Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 103 of 325
Found at i:33220765 original size:11 final size:11
Alignment explanation
Indices: 33220749--33220791 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
33220739 TAATAACGTG
33220749 TTTAATTAGGC
1 TTTAATTAGGC
*
33220760 TTTAATTAAGTGA
1 TTTAATT-AG-GC
*
33220773 ATTAATTAGGC
1 TTTAATTAGGC
33220784 TTTAATTA
1 TTTAATTA
33220792 AGTGAACTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 15 0.58
12 4 0.15
13 7 0.27
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.47
Consensus pattern (11 bp):
TTTAATTAGGC
Found at i:33220777 original size:24 final size:24
Alignment explanation
Indices: 33220750--33220797 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
33220740 AATAACGTGT
33220750 TTAATTAGGCTTTAATTAAGTGAA
1 TTAATTAGGCTTTAATTAAGTGAA
33220774 TTAATTAGGCTTTAATTAAGTGAA
1 TTAATTAGGCTTTAATTAAGTGAA
33220798 CTTAGCTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.42
Consensus pattern (24 bp):
TTAATTAGGCTTTAATTAAGTGAA
Found at i:33220975 original size:16 final size:17
Alignment explanation
Indices: 33220950--33220999 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
33220940 TTTTCTTACT
33220950 TTAT-TAAATTATTATA
1 TTATATAAATTATTATA
*
33220966 TTATAT-AATTATTATT
1 TTATATAAATTATTATA
* *
33220982 TTATTTAAATTATAATA
1 TTATATAAATTATTATA
33220999 T
1 T
33221000 GAATTATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATATAAATTATTATA
Found at i:33221950 original size:51 final size:51
Alignment explanation
Indices: 33221869--33221991 Score: 167
Period size: 51 Copynumber: 2.4 Consensus size: 51
33221859 AGAACTAAGT
* * **
33221869 TATCCGGATGAAATATGAAGTTCTTGTTGAAACTAGAGTAATAAAGTAATA
1 TATCCGGATGAAATATGAAGTTCTTATTGAAACCAGAACAATAAAGTAATA
* *
33221920 TATCAGGATGAAATATGAAGTTCTTATTGAAGCCAGAACAATAAAGTAATA
1 TATCCGGATGAAATATGAAGTTCTTATTGAAACCAGAACAATAAAGTAATA
*
33221971 -AGTCCGGATGAAGTATGAAGT
1 TA-TCCGGATGAAATATGAAGT
33221992 AAGTTTGGGA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 1 0.02
51 62 0.98
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (51 bp):
TATCCGGATGAAATATGAAGTTCTTATTGAAACCAGAACAATAAAGTAATA
Found at i:33222619 original size:23 final size:23
Alignment explanation
Indices: 33222582--33222654 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
33222572 GAGGATTTAT
*
33222582 AATATTTCGGGTGTGTTTGGGTTG
1 AATA-TTCTGGTGTGTTTGGGTTG
*
33222606 AATATTCTGGTGTGTTTGAGTTG
1 AATATTCTGGTGTGTTTGGGTTG
* * *
33222629 GACATTCTGGTGTGTTTGGGTGG
1 AATATTCTGGTGTGTTTGGGTTG
33222652 AAT
1 AAT
33222655 CCGTGTATCT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 37 0.90
24 4 0.10
ACGTcount: A:0.15, C:0.05, G:0.36, T:0.44
Consensus pattern (23 bp):
AATATTCTGGTGTGTTTGGGTTG
Found at i:33227181 original size:20 final size:20
Alignment explanation
Indices: 33227156--33227201 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
33227146 AGGGGCACAC
*
33227156 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGAACAT
33227176 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAT
*
33227196 GGCCGT
1 GCCCGT
33227202 AGGGCTAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.30, G:0.39, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAT
Found at i:33233043 original size:17 final size:18
Alignment explanation
Indices: 33233021--33233054 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33233011 TAAATGAGTT
33233021 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
33233038 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
33233055 AATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:33233558 original size:21 final size:21
Alignment explanation
Indices: 33233534--33233594 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
33233524 GTTGTATTTG
*
33233534 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTTGTGTGTCGTATC
*
33233555 AGGCACCTTGTGTGTCGTTTC
1 AGGCACCTTGTGTGTCGTATC
*
33233576 AGGCA-CTTATGTGTCGTAT
1 AGGCACCTTGTGTGTCGTAT
33233595 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 12 0.33
21 24 0.67
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.34
Consensus pattern (21 bp):
AGGCACCTTGTGTGTCGTATC
Found at i:33242240 original size:19 final size:19
