Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 102 of 325
Found at i:32978998 original size:13 final size:13
Alignment explanation
Indices: 32978980--32979006 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32978970 GTTTTGAGTG
32978980 ACAAATAGATTTT
1 ACAAATAGATTTT
32978993 ACAAATAGATTTT
1 ACAAATAGATTTT
32979006 A
1 A
32979007 GATATGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (13 bp):
ACAAATAGATTTT
Found at i:32979100 original size:19 final size:20
Alignment explanation
Indices: 32979068--32979113 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
32979058 CGAAAAATAA
32979068 TTTCTGGAAAATAACTTACT
1 TTTCTGGAAAATAACTTACT
*
32979088 TTTCTGG-AAATAATTTACT
1 TTTCTGGAAAATAACTTACT
32979107 TTTCTGG
1 TTTCTGG
32979114 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTCTGGAAAATAACTTACT
Found at i:32981756 original size:20 final size:20
Alignment explanation
Indices: 32981733--32981791 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
32981723 TAAACATGGT
32981733 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
32981753 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
32981773 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
32981792 GGTATTCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:32981773 original size:11 final size:11
Alignment explanation
Indices: 32981737--32981791 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32981727 CATGGTATGT
32981737 ATGATATGCAC
1 ATGATATGCAC
* *
32981748 ATGACATG--T
1 ATGATATGCAC
32981757 ATGATATGCAC
1 ATGATATGCAC
*
32981768 ATGATATG--T
1 ATGATATGCAC
32981777 ATGATATGCAC
1 ATGATATGCAC
32981788 ATGA
1 ATGA
32981792 GGTATTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:32982053 original size:25 final size:24
Alignment explanation
Indices: 32981842--32982057 Score: 308
Period size: 24 Copynumber: 9.0 Consensus size: 24
32981832 GAGGAAGTGC
32981842 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
32981866 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * * *
32981890 AAAAGGGCTTCTGCTCGAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
32981914 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
32981938 AAAAGGGCTTCTGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
32981962 AAAAGGGCTTCTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32981986 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
32982010 AAAAGGGCTTTTGCCCCAGTTTTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
32982034 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32982058 ATGATAAAGC
Statistics
Matches: 172, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
24 162 0.94
25 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:32984564 original size:12 final size:12
Alignment explanation
Indices: 32984547--32984576 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32984537 AAGGATGGGG
32984547 GAAGGGGAAGGA
1 GAAGGGGAAGGA
32984559 GAAGGGGAAGGA
1 GAAGGGGAAGGA
*
32984571 AAAGGG
1 GAAGGG
32984577 AAGATCAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (12 bp):
GAAGGGGAAGGA
Found at i:32985346 original size:61 final size:60
Alignment explanation
Indices: 32985228--32985378 Score: 139
Period size: 59 Copynumber: 2.5 Consensus size: 60
32985218 TTGGTCTAAT
* * *
32985228 AACAAATTTAGCGCTCTAATGTTTAC-ACATTCTATCAATTTGATCTTAAATATAAAAACTTC
1 AACAAATTTAGCCCT-TAATGTTTACAAAATTCTATCAATTTGATCTTAAATA-AAAAA-ATC
* *
32985290 AACAAATTTAGCCCTTAATGTTTACAAAATT-TGTC-ATTTTAGT-TTAAATTAAAAAAATC
1 AACAAATTTAGCCCTTAATGTTTACAAAATTCTATCAATTTGA-TCTTAAA-TAAAAAAATC
* * * **
32985349 AATAAAATTAGCCCTCAACATTTACAAAAT
1 AACAAATTTAGCCCTTAATGTTTACAAAAT
32985379 GATAAACTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
59 27 0.36
60 15 0.20
61 16 0.21
62 18 0.24
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (60 bp):
AACAAATTTAGCCCTTAATGTTTACAAAATTCTATCAATTTGATCTTAAATAAAAAAATC
Found at i:32988031 original size:24 final size:23
Alignment explanation
Indices: 32987995--32988049 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
32987985 AAAAATCATG
*
32987995 TATCGGAAAGCTCAAGAGAGCTTA
1 TATCGGGAAGCTCAAGAGAGC-TA
* * *
32988019 TATCGGGATGCTCATGTGAGCTA
1 TATCGGGAAGCTCAAGAGAGCTA
*
32988042 TAACGGGA
1 TATCGGGA
32988050 CACTCTTGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 9 0.35
24 17 0.65
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (23 bp):
TATCGGGAAGCTCAAGAGAGCTA
Found at i:32996578 original size:5 final size:5
Alignment explanation
Indices: 32996568--32996596 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
32996558 ATTAAACTAT
32996568 TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATA
32996597 TTTATTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:32999193 original size:17 final size:17
Alignment explanation
Indices: 32999171--32999205 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
32999161 TTGCTAAGTT
*
32999171 TTCCATATTACTGTTTC
1 TTCCATATTACTATTTC
32999188 TTCCATATTACTATTTC
1 TTCCATATTACTATTTC
32999205 T
1 T
32999206 CCCGTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.23, G:0.03, T:0.54
Consensus pattern (17 bp):
TTCCATATTACTATTTC
Found at i:33001791 original size:22 final size:23
Alignment explanation
Indices: 33001761--33001808 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
33001751 CAAGAGAACT
*
33001761 TATATCGG-ATGCTCATATGAGC
1 TATAACGGAATGCTCATATGAGC
* *
33001783 TATAACGGAATGCTCTTGTGAGC
1 TATAACGGAATGCTCATATGAGC
33001806 TAT
1 TAT
33001809 GGTGTGTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (23 bp):
TATAACGGAATGCTCATATGAGC
Found at i:33002279 original size:43 final size:43
Alignment explanation
Indices: 33002232--33002601 Score: 411
Period size: 43 Copynumber: 8.6 Consensus size: 43
33002222 TTATGTAAAA
* *
33002232 AAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
33002275 AAACGCCACTAAAGAACATGACCTTCAGTGGCGCTTTTTCCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* **
33002318 AAACGCCGCTAAAGAACATGACCTTTACCGGCATTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
33002361 AAATGCCACTAAAGAACATGTCCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
33002404 AAACGCCGCTAAAGAACACGTCATTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* *
33002447 AAACGCCGCTAAAAAACATGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * ***
33002490 AAATGCTGCTAAAGAACATGACCTTTAGCAATGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * * * * *
33002533 AAAGGCCACTATA-AA-ATAGACCTTTAGCGACACTTTTCTCAT
1 AAACGCCGCTAAAGAACAT-GACCTTTAGCGGCGCTTTTCCCAC
* *
33002575 AAACGCTGCTAAAAAACATGACCTTTA
1 AAACGCCGCTAAAGAACATGACCTTTA
33002602 AAAAAATAAA
Statistics
Matches: 274, Mismatches: 50, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
41 2 0.01
42 30 0.11
43 240 0.88
44 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:33002466 original size:129 final size:128
Alignment explanation
Indices: 33002236--33002601 Score: 473
Period size: 129 Copynumber: 2.8 Consensus size: 128
33002226 GTAAAAAAAC
*
33002236 GCCACTAAAGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCACTAAAGAACATGACCTTC
1 GCCACTAAAGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCACTAAAGAACA-GACCTTT
* * * *
33002301 AGTGGCGCTTTTTCCATAAACGCCGCTAAAGAACATGACCTTTACCGGCATTTTTCCCACAAAT
65 AGTGGCGCTTTTCCCATAAACGCCGCTAAAAAACATGACCTTTACCGGCACTTTTACCACAAAT
* ** * * *
33002365 GCCACTAAAGAACATGTCCTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAAGAACACGTCATTT
1 GCCACTAAAGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCACTAAAGAACA-GACCTTT
* * *
33002430 AGTGGCGCTTTTCCCACAAACGCCGCTAAAAAACATGACCTTTAGCGGCGCTTTTACCACAAAT
65 AGTGGCGCTTTTCCCATAAACGCCGCTAAAAAACATGACCTTTACCGGCACTTTTACCACAAAT
** ** * *
33002494 GCTGCTAAAGAACATGACCTTTAGCAATGCTTTTCCCACAAAGGCCACTATAA-AATAGACCTTT
1 GCCACTAAAGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCACTA-AAGAACAGACCTTT
* * * * *
33002558 AGCGACACTTTTCTCATAAACGCTGCTAAAAAACATGACCTTTA
65 AGTGGCGCTTTTCCCATAAACGCCGCTAAAAAACATGACCTTTA
33002602 AAAAAATAAA
Statistics
Matches: 203, Mismatches: 33, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
128 43 0.21
129 158 0.78
130 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (128 bp):
GCCACTAAAGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCACTAAAGAACAGACCTTTA
GTGGCGCTTTTCCCATAAACGCCGCTAAAAAACATGACCTTTACCGGCACTTTTACCACAAAT
Found at i:33006374 original size:40 final size:41
Alignment explanation
Indices: 33006310--33006415 Score: 128
Period size: 41 Copynumber: 2.6 Consensus size: 41
33006300 GGTTTTCACA
* *
33006310 AAAAAAGCCATTATAGCTCAAATTTTAAG-GGCATTTTTG-CT
1 AAAAACGCCATTATAGCTC-AATTTTAAGTGGC-GTTTTGCCT
*
33006351 AAAAACGCCATTATAGCTCAATTTTAGGTGGCGTTTTGCCT
1 AAAAACGCCATTATAGCTCAATTTTAAGTGGCGTTTTGCCT
* *
33006392 AAAAACG-CACTATTGCTCAATTTT
1 AAAAACGCCATTATAGCTCAATTTT
33006416 GATTTTTTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
40 28 0.48
41 30 0.52
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (41 bp):
AAAAACGCCATTATAGCTCAATTTTAAGTGGCGTTTTGCCT
Found at i:33006555 original size:16 final size:17
Alignment explanation
Indices: 33006529--33006563 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
33006519 TATTAAAATA
33006529 TTAAATATTTAATTTTT
1 TTAAATATTTAATTTTT
33006546 TTAAAT-TTTAATTTTT
1 TTAAATATTTAATTTTT
33006562 TT
1 TT
33006564 GAAGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTAAATATTTAATTTTT
Found at i:33007236 original size:21 final size:21
Alignment explanation
Indices: 33007218--33007259 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
33007208 ATACTAAATT
*
33007218 CTAAATCCTAGTCCATAAACC
1 CTAAATCCTAGACCATAAACC
*
33007239 CTAAATCTTAGACCATAAACC
1 CTAAATCCTAGACCATAAACC
33007260 TACACCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.31, G:0.05, T:0.24
Consensus pattern (21 bp):
CTAAATCCTAGACCATAAACC
Found at i:33007631 original size:15 final size:14
Alignment explanation
Indices: 33007611--33007666 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
33007601 TTAATATAAA
33007611 CCCTAAATCCCTATC
