genome.fa.s474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2618
Parameters: 2 7 7 80 10 50 1000
Length:  46416

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13767--13816	25	2.0	25	100	0	100	24	4	32	40	1.73
13975--14026	24	2.2	24	89	0	77	19	19	19	42	1.90
15497--15562	31	2.2	31	86	2	89	51	4	0	43	1.22
17607--17649	21	2.0	22	81	4	52	34	11	0	53	1.37
17607--17652	22	2.1	22	84	8	58	34	10	0	54	1.36
17710--17752	23	1.9	23	90	4	70	60	0	6	32	1.23
23084--23208	46	2.7	46	86	2	171	20	24	12	41	1.88
29208--29367	52	3.1	53	79	6	200	28	26	18	26	1.98
29164--29367	105	2.0	102	83	6	254	28	28	18	24	1.98
31103--31137	18	1.9	18	94	0	61	31	11	20	37	1.88
35382--35422	21	2.0	21	85	9	57	60	4	4	29	1.38
36423--36452	13	2.3	13	100	0	60	40	43	0	16	1.48
36592--36695	9	11.4	9	83	6	84	20	9	25	44	1.82
36614--36695	18	4.6	18	92	1	112	19	10	25	43	1.83
36614--36695	27	3.1	27	87	1	112	19	10	25	43	1.83
36856--36892	12	3.1	12	100	0	74	16	24	35	24	1.95
37708--37752	8	5.5	8	84	5	54	64	2	2	31	1.18
37866--37919	23	2.5	22	75	13	60	57	5	5	31	1.45
37882--37967	25	3.7	24	79	10	81	55	5	6	31	1.50
37988--38120	25	5.6	25	71	13	93	59	2	3	34	1.28
37981--38045	13	4.8	13	74	22	53	63	0	3	33	1.10
37988--38115	49	2.7	46	75	17	118	59	2	3	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38602--38716	30	3.8	30	89	4	187	24	3	46	25	1.68
39430--39469	14	2.8	14	92	3	62	67	5	12	15	1.38
39596--39630	14	2.5	14	90	0	52	60	5	20	14	1.54
39523--39703	85	2.1	87	83	5	222	36	19	16	27	1.93
39841--39891	14	3.6	14	77	12	50	64	1	11	21	1.36
39844--39877	16	2.1	16	94	0	59	70	0	8	20	1.13
39703--39965	106	2.5	105	84	5	329	41	16	15	26	1.88
39871--40115	76	3.3	75	85	4	316	34	20	16	28	1.95
40102--40129	14	2.0	14	100	0	56	57	7	21	14	1.61
40021--40205	89	2.1	88	84	7	248	37	19	17	25	1.93
40111--40279	73	2.3	74	85	2	232	36	19	17	26	1.94
40259--40308	14	3.6	14	81	7	57	64	4	12	20	1.43
40288--40526	78	3.2	74	82	9	278	36	19	16	26	1.93
40531--40668	71	1.9	71	94	0	240	31	18	16	34	1.93
40412--40759	159	2.2	152	83	9	420	34	17	16	31	1.92
40818--41003	72	2.7	66	81	11	221	31	23	15	30	1.95
40931--41087	85	1.8	85	91	0	260	37	21	14	26	1.92
41009--41381	74	5.0	77	79	9	350	32	21	15	30	1.94
41014--41926	157	6.0	150	74	15	548	34	21	16	28	1.95
41308--41469	91	1.8	85	87	7	234	33	19	17	29	1.94
41432--41760	72	4.4	72	76	13	308	33	22	16	26	1.96
41276--41715	157	2.8	159	85	6	560	35	20	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41590--41784	71	2.8	68	82	6	221	33	21	14	30	1.93
41701--41873	87	2.0	84	81	6	195	41	18	13	26	1.88
41777--41918	72	2.0	73	88	4	216	38	23	14	22	1.92
41432--41932	229	2.2	225	83	8	586	35	22	15	26	1.94
40872--41926	386	2.7	382	80	9	1162	34	21	15	28	1.94
42114--42383	149	1.8	147	86	4	389	34	20	15	30	1.93
42069--42404	74	4.5	75	83	7	396	33	20	15	31	1.94
42424--42759	71	4.5	75	80	10	334	31	20	14	32	1.93
42154--42677	278	1.9	278	84	7	706	33	20	14	31	1.93
42424--42778	147	2.4	145	79	11	373	34	19	14	31	1.92

Tables:   1

The End!