Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1505
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76804
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Found at i:6922 original size:39 final size:38
Alignment explanation
Indices: 6862--6937 Score: 109
Period size: 40 Copynumber: 2.0 Consensus size: 38
6852 CTGAATTTAT
*
6862 TTCATAATTAATCGACATTTCACA-TACATTTTCCAAA
1 TTCATAATTAATCGACATTTCACATTACATTCTCCAAA
*
6899 TTCATAAATTAATCATACATTTCACATTACATTCTCCAA
1 TTCAT-AATTAATC-GACATTTCACATTACATTCTCCAA
6938 TTCCAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 5 0.15
38 8 0.24
39 10 0.29
40 11 0.32
ACGTcount: A:0.38, C:0.22, G:0.01, T:0.38
Consensus pattern (38 bp):
TTCATAATTAATCGACATTTCACATTACATTCTCCAAA
Found at i:9274 original size:45 final size:44
Alignment explanation
Indices: 9117--9290 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 44
9107 GGTTGAGCAT
9117 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
9162 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
9210 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
9255 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9291 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.29
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:12199 original size:15 final size:15
Alignment explanation
Indices: 12169--12223 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
12159 GTATCTTGGG
12169 TTTCTTTATT-TGGA
1 TTTCTTTATTCTGGA
12183 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
12198 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
12213 TTTCTTTATTC
1 TTTCTTTATTC
12224 GGTTTTCCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
14 12 0.33
15 22 0.61
16 2 0.06
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14663 original size:46 final size:46
Alignment explanation
Indices: 14613--14788 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
14603 TGGTTGAGCA
14613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
14659 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
14706 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14752 -CCTGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14789 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 65 0.60
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14771 original size:93 final size:93
Alignment explanation
Indices: 14610--14780 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
14600 GGATGGTTGA
*
14610 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAAT
*
14675 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
14703 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAA
14767 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
14781 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAAT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:18669 original size:17 final size:17
Alignment explanation
Indices: 18647--18688 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
18637 AAATAAACAA
18647 AGTAAGCTTTATAGCTT
1 AGTAAGCTTTATAGCTT
18664 AGTAAGCTTTATAGCTT
1 AGTAAGCTTTATAGCTT
18681 AGTAAGCT
1 AGTAAGCT
18689 CGTATGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (17 bp):
AGTAAGCTTTATAGCTT
Found at i:19746 original size:21 final size:20
Alignment explanation
Indices: 19718--19756 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
19708 CAAAACTTGT
19718 ATAACTATCATCAAACATCC
1 ATAACTATCATCAAACATCC
19738 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
19757 TAAAATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAACTATCATCAAACATCC
Found at i:27751 original size:158 final size:158