1 CCCTAAA-CCCTATC
*
33007626 CCCT-AACCACTAAC
1 CCCTAAACC-CTATC
* *
33007640 CCTTAATCCCTATC
1 CCCTAAACCCTATC
33007654 CCCATAAACCCTA
1 CCC-TAAACCCTA
33007667 AATCATAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
13 2 0.06
14 15 0.47
15 15 0.47
ACGTcount: A:0.30, C:0.46, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCCTATC
Found at i:33007757 original size:14 final size:14
Alignment explanation
Indices: 33007736--33007784 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
33007726 CCCCAACACT
*
33007736 TAAACCATAAACCA
1 TAAACCATAATCCA
* *
33007750 TAATCCATAATCCC
1 TAAACCATAATCCA
*
33007764 TAACACCATAATCCG
1 TAA-ACCATAATCCA
33007779 TAAACC
1 TAAACC
33007785 TTAAAATAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.20
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:33008193 original size:40 final size:40
Alignment explanation
Indices: 33008174--33008489 Score: 243
Period size: 40 Copynumber: 8.0 Consensus size: 40
33008164 GTCACTAAAT
*
33008174 CTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
* * *
33008214 GTCGACCTATAGCGGCGTTTTTCAAAAAGCACTGCTAATG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
* *
33008254 GTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAATG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
* * *
33008294 CTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
* * **** * * **
33008334 C-C-A-CTAAAGC-TC--AACACAAAACG-GCGGCGTTGTG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGC-TAATG
** * * **
33008368 CTAAC-ATTTTTTGCGGCGTTTTTCAAAAAGCGCAACTAATG
1 CT--CGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
* * * * * * *
33008409 GTCTACCTATAACGACATTTTTTAAAAAGCACCGCTAATG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
* *
33008449 CTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATG
1 CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
33008489 C
1 C
33008490 CACTAAAGCT
Statistics
Matches: 208, Mismatches: 58, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
33 3 0.01
34 10 0.05
36 1 0.00
37 8 0.04
38 4 0.02
39 3 0.01
40 166 0.80
41 10 0.05
42 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (40 bp):
CTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
Found at i:33008507 original size:155 final size:155
Alignment explanation
Indices: 33008225--33008953 Score: 960
Period size: 155 Copynumber: 4.7 Consensus size: 155
33008215 TCGACCTATA
* *
33008225 GCGGCGTTTTTCAAAAAGCACTGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
1 GCGGCGTTTTTCAAAAAGCGCAGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
* *
33008290 AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCCACTAAAGCTCAACACAAAA
66 AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACACAAAA
**
33008355 CGGCGGCGTTGTGC-TAACATTTTTT
131 CAACGGCGTTGTGCTTAA-ATTTTTT
* * * * * *
33008380 GCGGCGTTTTTCAAAAAGCGCAACTAATGGTCTACCTATAACGACATTTTTTAAAAAGCACCGCT
1 GCGGCGTTTTTCAAAAAGCGCAGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
*
33008445 AATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACACAAAA
66 AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACACAAAA
* * *
33008510 CAATGGCGTTGTACTTAATTTTTTT
131 CAACGGCGTTGTGCTTAAATTTTTT
* * * * **
33008535 GTGGCGTTTTTCAAAAAGTGCTGCTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAGCGTTGCT
1 GCGGCGTTTTTCAAAAAGCGCAGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
* * * * * * **
33008600 AATGGTCAACCTATAACAGTGTTTTTTAAAAA-CGGCCACTAATGCTGCTAAAG-TCAACACAAA
66 AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGC-GCCACTAATGCCACTAAAGCTCAACACAAA
** * * *
33008663 ACGGCGGTGTTGTGCTAAAAATTTTT
130 ACAACGGCGTTGTGCTTAAATTTTTT
* * *
33008689 GCGGCATTTTTCAAAAAACGCAGCTAATGGTCGACCTATAGCGACGTTTTTTAAAAAGCGCCGCT
1 GCGGCGTTTTTCAAAAAGCGCAGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
* *
33008754 AATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACACCAAA
66 AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACACAAAA
* * * *
33008819 CAATGGAGTTATGCTTAATTTTTTT
131 CAACGGCGTTGTGCTTAAATTTTTT
* * * *
33008844 GTGGCGTTTTTCAAAAAGCGCCGCTAATAGTCGACCTATAGCGGCGTTTTTTAAAAAGTGCCGCT
1 GCGGCGTTTTTCAAAAAGCGCAGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
* * *
33008909 AATGCTCTATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGC
66 AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGC
33008954 TTGATCTATA
Statistics
Matches: 488, Mismatches: 82, Indels: 8
0.84 0.14 0.01
Matches are distributed among these distances:
154 127 0.26
155 358 0.73
156 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (155 bp):
GCGGCGTTTTTCAAAAAGCGCAGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCT
AATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACACAAAA
CAACGGCGTTGTGCTTAAATTTTTT
Found at i:33008581 original size:40 final size:40
Alignment explanation
Indices: 33008537--33008614 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
33008527 ATTTTTTTGT
* *
33008537 GGCGTTTTTCAAAAAGTGCTGCTAATGGTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCTGCTAATGGTCAACCTATAGC
*
33008577 GGCGTTTTTCAAAAAGCGTTGCTAATGGTCAACCTATA
1 GGCGTTTTTCAAAAAGCGCTGCTAATGGTCAACCTATA
33008615 ACAGTGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCTGCTAATGGTCAACCTATAGC
Found at i:33008624 original size:40 final size:40
Alignment explanation
Indices: 33008538--33008631 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
33008528 TTTTTTTGTG
* * * *
33008538 GCGTTTTTCAAAAAGTGCTGCTAATGGTCGACCTATAGCG
1 GCGTTTTTCAAAAAGCGCTGCTAATGGTCAACCTATAACA
*
33008578 GCGTTTTTCAAAAAGCGTTGCTAATGGTCAACCTATAACA
1 GCGTTTTTCAAAAAGCGCTGCTAATGGTCAACCTATAACA
* *
33008618 GTGTTTTTTAAAAA
1 GCGTTTTTCAAAAA
33008632 CGGCCACTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCGCTGCTAATGGTCAACCTATAACA
Found at i:33008745 original size:40 final size:40
Alignment explanation
Indices: 33008695--33008798 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
33008685 TTTTGCGGCA
*
33008695 TTTTTCAAAAAACGCAGCTAATGGTCGACCTATAGCGACG
1 TTTTTCAAAAAACGCAGCTAATGCTCGACCTATAGCGACG
* * * * *
33008735 TTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
1 TTTTTCAAAAAACGCAGCTAATGCTCGACCTATAGCGACG
*
33008775 TTTTTCAAAAAGCGCCA-CTAATGC
1 TTTTTCAAAAAACG-CAGCTAATGC
33008799 CACTAAAGCT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 54 0.98
41 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (40 bp):
TTTTTCAAAAAACGCAGCTAATGCTCGACCTATAGCGACG
Found at i:33008787 original size:309 final size:310
Alignment explanation
Indices: 33008227--33008954 Score: 1136
Period size: 309 Copynumber: 2.4 Consensus size: 310
33008217 GACCTATAGC
*
33008227 GGCGTTTTTCAAAAAGCACTGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAA
1 GGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAA
* * *
33008292 TGCTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCCACTAAAGCTCAACACAAAACG
66 TGCTCAATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCTACTAAAGCTCAACACAAAACG
* * * * *
33008357 GCGGCGTTGTGCTAACATTTTTTGCGGCGTTTTTCAAAAAGCGCAACTAATGGTCTACCTATAAC
131 GCGGCGTTGTGCTAAAAATTTTTGCGGCATTTTTCAAAAAACGCAACTAATGGTCGACCTATAAC
33008422 GACATTTTTTAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAA
196 GACATTTTTTAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAA
* *
33008487 TGCCACTAAAGCTCAACACAAAACAATGGCGTTGTACTTAATTTTTTTGT
261 TGCCACTAAAGCTCAACACAAAACAATGGAGTTATACTTAATTTTTTTGT
* * **
33008537 GGCGTTTTTCAAAAAGTGCTGCTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAGCGTTGCTAA
1 GGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAA
* * * * * * *
33008602 TGGTCAACCTATAACAGTGTTTTTTAAAAA-CGGCCACTAATGCTGCTAAAG-TCAACACAAAAC
66 TGCTCAATCTATAGCAGCGTTTTTCAAAAAGC-GCCGCTAATGCTACTAAAGCTCAACACAAAAC
* * *
33008665 GGCGGTGTTGTGCTAAAAATTTTTGCGGCATTTTTCAAAAAACGCAGCTAATGGTCGACCTATAG
130 GGCGGCGTTGTGCTAAAAATTTTTGCGGCATTTTTCAAAAAACGCAACTAATGGTCGACCTATAA
* *
33008730 CGACGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTA
195 CGACATTTTTTAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTA
* *
33008795 ATGCCACTAAAGCTCAACACCAAACAATGGAGTTATGCTTAATTTTTTTGT
260 ATGCCACTAAAGCTCAACACAAAACAATGGAGTTATACTTAATTTTTTTGT
* * *
33008846 GGCGTTTTTCAAAAAGCGCCGCTAATAGTCGACCTATAGCGGCGTTTTTTAAAAAGTGCCGCTAA
1 GGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAA
*
33008911 TGCTCTATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCT
66 TGCTCAATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCT
33008955 TGATCTATAA
Statistics
Matches: 373, Mismatches: 43, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
309 273 0.73
310 100 0.27
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (310 bp):
GGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGGCGTTTTTTAAAAAGCGCCGCTAA
TGCTCAATCTATAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCTACTAAAGCTCAACACAAAACG
GCGGCGTTGTGCTAAAAATTTTTGCGGCATTTTTCAAAAAACGCAACTAATGGTCGACCTATAAC
GACATTTTTTAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACTAA
TGCCACTAAAGCTCAACACAAAACAATGGAGTTATACTTAATTTTTTTGT
Found at i:33008901 original size:40 final size:40
Alignment explanation
Indices: 33008846--33008974 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
33008836 ATTTTTTTGT
33008846 GGCGTTTTTCAAAAAGCGCCGCTAATAG-TCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAAT-GCTCGACCTATAGC
* * * *
33008886 GGCGTTTTTTAAAAAGTGCCGCTAATGCTCTATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGC
* * * *
33008926 AGCGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATAAC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGC
*
33008966 GGTGTTTTT
1 GGCGTTTTT
33008975 TGTCCATACG
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGC
Found at i:33009350 original size:14 final size:14
Alignment explanation
Indices: 33009331--33009366 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
33009321 GTAATCGGTA
33009331 AAATTTTCTTAATG
1 AAATTTTCTTAATG
33009345 AAATTTTCTTAATG
1 AAATTTTCTTAATG
33009359 AAATTTTC
1 AAATTTTC
33009367 ATACATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (14 bp):
