genome.fa.s496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2074
Parameters: 2 7 7 80 10 50 1000
Length:  88159

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2681--2763	35	2.4	35	82	8	98	46	22	4	25	1.71
3092--3211	56	2.1	56	98	0	231	45	9	23	22	1.81
4431--4565	40	3.5	40	91	7	208	24	20	28	26	1.99
4405--4565	40	4.3	39	87	9	207	24	21	29	24	1.99
4431--4598	79	2.2	76	84	7	205	26	20	27	26	1.99
12255--12497	120	2.1	117	85	5	319	25	20	27	25	1.99
12202--12464	40	6.7	40	86	6	331	24	21	28	25	1.99
19033--19084	26	2.0	26	92	7	88	23	15	23	38	1.92
19647--19759	28	4.1	28	82	2	113	38	21	23	17	1.94
19865--19923	26	2.2	26	81	3	64	27	11	22	38	1.89
24599--24718	59	2.0	59	93	0	204	37	16	7	38	1.77
24935--25096	35	4.6	35	77	4	157	42	20	8	29	1.80
28984--29075	42	2.2	42	90	0	139	34	20	15	29	1.93
29223--29292	25	2.8	25	89	4	97	25	24	25	24	2.00
30212--30299	27	3.1	27	71	16	79	36	10	14	38	1.80
30276--30373	27	3.7	26	80	9	90	26	7	22	43	1.79
30405--30523	27	4.4	27	80	4	123	37	6	23	31	1.81
30395--30523	54	2.4	54	80	3	145	37	7	22	32	1.83
32838--32929	42	2.2	42	86	0	121	34	22	15	27	1.94
33077--33146	25	2.8	25	84	4	88	24	22	27	25	2.00
33959--34010	27	1.9	28	84	7	72	17	21	23	38	1.93
34055--34164	27	3.9	27	74	13	78	32	8	17	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34120--34216	27	3.6	26	76	8	88	25	7	21	45	1.77
34248--34339	27	3.4	27	76	8	89	41	7	20	30	1.80
35935--35970	18	1.9	18	88	5	54	47	16	5	30	1.70
48509--48537	12	2.4	12	100	0	58	6	31	27	34	1.83
50918--51001	42	2.0	44	85	4	118	26	17	22	33	1.96
50927--51016	42	2.1	42	81	6	101	28	15	23	32	1.95
61174--61304	40	3.3	39	82	4	154	29	26	18	25	1.98
61177--61357	80	2.3	80	80	9	192	28	27	19	24	1.99
80204--80409	40	5.2	40	91	0	324	28	27	20	23	1.99

Tables:   1

The End!