Alignment explanation
Indices: 27458--27772 Score: 612
Period size: 158 Copynumber: 2.0 Consensus size: 158
27448 GGTTGTGTCG
*
27458 CACGACCGTGTCCTGCTTCATTTGCTTCTCCCATGCCTGTGTATGGATGCAAATGCTCGTTCACA
1 CACGACCGTGTCCTGCTTCATTTGCTTCTCCCATGCCTGTGTATGGATGCAAACGCTCGTTCACA
27523 GTCTTGAGCACAAGTGGTGGGCACGAGCGTGTCGCACACCCGTGTTAATTGTTCAATTTCAACCA
66 GTCTTGAGCACAAGTGGTGGGCACGAGCGTGTCGCACACCCGTGTTAATTGTTCAATTTCAACCA
27588 CGGCTTATAGACACGGGCGTGTTGCCTA
131 CGGCTTATAGACACGGGCGTGTTGCCTA
*
27616 CACGGCCGTGTCCTGCTTCATTTGCTTCTCCCATGCCTGTGTATGGATGCAAACGCTCGTTCACA
1 CACGACCGTGTCCTGCTTCATTTGCTTCTCCCATGCCTGTGTATGGATGCAAACGCTCGTTCACA
27681 GTCTTGAGCACAAGTGGTGGGCACGAGCGTGTCGCACACCCGTGTTAATTGTTCAATTTCAACCA
66 GTCTTGAGCACAAGTGGTGGGCACGAGCGTGTCGCACACCCGTGTTAATTGTTCAATTTCAACCA
27746 CGGCTTATAGACACGGGCGTGTTGCCT
131 CGGCTTATAGACACGGGCGTGTTGCCT
27773 GCCCGTGTTA
Statistics
Matches: 155, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
158 155 1.00
ACGTcount: A:0.19, C:0.28, G:0.25, T:0.28
Consensus pattern (158 bp):
CACGACCGTGTCCTGCTTCATTTGCTTCTCCCATGCCTGTGTATGGATGCAAACGCTCGTTCACA
GTCTTGAGCACAAGTGGTGGGCACGAGCGTGTCGCACACCCGTGTTAATTGTTCAATTTCAACCA
CGGCTTATAGACACGGGCGTGTTGCCTA
Found at i:33510 original size:33 final size:33
Alignment explanation
Indices: 33473--33568 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 33
33463 CTATGGGCCA
* *
33473 TACTGTTATCTGAAAAGGGGCTAAGGCCCAGT-T
1 TACTGTTATCTGAAAA-GGGCTTAGGCCCAGTAC
*
33506 TACTG-TATTCTGAAAAGGGCTTCGGCCCAGTACC
1 TACTGTTA-TCTGAAAAGGGCTTAGGCCCAGTA-C
* *
33540 TATTGTTATCTGAATAGGGCTTAGGCCCA
1 TACTGTTATCTGAAAAGGGCTTAGGCCCA
33569 ATGGGATTGA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
32 15 0.28
33 13 0.25
34 23 0.43
35 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (33 bp):
TACTGTTATCTGAAAAGGGCTTAGGCCCAGTAC
Found at i:37673 original size:33 final size:33
Alignment explanation
Indices: 37636--37731 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 33
37626 CTATGGGCCA
* *
37636 TACTGTTATCTGAAAAGGGGCTAAGGCCCAGT-T
1 TACTGTTATCTGAAAA-GGGCTTAGGCCCAGTAC
*
37669 TACTG-TATTCTGAAAAGGGCTTCGGCCCAGTACC
1 TACTGTTA-TCTGAAAAGGGCTTAGGCCCAGTA-C
* *
37703 TATTGTTATCTGAATAGGGCTTAGGCCCA
1 TACTGTTATCTGAAAAGGGCTTAGGCCCA
37732 ATGGGATTGA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
32 15 0.28
33 13 0.25
34 23 0.43
35 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (33 bp):
TACTGTTATCTGAAAAGGGCTTAGGCCCAGTAC
Found at i:40789 original size:40 final size:40
Alignment explanation
Indices: 40734--40951 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
40724 TGGATGATAA
* * * *
40734 CCGGGATAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
40774 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
40814 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
40854 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
40894 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
40934 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
40952 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48954 original size:40 final size:40
Alignment explanation
Indices: 48899--49115 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
48889 TGGATGATAA
* * *
48899 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
48939 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48979 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49018 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
49058 CCGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
49098 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49116 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 54 0.33