AAATTTTCTTAATG
Found at i:33012361 original size:42 final size:42
Alignment explanation
Indices: 33012302--33012485 Score: 157
Period size: 41 Copynumber: 4.5 Consensus size: 42
33012292 AATACTCGAT
* *
33012302 ATCTCGCACACTAAGTGCCAAAATATAGCTGAAGCTATTATA
1 ATCTCGCACACTAAGTGCCAATATATAGCTGAAGCTATTCTA
* ** *
33012344 ATCTCGCACACTAAGTG-CATTCCATAGCCGAAGCT-TTCTCA
1 ATCTCGCACACTAAGTGCCAATATATAGCTGAAGCTATTCT-A
* * * *
33012385 ACCTTGCACACTAAGTGCC-ATATATAGCTAAAGCTATTCCA
1 ATCTCGCACACTAAGTGCCAATATATAGCTGAAGCTATTCTA
** * * *
33012426 AT-TCGCACACTAAGTG-CTTTATATATCCGAAGCTATCTCGA
1 ATCTCGCACACTAAGTGCCAATATATAGCTGAAGCTAT-TCTA
*
33012467 A--ACGCACACTAAGTGCCAA
1 ATCTCGCACACTAAGTGCCAA
33012486 ACATAGTTGA
Statistics
Matches: 112, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
39 1 0.01
40 43 0.38
41 47 0.42
42 21 0.19
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (42 bp):
ATCTCGCACACTAAGTGCCAATATATAGCTGAAGCTATTCTA
Found at i:33012412 original size:41 final size:41
Alignment explanation
Indices: 33012307--33012484 Score: 140
Period size: 40 Copynumber: 4.4 Consensus size: 41
33012297 TCGATATCTC
* * * *
33012307 GCACACTAAGTGCCAAAATATAGCTGAAGCTATTAT-AATCTC
1 GCACACTAAGTGCC-ATATATAGCCGAAGCTATTCTCAA-CTT
33012349 GCACACTAAGTG-CAT-TCCATAGCCGAAGCT-TTCTCAACCTT
1 GCACACTAAGTGCCATAT--ATAGCCGAAGCTATTCTCAA-CTT
**
33012390 GCACACTAAGTGCCATATATAGCTAAAGCTATTC-CAA-TT
1 GCACACTAAGTGCCATATATAGCCGAAGCTATTCTCAACTT
** *
33012429 CGCACACTAAGTGCTTTATATATCCGAAGCTA-TCTCGAAAC--
1 -GCACACTAAGTGCCATATATAGCCGAAGCTATTCTC--AACTT
33012470 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
33012485 AACATAGTTG
Statistics
Matches: 111, Mismatches: 14, Indels: 24
0.74 0.09 0.16
Matches are distributed among these distances:
39 5 0.05
40 44 0.40
41 41 0.37
42 20 0.18
43 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (41 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATTCTCAACTT
Found at i:33012456 original size:81 final size:81
Alignment explanation
Indices: 33012306--33012491 Score: 232
Period size: 81 Copynumber: 2.3 Consensus size: 81
33012296 CTCGATATCT
* * *
33012306 CGCACACTAAGTGCCAAAATATAGCTGAAGCTATTATAATCTCGCACACTAAGTGCATTCCATAG
1 CGCACACTAAGTGCC-AAATATAGCTAAAGCTATTACAATCTCGCACACTAAGTGCATTACATAG
* *
33012371 CCGAAGCTTTCTC-AAC
65 CCGAAGCTATCTCGAAA
* * * *
33012387 CTTGCACACTAAGTGCCATATATAGCTAAAGCTATTCCAAT-TCGCACACTAAGTGCTTTATATA
1 C--GCACACTAAGTGCCAAATATAGCTAAAGCTATTACAATCTCGCACACTAAGTGCATTACATA
*
33012451 TCCGAAGCTATCTCGAAA
64 GCCGAAGCTATCTCGAAA
*
33012469 CGCACACTAAGTGCCAAACATAG
1 CGCACACTAAGTGCCAAATATAG
33012492 TTGATTTATC
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
80 20 0.22
81 33 0.37
82 23 0.26
83 14 0.16
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (81 bp):
CGCACACTAAGTGCCAAATATAGCTAAAGCTATTACAATCTCGCACACTAAGTGCATTACATAGC
CGAAGCTATCTCGAAA
Found at i:33017464 original size:13 final size:15
Alignment explanation
Indices: 33017446--33017477 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
33017436 TTTATTCATC
33017446 AATCTCTT-CCTC-G
1 AATCTCTTGCCTCTG
33017459 AATCTCTTGCCTCTG
1 AATCTCTTGCCTCTG
33017474 AATC
1 AATC
33017478 AGCCTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (15 bp):
AATCTCTTGCCTCTG
Found at i:33019816 original size:40 final size:40
Alignment explanation
Indices: 33019702--33019839 Score: 147
Period size: 40 Copynumber: 3.4 Consensus size: 40
33019692 TCATACCGAA
*
33019702 CGCACACTAAGTGCCTTT-CATAGCCGAAGCT-TTCTCAACCT
1 CGCACACTAAGTGCCTTTATATAGCCGAAGCTATTC-CAA--T
* *
33019743 CGCACACTAAGTGCCATATATATAGCTGAAGCTATTCCAATT
1 CGCACACTAAGTGCC-TTTATATAGCCGAAGCTATTCCAA-T
* * *
33019785 CGCACACTAAATG-CTTTATATAGCCGAAGCTATCTCGAAA
1 CGCACACTAAGTGCCTTTATATAGCCGAAGCTAT-TCCAAT
33019825 CGCACACTAAGTGCC
1 CGCACACTAAGTGCC
33019840 AAATATAGTC
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
40 29 0.35
41 21 0.26
42 15 0.18
43 14 0.17
44 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25
Consensus pattern (40 bp):
CGCACACTAAGTGCCTTTATATAGCCGAAGCTATTCCAAT
Found at i:33031456 original size:14 final size:15
Alignment explanation
Indices: 33031428--33031461 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
33031418 TAATTGAAGA
33031428 ATTTTTAGATATCAT
1 ATTTTTAGATATCAT
*
33031443 ATTTTTATAT-TCAT
1 ATTTTTAGATATCAT
33031457 ATTTT
1 ATTTT
33031462 AACATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (15 bp):
ATTTTTAGATATCAT
Found at i:33031565 original size:23 final size:23
Alignment explanation
Indices: 33031538--33031582 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
33031528 TGTTCAATTT
33031538 TGATTTGAATTTAAAATATTTTC
1 TGATTTGAATTTAAAATATTTTC
*
33031561 TGATTTGAATTTAAATTATTTT
1 TGATTTGAATTTAAAATATTTT
33031583 TAGAGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (23 bp):
TGATTTGAATTTAAAATATTTTC
Found at i:33034760 original size:129 final size:129
Alignment explanation
Indices: 33034530--33034787 Score: 507
Period size: 129 Copynumber: 2.0 Consensus size: 129
33034520 ATGGCTAGCT
33034530 GATCCCTACTATAGAAGTGACTATAGGCTGCCCTTTATTTGTGCAGCTAGATATATGGGAGTATG
1 GATCCCTACTATAGAAGTGACTATAGGCTGCCCTTTATTTGTGCAGCTAGATATATGGGAGTATG
33034595 TCAGATCCATGACTATCCTATAGTATATATGATTAAAATGTAGATTCCTTCATCTAATTCAGCA
66 TCAGATCCATGACTATCCTATAGTATATATGATTAAAATGTAGATTCCTTCATCTAATTCAGCA
*
33034659 GATCCCTACTATAGAAGTGACTATAGGCTGCCCTTTATTTGTGCAGTTAGATATATGGGAGTATG
1 GATCCCTACTATAGAAGTGACTATAGGCTGCCCTTTATTTGTGCAGCTAGATATATGGGAGTATG
33034724 TCAGATCCATGACTATCCTATAGTATATATGATTAAAATGTAGATTCCTTCATCTAATTCAGCA
66 TCAGATCCATGACTATCCTATAGTATATATGATTAAAATGTAGATTCCTTCATCTAATTCAGCA
33034788 CCGGCTGAAG
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 128 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (129 bp):
GATCCCTACTATAGAAGTGACTATAGGCTGCCCTTTATTTGTGCAGCTAGATATATGGGAGTATG
TCAGATCCATGACTATCCTATAGTATATATGATTAAAATGTAGATTCCTTCATCTAATTCAGCA
Found at i:33047254 original size:10 final size:11
Alignment explanation
Indices: 33047226--33047251 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33047216 TGCTTTTATT
33047226 AAAAATTAGAA
1 AAAAATTAGAA
33047237 AAAAATTAGAA
1 AAAAATTAGAA
33047248 AAAA
1 AAAA
33047252 TTAAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAATTAGAA
Found at i:33047322 original size:10 final size:10
Alignment explanation
Indices: 33047301--33047345 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
33047291 TAAAAAAATT
33047301 AATTATTAAA
1 AATTATTAAA
33047311 AATTTATTAAA
1 AA-TTATTAAA
*
33047322 AATTATAAAA
1 AATTATTAAA
*
33047332 AAATATATAAA
1 AATTAT-TAAA
33047343 AAT
1 AAT
33047346 CGTAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 14 0.48
11 15 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AATTATTAAA
Found at i:33047332 original size:20 final size:20
Alignment explanation
Indices: 33047301--33047371 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
33047291 TAAAAAAATT
*
33047301 AATTATTAAAAATTTATTAAA
1 AATTA-TAAAAATATATTAAA
*
33047322 AATTATAAAAAAATATATAAA
1 AATTATAAAAATATAT-TAAA
** *
33047343 AATCGTAAAAA-ATATAAAA
1 AATTATAAAAATATATTAAA
*
33047362 AATTGTAAAA
1 AATTATAAAA
33047372 TTTTATAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 12 0.28
20 13 0.30
21 18 0.42
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (20 bp):
AATTATAAAAATATATTAAA
Found at i:33047902 original size:88 final size:88
Alignment explanation
Indices: 33047732--33047928 Score: 213
Period size: 88 Copynumber: 2.2 Consensus size: 88
33047722 AATGAGAGCA
* * ** *
33047732 AGGGCTTAATTGTTTTTTTGAAAAATTTGGAGGGTCTTTTTGATGTATTTTGAAATTTCAAGTAC
1 AGGGCTTAATTGTTTTTTTGAAAAATTTGGAGGGCCTTTTGGATACATTTTGAAAGTTCAAGTAC
* * * *
33047797 CCAATTGTGTGGGAAAAAAACA-G
66 CCAATGGAGT-GCAAAAAAAAAGG
33047820 -GGGCTTAATTGATTTTTTT-AAAGAAGTTT-GAGGGCCTTTTGGATACATTTTGAAAGTTCAAG
1 AGGGCTTAATTG-TTTTTTTGAAA-AA-TTTGGAGGGCCTTTTGGATACATTTTGAAAGTTCAAG
* *
33047882 TGCTCAATGGAGTGCAAAAAAAAAGG
63 TACCCAATGGAGTGCAAAAAAAAAGG
33047908 AGGGCTTAATTGCTTCTTTTT
1 AGGGCTTAATTG-TT-TTTTT
33047929 TGTAAAAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
87 23 0.25
88 47 0.52
89 16 0.18
90 5 0.05
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (88 bp):
AGGGCTTAATTGTTTTTTTGAAAAATTTGGAGGGCCTTTTGGATACATTTTGAAAGTTCAAGTAC
CCAATGGAGTGCAAAAAAAAAGG
Found at i:33049532 original size:26 final size:26
Alignment explanation
Indices: 33049468--33049532 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
33049458 ATCATTCTTC
*
33049468 ATATATTTGAAAACTTATTTTAAAAA
1 ATATTTTTGAAAACTTATTTTAAAAA
* * *
33049494 ATATTTATGAAAACTTTTTTTAAAGA
1 ATATTTTTGAAAACTTATTTTAAAAA
*
33049520 ATATTTTTTAAAA
1 ATATTTTTGAAAA
33049533 TAATCAGTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (26 bp):
ATATTTTTGAAAACTTATTTTAAAAA
Found at i:33052047 original size:20 final size:21
Alignment explanation
Indices: 33052018--33052056 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
33052008 CATATGACCA
*
33052018 AGTTGTCTTCG-CTCCAAACG
1 AGTTGACTTCGACTCCAAACG
33052038 AGTTGACTTCGACTCCAAA
1 AGTTGACTTCGACTCCAAA
33052057 ACAGACGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (21 bp):
AGTTGACTTCGACTCCAAACG
Found at i:33056293 original size:64 final size:64
Alignment explanation
Indices: 33056214--33056351 Score: 240
Period size: 64 Copynumber: 2.2 Consensus size: 64
33056204 ACAAAGCAAA
* *
33056214 GGCAATAACATACGGGAAAATATCATGACCAAGTCAGTACATTGGGCATTAGTTTATAAGGAAC
1 GGCAATAACATACGGGAAAATATCACGACCAAGTCAGTAAATTGGGCATTAGTTTATAAGGAAC
*
33056278 GGCAATAACATACGGGAAAATATCACGACCAAGTCAGTAAATTGGGCATTTGTTTATAAGGAAC
1 GGCAATAACATACGGGAAAATATCACGACCAAGTCAGTAAATTGGGCATTAGTTTATAAGGAAC
*
33056342 GCCAATAACA
1 GGCAATAACA
33056352 GTATTTTCTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 70 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (64 bp):
GGCAATAACATACGGGAAAATATCACGACCAAGTCAGTAAATTGGGCATTAGTTTATAAGGAAC
Found at i:33061075 original size:42 final size:42
Alignment explanation
Indices: 33061014--33061140 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