Alignment explanation
Indices: 33242216--33242254 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
33242206 GTCTGGGACA
33242216 TAGCTTCGAAAATGAAACT
1 TAGCTTCGAAAATGAAACT
33242235 TAGCTTCGAAAATGAAACT
1 TAGCTTCGAAAATGAAACT
33242254 T
1 T
33242255 CGTGTAAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (19 bp):
TAGCTTCGAAAATGAAACT
Found at i:33242351 original size:43 final size:42
Alignment explanation
Indices: 33242257--33242368 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
33242247 TGAAACTTCG
* * *
33242257 TGTAAGACCATATCTCGGATATGGCATCGATATGAGACATCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACACCA
* * * *
33242299 TGTATGACCATAGCTGGGCTATTGGCATCGATATGTGATC-CCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGA-CACCA
33242342 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
33242369 TGGCATCTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 23 0.40
43 34 0.59
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACACCA
Found at i:33250597 original size:24 final size:23
Alignment explanation
Indices: 33250555--33250669 Score: 73
Period size: 22 Copynumber: 5.0 Consensus size: 23
33250545 TATATGCATG
33250555 AAAATATATATA-TAAGATAATATA
1 AAAATATATA-ACT-AGATAATATA
*
33250579 AAAATATATAACTATGAT-A-CT-
1 AAAATATATAACTA-GATAATATA
* * *
33250600 AAAGTATATACACGAAATAGTATATA
1 AAAATATATA-ACTAGATA--ATATA
*
33250626 AAAATATATAACTA-ATAATATC
1 AAAATATATAACTAGATAATATA
33250648 AAAATATAT-AC-ATGATAATATA
1 AAAATATATAACTA-GATAATATA
33250670 TATAAAAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
20 1 0.01
21 13 0.18
22 24 0.33
23 3 0.04
24 18 0.25
25 4 0.06
26 9 0.12
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.31
Consensus pattern (23 bp):
AAAATATATAACTAGATAATATA
Found at i:33250626 original size:47 final size:48
Alignment explanation
Indices: 33250574--33250681 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 48
33250564 ATATAAGATA
* *
33250574 ATATAAAAATATATAACT-ATGATA-CTAAAGTATATACACGA-AATAGT
1 ATATAAAAATATATAACTAATAATATC-AAAATATATACACGATAATA-T
*
33250621 ATATAAAAATATATAACTAATAATATCAAAATATATACATGATAATAT
1 ATATAAAAATATATAACTAATAATATCAAAATATATACACGATAATAT
33250669 ATATAAAAA-ATAT
1 ATATAAAAATATAT
33250682 TAGAAAATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
47 22 0.40
48 28 0.51
49 5 0.09
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.31
Consensus pattern (48 bp):
ATATAAAAATATATAACTAATAATATCAAAATATATACACGATAATAT
Found at i:33250668 original size:22 final size:22
Alignment explanation
Indices: 33250571--33250657 Score: 79
Period size: 22 Copynumber: 3.8 Consensus size: 22
33250561 TATATATAAG
33250571 ATAATATAAAAATATATAACT-
1 ATAATATAAAAATATATAACTA
* * *
33250592 ATGATACT-AAAGTATATACACGAA
1 ATAATA-TAAAAATATATA-AC-TA
33250616 ATAGTATATAAAAATATATAACTA
1 ATA--ATATAAAAATATATAACTA
*
33250640 ATAATATCAAAATATATA
1 ATAATATAAAAATATATA
33250658 CATGATAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
21 14 0.27
22 17 0.33
24 6 0.12
25 3 0.06
26 12 0.23
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (22 bp):
ATAATATAAAAATATATAACTA
Found at i:33250722 original size:24 final size:26
Alignment explanation
Indices: 33250677--33250738 Score: 92
Period size: 24 Copynumber: 2.4 Consensus size: 26
33250667 ATATATAAAA
33250677 AATATTAGAAAATATATGTACATAATAT
1 AATATT-GAAAATATA-GTACATAATAT
33250705 AATA-TGAAAATATA-TACATAATAT
1 AATATTGAAAATATAGTACATAATAT
33250729 AATATTGAAA
1 AATATTGAAA
33250739 CATAATAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 14 0.42
25 5 0.15
26 9 0.27
27 1 0.03
28 4 0.12
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.34
Consensus pattern (26 bp):
AATATTGAAAATATAGTACATAATAT
Found at i:33250774 original size:9 final size:9
Alignment explanation
Indices: 33250759--33250831 Score: 57
Period size: 9 Copynumber: 8.4 Consensus size: 9
33250749 CAACATTAAA
33250759 AATATATAT
1 AATATATAT
*
33250768 GATATATAT
1 AATATATAT
33250777 -A-ATATAT
1 AATATATAT
*
33250784 AATAT-TAA
1 AATATATAT
33250792 AAGTATATAT
1 AA-TATATAT
*
33250802 AACATATA-
1 AATATATAT
*
33250810 AAAATATAT
1 AATATATAT
33250819 -ATATAATAT
1 AATAT-ATAT
33250828 AATA