40 108 0.67
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49031 original size:79 final size:80
Alignment explanation
Indices: 48899--49115 Score: 298
Period size: 79 Copynumber: 2.7 Consensus size: 80
48889 TGGATGATAA
* * * *
48899 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTG
48963 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
*
48979 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
49043 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * * *
49058 CCGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
49116 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
78 1 0.01
79 88 0.71
80 35 0.28
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATAT
Found at i:49113 original size:119 final size:119
Alignment explanation
Indices: 48899--49115 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 119
48889 TGGATGATAA
* * * *
48899 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTCG
* *
48964 TGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
66 AGCGAGTTACTATATCCGGGCTAAATCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49018 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-TATCCGGGCTATGTCCCAAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCAAAGGCATTC
*
49082 GAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
65 GAGCGAGTTA-CTATATCCGGGCTAAAT-CCGAAGG
49116 TACTTGGCTT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 9 0.11
119 76 0.89
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTCG
AGCGAGTTACTATATCCGGGCTAAATCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57517 original size:42 final size:43
Alignment explanation
Indices: 57459--57568 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
57449 ATCTATTCGA
57459 GATTTACGTGTAAGACCATGTCTGGGAC-ATCCGCATC-ATATTT
1 GATTT-CGTGTAAGACCATGTCTGGGACAAT-CGCATCGATATTT
* *
57502 GATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTT
1 GATTTCGTGTAAGACCATGTCTGGGACAATCGCATCGATATTT
* * * *
57545 GATTACATGTAAGACTACGTCTGG
1 GATTTCGTGTAAGACCATGTCTGG
57569 AATGTTGGCA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTGGGACAATCGCATCGATATTT
Found at i:59242 original size:40 final size:40
Alignment explanation
Indices: 59118--59382 Score: 304
Period size: 40 Copynumber: 6.7 Consensus size: 40
59108 TTGAATGCTG
* * * * *
59118 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAA
** * * *
59158 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAA-A
* *
59198 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
*
59238 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
*
59278 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
59318 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * *
59357 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
59383 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.17
40 152 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:59400 original size:79 final size:80
Alignment explanation
Indices: 59119--59415 Score: 228
Period size: 80 Copynumber: 3.7 Consensus size: 80
59109 TGAATGCTGT
* ** * * * **
59119 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * **
59182 TGTGCGAGATAC-AAGTT
64 CGTGCGAGTTACTAA-AA
* * * * ** * *
59199 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
* *
59264 TGCGAGTTATTAAAT
66 TGCGAGTTACTAAAA
* ** * *
59279 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
59343 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
59358 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
59416 TACGTGATTT
Statistics
