCAAGCACC-AAGA
65 -CGCACGA-CCAAGGGCCTAAGT
* *
52908 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCT
1 TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTC-
* *
52971 CGCACGACCAAGGGCCTAGGG
65 CGCACGACCAAGGGCCTAAGT
* * * * *
52992 TGCCGATGGTG-CTCGAGGCTTCCGCACAACC--GGTCCTAGGGTGCCGATGGTGCCCGAGGCTC
1 TGCCGATGGTGTC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCT-
* * * *
53054 CCTGCACGAACAGGGGCCTAGGG
64 CC-GCACGACCAAGGGCCTAAGT
* *
53077 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGT-CCCGAGGC-CC
1 TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCC
*
53139 GCACGACC-AGGGCCTAGGT
66 GCACGACCAAGGGCCTAAGT
* * *
53158 TGCCGATGGTGTCCGA-GCTCTCGCA-GACCAAGGGCCTAGGTT-TCGATGGTGTCTTGAGGCTC
1 TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CTCGAGGCTC
* *
53220 CGCACGACCAGGGGCCTAGGT
65 CGCACGACCAAGGGCCTAAGT
*
53241 TGCCGATGGTGTCCGAGGCTCCTCG-ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGGCT
1 TGCCGATGGTGTCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGA-GGCT
*
53305 CTCGCCCCGACCAAGGGCCTAAGT
64 C-CG-CACGACCAAGGGCCTAAGT
* * * *
53329 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGGTGGTGGTCGAGGCTTC
1 TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGC-TC
* *
53394 CGCACGACTAAGGGCTTAAGT
65 CGCACGACCAAGGGCCTAAGT
53415 TGCCGATGGTGTCCGAGGCTC
1 TGCCGATGGTGTCCGAGGCTC
53436 TTGCATATCC
Statistics
Matches: 533, Mismatches: 51, Indels: 57
0.83 0.08 0.09
Matches are distributed among these distances:
79 11 0.02
80 20 0.04
81 30 0.06
82 25 0.05
83 59 0.11
84 54 0.10
85 139 0.26
86 112 0.21
87 11 0.02
88 72 0.14
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.17
Consensus pattern (85 bp):
TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCC
GCACGACCAAGGGCCTAAGT
Found at i:53941 original size:36 final size:36
Alignment explanation
Indices: 53901--53972 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
53891 CTAAAAAAAC
*
53901 TTGGTCAATGTGCTACCAGGCGACATTCTTTTTTTT
1 TTGGTCAAAGTGCTACCAGGCGACATTCTTTTTTTT
53937 TTGGTCAAAGTGCTACCAGGCGACATTCTTTTTTTT
1 TTGGTCAAAGTGCTACCAGGCGACATTCTTTTTTTT
53973 GAAAGAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.43
Consensus pattern (36 bp):
TTGGTCAAAGTGCTACCAGGCGACATTCTTTTTTTT
Done.