1 AATA
33250832 CCTAAGTATA
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
7 6 0.12
8 16 0.31
9 22 0.43
10 7 0.14
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (9 bp):
AATATATAT
Found at i:33250785 original size:55 final size:53
Alignment explanation
Indices: 33250700--33250831 Score: 146
Period size: 53 Copynumber: 2.4 Consensus size: 53
33250690 ATATGTACAT
*
33250700 AATATAATATGAAAATATATACATAATATAATATTGAAACA-TAATAATACAACAT-TAAA
1 AATAT-ATATG-ATATATATA-AT-ATATAATATT-AAA-AGT-AT-ATACAACATATAAA
*
33250759 AATATATATGATATATATAATATATAATATTAAAAGTATATATAACATATAAA
1 AATATATATGATATATATAATATATAATATTAAAAGTATATACAACATATAAA
33250812 AATATATAT-ATA-ATATAATA
1 AATATATATGATATATATAATA
33250832 CCTAAGTATA
Statistics
Matches: 69, Mismatches: 2, Indels: 12
0.83 0.02 0.14
Matches are distributed among these distances:
51 8 0.12
52 11 0.16
53 16 0.23
54 4 0.06
55 10 0.14
56 2 0.03
57 8 0.12
58 5 0.07
59 5 0.07
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (53 bp):
AATATATATGATATATATAATATATAATATTAAAAGTATATACAACATATAAA
Found at i:33250799 original size:34 final size:35
Alignment explanation
Indices: 33250753--33250819 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
33250743 ATAATACAAC
* * *
33250753 ATTAAAAATATATATGATATAT-ATAATATATAAT
1 ATTAAAAATATATATAACATATAAAAATATATAAT
*
33250787 ATTAAAAGTATATATAACATATAAAAATATATA
1 ATTAAAAATATATATAACATATAAAAATATATA
33250820 TATAATATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 19 0.68
35 9 0.32
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.37
Consensus pattern (35 bp):
ATTAAAAATATATATAACATATAAAAATATATAAT
Found at i:33250862 original size:53 final size:53
Alignment explanation
Indices: 33250750--33250865 Score: 134
Period size: 52 Copynumber: 2.2 Consensus size: 53
33250740 ATAATAATAC
* *
33250750 AACAT-TAAAAATATATATGATATATATAATATATAATATTAAAAGTATATAT
1 AACATATAAAAATATATATGATATATATAATACATAATATTAAAAGTACATAT
* *
33250802 AACATATAAAAATATATAT-ATA-ATATAATACCTAAGTA-TACTAAGTACATAT
1 AACATATAAAAATATATATGATATATATAATACATAA-TATTA-AAAGTACATAT
33250854 -ACATATATAAAA
1 AACATATA-AAAA
33250866 GATCCTATAC
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
51 20 0.36
52 23 0.41
53 13 0.23
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.34
Consensus pattern (53 bp):
AACATATAAAAATATATATGATATATATAATACATAATATTAAAAGTACATAT
Found at i:33252599 original size:45 final size:44
Alignment explanation
Indices: 33252501--33252600 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 44
33252491 GATATCCTCG
* * *
33252501 ATCAGCTCCACTGCAACTTCAGGGAGGCAAGACTTGCAACTTTA
1 ATCAGCTCCACTGCAACTTCAGGGAGGCAAAACTGGCAACTTCA
* * ***
33252545 ATCTTGCTCCACTGCAACTTCAGGGATGCAAAATCTGGTGTCTTCA
1 ATC-AGCTCCACTGCAACTTCAGGGAGGCAAAA-CTGGCAACTTCA
33252591 ATCAGCTCCA
1 ATCAGCTCCA
33252601 ATCTTTATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
44 3 0.07
45 32 0.71
46 10 0.22
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (44 bp):
ATCAGCTCCACTGCAACTTCAGGGAGGCAAAACTGGCAACTTCA
Found at i:33252684 original size:12 final size:12
Alignment explanation
Indices: 33252667--33252696 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
33252657 AATTGACTCT
*
33252667 TTAAAACAGACA
1 TTAAAACAGAAA
33252679 TTAAAACAGAAA
1 TTAAAACAGAAA
33252691 TTAAAA
1 TTAAAA
33252697 ATAGCTCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.10, G:0.07, T:0.20
Consensus pattern (12 bp):
TTAAAACAGAAA
Found at i:33252943 original size:14 final size:14
Alignment explanation
Indices: 33252924--33252958 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
33252914 GAGTCGATTT
33252924 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
* *
33252938 TTGAAAAACAGATA
1 TTGAAAAACAAAAA
33252952 TTGAAAA
1 TTGAAAA
33252959 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.06, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:33252984 original size:87 final size:86
Alignment explanation
Indices: 33252800--33253120 Score: 394
Period size: 87 Copynumber: 3.6 Consensus size: 86
33252790 ATGTGACCCA
* *
33252800 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAATATAAATTGAAAGAACAGGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAAA-AACA-GAA