Matches: 186, Mismatches: 27, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
78 16 0.09
79 46 0.25
80 115 0.62
81 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:66859 original size:39 final size:39
Alignment explanation
Indices: 66758--66971 Score: 261
Period size: 40 Copynumber: 5.4 Consensus size: 39
66748 ATATCCGGAC
* * * *
66758 TAAGATCCGAAGGCATTTGTGCGAGATA-CAAGTTCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTATTAA-ATCCGGGT
* * *
66798 TAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
66838 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
66877 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* * * *
66917 TAAGTCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
66955 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
66972 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 22 0.14
39 59 0.38
40 74 0.47
41 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
Found at i:66874 original size:79 final size:77
Alignment explanation
Indices: 66711--66973 Score: 303
Period size: 79 Copynumber: 3.3 Consensus size: 77
66701 TTGAATGCTG
* * * * **
66711 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAATCCGGGTTAAG-TCCGAAGGCA-T
* * *
66775 TGTGCGAGATACAAGT
63 TGTGCGAGTTATAA-A
* * *
66791 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATT-G
66856 TGCGAGTTATTAAA
65 TGCGAGTTA-TAAA
* *
66870 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTGT
*
66935 GTGAGTTACTAAA
66 GCGAGTTA-TAAA
* *
66948 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66974 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
78 37 0.23
79 79 0.49
80 37 0.23
81 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTGT
GCGAGTTATAAA
Found at i:66991 original size:78 final size:79
Alignment explanation
Indices: 66712--67006 Score: 222
Period size: 79 Copynumber: 3.7 Consensus size: 79
66702 TGAATGCTGT
* ** * * * ** *
66712 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCGAAGGCATTC
* **
66776 GTGCGAGATAC-AAGTT
64 GTGCGAGTTACTAA-AA
* * * * ** * *
66792 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTCGT
* *
66857 GCGAGTTATTAAAT
66 GCGAGTTACTAAAA
* ** * *
66871 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATT-GT
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTCGT
*
66935 GTGAGTTACTAAAA
66 GCGAGTTACTAAAA
* * * *
66949 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGT-CCGAAGG
67007 TACGTGATTT
Statistics
Matches: 184, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
77 8 0.04
78 52 0.28
79 81 0.44
80 36 0.20
81 7 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTCGT
GCGAGTTACTAAAA
Found at i:69894 original size:20 final size:19
Alignment explanation
Indices: 69871--69932 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
69861 ACATGGTTGA
69871 TATGATATGCACATGACATG
1 TATGATATGCACATGA-ATG
69891 TATGATATGCACCATGAATG
1 TATGATATGCA-CATGAATG
* *
69911 GATGAAATGGCACATG-ATG
1 TATGATAT-GCACATGAATG
69930 TAT
1 TAT
69933 TCATAATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.14
20 24 0.65
21 8 0.22
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (19 bp):
TATGATATGCACATGAATG
Found at i:70035 original size:26 final size:26
Alignment explanation
Indices: 69976--70094 Score: 137
Period size: 25 Copynumber: 4.8 Consensus size: 26
69966 GAGGAAGTGC
*
69976 AAAAGGGCTTATGCCCTAGTTTA-TG
1 AAAAGGGCTTATGCCCCAGTTTATTG
70001 AAAAGGGCTTATGCCCCAGTTTTATTG
1 AAAAGGGCTTATGCCCCAG-TTTATTG
70028 AAAA-GGCTGTATGCCCCAGTTTATTG
1 AAAAGGGCT-TATGCCCCAGTTTATTG
*
70054 AAAA-GGC-TATTGCCCCAG-TTA-TC
1 AAAAGGGCTTA-TGCCCCAGTTTATTG
70077 AAAAGGGC-T-TGCCCCAGT
