Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3599
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53516
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Found at i:5437 original size:40 final size:40
Alignment explanation
Indices: 5372--5572 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
5362 TGGAATTCAA
* * *
5372 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
5412 CCGGTTATAGGAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
5452 CCGGATATAGTAA-TCGCAC-GATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
5490 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
5529 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
5569 CCGG
1 CCGG
5573 TTATCATCCG
Statistics
Matches: 141, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
38 31 0.22
39 45 0.32
40 65 0.46
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:5483 original size:78 final size:77
Alignment explanation
Indices: 5372--5576 Score: 268
Period size: 78 Copynumber: 2.6 Consensus size: 77
5362 TGGAATTCAA
* * *
5372 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATAGGAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACG-ATGCCTTCGGGACTTAGCCCGGTTATAAGAACTCGCACAAATG
5437 CCTTCGGGACTTAGC
64 CCTTCGGG-CTTAGC
* * * *
5452 CCGGATATAGTAATCGCACGATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCC
1 CCGGATATAGTACTCGCACGATGCCTTCGGGACTTAGCCCGGTTATAAGAACTCGCACAAATGCC
5517 TTCGGGCTTAGC
66 TTCGGGCTTAGC
* *
5529 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCGCAC-GATGCCTTCGGGACTTAGCCCGGTTAT
5577 CATCCGAATA
Statistics
Matches: 111, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
76 1 0.01
77 15 0.14
78 52 0.47
79 33 0.30
80 10 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (77 bp):
CCGGATATAGTACTCGCACGATGCCTTCGGGACTTAGCCCGGTTATAAGAACTCGCACAAATGCC
TTCGGGCTTAGC
Found at i:10008 original size:13 final size:13
Alignment explanation
Indices: 9990--10015 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9980 GGGATTTGTT
9990 TTAACTAAACTAA
1 TTAACTAAACTAA
10003 TTAACTAAACTAA
1 TTAACTAAACTAA
10016 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:13181 original size:35 final size:35
Alignment explanation
Indices: 13142--13214 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
13132 GTTGGATAGA
13142 GATAGAGTCTAAAGACTGGTTGGGTAGGATTTATT
1 GATAGAGTCTAAAGACTGGTTGGGTAGGATTTATT
** *
13177 GATAGAGTCTAGGGGCTGGTTGGGTAGGATTTATT
1 GATAGAGTCTAAAGACTGGTTGGGTAGGATTTATT
13212 GAT
1 GAT
13215 TGCATATCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.05, G:0.36, T:0.34
Consensus pattern (35 bp):
GATAGAGTCTAAAGACTGGTTGGGTAGGATTTATT
Found at i:15192 original size:21 final size:22
Alignment explanation
Indices: 15166--15208 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
15156 TCAGAGTTGG
15166 GGCCCCTG-TGCTGTTACTGGA
1 GGCCCCTGTTGCTGTTACTGGA
*
15187 GGCCCCTGTTGCTGTTATTGGA
1 GGCCCCTGTTGCTGTTACTGGA
15209 CTATAGCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.09, C:0.26, G:0.33, T:0.33
Consensus pattern (22 bp):
GGCCCCTGTTGCTGTTACTGGA
Found at i:21196 original size:57 final size:57
Alignment explanation
Indices: 21135--21253 Score: 229
Period size: 57 Copynumber: 2.1 Consensus size: 57
21125 AATTTACATA
21135 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
1 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
*
21192 TATAAGCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
1 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
21249 TATAA
1 TATAA
21254 TTGCATTATA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (57 bp):
TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
Found at i:33514 original size:37 final size:37
Alignment explanation
Indices: 33333--33506 Score: 260
Period size: 37 Copynumber: 4.7 Consensus size: 37
33323 GCTCAGACGA
* * *
33333 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
33370 AATCTCCACACATAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
33407 ACTCCCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
33444 AATC-CCTACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCC-ACACGTAGTCATCGGGTCTTACCCGGACAT
*
33481 AATCTCCACACGTAGTCATTGGGTCT
1 AATCTCCACACGTAGTCATCGGGTCT
33507 CATCCGGAAT
Statistics
Matches: 124, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
36 2 0.02
37 120 0.97