33061004 CTTCGTTTTC
* *
33061014 TCGATGCCATAGCTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
*
33061057 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
* *
33061098 TCGATGCCATAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
33061139 TC
1 TC
33061141 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:33061166 original size:46 final size:47
Alignment explanation
Indices: 33061099--33061218 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 47
33061089 ATTCATATAT
* * * * *
33061099 CGATGCCATAGCCTAGCTATGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * *
33061145 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* *
33061192 CGATGCCACATCCCATATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
33061219 TACGGAAATT
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
46 25 0.41
47 36 0.59
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:33061283 original size:31 final size:31
Alignment explanation
Indices: 33061240--33061326 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
33061230 CTTGTCACTT
* *
33061240 GTAGCCGAAGCTAGCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
33061271 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
33061302 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
33061327 TGTCATTTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:33061407 original size:50 final size:50
Alignment explanation
Indices: 33061302--33061478 Score: 275
Period size: 50 Copynumber: 3.5 Consensus size: 50
33061292 CACTGATCAG
* * * * *
33061302 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCCCTGATCAGATAGGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
33061353 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
33061403 GTAGCCGAAGCTA-CTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATC-ACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
33061453 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
33061479 GTTGTCATGG
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
49 1 0.01
50 92 0.79
51 24 0.21
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:33065307 original size:26 final size:26
Alignment explanation
Indices: 33065278--33065329 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33065268 GTATAAAACG
*
33065278 ATTTAAAAATAGATTATATATATAAA
1 ATTTAAAAATAGATAATATATATAAA
*
33065304 ATTTTAAAATAGATAATATATATAAA
1 ATTTAAAAATAGATAATATATATAAA
33065330 TATAAAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (26 bp):
ATTTAAAAATAGATAATATATATAAA
Found at i:33065335 original size:24 final size:26
Alignment explanation
Indices: 33065283--33065336 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
33065273 AAACGATTTA
* *
33065283 AAAATAGATTATATATATAAAATTTT
1 AAAATAGATAATATATATAAAATTAT
33065309 AAAATAGATAATATATAT-AAA-TAT
1 AAAATAGATAATATATATAAAATTAT
33065333 AAAA
1 AAAA
33065337 GTGTAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 6 0.23
25 3 0.12
26 17 0.65
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (26 bp):
AAAATAGATAATATATATAAAATTAT
Found at i:33065336 original size:32 final size:32
Alignment explanation
Indices: 33065292--33065355 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
33065282 AAAAATAGAT
* * * *
33065292 TATATATATAAAATTTTAAAATAGATAATATA
1 TATAAATATAAAAGTGTAAAATAAATAATATA
*
33065324 TATAAATATAAAAGTGTAAAATAAATATTATA
1 TATAAATATAAAAGTGTAAAATAAATAATATA
33065356 AAGAATATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.38
Consensus pattern (32 bp):
TATAAATATAAAAGTGTAAAATAAATAATATA
Found at i:33065371 original size:24 final size:25
Alignment explanation
Indices: 33065340--33065398 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
33065330 TATAAAAGTG
* *
33065340 TAAAATAAAT-ATTAT-AAAGAATAT
1 TAAAATAAATAATAATAAAAAAAT-T
33065364 TAAAATAAATAATAATAAAAAAATT
1 TAAAATAAATAATAATAAAAAAATT
33065389 TAAAATAAAT
1 TAAAATAAAT
33065399 GAAAAGAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 10 0.32
25 15 0.48
26 6 0.19
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (25 bp):
TAAAATAAATAATAATAAAAAAATT
Found at i:33065436 original size:24 final size:24
Alignment explanation
Indices: 33065407--33065462 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
33065397 ATGAAAAGAG
*
33065407 TTTAAAATAAGGCATATGAAAT-AA
1 TTTAAAATAAGGAATAT-AAATCAA
*
33065431 TTTAAAATAAGTAATATAAATCAA
1 TTTAAAATAAGGAATATAAATCAA
33065455 TTTAAAAT
1 TTTAAAAT
33065463 TTATATACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (24 bp):
TTTAAAATAAGGAATATAAATCAA
Found at i:33070240 original size:18 final size:18
Alignment explanation
Indices: 33070217--33070278 Score: 115
Period size: 18 Copynumber: 3.4 Consensus size: 18
33070207 TCAGTATTTT
33070217 GACCCACATGCTCATGTG
1 GACCCACATGCTCATGTG
33070235 GACCCACATGCTCATGTG
1 GACCCACATGCTCATGTG
33070253 GACCCACATGCTCATGTG
1 GACCCACATGCTCATGTG
*
33070271 GATCCACA
1 GACCCACA
33070279 CGGCCTAGCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (18 bp):
GACCCACATGCTCATGTG
Found at i:33072911 original size:8 final size:8
Alignment explanation
Indices: 33072898--33072922 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33072888 TTTACTGTTC
33072898 AATAAAAT
1 AATAAAAT
33072906 AATAAAAT
1 AATAAAAT
33072914 AATAAAAT
1 AATAAAAT
33072922 A
1 A
33072923 TTTTTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:33096344 original size:28 final size:28
Alignment explanation
Indices: 33096304--33096360 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
33096294 ACATTATCTA
*
33096304 AGTTAACAGAAAACTATGAAACCAAGGT
1 AGTTAAAAGAAAACTATGAAACCAAGGT
33096332 AGTTAAAAGAAAACTATGAAACCAAGGT
1 AGTTAAAAGAAAACTATGAAACCAAGGT
33096360 A
1 A
33096361 AACACATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (28 bp):
AGTTAAAAGAAAACTATGAAACCAAGGT
Found at i:33098353 original size:18 final size:17
Alignment explanation
Indices: 33098324--33098357 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
33098314 TATACTTATA
33098324 TTAATTATTAATTAAAC
1 TTAATTATTAATTAAAC
33098341 TTAATTAATTAATTAAA
1 TTAATT-ATTAATTAAA
33098358 ATTTTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAATTATTAATTAAAC
Found at i:33100113 original size:44 final size:44
Alignment explanation
Indices: 33100050--33100137 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
33100040 ATTTCGAAAG
*
33100050 TAAGCAACTAAGAACAATAATCACAACATTTATATTTTTAGTCA
1 TAAGCAACTAAAAACAATAATCACAACATTTATATTTTTAGTCA
33100094 TAAGCAACTAAAAACAATAATCACAACATTTATATTTTTAGTCA
1 TAAGCAACTAAAAACAATAATCACAACATTTATATTTTTAGTCA
33100138 ATTTTATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.47, C:0.16, G:0.06, T:0.32
Consensus pattern (44 bp):
TAAGCAACTAAAAACAATAATCACAACATTTATATTTTTAGTCA
Found at i:33103672 original size:6 final size:6
Alignment explanation
Indices: 33103643--33103694 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
33103633 AGAGGAGACG
* * *
33103643 GATTTA GATTTA GATCTTT GGATTTT GATTCT GATTTT GATTTT GATTTT
1 GATTTT GATTTT GAT-TTT -GATTTT GATTTT GATTTT GATTTT GATTTT
33103693 GA
1 GA
33103695 AATTGGAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
6 33 0.80
7 5 0.12
8 3 0.07
ACGTcount: A:0.21, C:0.04, G:0.19, T:0.56
Consensus pattern (6 bp):
GATTTT
Found at i:33106018 original size:206 final size:206
Alignment explanation
Indices: 33105664--33106073 Score: 775
Period size: 206 Copynumber: 2.0 Consensus size: 206
33105654 ACTTATGAAT
33105664 ACTATGAACACTGCATATTTGTTCGAGATAAATTTACTGGCTGCTATGGCATCAACAAACGAACA
1 ACTATGAACACTGCATATTTGTTCGAGATAAATTTACTGGCTGCTATGGCATCAACAAACGAACA
33105729 AGAGATAAGTATATCAGGTAAATCCTATGTGGAAGAATGTGTGGAGATTAAAGCTTCCTTTTCAA
66 AGAGATAAGTATATCAGGTAAATCCTATGTGGAAGAATGTGTGGAGATTAAAGCTTCCTTTTCAA
*
33105794 CTAATCATCATTCTATGGAAAGTGTGTACCGACAATCTACCAGTAGATCAGACTTTACGAGGAGA
131 CTAATCATCATTCTATGGAAAGTGTGTACCAACAATCTACCAGTAGATCAGACTTTACGAGGAGA
33105859 AACACAAATGC
196 AACACAAATGC
*
33105870 ACTATGAACACTGCATATTTGTTCGAGATAAATTTACTGGCTGCTATGGCATCAACAGACGAACA
1 ACTATGAACACTGCATATTTGTTCGAGATAAATTTACTGGCTGCTATGGCATCAACAAACGAACA
* *
33105935 AGAGATAAGTGTATCAGGTAAATCCTATGTGGAAGAATGTGTGGAGATTAAAGCTTCTTTTTCAA
66 AGAGATAAGTATATCAGGTAAATCCTATGTGGAAGAATGTGTGGAGATTAAAGCTTCCTTTTCAA
*
33106000 CTAATCATCATTCTATGGAAAGTGTGTACCAACAATCTACTAGTAGATCAGACTTTACGAGGAGA
131 CTAATCATCATTCTATGGAAAGTGTGTACCAACAATCTACCAGTAGATCAGACTTTACGAGGAGA
33106065 AACACAAAT
196 AACACAAAT
33106074 ACTTCAGGTG
Statistics
Matches: 199, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
206 199 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (206 bp):
ACTATGAACACTGCATATTTGTTCGAGATAAATTTACTGGCTGCTATGGCATCAACAAACGAACA
AGAGATAAGTATATCAGGTAAATCCTATGTGGAAGAATGTGTGGAGATTAAAGCTTCCTTTTCAA
CTAATCATCATTCTATGGAAAGTGTGTACCAACAATCTACCAGTAGATCAGACTTTACGAGGAGA
AACACAAATGC
Found at i:33108309 original size:17 final size:17
Alignment explanation
Indices: 33108267--33108315 Score: 66
Period size: 16 Copynumber: 3.0 Consensus size: 17
33108257 ATTTTTTTGA
*
33108267 TTTAATCTA-ATTATTT
1 TTTAATATATATTATTT
33108283 TTTAA-ATATATTATTT
1 TTTAATATATATTATTT
*
33108299 TTTAATTTATATTATTT
1 TTTAATATATATTATTT
33108316 GTAATCCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 2 0.07
16 17 0.59
17 10 0.34
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTAATATATATTATTT
Found at i:33108439 original size:15 final size:15
Alignment explanation
Indices: 33108419--33108448 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33108409 AGAACATGAA
33108419 AATTCTCATTAAAGC
1 AATTCTCATTAAAGC
33108434 AATTCTCATTAAAGC
1 AATTCTCATTAAAGC
33108449 TTTGGTCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (15 bp):
AATTCTCATTAAAGC
Found at i:33111900 original size:31 final size:31
Alignment explanation
Indices: 33111859--33111921 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
33111849 TACAATTTGG
* *
33111859 TCACTGAACTATTCAAAAGGTTTCT-TTTAAA
1 TCACTAAACTATTCAAAA-GCTTCTATTTAAA
33111890 TCACTAAACTATTCAAAAGCTTCTATTTAAA
1 TCACTAAACTATTCAAAAGCTTCTATTTAAA
33111921 T
1 T
33111922 AAAGTTCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (31 bp):