* *
33252865 TTGAAAATACCTAATCGTGTCCTG
63 TTGAAAATACCTCAGCGTGTCCTG
* *
33252889 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAAAAATTGAAAAACAGATATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAACAGA-ATT
33252954 GAAAATACCTCAGCGTGTCCTG
65 GAAAATACCTCAGCGTGTCCTG
* * * *
33252976 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTCGAAAAATATAAATTGAAAAAATAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG-AAAAACAG-AAT
*
33253041 TGAAAACT-CCTCAGCATGTGAGCC-G
64 TGAAAA-TACCTCAGC--GTG-TCCTG
** * * *
33253066 AGGCTCAACTCACCTCTTTCAATATGAATTGATTTTTGACAAACAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAA
33253121 TTACCTCAGC
Statistics
Matches: 204, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
86 2 0.01
87 74 0.36
88 42 0.21
89 36 0.18
90 48 0.24
91 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAACAGAATTG
AAAATACCTCAGCGTGTCCTG
Found at i:33253034 original size:15 final size:15
Alignment explanation
Indices: 33253014--33253046 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
33253004 TTGATTTTCG
*
33253014 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
33253029 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
33253044 AAA
1 AAA
33253047 CTCCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:33253104 original size:177 final size:176
Alignment explanation
Indices: 33252800--33253120 Score: 452
Period size: 177 Copynumber: 1.8 Consensus size: 176
33252790 ATGTGACCCA
* * * * *
33252800 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAATATAAATTGAAAGAACAGGAA
1 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTCGAAAAATATAAATTGAAAAAACAGAAA
* *
33252865 TTGAAAATACCTAATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAA
66 TTGAAAATACCTAATCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAATCGATTTTTGAAA
33252930 AACAAAAATTGAAAAACAGATATTGAAAATACCTCAGCGTGTCCTG
131 AACAAAAATTGAAAAACAGATATTGAAAATACCTCAGCGTGTCCTG
*
33252976 AGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTCGAAAAATATAAATTGAAAAAATAGAAA
1 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTCGAAAAATATAAATTGAAAAAACAGAAA
** *
33253040 TTGAAAACT-CCTCAGCAT-GTGAGCC-GAGGCTCAACTCACCTCTTTCAATATGAATTGATTTT
66 TTGAAAA-TACCT-A--ATCGTG-GCCTGAGGCTCAACTCACCTCTCGCAATATGAATCGATTTT
* *
33253102 TGACAAACAGAAATTGAAA
126 TGAAAAACAAAAATTGAAA
33253121 TTACCTCAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
175 37 0.29
176 33 0.26
177 53 0.42
178 4 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (176 bp):
AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTCGAAAAATATAAATTGAAAAAACAGAAA
TTGAAAATACCTAATCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAATCGATTTTTGAAA
AACAAAAATTGAAAAACAGATATTGAAAATACCTCAGCGTGTCCTG
Found at i:33253228 original size:72 final size:71
Alignment explanation
Indices: 33253030--33253266 Score: 278
Period size: 72 Copynumber: 3.2 Consensus size: 71
33253020 ATAAATTGAA
* ** *
33253030 AAAATAGAAATTGAAAACT-CCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTTTCAATATGAA
1 AAAATAGAAATTGAAAA-TACCTCAGC--GTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAG
33253094 TTGATTTTTG
62 TTGATTTTTG
* * *
33253104 ACAAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATACGAGTT
1 A-AAATAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
33253169 AATTTTTG
64 GATTTTTG
* * *
33253177 AAAATAGAAATTTAAAATACCTCAGCGTGTCCAGAGGCTCAACTCATCTCTCGCAATATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
33253242 ATTTTTG
65 ATTTTTG
* *
33253249 AAAAATATAAATTAAAAA
1 -AAAATAGAAATTGAAAA
33253267 AATAGAAACT
Statistics
Matches: 141, Mismatches: 19, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
72 63 0.45
73 55 0.39
74 2 0.01
75 21 0.15
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (71 bp):
AAAATAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTG
Found at i:33253328 original size:90 final size:88
Alignment explanation
Indices: 33253177--33253342 Score: 246
Period size: 90 Copynumber: 1.9 Consensus size: 88
33253167 TTAATTTTTG
* * *
33253177 AAAATAGAAATTTAAAATACCTCAGCGTGTCCAGAGGCTCAACTCATCTCTCGCAATATGAGTTG
1 AAAATAGAAACTAAAAATACCTCAGCGTGTCCAGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