38 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:33718 original size:50 final size:48
Alignment explanation
Indices: 33664--33845 Score: 260
Period size: 48 Copynumber: 3.8 Consensus size: 48
33654 CATCGCCTAC
*
33664 ATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC--ATAT
* * * *
33714 ATATTTCACATT-GACCATTCGGCTTTACCACGTATGCATATCTCATAC
1 ATATTTCACATTAG-CCATTCGACTTTACCACATATACATATCTCATAT
33762 ATATTTCACATTAGCCATTCGGA-TTTACCACATATACATATCTCATAT
1 ATATTTCACATTAGCCATTC-GACTTTACCACATATACATATCTCATAT
*
33810 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGACTTTACCACATATA
33846 TGCATGTTCA
Statistics
Matches: 118, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
47 1 0.01
48 76 0.64
49 3 0.03
50 38 0.32
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATAT
Found at i:33850 original size:98 final size:97
Alignment explanation
Indices: 33661--33844 Score: 302
Period size: 98 Copynumber: 1.9 Consensus size: 97
33651 GCACATCGCC
33661 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA-ATATATATTTCACATT
*
33726 GACCATTCGGCTTTACCACGTATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
33759 TACATATTTCACATTAGCCATTCGGA-TTTACCACATATACATATCTC-ATATATATTTCACATT
1 TACATATTTCACACTAGCCATTC-GACTTTACCACATATACATATCTCAATATATATTTCACATT
33822 -AGCCATTCGGCTTTACCACATAT
65 GA-CCATTCGGCTTTACCACATAT
33845 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
98 43 0.52
99 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATATATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:33879 original size:47 final size:47
Alignment explanation
Indices: 33815--34008 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
33805 CATATATATT
* * * *
33815 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
33862 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33909 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
33956 TCACATTGGCCATTCGGCCTTATCTCATATATAC-TCATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCAT-GTTCACATTCA
34003 TCACAT
1 TCACAT
34009 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.01
47 132 0.99
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:33935 original size:22 final size:22
Alignment explanation
Indices: 33908--33979 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33898 GCTCACATTC
33908 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
33930 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
33954 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
33977 ATC
1 ATC
33980 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37401 original size:40 final size:40
Alignment explanation
Indices: 37344--37695 Score: 596
Period size: 40 Copynumber: 8.8 Consensus size: 40
37334 CCAGCAAGAT
* * *
37344 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37384 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37424 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37464 TGCTCTTCGAGACTTAGCCCGGATAGATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37504 TGCTCTTCAGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37544 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37584 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37624 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37664 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
37696 CTCAATTCTT
Statistics
Matches: 296, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 296 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:39081 original size:47 final size:52
Alignment explanation
Indices: 38991--39108 Score: 147
Period size: 47 Copynumber: 2.3 Consensus size: 52
38981 GAAAAAAGCA
38991 GAATGGCCAATGTTGATCGAAATGTGGAACATGCATATATGTGATA-AGGCC
1 GAATGGCCAATGTTGATCGAAATGTGGAACATGCATATATGTGATACAGGCC
* *
39042 GAATGGCCAATG-TGAT-G-AATGT-GAGCATGCATATGTGTGATACAGGCC
1 GAATGGCCAATGTTGATCGAAATGTGGAACATGCATATATGTGATACAGGCC
39090 GGAAAAATGGCCAATGTTG
1 -G---AATGGCCAATGTTG
39109 TGTAAGAATC
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
47 18 0.31
48 10 0.17
49 2 0.03
50 4 0.07
51 12 0.20
52 11 0.19
53 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.25
Consensus pattern (52 bp):
GAATGGCCAATGTTGATCGAAATGTGGAACATGCATATATGTGATACAGGCC
Found at i:41253 original size:39 final size:37
Alignment explanation
Indices: 41168--41500 Score: 232
Period size: 39 Copynumber: 8.4 Consensus size: 37
