Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold629
Parameters: 2 7 7 80 10 50 1000
Length:  42132

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
278--361
30
2.8
30
72
1
80
27
16
25
30
1.97
620--654
17
2.1
16
89
5
52
5
14
5
74
1.19
1643--1667
9
2.8
9
100
0
50
8
0
0
92
0.40
4029--4085
26
2.2
26
83
0
78
28
17
19
35
1.94
4601--4697
30
3.2
30
76
2
106
27
27
16
27
1.97
5758--5804
20
2.3
20
85
0
67
29
36
12
21
1.91
7874--7921
13
3.6
13
85
2
69
70
6
6
16
1.28
7899--7934
19
1.9
19
88
5
56
72
5
8
13
1.27
8845--8912
21
3.2
20
80
12
66
76
4
17
1
1.03
8856--8912
5
11.0
5
77
17
55
77
3
17
1
1.00
8856--8912
16
3.7
14
80
17
60
77
3
17
1
1.00
8980--9004
12
2.1
12
100
0
50
76
0
16
8
1.02
8974--9029
18
3.1
18
76
5
51
69
3
19
7
1.27
8980--9061
30
2.7
31
81
5
105
64
1
21
12
1.33
11163--11259
30
3.2
30
76
2
106
27
27
16
27
1.97
14372--14425
20
2.7
20
82
0
63
24
20
18
37
1.94
14372--14445
30
2.5
30
86
8
98
21
20
18
39
1.93
14372--14436
20
3.2
20
71
16
53
23
21
16
38
1.93
16027--16070
14
3.8
11
81
18
54
77
9
2
11
1.08
16028--16082
13
4.5
12
80
10
58
78
5
5
10
1.08
16038--16071
14
2.5
13
95
4
59
79
5
2
11
1.02
16028--16082
25
2.2
24
87
9
76
78
5
5
10
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17166--17276
12
8.8
12
72
15
64
71
3
18
6
1.23
17166--17264
6
16.0
6
70
6
72
70
3
19
7
1.23
17147--17264
18
6.4
18
72
6
94
71
2
18
7
1.22
17225--17262
13
2.8
13
82
17
51
73
0
18
7
1.06
17159--17276
21
5.3
21
69
20
55
72
3
18
5
1.20
17279--17341
33
1.9
33
84
12
85
55
6
25
12
1.60
19118--19171
20
2.7
20
82
0
63
24
20
18
37
1.94
19118--19191
30
2.5
30
86
8
98
21
20
18
39
1.93
19118--19182
20
3.2
20
71
16
53
23
21
16
38
1.93
23337--23380
14
3.1
14
77
6
52
36
34
0
29
1.58
23327--23374
15
3.3
15
79
5
62
41
29
0
29
1.56
23596--23648
12
4.2
12
79
15
63
73
5
7
13
1.23
24669--24714
18
2.5
19
79
6
51
65
2
26
6
1.28
25579--25638
29
2.1
29
90
0
93
41
31
0
26
1.56
26095--26140
10
4.5
10
81
5
56
15
23
21
39
1.92
26092--26140
21
2.4
20
89
3
71
14
22
22
40
1.90
26268--26294
13
2.1
13
100
0
54
40
22
14
22
1.90
30425--30476
23
2.3
22
75
21
54
9
23
1
65
1.32
30434--30488
12
4.6
12
73
15
51
12
23
0
63
1.29
30470--30507
17
2.2
18
85
4
51
10
23
2
63
1.39

Tables:   1

The End!