Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1633
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34027
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:4553 original size:93 final size:93
Alignment explanation
Indices: 4438--4610 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
4428 CACCCATAAG
* *
4438 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
4503 ATGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* * *
4531 CGAACTCGGACTCAGCTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
4596 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
4611 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:4606 original size:46 final size:46
Alignment explanation
Indices: 4431--4606 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
4421 TGTAACCCAC
* *
4431 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * * * *
4477 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* * * *
4523 ACATTTCA-CGAACTCGGACTCAGCTCAACGAGTTCGGACGCTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
4570 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
4607 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.66
47 31 0.30
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:7164 original size:20 final size:20
Alignment explanation
Indices: 7121--7166 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7111 ACTGTTTTAT
*
7121 TATGGG-CCAACTGTATTAA
1 TATGGGCCCAACTGTATCAA
* *
7140 AATGGGCCCAACTGTGTCAA
1 TATGGGCCCAACTGTATCAA
7160 TATGGGC
1 TATGGGC
7167 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (20 bp):
TATGGGCCCAACTGTATCAA
Found at i:12886 original size:16 final size:17
Alignment explanation
Indices: 12854--12886 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
12844 CATCAAGAAG
12854 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
12872 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
12887 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:16621 original size:12 final size:13
Alignment explanation
Indices: 16592--16640 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
16582 GATTTTGTTT
*
16592 TTTTTTTTCAAAA
1 TTTTTTTTCGAAA
*
16605 TTTTTTTTTGAAA
1 TTTTTTTTCGAAA
16618 TTTTTTTTCG--A
1 TTTTTTTTCGAAA
16629 TTTTTTTT-GAAA
1 TTTTTTTTCGAAA
16641 CTTACTTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 1 0.03
11 9 0.29
12 1 0.03
13 20 0.65
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.67
Consensus pattern (13 bp):
TTTTTTTTCGAAA
Found at i:16634 original size:13 final size:13
Alignment explanation
Indices: 16591--16636 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
16581 AGATTTTGTT
*
16591 TTTTTTTTTCAAAA
1 TTTTTTTTTC-GAA
16605 TTTTTTTTT-GAA
1 TTTTTTTTTCGAA
*
16617 ATTTTTTTTCG-A
1 TTTTTTTTTCGAA
16629 TTTTTTTT
1 TTTTTTTT
16637 GAAACTTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 18 0.64
13 1 0.04
14 9 0.32
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:23062 original size:37 final size:37
Alignment explanation
Indices: 23012--23090 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
23002 TTATTACGAA
* *
23012 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
23049 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
23086 GTCTT
1 GTCTT
23091 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:23287 original size:47 final size:47
Alignment explanation
Indices: 23209--23400 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
23199 CCCTTCGGGA
* * * * * * *
23209 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
23256 CCCGTCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23397 CTTA
1 CTTA
23401 CTATCATTTC
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26950 original size:77 final size:80
Alignment explanation
Indices: 26798--26952 Score: 201
Period size: 77 Copynumber: 2.0 Consensus size: 80
26788 CGAATACACG
* * * *
26798 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
26863 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* *
26878 TCACTAGCATGAATGCTCTTC-GGACTTAGC-CGGAT-TAGTAACTCGCACCAATGC-CTTCGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGA
* *
26939 TCTTAGTCCGGATA
65 ACTTAGCCCGGATA
26953 TGGTCACTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
77 21 0.32
78 18 0.27
79 8 0.12
80 19 0.29
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGCCCGGATACA
Found at i:26986 original size:78 final size:79
Alignment explanation
Indices: 26812--26986 Score: 189
Period size: 78 Copynumber: 2.2 Consensus size: 79
26802 CAGCATGATT
* * *
26812 GCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
1 GCTCTTCGGGACTTAGC-CGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATAC
* *
26877 ATCACTAGCATGAAT
65 ATCACTAGCATCAAA
* * *
26892 GCTCTTC-GGACTTAGCCGGAT-TAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATAT
1 GCTCTTCGGGACTTAGCCGGATATA-TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATA-
**
26954 GGTCACTTAGCA-CAAA
64 CATCAC-TAGCATCAAA
26970 GC-CTTCGGGACTTAGCC
1 GCTCTTCGGGACTTAGCC
26987 CGGACATCAT
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
77 25 0.31
78 36 0.44
79 13 0.16
80 7 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
GCTCTTCGGGACTTAGCCGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATACA
TCACTAGCATCAAA
Found at i:26990 original size:40 final size:40
Alignment explanation
Indices: 26811--26990 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
26801 CCAGCATGAT
* * *
26811 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACCAA
* * **
26851 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACCAA
* *
26891 TGCTCTTC-GGACTTAG-CCGGAT-TAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACCAA
* *
26929 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACCAA
*
26969 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
26991 CATCATTCGA
Statistics
Matches: 117, Mismatches: 16, Indels: 14
0.80 0.11 0.10
Matches are distributed among these distances:
37 8 0.07
38 23 0.20
39 13 0.11
40 66 0.56
41 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACCAA
Found at i:27335 original size:29 final size:29
Alignment explanation