TCACTAAACTATTCAAAAGCTTCTATTTAAA
Found at i:33113782 original size:34 final size:34
Alignment explanation
Indices: 33113739--33113806 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
33113729 ACGATTATAA
*
33113739 CGGTAACAAGGCATGAGGCAATCAAGAATCAAAC
1 CGGTAACAAGGCACGAGGCAATCAAGAATCAAAC
33113773 CGGTAACAAGGCACGAGGCAATCAAGAATCAAAC
1 CGGTAACAAGGCACGAGGCAATCAAGAATCAAAC
33113807 TCTTCCAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (34 bp):
CGGTAACAAGGCACGAGGCAATCAAGAATCAAAC
Found at i:33120245 original size:29 final size:29
Alignment explanation
Indices: 33120187--33120275 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 29
33120177 ATCCCAAAAC
*
33120187 TATATATGAACTATTG-TTTAATGTTCAATTG
1 TATACATGAACT-TTGATTTAATG-T-AATTG
* *
33120218 TATACATGAACTTTGATTTTATGTAATTT
1 TATACATGAACTTTGATTTAATGTAATTG
* * *
33120247 TATACATGAAATTTTGATTTGATCTAATT
1 TATACATG-AACTTTGATTTAATGTAATT
33120276 CTTATAAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 12 0.24
30 21 0.42
31 17 0.34
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (29 bp):
TATACATGAACTTTGATTTAATGTAATTG
Found at i:33120265 original size:30 final size:29
Alignment explanation
Indices: 33120213--33120281 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
33120203 TTTAATGTTC
* * *
33120213 AATTGTATACATGAACTTTGATTTTATGT
1 AATTTTATACATGAACTTTGATTTGATCT
*
33120242 AATTTTATACATGAAATTTTGATTTGATCT
1 AATTTTATACATG-AACTTTGATTTGATCT
33120272 AATTCTTATA
1 AATT-TTATA
33120282 AATTATTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 12 0.35
30 17 0.50
31 5 0.15
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.49
Consensus pattern (29 bp):
AATTTTATACATGAACTTTGATTTGATCT
Found at i:33123725 original size:21 final size:21
Alignment explanation
Indices: 33123699--33123742 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
33123689 CCAAATATTC
33123699 AACATTATATTCCATTATAGT
1 AACATTATATTCCATTATAGT
* *
33123720 AACATTATATTTCATTTTAGT
1 AACATTATATTCCATTATAGT
33123741 AA
1 AA
33123743 TATCACTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (21 bp):
AACATTATATTCCATTATAGT
Found at i:33126236 original size:35 final size:35
Alignment explanation
Indices: 33126190--33126260 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
33126180 TCATCAGAAA
*
33126190 AACGCCATGGAGGAGTTCTATTAAGCTGGTTTTTC
1 AACGCCATGGAGGAGTTCTATTAAGCTGATTTTTC
33126225 AACGCCATGGAGGAGTTCTATTAAGCTGATTTTTC
1 AACGCCATGGAGGAGTTCTATTAAGCTGATTTTTC
33126260 A
1 A
33126261 TATTTTTACT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (35 bp):
AACGCCATGGAGGAGTTCTATTAAGCTGATTTTTC
Found at i:33127966 original size:39 final size:39
Alignment explanation
Indices: 33127832--33127970 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
33127822 GCTCTGATGA
*
33127832 GCTTCAGTTAGCC-TCTGGGCTTCCGTTTCGCACTTATGT
1 GCTTCAGTTAGCCTTC-GGGCTTCCGTTTAGCACTTATGT
* *
33127871 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
33127910 GCTTCAGTTAGCCTTCGGGCTGCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* **
33127949 GCTTCAGCTAGATTTCGGGCTT
1 GCTTCAGTTAGCCTTCGGGCTT
33127971 TAGATCACGA
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 88 0.99
40 1 0.01
ACGTcount: A:0.13, C:0.27, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:33128988 original size:13 final size:13
Alignment explanation
Indices: 33128970--33128994 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33128960 CTCAATGGGC
33128970 AATTGGACTTGAA
1 AATTGGACTTGAA
33128983 AATTGGACTTGA
1 AATTGGACTTGA
33128995 GATCATAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (13 bp):
AATTGGACTTGAA
Found at i:33129372 original size:62 final size:59
Alignment explanation
Indices: 33129300--33129413 Score: 149
Period size: 62 Copynumber: 1.9 Consensus size: 59
33129290 AGTGATTATC
* * *
33129300 TTAATATTAAATTTAAT-TTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATAAGAT
1 TTAATATTAAATTTAATCTT-ATATTTA-CCT-TA-ATAAATATTATATTAATTTAATAAGAT
*
33129362 TTAATTTTAAATTTAATCTTATATTTACCTTAATAAATATTATATTAATTTA
1 TTAATATTAAATTTAATCTTATATTTACCTTAATAAATATTATATTAATTTA
33129414 CTATTAAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
59 19 0.40
60 2 0.04
61 2 0.04
62 22 0.47
63 2 0.04
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTTATATTTACCTTAATAAATATTATATTAATTTAATAAGAT
Found at i:33140128 original size:7 final size:6
Alignment explanation
Indices: 33140087--33140124 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
33140077 CTCTATAATT
*
33140087 AATTTA AATTT- AATCTTT AATTTA AATTTA AATTTA AA
1 AATTTA AATTTA AAT-TTA AATTTA AATTTA AATTTA AA
33140125 ATTTTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 3 0.10
6 23 0.79
7 3 0.10
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTTA
Found at i:33140150 original size:13 final size:13
Alignment explanation
Indices: 33140132--33140174 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
33140122 AAAATTTTAA
33140132 AATATTTAGTGAT
1 AATATTTAGTGAT
*
33140145 AATATTTA-AGAT
1 AATATTTAGTGAT
33140157 --TATTTAGTGAT
1 AATATTTAGTGAT
33140168 AATATTT
1 AATATTT
33140175 TTAAAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.49
Consensus pattern (13 bp):
AATATTTAGTGAT
Found at i:33140151 original size:23 final size:23
Alignment explanation
Indices: 33140125--33140180 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
33140115 TAAATTTAAA
33140125 ATTTTAAAATATTTAGTGATAAT
1 ATTTTAAAATATTTAGTGATAAT
*
33140148 A-TTTAAGATTATTTAGTGATAAT
1 ATTTTAA-AATATTTAGTGATAAT
33140171 ATTTTTAAAA
1 A-TTTTAAAA
33140181 AATCTAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 5 0.18
23 17 0.61
24 1 0.04
25 5 0.18
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (23 bp):
ATTTTAAAATATTTAGTGATAAT
Found at i:33140354 original size:16 final size:16
Alignment explanation
Indices: 33140333--33140364 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33140323 TTCTATTTTA
33140333 TTTATTTATTTACTTT
1 TTTATTTATTTACTTT
*
33140349 TTTATTTTTTTACTTT
1 TTTATTTATTTACTTT
33140365 CAACCCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTATTTACTTT
Found at i:33140552 original size:20 final size:18
Alignment explanation
Indices: 33140517--33140570 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
33140507 TTATTTATCT
33140517 ATTTATTTTATTTTTTTAA
1 ATTTATTTT-TTTTTTTAA
*
33140536 ATTTATTTTTTAGTTTTTGA
1 ATTTATTTTTT--TTTTTAA
*
33140556 ATTTGTTTTTATTTT
1 ATTTATTTTT-TTTT
33140571 ATTTTATTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 2 0.07
19 12 0.40
20 15 0.50
21 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
ATTTATTTTTTTTTTTAA
Found at i:33149882 original size:16 final size:18
Alignment explanation
Indices: 33149847--33149884 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
33149837 ATCTTTATTT
33149847 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
33149865 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
33149881 AAAT
1 AAAT
33149885 TCATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:33152076 original size:43 final size:43
Alignment explanation
Indices: 33151928--33152080 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 43
33151918 CATATCTCAA
** * * * *
33151928 ATATGGTCTTACATGTTATCATATATCGATGCCGATAG-CCCAG
1 ATATGGTCTTACACATAATCACATAACGATGCCAAT-GTCCCAG
* * *
33151971 TTATGGTCTTACACGA-AACCAAATAACGATGCCAATGTCCCAG
1 ATATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAG
* * *
33152014 ATATGGTCTTATACGTAATCACATAATGATGCCAATGTCCCAG
1 ATATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAG
*
33152057 ATATGATCTTACACATAATCACAT
1 ATATGGTCTTACACATAATCACAT
33152081 CTCGTTAATC
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (43 bp):
ATATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAG
Found at i:33155477 original size:6 final size:6
Alignment explanation
Indices: 33155459--33155626 Score: 94
Period size: 6 Copynumber: 27.3 Consensus size: 6
33155449 AAGAAACATT
* * * *
33155459 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCCGA ACCAGA AACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
33155507 ATTAGGTG AT-AGA ATCAGA ATCAGA GTCAGT ATCAGGTA A-CCGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
33155557 ATCAGA ATCAGC ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
33155608 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
33155627 GTGAATGCAA
Statistics
Matches: 122, Mismatches: 26, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
5 9 0.07
6 97 0.80
7 11 0.09
8 5 0.04
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:33155560 original size:31 final size:31
Alignment explanation
Indices: 33155517--33155626 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
33155507 ATTAGGTGAT
* *
33155517 AGAATCAGAATCAGAGTCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
33155548 CGAATCAAAATCAGAATCAGCATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
33155579 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
33155610 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
33155627 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:33155822 original size:26 final size:27
Alignment explanation
Indices: 33155758--33155831 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
33155748 GCTCAGTTAT
* *
33155758 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
33155785 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
33155811 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
33155832 TTAACAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 19 0.45
27 23 0.55
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:33156511 original size:26 final size:27
Alignment explanation
Indices: 33156482--33156721 Score: 281
Period size: 27 Copynumber: 8.9 Consensus size: 27
33156472 GGGCAAAATG
* * * *
33156482 GTAATTTTACCCCACA-AGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
33156508 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
33156535 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