1 AAAAGGGCTTATGCCCCAGT
70095 ATTAAAAGAG
Statistics
Matches: 86, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
22 8 0.09
23 5 0.06
24 9 0.10
25 26 0.30
26 22 0.26
27 16 0.19
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:72137 original size:1 final size:1
Alignment explanation
Indices: 72133--73969 Score: 1550
Period size: 1 Copynumber: 1837.0 Consensus size: 1
72123 TTTAAGCCCC
* * * * *
72133 TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTATTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * * *
72198 TTTTTTTTTTTTTAGTCTTTTTTTTTATTTTTTTTTTTTTGTTTTATTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** *
72263 TTTTTTTTTTTATTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *** ** * * ** * * *
72328 ATTTTTTTTTTTTAAATTTTTTTTTTTTTTTTCATCTTATTTTTTTTTCGTTTTTTTGTTATTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *** * * * *
72393 TTTCTTTTTCTTTCTTTTTTTTACCTTTTTCTTTTTTTTTATTTATTTTTTTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * **** * *
72458 TTTGTTTTTTTTTTTTTATTTTTTTTTTTTTTGCCCTTTTTTTTCTTTTTTTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * ****** *
72523 TATTTTTTTTCTTTATTTTTTCTTTTTTTTTTTTTTTTTTTTCCCACCTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** ** * *
72588 TTTTTTTTATTTTTTTTTTTCTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTACTCTTCTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
72653 TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * ****** * * ****
72718 TTGTTTTATTTTTTTTTTTTCTTTTTCTTTCTTTTCCGCCCTTTTTTGTTTTTTTTCTTTTCCCC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
**** * *
72783 TTTTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTATTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * ** *
72848 TTGTTTTTTTTGTCTTTTTTATTTTTTGTTTTTTTTTTATATATTTAGTTTTTTTTTTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * ** ** * * * * *
72913 TTTTTTTTTTCTTTTTTTTATTTTTTGTTTTTTCCTCCTTTTTATTATCTTTTGTTTTTTTTATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
72978 TTCTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTCTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
73043 TTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * **** *
73108 TTTTTCTTTTTGTTTTATTTTTTTTTTGTTTTTTATATTTTTGTTCTTTTTAGAATTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * **
73173 GTTTTTTTTTTTTTTTTTTTATTTTATTTTTGTTCTTTTTTTTTTTTTTTTTTTTCCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** * * * * *
73238 TTATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTATATTTCTTTGTTA
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
73303 TCTTTTTTCTTTTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTCTTTTTTTTTCTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * * * * *
73368 TTTTCTTCCTTTTTTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTCTTTTTTTTTTTCTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * **
73433 TTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTATTTTTTATTTTTTTTTTTCTTTTTCGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * * * * * *
73498 TTTTTTTTTTGATATTTTCTTTTTTTTTTTTTGTGTCTTTTGTTTTTTTTTCTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *** * * *
73563 TTTTTTTTTTTTTTTTTTTCTTTAAATTTCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * ** * *
73628 TTTTTCTTTTTTTTGTTTTTTCTTTTGTTTTTTTTTTGTTTTTTTTCCTTTTTTTTTTGTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * * *
73693 TTTTTTTTATTTTTTTTTTTTTTTCTTATTTATTTCTTTTTTTTGTTTATGTTTTTGTTTTATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * * ** **