41158 TAAGATTGAG
41168 AGTGATATATCCGGTGCTAG-CCCGAAGAGGCATTCGTGCT
1 AGTGATATATCC---GCTAGTCCCGAAGA-GCATTCGTGCT
41208 AGTGATATATCCGCTAGTCCCGAAGGAGCCATTCGTGGCT
1 AGTGATATATCCGCTAGTCCCGAA-GAG-CATTCGT-GCT
*
41248 A-TGATATATCGGGCTAAGTCCCGAGAGAGCATTCGTGCT
1 AGTGATATATC-CGCT-AGTCCCGA-AGAGCATTCGTGCT
* *
41287 AGTGAATGTATCCGGGCAAGTCCCGAA-AGCATTCGTGCT
1 AGTG-ATATATCC--GCTAGTCCCGAAGAGCATTCGTGCT
* *
41326 AGTGATGTATCCGACTAAAGTTCCTTG-AGAGCAATGTCCGTCGCT
1 AGTGATATATCCG-CT--AG-TCC-CGAAGAGC-AT-T-CGT-GCT
* *
41371 AGTGATCTATTCCGGGCTAAGTCTCGAAAGAGCATTCGTGCT
1 AGTGATATA-TCC--GCT-AGTCCCG-AAGAGCATTCGTGCT
*
41413 AGTG--ATATCCGGACTAATCCCGAAGAGCATTCG-GCT
1 AGTGATATATCC-G-CTAGTCCCGAAGAGCATTCGTGCT
* *
41449 AGTGATGTATCGGGGCTTAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATC--CGC-TAGTCCCGAAGAGCATTCGTGCT
41488 AGTGATATATCCG
1 AGTGATATATCCG
41501 TGGCTAAACG
Statistics
Matches: 243, Mismatches: 17, Indels: 69
0.74 0.05 0.21
Matches are distributed among these distances:
36 8 0.03
37 18 0.07
38 41 0.17
39 62 0.26
40 35 0.14
41 29 0.12
42 12 0.05
43 4 0.02
44 5 0.02
45 15 0.06
46 11 0.05
47 2 0.01
48 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (37 bp):
AGTGATATATCCGCTAGTCCCGAAGAGCATTCGTGCT
Found at i:41320 original size:79 final size:79
Alignment explanation
Indices: 41168--41507 Score: 319
Period size: 79 Copynumber: 4.2 Consensus size: 79
41158 TAAGATTGAG
*
41168 AGTGATATATCCGGTGCT-AG-CCCGAAGAGGCATTCGTGCTAGTGATATATCC--GCT-AGTCC
1 AGTGATATAT-CGG-GCTAAGTCCCGAAGA-GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCC
41228 CGAAGGAGCCATTCGTGGCT
63 CGAA-GAG-CATTCGT-GCT
41248 A-TGATATATCGGGCTAAGTCCCGAGAGAGCATTCGTGCTAGTGAATGTATCCGGGC-AAGTCCC
1 AGTGATATATCGGGCTAAGTCCCGA-AGAGCATTCGTGCTAGTG-ATGTATCCGGGCTAAGTCCC
41311 GAA-AGCATTCGTGCT
64 GAAGAGCATTCGTGCT
* * * * *
41326 AGTGATGTATCCGACTAAAGTTCCTTG-AGAGCAATGTCCGTCGCTAGTGATCTATTCCGGGCTA
1 AGTGATATATCGGGCT-AAG-TCC-CGAAGAGC-AT-T-CGT-GCTAGTGATGTA-TCCGGGCTA
*
41390 AGTCTCGAAAGAGCATTCGTGCT
58 AGTCCCG-AAGAGCATTCGTGCT
* * * *
41413 AGTGATAT-CCGGACTAA-TCCCGAAGAGCATTCG-GCTAGTGATGTATCGGGGCTTAGT-CCGA
1 AGTGATATATCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGA
41474 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
41488 AGTGATATATCCGTGGCTAA
1 AGTGATATAT-CG-GGCTAA
41508 ACGGAAGGTT
Statistics
Matches: 220, Mismatches: 17, Indels: 48
0.77 0.06 0.17
Matches are distributed among these distances:
75 23 0.10
76 2 0.01
77 15 0.07
78 25 0.11
79 46 0.21
80 23 0.10
81 6 0.03
82 16 0.07
83 15 0.07
84 14 0.06
85 9 0.04
86 7 0.03
87 19 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
AGTGATATATCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGA
AGAGCATTCGTGCT
Found at i:44999 original size:49 final size:49
Alignment explanation
Indices: 44890--45006 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 49
44880 GTGAATGAGT
* *
44890 AATATATGAGATAAGGCCG-AATGGCCATGTGATGAATGTGAAACATGC
1 AATACATGTGATAAGGCCGAAATGGCCATGTGATGAATGTGAAACATGC
*
44938 AATACATGTGATAAGGGCCGAAATGGCCAATGTGATGAAT-TGAGACATGC
1 AATACATGTGATAA-GGCCGAAATGGCC-ATGTGATGAATGTGAAACATGC
**
44988 -ATATGTGTGAT-AGGCCGAA
1 AATACATGTGATAAGGCCGAA
45007 GCCAATGATG
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
47 7 0.11
48 13 0.21
49 14 0.23
50 16 0.26
51 11 0.18
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (49 bp):
AATACATGTGATAAGGCCGAAATGGCCATGTGATGAATGTGAAACATGC
Found at i:45150 original size:51 final size:48
Alignment explanation
Indices: 45033--45216 Score: 187
Period size: 51 Copynumber: 3.7 Consensus size: 48
45023 ATGAACATCA
*
45033 TATATGGTGGTAACGCCGAATGGCTAATGTGAAAT-ATATATGAGATATG
1 TATAT-GTGGTAA-GCCGAATGGATAATGTGAAATAATATATGAGATATG
* *
45082 TATATGTGGT-A-TCGAATGGATAATGTGAAATAATGTATGCAAGATAATG
1 TATATGTGGTAAGCCGAATGGATAATGTGAAATAATATATG--AGAT-ATG
* *
45131 CATACGTGGTAAGCCGAATGG-TCAATGTGAAATATAATATATGAGATATG
1 TATATGTGGTAAGCCGAATGGAT-AATGTG-AA-ATAATATATGAGATATG
* *
45181 TATATGTGGTAAAGTCGAATTGGATAGTGTGAAATA
1 TATATGTGGT-AAGCCGAA-TGGATAATGTGAAATA
45217 GAAGGGGGAA
Statistics
Matches: 112, Mismatches: 11, Indels: 23
0.77 0.08 0.16
Matches are distributed among these distances:
45 18 0.16
46 6 0.05
47 1 0.01
48 9 0.08
49 16 0.14
50 16 0.14
51 26 0.23
52 10 0.09
53 10 0.09
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAGCCGAATGGATAATGTGAAATAATATATGAGATATG
Done.