33253242 ATTTTTGAAAAATATAAATTAAA
66 AATTTTGAAAAATATAAATTAAA
33253265 AAAATAGAAACTAAAAATACCTCAGCATGTGAGT-C-GAGGCTCAACTCACCTCTCGCAATATGA
1 AAAATAGAAACTAAAAATACCTCAGC--GT--GTCCAGAGGCTCAACTCACCTCTCGCAATATGA
33253328 GTTGAATTTTGAAAA
62 GTTGAATTTTGAAAA
33253343 TAAACATCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
88 24 0.34
90 43 0.61
91 1 0.01
92 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.27
Consensus pattern (88 bp):
AAAATAGAAACTAAAAATACCTCAGCGTGTCCAGAGGCTCAACTCACCTCTCGCAATATGAGTTG
AATTTTGAAAAATATAAATTAAA
Found at i:33265806 original size:47 final size:46
Alignment explanation
Indices: 33265720--33265830 Score: 122
Period size: 46 Copynumber: 2.4 Consensus size: 46
33265710 TAAAATATAT
* * *
33265720 ATAAGATATA-AAAATATATAACTATGATACTAAAGTATATACACG
1 ATAATATATATAAAATATATAACTATAATACTAAAATATATACACG
*
33265765 A-AATAGTATATAAAATATATAACTAATAATA-TCAAAATATATACATG
1 ATAATA-TATATAAAATATATAACT-ATAATACT-AAAATATATACACG
*
33265812 ATAATATATA-AAAAAATAT
1 ATAATATATATAAAATATAT
33265831 TAGAAAATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
44 3 0.05
45 5 0.09
46 22 0.39
47 22 0.39
48 4 0.07
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.31
Consensus pattern (46 bp):
ATAATATATATAAAATATATAACTATAATACTAAAATATATACACG
Found at i:33265818 original size:22 final size:21
Alignment explanation
Indices: 33265709--33265807 Score: 71
Period size: 21 Copynumber: 4.6 Consensus size: 21
33265699 AAATATATGC
*
33265709 ATAAAATATAT-A-TAA-GAT
1 ATAAAATATATAACTAATAAT
*
33265727 ATAAAAATATATAACT-ATGAT
1 AT-AAAATATATAACTAATAAT
* *
33265748 ACTAAAGTATATACACGAAATAGTAT
1 A-TAAAATATATA-AC-TAATA--AT
33265774 ATAAAATATATAACTAATAAT
1 ATAAAATATATAACTAATAAT
33265795 ATCAAAATATATA
1 AT-AAAATATATA
33265808 CATGATAATA
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
18 2 0.03
19 9 0.14
20 2 0.03
21 18 0.28
22 13 0.20
23 4 0.06
24 4 0.06
25 10 0.15
26 3 0.05
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.31
Consensus pattern (21 bp):
ATAAAATATATAACTAATAAT
Found at i:33265822 original size:45 final size:45
Alignment explanation
Indices: 33265725--33265824 Score: 116
Period size: 47 Copynumber: 2.2 Consensus size: 45
33265715 TATATATAAG
* *
33265725 ATATA-AAAATATATAACTATGATACTAAAGTATATACACGAAATA
1 ATATATAAAATATATAACTATAATACTAAAATATATACACG-AATA
* *
33265770 GTATATAAAATATATAACTAATAATA-TCAAAATATATACATG-ATA
1 ATATATAAAATATATAACT-ATAATACT-AAAATATATACACGAATA
33265815 ATATATAAAA
1 ATATATAAAA
33265825 AAATATTAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
45 16 0.34
46 14 0.30
47 17 0.36
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (45 bp):
ATATATAAAATATATAACTATAATACTAAAATATATACACGAATA
Found at i:33265865 original size:23 final size:23
Alignment explanation
Indices: 33265803--33265885 Score: 80
Period size: 23 Copynumber: 3.6 Consensus size: 23
33265793 ATATCAAAAT
* * *
33265803 ATATACATGATAATATATA-AAA
1 ATATATATGAAAATATATACATA
*
33265825 AAATAT-TAGAAAATATATGTACATA
1 ATATATAT-GAAAATATA--TACATA
33265850 ATATATATGAAAATATATACATA
1 ATATATATGAAAATATATACATA
*
33265873 ATATATATTAAAA
1 ATATATATGAAAA
33265886 CATAATAATA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 1 0.02
22 12 0.24
23 18 0.36
24 2 0.04
25 16 0.32
26 1 0.02
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATATATGAAAATATATACATA
Found at i:33265943 original size:20 final size:19
Alignment explanation
Indices: 33265919--33265970 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
33265909 TATATGATAT
33265919 ATATATATATAATATTAAA
1 ATATATATATAATATTAAA
33265938 AGTATATATA-ACATA-TAAA
1 A-TATATATATA-ATATTAAA
33265957 A-ATATATATAATAT
1 ATATATATATAATAT
33265971 AATACCTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 7 0.24
20 11 0.38
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATATATATAATATTAAA
Found at i:33265962 original size:33 final size:32
Alignment explanation
Indices: 33265872--33265962 Score: 83
Period size: 33 Copynumber: 2.8 Consensus size: 32
33265862 ATATATACAT
* * * * *
33265872 AATATATATTAAAACATAATAATACAACATTAA
1 AATATATA-TAACATATAAAAATATAATATTAA
* * * *
33265905 AATATATATGATATATATATATATAATATTAA