33156562 GTAATTCTACCCTACAGGGGTA-TTCT
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
33156588 GATAATTCTACCCTACAGGGGTATTCCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
33156616 GTAATTCTACCCTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-A
* * *
33156643 GTAATTCTACCCTACAGGGATATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
33156670 GTAATTCTACCTTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-A
*
33156697 GTAATTCTACCCTATAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
33156722 TGGTAATTTT
Statistics
Matches: 188, Mismatches: 19, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
26 21 0.11
27 160 0.85
28 7 0.04
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:33156537 original size:27 final size:27
Alignment explanation
Indices: 33156508--33156729 Score: 329
Period size: 27 Copynumber: 8.2 Consensus size: 27
33156498 AGGTATCTCA
* * *
33156508 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTCTG
*
33156535 GTAATTCTACCCTACAGGGGTATT-TCA
1 GTAATTCTACCCTACAGGGGTATTCT-G
33156562 GTAATTCTACCCTACAGGGGTATTCTG
1 GTAATTCTACCCTACAGGGGTATTCTG
* *
33156589 ATAATTCTACCCTACAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTCTG
33156616 GTAATTCTACCCTACAGGGGTATTCTG
1 GTAATTCTACCCTACAGGGGTATTCTG
* *
33156643 GTAATTCTACCCTACAGGGATATTCCG
1 GTAATTCTACCCTACAGGGGTATTCTG
*
33156670 GTAATTCTACCTTACAGGGGTATTCTG
1 GTAATTCTACCCTACAGGGGTATTCTG
* *
33156697 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTCTG
33156724 GTAATT
1 GTAATT
33156730 TTGTAAATCG
Statistics
Matches: 179, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
26 1 0.01
27 177 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTCTG
Found at i:33156574 original size:54 final size:54
Alignment explanation
Indices: 33156480--33156721 Score: 342
Period size: 54 Copynumber: 4.5 Consensus size: 54
33156470 AGGGGCAAAA
* * * * * *
33156480 TGGTAATTTTACCCCACA-AGGTATCTCAGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTC
*
33156533 TAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTC
* * *
33156587 TGATAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTC
* * * *
33156641 TGGTAATTCTACCCTACAGGGATATTCCGGTAATTCTACCTTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTC
*
33156695 TGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
33156722 TGGTAATTTT
Statistics
Matches: 171, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 15 0.09
54 156 0.91
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTC
Found at i:33156744 original size:27 final size:27
Alignment explanation
Indices: 33156714--33156997 Score: 148
Period size: 27 Copynumber: 10.5 Consensus size: 27
33156704 TACCCTATAG
*
33156714 GGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
***
33156741 GGGTAAAATGGTAATTTTATAAATC-A
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
33156767 GGGGTACTTTGGTAATTCTACAAGTCGA
1 -GGGTATTTTGGTAATTTTATAAATCGA
*** * ** *
33156795 GGGTATTTCAATAATTTTACAGGTCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
** * * *
33156822 GGGTATTTCAGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * * *
33156849 GGATATTTTGGTACTTTTA-CAAGCTA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
33156875 GGGCTATTTTGATGATTTTACAAA-CCA
1 GGG-TATTTTGGTAATTTTATAAATCGA
*
33156902 GGGGTATTTTGGTAATTTTACAAATC-A
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
33156929 GGGGTATTTTGGTGATTTTATAAA-CTAA
1 -GGGTATTTTGGTAATTTTATAAATC-GA
* * * *
33156957 GGGTATTCTAGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTATAAATCGA
33156983 GTGGTATTTTGGTAA
1 G-GGTATTTTGGTAA
33156998 ACTAAAGTAT
Statistics
Matches: 202, Mismatches: 46, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
26 10 0.05
27 184 0.91
28 8 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:33156937 original size:54 final size:54
Alignment explanation
Indices: 33156712--33156993 Score: 190
Period size: 54 Copynumber: 5.2 Consensus size: 54
33156702 TCTACCCTAT
* ** * * *** *
33156712 AGGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTATAAATC
1 AGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * * ** * *** **
33156766 AGGGGTACTTTGGTAATTCTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC
1 AGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * * * * * *
33156820 AAGGGTA-TTTCAGTAATTTCACAAATCAAGGATATTTTGGTACTTTTAC-AAGC
1 AGGGGTATTTTGA-TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * *
33156873 TAGGGCTATTTTGATGATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATC
1 -AGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * * * * * *
33156928 AGGGGTATTTTGGTGATTTTATAAACTAAGGGTATTCTAGTAATTTTACAAACC
1 AGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
*
33156982 AGTGGTATTTTG
1 AGGGGTATTTTG
33156994 GTAAACTAAA
Statistics
Matches: 176, Mismatches: 48, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
53 4 0.02
54 165 0.94
55 7 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
Found at i:33156948 original size:81 final size:78
Alignment explanation
Indices: 33156749--33156997 Score: 246
Period size: 81 Copynumber: 3.1 Consensus size: 78
33156739 GAGGGTAAAA
* * * * *
33156749 TGGTAATTTTATAAATCAGGGGTACTTTGGTAATTCTACAAGTCGAGGGTATTTCAATAATTTTA
1 TGGTAATTTTACAAATCAGGGGTATTTTGGT-ATTTTACAAG-CTAGGGTATTT-TATAATTTTA
*** *
33156814 CAGGTCAAGGGTATTT
63 CAAACCAGGGGTATTT
** * * * *
33156830 CAGTAATTTCACAAATCAAGGATATTTTGGTACTTTTACAAGCTAGGGCTATTTTGATGATTTTA
1 TGGTAATTTTACAAATCAGGGGTATTTTGGTA-TTTTACAAGCTAGGG-TATTTT-ATAATTTTA
33156895 CAAACCAGGGGTATTT
63 CAAACCAGGGGTATTT
* * *
33156911 TGGTAATTTTACAAATCAGGGGTATTTTGGTGATTTTATAAACTAAGGGTATTCTAGTAATTTTA
1 TGGTAATTTTACAAATCAGGGGTATTTTGGT-ATTTTACAAGCT-AGGGTATTTTA-TAATTTTA
*
33156976 CAAACCAGTGGTATTT
63 CAAACCAGGGGTATTT
33156992 TGGTAA
1 TGGTAA
33156998 ACTAAAGTAT
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
80 7 0.05
81 125 0.91
82 5 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (78 bp):
TGGTAATTTTACAAATCAGGGGTATTTTGGTATTTTACAAGCTAGGGTATTTTATAATTTTACAA
ACCAGGGGTATTT
Found at i:33158959 original size:6 final size:6
Alignment explanation
Indices: 33158941--33159108 Score: 112
Period size: 6 Copynumber: 27.3 Consensus size: 6
33158931 AAGAAACATT
* *
33158941 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
33158989 ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA A-CCGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
33159039 ATCAGA ATCAGC ATCAGGTA AT-AGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
33159090 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
33159109 GTGAATGCAA
Statistics
Matches: 124, Mismatches: 24, Indels: 28
0.70 0.14 0.16
Matches are distributed among these distances:
5 9 0.07
6 100 0.81
7 10 0.08
8 5 0.04
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:33159014 original size:31 final size:31
Alignment explanation
Indices: 33158968--33159108 Score: 192
Period size: 31 Copynumber: 4.5 Consensus size: 31
33158958 AATCAGAATT
* * * * *
33158968 AGAATCAGAACCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
33158999 AGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* * *
33159030 CGAATCAAAATCAGAATCAGCATCAGGTAAT
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
33159061 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
33159092 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
33159109 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 97 1.00
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:33159304 original size:26 final size:27
Alignment explanation
Indices: 33159240--33159313 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
33159230 GCTCAGTTAT
* *
33159240 CAGATATTGTGACAGAGTCACCAGAAA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
33159267 TAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* *
33159293 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
33159314 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 20 0.49
27 21 0.51
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:33159500 original size:22 final size:22
Alignment explanation
Indices: 33159472--33159536 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
33159462 GTAAATACGT
*
33159472 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
33159494 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
33159516 TTAACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
33159537 AAAGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:33160020 original size:27 final size:27
Alignment explanation
Indices: 33159963--33160243 Score: 350
Period size: 27 Copynumber: 10.4 Consensus size: 27
33159953 GGGGCAAAAT
* * *
33159963 GGTAATTTTACCCCACA-AGGTA-TCTC
1 GGTAATTCTACCCTACAGGGGTATTC-C
**
33159989 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTCC
* * *
33160016 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
33160043 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
33160070 GGTATTTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
33160097 GGTAATTCTACCCTACAGGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTCC
33160124 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
33160151 GGTAATTCTACCCTACAGGGATATTCT
1 GGTAATTCTACCCTACAGGGGTATTCC
* * * *
33160178 GGTAATTCTACCTTATAGGGGAATTCT
1 GGTAATTCTACCCTACAGGGGTATTCC
* * *
33160205 AGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
33160232 GGTAATTCTACC
1 GGTAATTCTACC
33160244 TTTTAGGGGT
Statistics
Matches: 222, Mismatches: 31, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
26 15 0.07
27 206 0.93
28 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTCC
Found at i:33160080 original size:81 final size:81
Alignment explanation
Indices: 33159988--33160243 Score: 388
Period size: 81 Copynumber: 3.2 Consensus size: 81
33159978 CAAGGTATCT
* *
33159988 CGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCTTACAGGGGTATT-TCAGTAATTCT
1 CGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCTTACAGGGGTATTCT-AGTAATTCT
33160052 ACCCTACAGGGGTATTC
65 ACCCTACAGGGGTATTC
