genome.fa.s470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3375
Parameters: 2 7 7 80 10 50 1000
Length:  52334

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2546--2770	40	5.7	40	82	7	253	25	27	22	24	2.00
2548--2763	119	1.8	120	82	7	278	25	26	21	25	2.00
8024--8080	9	5.9	9	73	15	51	35	8	21	35	1.84
8022--8084	20	3.2	20	95	0	117	36	12	19	31	1.89
8138--8214	23	3.0	27	89	10	119	33	19	19	27	1.96
8138--8234	23	4.0	24	81	11	101	30	20	21	26	1.98
8427--8490	31	2.1	31	87	0	92	35	14	23	26	1.93
9592--9617	13	2.0	13	100	0	52	38	23	15	23	1.92
10480--10790	44	6.7	46	72	15	196	24	30	18	27	1.97
10581--10798	91	2.4	94	77	11	238	24	31	18	25	1.97
17062--17174	55	2.1	55	91	0	181	27	30	20	21	1.98
17070--17187	55	2.2	55	89	1	175	28	29	20	21	1.98
17973--18289	47	6.7	46	74	8	221	23	29	19	28	1.98
17975--18289	141	2.2	140	80	7	343	23	28	19	27	1.98
18074--18286	94	2.3	91	84	7	261	23	29	19	27	1.98
23476--23579	27	3.9	27	67	5	75	36	23	7	32	1.83
23564--23703	27	5.2	27	79	0	154	37	15	20	27	1.93
23572--23704	54	2.5	54	87	0	194	36	17	20	25	1.94
24316--24423	27	4.0	27	79	5	87	19	21	21	37	1.94
24541--24640	6	16.3	6	71	17	64	21	18	13	48	1.81
24541--24608	25	2.8	24	84	6	82	22	19	13	45	1.84
26707--26840	27	5.0	27	83	0	153	36	17	20	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37927--38165	50	4.9	49	83	5	254	25	29	17	26	1.98
37975--38166	50	3.9	50	85	4	259	26	30	16	26	1.97
42954--43001	25	1.9	25	86	0	69	33	25	16	25	1.96
43038--43084	20	2.3	20	96	0	85	34	10	21	34	1.88
43134--43207	24	3.1	24	84	3	105	33	21	17	27	1.96
43133--43203	23	3.0	24	83	4	99	32	22	18	26	1.97
43422--43485	31	2.1	31	87	0	92	37	15	21	25	1.93
50937--50984	25	1.9	25	86	0	69	33	25	16	25	1.96
51031--51086	11	5.5	11	71	16	57	35	12	19	32	1.89
51020--51086	20	3.3	20	93	0	116	34	11	20	32	1.90
51137--51270	68	2.0	66	94	2	232	27	21	22	28	1.99
51136--51295	22	7.0	24	84	11	203	28	21	22	27	1.99
51488--51551	31	2.1	31	90	0	101	35	15	23	25	1.94

Tables:   1

The End!