1 AATATATATAACATATAAAAATATAATATTAA
33265937 AAGTATATATAACATATAAAAATATA
1 AA-TATATATAACATATAAAAATATA
33265963 TATAATATAA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
32 18 0.40
33 27 0.60
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (32 bp):
AATATATATAACATATAAAAATATAATATTAA
Found at i:33265965 original size:52 final size:55
Alignment explanation
Indices: 33265849--33265984 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 55
33265839 ATATGTACAT
*
33265849 AATATATATGAAAATATATACATAATATATATTAAAACATAATAATACAACATTAA
1 AATATATATG-ATATATATACATAATATATATTAAAACATAATAATACAACATTAA
* * *
33265905 AATATATATGATATATATATAT-ATA-ATATTAAAA-GT-AT-ATATAACATATAAA
1 AATATATATGATATATATACATAATATATATTAAAACATAATAATACAACAT-T-AA
* *
33265957 AATATATATAATATA-ATACCTAAGTATA
1 AATATATATGATATATATACATAA-TATA
33265985 CTAAGTACAT
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
50 8 0.12
51 7 0.10
52 18 0.26
53 11 0.16
54 4 0.06
55 10 0.15
56 10 0.15
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (55 bp):
AATATATATGATATATATACATAATATATATTAAAACATAATAATACAACATTAA
Found at i:33267616 original size:21 final size:22
Alignment explanation
Indices: 33267587--33267629 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33267577 TTACATGTAA
* *
33267587 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
33267608 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
33267630 ACTTCATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:33272406 original size:12 final size:12
Alignment explanation
Indices: 33272376--33272422 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
33272366 AAATTAAATT
33272376 TATTTAAA-ATA
1 TATTTAAATATA
33272387 TGAGTTTAAAT-TGA
1 T-A-TTTAAATAT-A
33272401 TATTTAAATATA
1 TATTTAAATATA
33272413 TATTTAAATA
1 TATTTAAATA
33272423 CAAACTAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
11 1 0.03
12 19 0.61
13 9 0.29
14 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (12 bp):
TATTTAAATATA
Found at i:33272418 original size:24 final size:23
Alignment explanation
Indices: 33272369--33272421 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
33272359 TAACAAAAAA
33272369 TTAAATTTATTTAAAATATGAGT
1 TTAAATTTATTTAAAATATGAGT
33272392 TTAAATTGATATTTAAATATAT-A-T
1 TTAAATT--TATTTAAA-ATATGAGT
33272416 TTAAAT
1 TTAAAT
33272422 ACAAACTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 7 0.26
24 7 0.26
25 9 0.33
26 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (23 bp):
TTAAATTTATTTAAAATATGAGT
Found at i:33277636 original size:11 final size:11
Alignment explanation
Indices: 33277610--33277665 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
33277600 ATTAAAGAGG
*
33277610 AAAGAAAATAGA
1 AAAGAAAA-ATA
*
33277622 AAAGAAAAATC
1 AAAGAAAAATA
33277633 AAAGTAAAAGA-A
1 AAAG-AAAA-ATA
*
33277645 AAAGAAAAAAA
1 AAAGAAAAATA
33277656 AAAGAAAAAT
1 AAAGAAAAAT
33277666 TCAAAGAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
10 1 0.03
11 19 0.51
12 16 0.43
13 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (11 bp):
AAAGAAAAATA
Found at i:33277643 original size:17 final size:17
Alignment explanation
Indices: 33277621--33277674 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
33277611 AAGAAAATAG
*
33277621 AAAAGAAAAATCAAAGT
1 AAAAGAAAAATCAAAGA
** *
33277638 AAAAGAAAAAGAAAAAA
1 AAAAGAAAAATCAAAGA
33277655 AAAAGAAAAATTCAAAGA
1 AAAAGAAAAA-TCAAAGA
33277673 AA
1 AA
33277675 GTATATACTA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 23 0.79
18 6 0.21
ACGTcount: A:0.78, C:0.04, G:0.11, T:0.07
Consensus pattern (17 bp):
AAAAGAAAAATCAAAGA
Found at i:33277664 original size:6 final size:6
Alignment explanation
Indices: 33277610--33277664 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
33277600 ATTAAAGAGG
** *
33277610 AAAGAA AATAG-A AAAGAA AAA-TC AAAGTA AAAGAA AAAGAA AAA-AA
1 AAAGAA AA-AGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
33277656 AAAGAA AAA
1 AAAGAA AAA
33277665 TTCAAAGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 10 0.24
6 29 0.71
7 2 0.05
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.05
Consensus pattern (6 bp):
AAAGAA
Found at i:33280186 original size:31 final size:31