* * * * *
33160069 CGGTATTTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCTTACAGGGGTATTCTAGTAATTCTA
33160134 CCCTACAGGGGTATTC
66 CCCTACAGGGGTATTC
* * *
33160150 CGGTAATTCTACCCTACAGGGATATTCTGGTAATTCTACCTTATAGGGGAATTCTAGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCTTACAGGGGTATTCTAGTAATTCTA
* *
33160215 CCCTACAGAGGTATTT
66 CCCTACAGGGGTATTC
33160231 CGGTAATTCTACC
1 CGGTAATTCTACC
33160244 TTTTAGGGGT
Statistics
Matches: 157, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
81 156 0.99
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (81 bp):
CGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCTTACAGGGGTATTCTAGTAATTCTA
CCCTACAGGGGTATTC
Found at i:33160333 original size:27 final size:26
Alignment explanation
Indices: 33160285--33160457 Score: 79
Period size: 27 Copynumber: 6.5 Consensus size: 26
33160275 GAGGGTAAAA
** * *
33160285 TGGTAATTCTTTAATTCAAGGGTACTT
1 TGGTAATTCTACAAGTCGAGGGTA-TT
33160312 TGGTAATTCTACAAGTCGAGGGTATT
1 TGGTAATTCTACAAGTCGAGGGTATT
** * *
33160338 TCAATAATTTTACAGGTCGAGGGTATT
1 T-GGTAATTCTACAAGTCGAGGGTATT
* *
33160365 TCAGTAATT-TCACAAATC-AGGGATATTT
1 T-GGTAATTCT-ACAAGTCGAGGG-TA-TT
* *
33160393 TGGTAATTTTACAAG-CTAGGGGTA-T
1 TGGTAATTCTACAAGTCGA-GGGTATT
* * * *
33160418 TGATAATTTTACAA-ACTAGGGGTATTT
1 TGGTAATTCTACAAGTCGA-GGGTA-TT
33160445 TGGTAATT-TACAA
1 TGGTAATTCTACAA
33160458 ACCAGGGGTA
Statistics
Matches: 121, Mismatches: 15, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
25 23 0.19
26 14 0.12
27 77 0.64
28 7 0.06
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGTAATTCTACAAGTCGAGGGTATT
Found at i:33160430 original size:25 final size:25
Alignment explanation
Indices: 33160396--33160469 Score: 96
Period size: 25 Copynumber: 2.9 Consensus size: 25
33160386 GATATTTTGG
*
33160396 TAATTTTACAAGCTAGGGGTATTGA
1 TAATTTTACAAACTAGGGGTATTGA
*
33160421 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTA--TTGA
*
33160448 TAA-TTTACAAACCAGGGGTATT
1 TAATTTTACAAACTAGGGGTATT
33160470 TTGGTGATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
24 2 0.05
25 20 0.45
26 16 0.36
27 6 0.14
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.36
Consensus pattern (25 bp):
TAATTTTACAAACTAGGGGTATTGA
Found at i:33160446 original size:52 final size:53
Alignment explanation
Indices: 33160358--33160524 Score: 169
Period size: 53 Copynumber: 3.2 Consensus size: 53
33160348 TACAGGTCGA
* * * * *
33160358 GGGTATTTCAGTAATTTCACAAA-TCAGGGATATTTTGGTAATTTTACAAGCTAG
1 GGGTATTTGA-TAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAG
33160412 GGGTA-TTGATAATTTTACAAACTAGGGGTATTTTGGTAA-TTTACAAACCAG
1 GGGTATTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
* * * * * * *
33160463 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTCGTAATTTTACAAACCAG
1 GGGTA-TTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
*
33160517 TGGTATTT
1 GGGTATTT
33160525 TGGTAAACTA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
51 15 0.16
52 26 0.27
53 34 0.35
54 21 0.22
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (53 bp):
GGGTATTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
Found at i:33160530 original size:27 final size:27
Alignment explanation
Indices: 33160358--33160530 Score: 190
Period size: 27 Copynumber: 6.5 Consensus size: 27
33160348 TACAGGTCGA
** * *
33160358 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
33160385 GGATATTTTGGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
33160412 GGGTA--TTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
33160437 GGGTATTTTGGTAA-TTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
33160463 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
33160490 GGGTATTCTCGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
33160517 TGGTATTTTGGTAA
1 GGGTATTTTGGTAA
33160531 ACTAAAGTAT
Statistics
Matches: 120, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
25 23 0.19
26 24 0.20
27 73 0.61
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:33172453 original size:25 final size:24
Alignment explanation
Indices: 33172425--33172486 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 24
33172415 ATTATCAGGC
33172425 TGCTAACACTAGCTTCGGATT-AGGT
1 TGCTAACACTAGCTT-GG-TTAAGGT
*
33172450 TGCTAACACTAGCTTGGTTCAATGT
1 TGCTAACACTAGCTTGGTT-AAGGT
33172475 TGCTAACACTAG
1 TGCTAACACTAG
33172487 TTTTAGAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 30 0.88
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (24 bp):
TGCTAACACTAGCTTGGTTAAGGT
Found at i:33173538 original size:5 final size:5
Alignment explanation
Indices: 33173528--33173555 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
33173518 TTTATTCATT
33173528 TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT
33173556 ATAAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:33174361 original size:39 final size:40
Alignment explanation
Indices: 33174307--33174388 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
33174297 CACCTTGAGA
*
33174307 ATTCAGTACCCATTTGAAG-AAAACCATGAAAAGGAAAAG
1 ATTCAATACCCATTTGAAGAAAAACCATGAAAAGGAAAAG
* *
33174346 ATTCAATATCCATTTGAAGAAAAACCATGAAAAGGATAAG
1 ATTCAATACCCATTTGAAGAAAAACCATGAAAAGGAAAAG
33174386 ATT
1 ATT
33174389 TGGAAAGGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (40 bp):
ATTCAATACCCATTTGAAGAAAAACCATGAAAAGGAAAAG
Found at i:33177032 original size:159 final size:159
Alignment explanation
Indices: 33176259--33177030 Score: 1327
Period size: 159 Copynumber: 4.9 Consensus size: 159
33176249 TTTTTCCGTC
* * * * *
33176259 TTTTGGGAAAACGGCAACGTTTTATAGTATATT-T-AATACAGAATTCAAAGTAAGA-AGTCAAC
1 TTTTGGGAGAACGGCAACGTTTTATATTAT-TTATAAAAACAGAACTCAGAGTAAGATA-TCAAC
33176321 GGCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTG
64 GGCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTG
33176386 CATGGGCCAGTGAAAGCAACTTCCTCTAATT
129 CATGGGCCAGTGAAAGCAACTTCCTCTAATT
33176417 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
1 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
33176482 CCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
66 CCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
33176547 TGGGCCAGTGAAAGCAACTTCCTCTAATT
131 TGGGCCAGTGAAAGCAACTTCCTCTAATT
33176576 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
1 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
*
33176641 CCTATTGGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
66 CCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
33176706 TGGGCCAGTGAAAGCAACTTCCTCTAATT
131 TGGGCCAGTGAAAGCAACTTCCTCTAATT
33176735 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
1 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
33176800 CCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
66 CCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
* *
33176865 TGGGCCACTAAAAGCAACTTCCTCTAATT
131 TGGGCCAGTGAAAGCAACTTCCTCTAATT
* * * * * ** *
33176894 TTTTGGGAAAACGGCAACGTTTTATATTATCTATTAAAATAGAATTTTGAGTAAGA-ATTCAATG
1 TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATA-TCAACG
* *
33176958 GCCTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACTTGC
65 GCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGC
33177023 ATGGGCCA
130 ATGGGCCA
33177031 CTTAAGATAT
Statistics
Matches: 591, Mismatches: 19, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
157 2 0.00
158 30 0.05
159 558 0.94
160 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (159 bp):
TTTTGGGAGAACGGCAACGTTTTATATTATTTATAAAAACAGAACTCAGAGTAAGATATCAACGG
CCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA
TGGGCCAGTGAAAGCAACTTCCTCTAATT
Found at i:33177755 original size:43 final size:43
Alignment explanation
Indices: 33177694--33177779 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
33177684 ACGGTATTTG
** *
33177694 ATCGGCAAACCTTGATAAGGATGTCAGCCAGGCATTGTAAAAA
1 ATCGGCAAACCTTGATAAGGAAATCAGCCAGGCATTATAAAAA
33177737 ATCGGCAAACCTTGATAAGGAAATCAGCCAGGCATTATAAAAA
1 ATCGGCAAACCTTGATAAGGAAATCAGCCAGGCATTATAAAAA
33177780 TTAAATTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.20
Consensus pattern (43 bp):
ATCGGCAAACCTTGATAAGGAAATCAGCCAGGCATTATAAAAA
Found at i:33178609 original size:12 final size:13
Alignment explanation
Indices: 33178592--33178624 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
33178582 GGTTTTCTCC
*
33178592 AAAATGAAAA-TA
1 AAAATGAAAACGA
33178604 AAAATGAAAACGA
1 AAAATGAAAACGA
33178617 AAAATGAA
1 AAAATGAA
33178625 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.73, C:0.03, G:0.12, T:0.12
Consensus pattern (13 bp):
AAAATGAAAACGA
Found at i:33181036 original size:8 final size:8
Alignment explanation
Indices: 33181025--33181049 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33181015 CCACCTACCC
33181025 CCCACTTG
1 CCCACTTG
33181033 CCCACTTG
1 CCCACTTG
33181041 CCCACTTG
1 CCCACTTG
33181049 C
1 C
33181050 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:33182209 original size:23 final size:23
Alignment explanation
Indices: 33182174--33182227 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
33182164 TCATTATTTT
*
33182174 CTATTATTGTTATTAATATACTA
1 CTATTATTCTTATTAATATACTA
* * *
33182197 TTATTATTCTTATTAATGTATTA
1 CTATTATTCTTATTAATATACTA
33182220 CTATTATT
1 CTATTATT
33182228 TTTTTTACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
CTATTATTCTTATTAATATACTA
Found at i:33182345 original size:3 final size:3
Alignment explanation
Indices: 33182337--33182382 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
33182327 ATATATTTAC
** *
33182337 ATT ATT ATT GCT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
33182383 GACATAACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:33194718 original size:44 final size:45
Alignment explanation
Indices: 33194634--33195212 Score: 389
Period size: 44 Copynumber: 13.1 Consensus size: 45
33194624 TCATTAAAGT
* * * * * *
33194634 AGATCTTGTCTTCATGTATTGG-CGTGAAGCAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * * * *
33194678 AGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * *
33194721 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC-AGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATC-CAAGATAGC
* * * * * * *
33194766 AGATATTGTCTTCATGTATTGGCA-TGAAGTAGATCGAAGGTAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * * * *
33194810 AGATCCTATCTTTCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * *
33194853 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC-AGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATC-CAAGATAGC
* * * * *
33194898 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * * * * *
33194942 AGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAATAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * *
33194985 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC-AGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATC-CAAGATAGC
* * * * *
33195030 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * * * *
33195074 AGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
* * * * * ** *
33195117 AGATCTTGTCTCCCTGTATCGGGCAGTGGAA-TAGATTGAAGATTGC
1 AGATCTTGTCTTCCTATAT-TGGTAG-CGAAGTAGATCCAAGATAGC
* * * * * *
33195163 AGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGC
1 AGATCTTGTCTTCCTATA-TTGGTAGCGAAGTAGATCCAAGATAGC
33195209 AGAT
1 AGAT
33195213 TTTACCTCCC
Statistics
Matches: 408, Mismatches: 105, Indels: 42
0.74 0.19 0.08
Matches are distributed among these distances:
43 80 0.20
44 206 0.50
45 79 0.19
46 42 0.10
47 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (45 bp):
AGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCCAAGATAGC
Found at i:33194876 original size:132 final size:132
Alignment explanation
Indices: 33194629--33195127 Score: 908
Period size: 132 Copynumber: 3.8 Consensus size: 132
33194619 TGAAGTCATT
* *
33194629 AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
33194694 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
33194759 AG
131 AG
* * * * *
33194761 AAAGCAGATATTGTCTTCATGTATTGGCATGAAGTAGATCGAAGGTAGCAGATCCTATCTTTCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
33194826 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
33194891 AG
131 AG
33194893 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
*
33194958 TATTGATAGGAAGTGGATCCAATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
33195023 AG
131 AG
33195025 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
33195090 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCT
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCT
33195128 CCCTGTATCG
Statistics
Matches: 349, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 349 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:33195345 original size:40 final size:40
Alignment explanation
Indices: 33195300--33195449 Score: 291
Period size: 40 Copynumber: 3.8 Consensus size: 40
33195290 AGATTTCAGG
33195300 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
33195340 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
33195380 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
*
33195420 TCTTATCTCCCTAAATAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
33195450 CTAAAAACAC
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
Found at i:33195830 original size:8 final size:8
Alignment explanation
Indices: 33195819--33195843 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33195809 CCACCTACCC
33195819 CCCACTTG
1 CCCACTTG
33195827 CCCACTTG
1 CCCACTTG
33195835 CCCACTTG
1 CCCACTTG
33195843 C
1 C
33195844 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:33197006 original size:23 final size:23
Alignment explanation
Indices: 33196971--33197024 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
33196961 TCATTATTTT
*
33196971 CTATTATTGTTATTAATATACTA
1 CTATTATTCTTATTAATATACTA
* * *
33196994 TTATTATTCTTATTAATGTATTA
1 CTATTATTCTTATTAATATACTA
33197017 CTATTATT
1 CTATTATT
33197025 TTTTTTACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
CTATTATTCTTATTAATATACTA
Found at i:33197142 original size:3 final size:3
Alignment explanation
Indices: 33197134--33197176 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
33197124 ATATATTTAC
** *
33197134 ATT ATT ATT GCT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
33197177 GACATAACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:33199354 original size:17 final size:18
Alignment explanation
Indices: 33199332--33199367 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
33199322 TAAATGAGTT
33199332 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
33199349 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
33199367 A
1 A
33199368 TAGAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:33199687 original size:18 final size:18
Alignment explanation
Indices: 33199664--33199700 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
33199654 TTTGTGATCA
*
33199664 AAATTGAAGGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
*
33199682 AAATTGAAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
33199700 A
1 A
33199701 CAGGAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:33201616 original size:198 final size:198
Alignment explanation
Indices: 33201268--33201664 Score: 686
Period size: 198 Copynumber: 2.0 Consensus size: 198
33201258 ACTAGTCACA
*
33201268 GCATTTTACTCGGTGAGATTGTTCCAATATAACTCATTTGTGGTGCATGATACAATAGGTGTTGA
1 GCATGTTACTCGGTGAGATTGTTCCAATATAACTCATTTGTGGTGCATGATACAATAGGTGTTGA
*
33201333 GTTGATGGTTATACACTCAAGATCTTTTAGTTAAATAACTCCCCAAGGAGTTATGCTTAAGTTAG
66 GTTGATGGTTATACACTCAAGATCTTTTAGTTAAATAACTCCCCAAAGAGTTATGCTTAAGTTAG
* *
33201398 AAAGATGGTCAAACGTTACACAATTATTAGTACATGCAAATGCCTAAGGAATTAGGCTCGTCTAA
131 AAAGATCGTCAAACGTTACACAATTATTAGTACATGCAAATGCCTAAGGAATTAAGCTCGTCTAA
33201463 TTG
196 TTG
*
33201466 GCATGTTACTCGGTGAGATTGTTCCAATATAACTCATTTGTGGTGCATGATACGATAGGTGTTGA
1 GCATGTTACTCGGTGAGATTGTTCCAATATAACTCATTTGTGGTGCATGATACAATAGGTGTTGA
*
33201531 GTTGATGGTTATACACTCAAGATCTTTTAGTTAAATAACTTCCCAAAGAGTTATGCTTAAGTTAG
66 GTTGATGGTTATACACTCAAGATCTTTTAGTTAAATAACTCCCCAAAGAGTTATGCTTAAGTTAG
* ** * * *
33201596 AAAGATCGTCAAATGTTACACGGTTATTAGTACGTGCGAATGCCTAAGGAATTAAGTTCGTCTAA
131 AAAGATCGTCAAACGTTACACAATTATTAGTACATGCAAATGCCTAAGGAATTAAGCTCGTCTAA
33201661 TTG
196 TTG
33201664 G
1 G
33201665 ATGAAATTAT
Statistics
Matches: 187, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
198 187 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (198 bp):
GCATGTTACTCGGTGAGATTGTTCCAATATAACTCATTTGTGGTGCATGATACAATAGGTGTTGA
GTTGATGGTTATACACTCAAGATCTTTTAGTTAAATAACTCCCCAAAGAGTTATGCTTAAGTTAG
AAAGATCGTCAAACGTTACACAATTATTAGTACATGCAAATGCCTAAGGAATTAAGCTCGTCTAA
TTG
Found at i:33203613 original size:15 final size:14
Alignment explanation
Indices: 33203573--33203615 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
33203563 GCAAAATAGT
*
33203573 GAAAAATATAAAAA
1 GAAAAATAAAAAAA
*
33203587 GAAAATAGAAAAAAA
1 GAAAA-ATAAAAAAA
33203602 GAAACAATAAAAAA
1 GAAA-AATAAAAAA
33203616 TAGCAAGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 5 0.21
15 18 0.75
16 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.09
Consensus pattern (14 bp):
GAAAAATAAAAAAA
Found at i:33204643 original size:25 final size:25
Alignment explanation
Indices: 33204615--33204663 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
33204605 AATTGCTCCC
33204615 TAACTCAAAGTATCAATGCTTATAT
1 TAACTCAAAGTATCAATGCTTATAT
33204640 TAACTCAAAGTATCAATGCTTATA
1 TAACTCAAAGTATCAATGCTTATA
33204664 CCAAGAATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (25 bp):
TAACTCAAAGTATCAATGCTTATAT
Found at i:33205774 original size:18 final size:18
Alignment explanation
Indices: 33205751--33205787 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
33205741 ATTTGAGAAC
33205751 AAATAAAT-AATAATATAA
1 AAATAAATAAATAA-ATAA
33205769 AAATAAATAAATAAATAA
1 AAATAAATAAATAAATAA
33205787 A
1 A
33205788 TAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAATAAATAAATAA
Found at i:33206405 original size:26 final size:26
Alignment explanation
Indices: 33206368--33206451 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
33206358 TGATACAAAT
* *
33206368 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33206394 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33206420 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
33206446 TGATAA
1 TGATAA
33206452 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:33213085 original size:49 final size:49
Alignment explanation
Indices: 33212972--33213070 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
33212962 AATGCACTTC
33212972 AGGGCACTTAAACTCACGTCATTTTGTATTGACAATAATATTTATACCA
1 AGGGCACTTAAACTCACGTCATTTTGTATTGACAATAATATTTATACCA
33213021 AGGGCACTTAAACTCACGTCATTTTGTATTGACAATAATATTTATACCA
1 AGGGCACTTAAACTCACGTCATTTTGTATTGACAATAATATTTATACCA
33213070 A
1 A
33213071 TTGAGCTAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (49 bp):
AGGGCACTTAAACTCACGTCATTTTGTATTGACAATAATATTTATACCA
Found at i:33214314 original size:17 final size:17
Alignment explanation
Indices: 33214296--33214328 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33214286 AGGTATGGTA
33214296 AAAAATA-AAAAGAAAT
1 AAAAATATAAAAGAAAT
*
33214312 AAATATATAAAAGAAAT
1 AAAAATATAAAAGAAAT
33214329 GAGACACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATATAAAAGAAAT
Found at i:33215691 original size:11 final size:11
Alignment explanation
Indices: 33215675--33215701 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33215665 ACCTATCTCT
33215675 TAATATTTACA
1 TAATATTTACA
33215686 TAATATTTACA
1 TAATATTTACA
33215697 TAATA
1 TAATA
33215702 AACTAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (11 bp):
TAATATTTACA
Found at i:33216115 original size:15 final size:16
Alignment explanation
Indices: 33216091--33216129 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
33216081 TAATTCATGC
*
33216091 AAAATAATAA-TATTT
1 AAAATAATAATTAATT
*
33216106 AAAATGATAATTAATT
1 AAAATAATAATTAATT
33216122 AAAATAAT
1 AAAATAAT
33216130 TAAAATATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AAAATAATAATTAATT
Done.