genome.fa.s492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3703
Parameters: 2 7 7 80 10 50 1000
Length:  135119

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14452--14850	44	8.8	44	73	11	304	32	17	21	28	1.96
14409--14886	232	2.1	232	98	0	929	32	18	20	28	1.97
16547--16581	3	11.7	3	100	0	70	34	0	0	65	0.93
19529--19569	22	1.9	21	85	5	55	53	7	0	39	1.29
28711--28862	52	2.9	52	80	6	173	27	15	25	30	1.96
29606--29637	13	2.5	13	94	0	55	6	31	40	21	1.78
34718--34754	14	2.5	16	83	16	53	37	13	16	32	1.87
36104--36255	52	2.9	53	81	6	166	26	18	25	30	1.98
37049--37106	20	2.9	20	78	0	71	22	32	27	17	1.96
49089--49114	9	2.9	9	100	0	52	30	0	11	57	1.34
51180--51254	28	2.7	27	89	4	123	18	24	25	32	1.97
51467--51641	61	2.9	60	80	10	171	28	18	25	28	1.98
57861--57898	8	5.0	8	90	9	62	60	0	0	39	0.97
57861--57904	15	3.0	15	84	15	65	61	0	0	38	0.96
57861--57904	7	6.1	7	92	7	63	61	0	0	38	0.96
58343--58395	6	8.8	6	100	0	106	66	0	0	33	0.92
62166--62283	54	2.2	54	78	0	128	22	22	23	31	1.98
76037--76105	35	2.0	35	100	0	138	42	26	14	17	1.87
81022--81063	15	2.7	15	80	20	50	66	4	21	7	1.35
84140--84498	47	7.7	46	71	14	200	27	18	29	24	1.98
84140--84498	94	3.8	91	78	7	330	27	18	29	24	1.98
86441--86490	25	2.0	25	100	0	100	28	12	32	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91281--91642	47	7.7	47	69	16	180	26	20	29	23	1.99
91284--91640	94	3.8	93	74	12	293	27	19	29	24	1.98
99027--99060	16	2.1	16	88	5	50	8	0	14	76	1.01
101564--101689	63	2.0	63	98	0	243	39	16	15	27	1.89
114037--114070	15	2.2	16	89	5	52	73	0	0	26	0.83
114894--114944	11	4.7	10	86	13	66	27	33	0	39	1.57
114937--114976	21	1.9	22	90	10	66	25	22	7	45	1.78
116118--116227	7	15.7	7	100	0	220	28	0	14	57	1.38
116726--116783	30	1.9	30	85	0	80	27	50	18	3	1.63
116845--116887	18	2.4	18	88	0	59	18	27	9	44	1.80
118833--119006	27	6.4	27	83	4	197	27	14	27	29	1.96
118834--118989	82	1.9	81	88	3	233	26	15	28	29	1.96
128788--129042	133	1.9	137	85	11	357	36	4	4	54	1.42
130596--130686	42	2.2	40	83	11	105	32	24	18	24	1.97
131163--131191	12	2.3	13	94	5	51	62	0	0	37	0.96
132137--132226	40	2.3	38	79	11	110	28	18	20	32	1.96
132137--132228	41	2.3	39	78	9	107	29	18	20	31	1.96
134016--134056	16	2.5	17	80	15	50	70	2	0	26	0.99
134028--134052	13	1.9	13	100	0	50	76	0	0	24	0.80
134041--134280	118	2.1	113	82	14	287	55	5	4	34	1.42

Tables:   1

The End!