Alignment explanation
Indices: 33280149--33280207 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
33280139 TTTAATTTGA
*
33280149 TCAATTTTACTTATTCTACTTTTTGAATCGG
1 TCAATTTTACTCATTCTACTTTTTGAATCGG
* * *
33280180 TCAATTTTAGTCCTTGTACTTTTTGAAT
1 TCAATTTTACTCATTCTACTTTTTGAAT
33280208 TTTGAAGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.10, T:0.53
Consensus pattern (31 bp):
TCAATTTTACTCATTCTACTTTTTGAATCGG
Found at i:33281835 original size:15 final size:15
Alignment explanation
Indices: 33281815--33281864 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
33281805 ATACTATAAA
33281815 ATATTTATTATTAAT
1 ATATTTATTATTAAT
* *
33281830 ATATTTATAATT-GT
1 ATATTTATTATTAAT
*
33281844 AATATTTATTATTAAA
1 -ATATTTATTATTAAT
33281860 ATATT
1 ATATT
33281865 AATATTGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 1 0.04
15 27 0.96
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:33281849 original size:30 final size:28
Alignment explanation
Indices: 33281814--33281878 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 28
33281804 TATACTATAA
* *
33281814 AATATTTATTATTAATATATTTATAATTG
1 AATATTTATTATTAAAATATTAAT-ATTG
33281843 TAATATTTATTATTAAAATATTAATATTG
1 -AATATTTATTATTAAAATATTAATATTG
33281872 AATATTT
1 AATATTT
33281879 TCTATAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 7 0.21
29 4 0.12
30 22 0.67
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (28 bp):
AATATTTATTATTAAAATATTAATATTG
Found at i:33282086 original size:10 final size:9
Alignment explanation
Indices: 33282057--33282082 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33282047 TTGAAAATAT
33282057 AATATTTTA
1 AATATTTTA
33282066 AATATTTTA
1 AATATTTTA
33282075 AATATTTT
1 AATATTTT
33282083 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATATTTTA
Found at i:33282442 original size:44 final size:44
Alignment explanation
Indices: 33282391--33282476 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
33282381 TTTGTGAGCA
* *
33282391 ATGTCACCAGAATCTCATCAAAAGTTGTTGAAATTTGACAAACT
1 ATGTCACCAGAATCTCATCAAAAATGGTTGAAATTTGACAAACT
33282435 ATGTCACCAGAATCTCATCAAAAATGGTTGAAATTTGACAAA
1 ATGTCACCAGAATCTCATCAAAAATGGTTGAAATTTGACAAA
33282477 TTATAAAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (44 bp):
ATGTCACCAGAATCTCATCAAAAATGGTTGAAATTTGACAAACT
Found at i:33291027 original size:164 final size:164
Alignment explanation
Indices: 33290756--33291348 Score: 1078
Period size: 164 Copynumber: 3.6 Consensus size: 164
33290746 CTGTAAAACA
*
33290756 AAAACAAAAACGAAAGAAAAAAGCACTTAATGGTCCATGCAGGTCTCGAACCTGCGACCTTCGCG
1 AAAACAAAAACGAAAGAAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
33290821 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCATTGGTGTTCACGCCCAAATTCTGTT
66 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCATTGGTGTTCACGCCCAAATTCTGTT
33290886 CTACTAAATAGTGTAAAACGGTGCCGTTTTCCAG
131 CTACTAAATAGTGTAAAACGGTGCCGTTTTCCAG
*
33290920 AAAACAAAAACGAAAGTAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
1 AAAACAAAAACGAAAGAAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
*
33290985 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCATTGGTGTTCACGCCCAAATTCAGTT
66 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCATTGGTGTTCACGCCCAAATTCTGTT
* * * *
33291050 TTACTAAATACTGTAAAACGTTGCCGTTTCCCAG
131 CTACTAAATAGTGTAAAACGGTGCCGTTTTCCAG
*
33291084 AAAACAAAAACGAAAGAAAAAAGCACTGAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
1 AAAACAAAAACGAAAGAAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
* *
33291149 TTATTAGCACGACGCTCTAACCATCTGAGCTAATAGGCCCTTGGTGTTCACGCCCAAATTCTGTT
66 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCATTGGTGTTCACGCCCAAATTCTGTT
33291214 CTACTAAATAGTGTAAAACGGTGCCGTTTTCCAG
131 CTACTAAATAGTGTAAAACGGTGCCGTTTTCCAG
*
33291248 AAAACAAAAACGAAAGTAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
1 AAAACAAAAACGAAAGAAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
*
33291313 TTATTAGCACGACGCTCTAACCAGCTGAGTTAATAG
66 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAG
33291349 ACCTTTATGT
Statistics
Matches: 409, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
164 409 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (164 bp):