73758 TTTTTTTTTTTTTAATTTTCTTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTAGTTTTTTTTTAAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * ** * * * * *
73823 GTTTTTGTTTTCTTAGTCTTTTCTTTTTTTTATTTTTATTTTTTTTTCTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * *
73888 TTTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTTATATTTTTTTCTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
73953 TTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTT
73970 AAAAATTTTC
Statistics
Matches: 1442, Mismatches: 394, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 1442 1.00
ACGTcount: A:0.04, C:0.06, G:0.03, T:0.87
Consensus pattern (1 bp):
T
Found at i:72160 original size:36 final size:33
Alignment explanation
Indices: 72105--72195 Score: 83
Period size: 35 Copynumber: 2.6 Consensus size: 33
72095 GTTTATGGTG
* *
72105 TTTTATTTTTTTTTTTTTTTTAAGCCCCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTAAACCCC--TTTTT
** ***
72140 TTTTTTTTTTTTTTTCTTTTTTTTATTTCTTTTT
1 TTTTTTTTTTTTTTT-TTTTTTAAACCCCTTTTT
72174 TTCTTTTTTTTTTTTTTTTTTT
1 TT-TTTTTTTTTTTTTTTTTTT
72196 GTTTTTTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
34 13 0.28
35 27 0.57
36 7 0.15
ACGTcount: A:0.04, C:0.08, G:0.01, T:0.87
Consensus pattern (33 bp):
TTTTTTTTTTTTTTTTTTTTTAAACCCCTTTTT
Found at i:73672 original size:867 final size:856
Alignment explanation
Indices: 72132--73969 Score: 2240
Period size: 867 Copynumber: 2.1 Consensus size: 856
72122 TTTTAAGCCC
*
72132 CTTTTTTTTTTTTTTTTTTTTT-TCTTTTTTTTATTTCTTTTTTTCTTTTTTTTTTTTTTTTTTT
1 CTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTT-TTTTTTTTTTTCTTTTTTTTTTTTTTTTTTT
*
72196 GTTTTTTTTTTTTTTAGTCTTTTTTTTTATTTTTTTTTTTTTGTTTTATTTTTTTTTTTTTTTTT
65 -TTTTTTTTTTTTTT--T-TTTTTTTTT-TTTTTTTTTTTTTGTTTTATTTTTTTTTTATTTTTT
* * * *** * * *
72261 TTTTTTTTTTTTTATTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
125 TTTTGTTTTTTATATTTTTGTTCTTTTTGAATTTTTCTTTTGTTTTTTTTTTTTTTTTTTTATTT
*
72326 TGATTTTTTTTTTTTAAATTTTTTTTTTTTTTTTCATCTTATTTTTTTTTCGTTTTTTTGTTATT
190 TGATTTTTTTCTTTT--ATTTTTTTTTTTTTTTTCATCTTATTTTTTTTTCGTTTTTTTGTTATT
*
72391 ATTTTCTTTTTCTTTCTTTTTTTTACCTTTTTCTTTTTTTTTATTTATTTTTTTTTTTATTTTTT
253 ATTTTCTTTTTCTTTCTTTTTTTTACATTTTTCTTTTTTTTTATTTATTTTTTTTTTTATTTTTT
72456 TTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTTGCCCTTTTTTTTCTTTTTTTTTTTATTTTTT
318 TTTTTGTTTTTTTTTTTTTATTTTTTTTTTTTTTGCCCTTTTTTTTCTTTTTTTTTTTATTTTTT
* * *
72521 TTTATTTTTTTTCTTTATTTTTTCTTTTTTTTTTTTTTTTTTTTCCCACCTTTTTTTTTCTTTTT
383 GTTATTTTGTTTCTTTATTTTTTCTTTTTTTTTTTTCTTTTTTTCCCACCTTTTTTTTTCTTTTT
*
72586 TTTTTTTTTTATTTTTTTTTTTCTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTACTCTTCT
448 TTTTTTTTTTATTTTTTTTTTTCTTTTTTCTTTTTAATTTTTTTTTTTTTTTTTTTTA-TCTTCT
72651 TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTT
512 TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTT
72716 TTTTGTTTTATTTTTTTTTTTTCTTTTTCTTTCTTTTCCGCCCTTTTTTGTTTTTTTTCTTTTCC
577 TTTTGTTTTATTTTTTTTTTTTCTTTTTCTTTCTTTT-CGCCCTTTTTTGTTTTTTTTCTTTT--
* * ** *
72781 CCTTTTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTATTTTTTTTTTT
639 -CGTTT---CTTTTTTTGTTTTTTTTCCTTTTTTTTTTGTTTTTATTTTTTTTATTTTTTTTTTT
* * *
72846 TTTTGTT-TTTTTTGTCTTTTTTATT-TTT-TGTTTTTTTTTTATATATTTAGTTTTTTTTTTT-
700 TTTTCTTATTTATT-TCTTTTTT-TTGTTTATGTTTTTGTTTTAT-T-TTT--TTTTTTTTTTTA
* * *
72907 TTTTTCTTTTTTTTTTCT-TTTTTTTATTTTTTGTTTTTTCCTCCTTTTTATT-AT-CTTTTGTT
759 ATTTTCTTTTTTTTTT-TGTTTTTTT-TTTTTT-TTTTGTACT--TTTTTATTAATGCTTTTGTT
* * *
72969 TT-TT-TTATTTTCTTTTTTTTTTTTTTGTTTTTTTTT
819 TTCTTAGTATTTTCTTTTTTTTATTTTTATTTTTTTTT
73005 -TTTTTTTTTTTTTTTTTTTCTTCTCTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
