Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold252
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53882
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Found at i:4588 original size:40 final size:40
Alignment explanation
Indices: 4450--4704 Score: 251
Period size: 39 Copynumber: 6.5 Consensus size: 40
4440 CTCGTTCAAG
* * ** *
4450 TGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC--A
1 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
* *
4487 TGCCTTCGGGACATAACCCGGATTT-ACAATTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
4526 TGCCTTC-GGACTTAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
4565 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG-A
1 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
** * *
4604 TGCCTTCGGGACTTAA-CCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
* * * * *
4643 GGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACGAA
* *
4683 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
4705 CAGCATTCAA
Statistics
Matches: 187, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
37 27 0.14
38 39 0.21
39 57 0.30
40 56 0.30
41 8 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
Found at i:12387 original size:40 final size:40
Alignment explanation
Indices: 12289--12550 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
12279 TCCTCGTTCA
* * * ** *
12289 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
12328 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
12368 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
12408 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
12447 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
12487 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
12527 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
12551 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
39 75 0.38
40 115 0.58
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:12466 original size:119 final size:119
Alignment explanation
Indices: 12289--12550 Score: 316
Period size: 119 Copynumber: 2.2 Consensus size: 119
12279 TCCTCGTTCA
* * *
12289 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCACACAATGCCTTCGGGACATAACCCGGATT
* * * *
12354 TAACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATATAC-ACTTAGCAC
* * *
12407 GAATGCCTTCGGGACTTAACCCGGATTTA-AAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** * * *
12471 TTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTTAGCAC
*
12527 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
12551 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
118 11 0.09
119 105 0.86
120 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTTAGCAC
Found at i:12504 original size:79 final size:79
Alignment explanation
Indices: 12289--12550 Score: 316
Period size: 79 Copynumber: 3.3 Consensus size: 79
12279 TCCTCGTTCA
* * * * *
12289 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
12354 TAACAACTCGCACG
66 TAACAACTCGCACG
**
12368 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
12433 TTAA-AACTCGCACG
65 TTAACAACTCGCACG
* * *
12447 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * *
12511 TATATTC-ACTTAGCAC-
64 TTTA-ACAAC-TCGCACG
* *
12527 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
12551 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
78 3 0.02
79 100 0.62
80 52 0.32
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:15795 original size:27 final size:27
Alignment explanation
Indices: 15764--15903 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 27
15754 TATGTTGTAA
* * *
15764 AATGACTGAAATACCCTCATCGAGTAG
1 AATGACTGAAATACCCCCATAGGGTAG
*
15791 AATGACTGAAATACCCCCATAGGTTAG
1 AATGACTGAAATACCCCCATAGGGTAG
* * *
15818 AATGACCGAAATGCCCCCACAGGGTAG
1 AATGACTGAAATACCCCCATAGGGTAG
* * * *
15845 AATGACCGAAATACTCCTATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAG
* ** *
15872 AATGACTGTAATACCCCTGTAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAG
15899 AATGA
1 AATGA
15904 ATATTTTGCC
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
AATGACTGAAATACCCCCATAGGGTAG
Found at i:15924 original size:27 final size:27
Alignment explanation
Indices: 15894--15987 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
15884 ACCCCTGTAG
* *
15894 GGTAAAATGAATATTTTGCCTTCAGGA
1 GGTAAAATGACTATTTTGCCTTCATGA
* * *
15921 GGTAATATGACTATTTTTCCCTCATGA
1 GGTAAAATGACTATTTTGCCTTCATGA
* *
15948 GATAAAATGACTATTTTGCCCTT-ATGT
1 GGTAAAATGACTATTTTG-CCTTCATGA
15975 GGTAAAATGACTA
1 GGTAAAATGACTA
15988 AAATGCCCTT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 52 0.95
28 3 0.05
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCTTCATGA
Found at i:17803 original size:40 final size:41
Alignment explanation
Indices: 17756--17941 Score: 250
Period size: 41 Copynumber: 4.6 Consensus size: 41
17746 CTCGCACAAG
* * *
17756 GCCTTCGGGTCTTAGCCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
*
17796 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
* * *
17836 GCCTTCGGATCTTAGTCCGGATATAGTCGCTTAGCGCAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
* * *
17877 GCCTTCGGATCTTAGTCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
* *
17918 GTCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
17942 CATTCGAGTA
Statistics
Matches: 131, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
40 63 0.48
41 68 0.52
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (41 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
Found at i:17897 original size:81 final size:81
Alignment explanation
Indices: 17756--17941 Score: 243
Period size: 81 Copynumber: 2.3 Consensus size: 81
17746 CTCGCACAAG
* * *
17756 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
17821 GTCGC-TAGCACAAAT
66 GTCGCTTAGCACAAAA
* * * *
17836 GCCTTCGGATCTTAGTCCGGATATAGTCGCTTAGCGCAAATGCCTTC-GGATCTTAGTCCGGATA
1 GCCTTCGGATCTTAGCCCGGATATAGTCAC-TAGCACAAATGCCTTCGGGA-CTTAGCCCGGATA