Indices: 27296--27374 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
27286 CTTAATAATC
*
27296 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27326 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
27355 AGCCCACACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27375 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27422 original size:43 final size:43
Alignment explanation
Indices: 27356--27458 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
27346 TGCATTTCAA
*
27356 GCCCACACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27399 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27442 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
27459 TGAAAAACCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:27471 original size:43 final size:43
Alignment explanation
Indices: 27356--27471 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
27346 TGCATTTCAA
* ***
27356 GCCCACACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAAAAACACAACCGTGAACACTTATT
***
27399 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAAAAACACAACCGTGAACACTTATT
*
27442 GCCCGCACACTTAGTGCTGAAAAAC-CAACC
1 GCCCGCACACTTAGTGC-CAAAAACACAACC
27472 ACTATACGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
43 64 0.96
44 3 0.04
ACGTcount: A:0.30, C:0.35, G:0.14, T:0.21
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAAAAACACAACCGTGAACACTTATT
Found at i:29338 original size:37 final size:37
Alignment explanation
Indices: 29288--29366 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
29278 TTATTACGAA
* *
29288 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
29325 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
29362 GTCTT
1 GTCTT
29367 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:29702 original size:45 final size:47
Alignment explanation
Indices: 29485--29931 Score: 643
Period size: 45 Copynumber: 10.0 Consensus size: 47
29475 CCCTTCGGGA
* * * * * * *
29485 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
29532 CCTGTCACATATATACACTTTCACA-T--T--CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29574 CTTATCACAT-T-TACAC-TTCACATTCATCACATCGGCCA-T-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29616 CTTA--AC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29659 CTTATCACATATATACACTTTCACATTCATCACATCGG-C-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29704 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29751 CTTATCACATATATACACTTTCACATTCATCACATCGG-C-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
29796 CTTATCACA-ATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29842 CTTATCAC--ATATACACTTTCACATTCATCACATCGG-C-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29885 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29932 TTACTATATT
Statistics
Matches: 365, Mismatches: 13, Indels: 44
0.86 0.03 0.10
Matches are distributed among these distances:
39 7 0.02
40 13 0.04
41 23 0.06
42 28 0.08
43 22 0.06
44 38 0.10
45 117 0.32
46 18 0.05
47 99 0.27
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:29743 original size:92 final size:92
Alignment explanation
Indices: 29485--29931 Score: 656
Period size: 92 Copynumber: 5.0 Consensus size: 92
29475 CCCTTCGGGA
* * * * * * * * *
29485 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-C-TTAGGCCTTATCACATATATACAC
29550 TTTCACA-T--T--CATCGGCCATTAGGC
64 TTTCACATTCATCACATCGGCCATTAGGC
*
29574 CTTATCACAT-T-TACAC-TTCACATTCATCACATCGGC-CATGGCCTTA--AC--ATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTA-GGCCTTATCACATATATACACT
29631 TTCACATTCATCACATCGGCCATTAGGC
65 TTCACATTCATCACATCGGCCATTAGGC
29659 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACATATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACATATATACACTT
29724 TCACATTCATCACATCGGCCATTAGGC
66 TCACATTCATCACATCGGCCATTAGGC
*
29751 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACA-ATATATACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACATATATACACTT
29815 TCACATTCATCACATCGGCCATTAGGC
66 TCACATTCATCACATCGGCCATTAGGC
29842 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACATATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACATATATACACTT
29905 TCACATTCATCACATCGGCCATTAGGC
66 TCACATTCATCACATCGGCCATTAGGC
29932 TTACTATATT
Statistics
Matches: 332, Mismatches: 11, Indels: 29
0.89 0.03 0.08
Matches are distributed among these distances:
80 15 0.05
81 1 0.00
82 2 0.01
83 1 0.00
84 5 0.02
85 26 0.08
86 17 0.05
87 9 0.03
88 28 0.08
89 55 0.17
90 38 0.11
91 44 0.13
92 91 0.27
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (92 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGC
Found at i:29893 original size:181 final size:176
Alignment explanation
Indices: 29536--29931 Score: 653
Period size: 181 Copynumber: 2.2 Consensus size: 176
29526 CTCGGCCCTG
29536 TCACATATATACACTTTCACA-T--T--CATCGGCCATTAGGCCTTATCACATTTACACTTCACA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTACACTTCACA
29596 TTCATCACATCGGCCATGGCCTTAACATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
66 TTCATCACATCGGCCATGGCCTTAACATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
29661 TATCACATATATACACTTTCACATTCATCACATCGGCTTAGGCCTTA
131 TATCACA-ATATACACTTTCACATTCATCACATCGGCTTAGGCCTTA
29708 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-T-TACAC-TTC
* *
29773 ACATTCATCACATCGG-CTTAGGCCTTATCACAATATATACTTTCACATTCATCACATCGGCCAT
63 ACATTCATCACATCGGCCAT-GGCCTTA--AC-ATATACACTTTCACATTCATCACATCGGCCAT
29837 TAGGCCTTATCAC-ATATACACTTTCACATTCATCACATCGGCTTAGGCCTTA
124 TAGGCCTTATCACAATATACACTTTCACATTCATCACATCGGCTTAGGCCTTA
29889 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29932 TTACTATATT
Statistics
Matches: 210, Mismatches: 2, Indels: 15
0.93 0.01 0.07
Matches are distributed among these distances:
172 21 0.10
173 1 0.00
175 1 0.00
177 25 0.12
178 1 0.00
179 7 0.03
180 26 0.12
181 82 0.39
182 2 0.01
183 44 0.21
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (176 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTACACTTCACA
TTCATCACATCGGCCATGGCCTTAACATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
TATCACAATATACACTTTCACATTCATCACATCGGCTTAGGCCTTA
Done.