1 CTTTTTTTTTTTTTTTTTTT-TTCTCTTTTT-TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
73069 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTT-TCTTTTTGTTTTATTTTTTTT
64 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTAT-TTTTT-TTTTATTTTTTTT
73133 TTGTTTTTTATATTTTTGTTCTTTTTAGAATTTTTCTTTTGTTTTTTTTTTTTTTTTTTTATTTT
127 TTGTTTTTTATATTTTTGTTCTTTTT-GAATTTTTCTTTTGTTTTTTTTTTTTTTTTTTTATTTT
* *
73198 -ATTTTTGTTCTTTT-TTTTTTTTTTTTTTTTCCT-TTTTTTTTTATTTC-TTTTTTT-TT-TT-
191 GATTTTT-TTCTTTTATTTTTTTTTTTTTTTTCATCTTATTTTTT-TTTCGTTTTTTTGTTATTA
* * *
73256 TTTT-TTTTT-TTTTTTTTTTTTA-ATTTTTTTTTTATATTTCTTTGTTATCTTTTTTCTTTT-T
254 TTTTCTTTTTCTTTCTTTTTTTTACATTTTTCTTTT-T-TTT-TAT-TTAT-TTTTTT-TTTTAT
* * *
73317 TTTTTTTTCTT-TTTCTTTTTTTTTTTTTTTTTCTTTTTTTTTCTTTCTTTTTTTTCTTCCTTTT
313 TTTTTTTT-TTGTTT-TTTTTTTTTTATTTTTT-TTTTTTTTGC--CCTTTTTTTTCTT--TTTT
*****
73381 TTTTT-TTTTTTGTT-TTTTGTTT-TTT-TTTTTTC-TTTTTTTTTTTCTTTTTTTCTTTTTTTT
371 TTTTTATTTTTTGTTATTTTGTTTCTTTATTTTTTCTTTTTTTTTTTTCTTTTTTTCCCACCTTT
* **
73441 TTTTTTTTTTTTTTTTTCTGTTTTATTTTTTATTTTT-TTTTTTCTTTTTCGTTTTTTTTTTTTT
436 TTTTTTCTTTTTTTTTT-T-TTTTATTTTTT-TTTTTCTTTTTTCTTTTTAATTTTTTTTTTTTT
73505 TTTGATATTT-TCTT-TTTTTTT-TTTTGTGTCTTTTGTTTTTTTTTCTTTTTTTTTTTTTTTTT
498 TTT--T-TTTATCTTCTTTTTTTCTTTT-T-T-TTTT-TTTTTTTTT-TTTTTTTTTTTTTTTTT
* * * * *
73567 TTTTTTTTTTTTTTTCTTTAAATTTCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTCTTTT-T
555 TTTTTTTTTTTTTTT-TTT--ATTT-TTTTGTTTTATTTTTTTTTTTTCTTTTTCTTTCTTTTCG
** *
73631 TTCTTTTTT-TTGTTTTTTCTTTT-GTTT-TTTTTTTGTTTTTTTTCCTTTTTTTTTTGTTTTTG
616 CCCTTTTTTGTT-TTTTTTCTTTTCGTTTCTTTTTTTGTTTTTTTTCCTTTTTTTTTTGTTTTTA
73693 TTTTTTTTATTTTTTTTTTTTTTTCTTATTTATTTCTTTTTTTTGTTTATGTTTTTGTTTTATTT
680 TTTTTTTTATTTTTTTTTTTTTTTCTTATTTATTTCTTTTTTTTGTTTATGTTTTTGTTTTATTT
* *
73758 TTTTTTTTTTTTTAATTTTCTTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTAGTTTTTTTTTAAT
745 TTTTTTTTTTTTTAATTTTCTTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTACTTTTTTATTAAT
* *
73823 GTTTTTGTTTTCTTAGTCTTTTCTTTTTTTTATTTTTATTTTTTTTT
810 GCTTTTGTTTTCTTAGTATTTTCTTTTTTTTATTTTTATTTTTTTTT
* * *
73870 CTTTTTTTTTTTTTTTTTTTTTGTCTTTTTTTTTTTTTTTTTTT-TTTTTTCTTTTTTTCTTTTT
1 CTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTT
* * * * *
73934 ATATTTTTTTCTTGTTTTTTTTGTTTTTTTTTTTTT
66 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
73970 AAAAATTTTC
Statistics
Matches: 851, Mismatches: 67, Indels: 104
0.83 0.07 0.10
Matches are distributed among these distances:
861 16 0.02
862 15 0.02
863 72 0.08
864 40 0.05
865 65 0.08
866 44 0.05
867 143 0.17
868 62 0.07
869 72 0.08
870 79 0.09
871 55 0.06
872 40 0.05
873 48 0.06
874 42 0.05
875 21 0.02
876 4 0.00
877 33 0.04
ACGTcount: A:0.04, C:0.06, G:0.03, T:0.87
Consensus pattern (856 bp):
CTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTATTTTTTTTTTATTTTTTTTTTGT
TTTTTATATTTTTGTTCTTTTTGAATTTTTCTTTTGTTTTTTTTTTTTTTTTTTTATTTTGATTT
TTTTCTTTTATTTTTTTTTTTTTTTTCATCTTATTTTTTTTTCGTTTTTTTGTTATTATTTTCTT
TTTCTTTCTTTTTTTTACATTTTTCTTTTTTTTTATTTATTTTTTTTTTTATTTTTTTTTTTGTT
TTTTTTTTTTTATTTTTTTTTTTTTTGCCCTTTTTTTTCTTTTTTTTTTTATTTTTTGTTATTTT
GTTTCTTTATTTTTTCTTTTTTTTTTTTCTTTTTTTCCCACCTTTTTTTTTCTTTTTTTTTTTTT
TTATTTTTTTTTTTCTTTTTTCTTTTTAATTTTTTTTTTTTTTTTTTTTATCTTCTTTTTTTCTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTGTTTT
ATTTTTTTTTTTTCTTTTTCTTTCTTTTCGCCCTTTTTTGTTTTTTTTCTTTTCGTTTCTTTTTT
TGTTTTTTTTCCTTTTTTTTTTGTTTTTATTTTTTTTATTTTTTTTTTTTTTTCTTATTTATTTC
TTTTTTTTGTTTATGTTTTTGTTTTATTTTTTTTTTTTTTTTAATTTTCTTTTTTTTTTTGTTTT
TTTTTTTTTTTTTGTACTTTTTTATTAATGCTTTTGTTTTCTTAGTATTTTCTTTTTTTTATTTT
TATTTTTTTTT
Done.