17900 TAGTCGCTTAGCACAAAA
64 TAGTCGCTTAGCACAAAA
*
17918 GTCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTC-GGATCTTAGCCCGGATAT
17942 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
80 29 0.32
81 33 0.36
82 27 0.29
83 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (81 bp):
GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCGCTTAGCACAAAA
Found at i:30614 original size:26 final size:26
Alignment explanation
Indices: 30584--30636 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30574 AATAGACGTG
30584 TTTAATTATAGTAAATGCTAAATATA
1 TTTAATTATAGTAAATGCTAAATATA
30610 TTTAATTATAGTAAATGCTAAATATA
1 TTTAATTATAGTAAATGCTAAATATA
30636 T
1 T
30637 ATGCTGGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (26 bp):
TTTAATTATAGTAAATGCTAAATATA
Found at i:36267 original size:29 final size:30
Alignment explanation
Indices: 36234--36291 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
36224 AAATTGATTT
*
36234 TCAA-GCCTAAGGGTAAAATGGTCATTTTG
1 TCAAGGCCTAAGGGCAAAATGGTCATTTTG
* * *
36263 TCAAGGTCTAGGGGCAAAGTGGTCATTTT
1 TCAAGGCCTAAGGGCAAAATGGTCATTTT
36292 ACCAAAGAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (30 bp):
TCAAGGCCTAAGGGCAAAATGGTCATTTTG
Found at i:36741 original size:46 final size:44
Alignment explanation
Indices: 36691--36861 Score: 139
Period size: 46 Copynumber: 3.7 Consensus size: 44
36681 GACGAGGGCT
*
36691 AGTGTAAGACATGTCAGGGATATGCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCAGGGACATGCATCGG-CTCGAGACAT-AGCC
* * *
36737 AGTGTAAGACATGTCTA-GGACATGCGTCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTC-AGGGACATGCATCGGCT-CGAGA-CATAGCC
* ** * *
36783 AGTGTAAGACTATGTCTGGGACATGGCATCTACTTGAGATATGAGCC
1 AGTGTAAGAC-ATGTCAGGGACAT-GCATCGGCTCGAGACAT-AGCC
*
36830 AGTGTAAGACCGTGTCTA-GGACATGACATCGG
1 AGTGTAAGA-CATGTC-AGGGACATG-CATCGG
36862 GACCTTACCC
Statistics
Matches: 100, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
45 2 0.02
46 47 0.47
47 44 0.44
48 7 0.07
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCAGGGACATGCATCGGCTCGAGACATAGCC
Found at i:36822 original size:47 final size:44
Alignment explanation
Indices: 36724--36859 Score: 130
Period size: 47 Copynumber: 3.0 Consensus size: 44
36714 GCATCGGCCT
* * **
36724 CGAGACATAAGCCAGTGTAAGACATGTCTAGGACATGCGTCGGCTA
1 CGAGATATGAGCCAGTGTAAGACATGTCTAGGACATG-G-CATCTA
* *
36770 CGAGATGAT-AGTCAGTGTAAGACTATGTCTGGGACATGGCATCTA
1 CGAGAT-ATGAGCCAGTGTAAGAC-ATGTCTAGGACATGGCATCTA
* *
36815 CTTGAGATATGAGCCAGTGTAAGACCGTGTCTAGGACATGACATC
1 C--GAGATATGAGCCAGTGTAAGA-CATGTCTAGGACATGGCATC
36860 GGGACCTTAC
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
45 5 0.07
46 21 0.28
47 48 0.64
48 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (44 bp):
CGAGATATGAGCCAGTGTAAGACATGTCTAGGACATGGCATCTA
Found at i:37981 original size:21 final size:22
Alignment explanation
Indices: 37942--37982 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
37932 TTGGAATGGT
37942 CACACGGACGTGTTGCCCCTTC
1 CACACGGACGTGTTGCCCCTTC
*
37964 CACACGGGCGTG-TGCCCCT
1 CACACGGACGTGTTGCCCCT
37983 ATTCAAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.41, G:0.27, T:0.20
Consensus pattern (22 bp):
CACACGGACGTGTTGCCCCTTC
Found at i:39874 original size:46 final size:46
Alignment explanation
Indices: 39821--39993 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
39811 TTTGGGCATT
39821 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
*** * *
39867 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTC
* *
39914 CGAGCT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
39959 CGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
39994 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 11 0.10
46 74 0.70
47 11 0.10
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:42925 original size:15 final size:15
Alignment explanation
Indices: 42905--42960 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
42895 GTATCTTGGG
42905 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
42920 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
42935 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
42950 TTTCTTTATTC
1 TTTCTTTATTC
42961 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:45405 original size:46 final size:45
Alignment explanation
Indices: 45350--45525 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
45340 CATTTGGGCA
45350 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
45396 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
45443 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
45489 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45526 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45505 original size:93 final size:93
Alignment explanation
Indices: 45346--45517 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
45336 AGGACATTTG
* **
45346 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45411 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
45439 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
45504 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
45518 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:46926 original size:40 final size:40
Alignment explanation
Indices: 46784--47012 Score: 286
Period size: 40 Copynumber: 5.8 Consensus size: 40
46774 TGGATGATAA
* * * **
46784 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
46824 CTGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
46863 CCGGGC-AA-TCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
46901 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
46941 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* ** *
46981 CCGGGCTATGTTTCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
47013 AGCTATATCC
Statistics
Matches: 167, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 34 0.20
39 37 0.22
40 94 0.56
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Done.