genome.fa.s497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3090
Parameters: 2 7 7 80 10 50 1000
Length:  84052

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3686--3807	30	4.1	29	72	11	95	33	20	3	42	1.68
4010--4067	23	2.7	22	75	17	59	70	6	13	8	1.32
4065--4103	19	2.0	20	85	14	55	56	2	41	0	1.13
4177--4226	21	2.4	22	80	10	59	70	0	30	0	0.88
4180--4215	14	2.6	14	95	4	65	66	0	33	0	0.92
4904--4944	17	2.3	18	83	8	57	39	17	7	36	1.77
4916--4961	17	2.8	16	90	6	65	34	13	13	39	1.83
5110--5270	18	9.3	16	70	20	76	31	12	13	43	1.80
5209--5270	16	3.8	16	83	12	81	30	11	11	46	1.75
5209--5277	16	4.3	15	80	14	75	33	10	10	46	1.71
5926--6010	44	2.0	41	89	10	129	40	12	11	35	1.80
17443--17476	18	1.9	17	88	5	50	20	0	29	50	1.49
24708--24735	5	5.6	5	100	0	56	82	0	0	17	0.68
25069--25144	29	2.6	29	93	0	125	34	28	10	26	1.90
32139--32171	5	6.6	5	100	0	66	81	0	0	18	0.68
32479--32562	42	2.0	42	100	0	168	45	11	7	35	1.69
33125--33162	20	1.9	19	89	5	58	73	2	0	23	0.95
33717--33749	12	2.8	12	100	0	66	66	0	9	24	1.20
34644--34693	10	5.0	10	81	13	59	68	2	8	22	1.26
37870--38076	70	3.0	70	89	0	315	24	13	28	33	1.93
39350--39405	26	2.2	26	93	0	94	30	5	25	39	1.78
43299--43347	23	2.1	23	82	14	57	61	12	6	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44261--44448	47	4.0	46	86	2	214	22	15	29	32	1.95
44248--44467	94	2.3	94	80	4	237	24	15	28	32	1.95
44269--44481	95	2.3	94	78	7	216	24	15	28	31	1.95
51243--51326	26	3.2	26	96	0	150	35	23	5	34	1.80
51938--52028	3	30.0	3	79	2	101	59	1	6	32	1.30
56733--56782	3	16.7	3	100	0	100	66	0	0	34	0.92
59653--59767	27	4.3	27	89	5	162	36	23	24	15	1.94
61386--61495	26	4.2	26	96	0	175	36	23	5	34	1.78
61879--61903	13	1.9	13	100	0	50	40	4	8	48	1.51
62967--62992	3	8.7	3	100	0	52	65	0	0	34	0.93
63557--63612	3	18.7	3	84	0	76	25	0	7	67	1.15
63625--63655	16	1.9	16	93	0	53	6	12	3	77	1.08
63848--63960	55	2.1	55	100	0	226	24	23	14	37	1.92
66113--66166	24	2.2	25	78	15	60	59	7	5	27	1.47
66652--66736	26	3.3	25	93	6	152	3	2	17	76	1.04
67364--67722	91	4.0	91	78	6	247	35	18	16	29	1.93
67401--67707	90	3.5	88	77	9	266	32	18	16	32	1.93
67639--67853	74	2.9	73	83	4	259	30	19	16	33	1.94
67632--67873	75	3.2	76	82	4	296	33	17	16	32	1.93
67713--68019	166	1.9	165	86	2	445	32	18	15	33	1.92
67532--68066	240	2.2	240	95	1	966	33	18	15	32	1.93
67872--68069	75	2.7	75	87	1	292	32	20	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68023--68118	49	2.0	49	97	0	183	32	20	16	30	1.95
68075--68306	72	3.1	73	84	10	290	34	17	16	31	1.93
67876--68245	198	1.9	198	88	4	566	32	18	15	32	1.93
68260--68365	54	1.9	55	84	5	144	38	19	14	27	1.90
68345--68378	13	2.5	13	90	4	50	58	8	11	20	1.59
68220--68842	140	4.4	140	95	1	1106	37	20	16	25	1.93
68400--68505	54	1.9	54	83	9	135	37	18	15	28	1.91
68540--68645	54	1.9	54	85	9	144	37	19	15	27	1.92
68679--68784	54	1.9	54	83	9	135	37	17	15	29	1.91
68220--68842	279	2.2	280	94	1	1106	37	20	16	25	1.93
68775--68939	72	2.3	71	87	3	242	41	21	14	22	1.89
72409--72927	17	29.9	17	68	17	193	43	10	12	33	1.77
72387--72431	21	2.1	21	84	8	56	37	4	8	48	1.55
72410--72927	34	14.9	34	73	11	243	43	11	12	33	1.77
72558--72906	36	9.8	36	74	11	174	42	10	12	33	1.78
72861--72916	16	3.4	16	76	13	60	42	8	14	33	1.77
73079--73129	17	3.0	16	77	11	57	72	1	0	25	0.95
73274--73311	11	3.5	11	86	10	51	0	21	0	78	0.74
73466--73504	14	2.8	13	85	14	51	0	2	12	84	0.72
73583--73611	10	2.9	10	100	0	58	0	37	0	62	0.96
73583--73614	13	2.4	14	90	10	50	0	37	0	62	0.95
73982--74098	30	3.9	29	77	11	94	44	3	22	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73997--74098	30	3.4	30	84	2	134	44	3	22	29	1.71
74094--74128	14	2.4	15	90	4	54	28	0	2	68	1.04
74370--74587	54	4.1	55	84	9	290	37	16	16	29	1.91
74370--74567	106	1.9	105	91	4	326	34	17	16	31	1.93
74566--74600	14	2.5	14	90	0	52	60	2	17	20	1.49
74688--74934	84	2.8	87	80	11	281	36	18	18	26	1.94
74847--74880	16	2.1	16	88	0	50	64	5	11	17	1.45
74688--74941	91	2.9	88	82	10	315	37	18	18	26	1.93
74864--75182	123	2.6	123	94	1	548	36	21	14	26	1.92
75337--75562	122	1.9	121	84	4	303	34	20	14	30	1.92
75022--75820	190	4.2	192	97	1	1531	35	20	13	30	1.92
75527--75753	122	1.9	122	82	0	292	33	21	14	31	1.93
83901--83981	20	4.2	20	67	17	64	38	7	12	41	1.71
83961--84052	16	5.6	15	77	13	85	46	14	9	29	1.76

Tables:   1

The End!