AAAACAAAAACGAAAGAAAAAAGCACTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG
TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCATTGGTGTTCACGCCCAAATTCTGTT
CTACTAAATAGTGTAAAACGGTGCCGTTTTCCAG
Found at i:33292275 original size:100 final size:101
Alignment explanation
Indices: 33292168--33292371 Score: 250
Period size: 100 Copynumber: 2.0 Consensus size: 101
33292158 TAATTGATTG
* * ** * * *
33292168 GTGGTTTTGATGAAAGGATTGTCTTTGTTTCTTCGTTTCAAGCTATAAAGCATCTAATTTGTTAA
1 GTGGTTTTGATAAAAGGATTGTCCTCCTTTCTTCATCTCAAGCTATAAAGCATCTAATTTGGTAA
* *
33292233 TTTCATGTAAAA-AAATTG-CAATTTGAAAAGAAGTT
66 CTTCATGGAAAAGAAATTGTCAATTT-AAAAGAAGTT
* * *
33292268 GTGGTTTTGATAAAAGGATTGTCCTCCTTTCTTCATCTCATGCTATAAAGCGTCTACTTTGGTAA
1 GTGGTTTTGATAAAAGGATTGTCCTCCTTTCTTCATCTCAAGCTATAAAGCATCTAATTTGGTAA
* *
33292333 CTTCATGGAAAAGTTACTTGTCAATTTAAAAGAAGTT
66 CTTCATGGAAAAG-AAATTGTCAATTTAAAAGAAGTT
33292370 GT
1 GT
33292372 ATAGGTTCAT
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
100 65 0.75
102 16 0.18
103 6 0.07
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (101 bp):
GTGGTTTTGATAAAAGGATTGTCCTCCTTTCTTCATCTCAAGCTATAAAGCATCTAATTTGGTAA
CTTCATGGAAAAGAAATTGTCAATTTAAAAGAAGTT
Found at i:33296649 original size:2 final size:2
Alignment explanation
Indices: 33296642--33296666 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33296632 TGGAAATAGA
33296642 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
33296667 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33299364 original size:8 final size:8
Alignment explanation
Indices: 33299351--33299376 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
33299341 ATCCTCAAAA
33299351 AGAGTGAG
1 AGAGTGAG
33299359 AGAGTGAG
1 AGAGTGAG
33299367 AGAGTGAG
1 AGAGTGAG
33299375 AG
1 AG
33299377 CGAACGCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.50, T:0.12
Consensus pattern (8 bp):
AGAGTGAG
Found at i:33301391 original size:21 final size:21
Alignment explanation
Indices: 33301365--33301404 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
33301355 CAAAATGATG
33301365 TAGTTTTGTA-TTTTAACTTAA
1 TAGTTTTG-ACTTTTAACTTAA
33301386 TAGTTTTGACTTTTAACTT
1 TAGTTTTGACTTTTAACTT
33301405 TAAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.25, C:0.07, G:0.10, T:0.57
Consensus pattern (21 bp):
TAGTTTTGACTTTTAACTTAA
Found at i:33314759 original size:17 final size:17
Alignment explanation
Indices: 33314733--33314766 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33314723 GATTTAATTT
*
33314733 ATATATTTTAAATTTTA
1 ATATAATTTAAATTTTA
*
33314750 ATATAATTTAATTTTTA
1 ATATAATTTAAATTTTA
33314767 TATTTTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATATAATTTAAATTTTA
Found at i:33314769 original size:16 final size:17
Alignment explanation
Indices: 33314730--33314769 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
33314720 TAAGATTTAA
*
33314730 TTTATATATTTTAAATT
1 TTTATATAATTTAAATT
*
33314747 TTAATATAATTT-AATT
1 TTTATATAATTTAAATT
33314763 TTTATAT
1 TTTATAT
33314770 TTTTATCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATATAATTTAAATT
Found at i:33319089 original size:3 final size:3
Alignment explanation
Indices: 33319077--33319108 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
33319067 TTCCTCCTCC
*
33319077 TCT TCC TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
33319109 ACCTCAGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:33325251 original size:14 final size:14
Alignment explanation
Indices: 33325212--33325251 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
33325202 TTCAATTTGA
33325212 TTTA-TTTTTAAAT
1 TTTATTTTTTAAAT
* *
33325225 TTTATTATATAAAT
1 TTTATTTTTTAAAT
33325239 TTTATTTTTTAAA
1 TTTATTTTTTAAA
33325252 AAAAAATTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTATTTTTTAAAT
Found at i:33325717 original size:19 final size:20
Alignment explanation
Indices: 33325693--33325730 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
33325683 TAATTTCTTT
*
33325693 TATATTTTT-TAAAATTAAA
1 TATATTTTTAAAAAATTAAA
33325712 TATATTTTTAAAAAATTAA
1 TATATTTTTAAAAAATTAA
33325731 TGTGATAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATATTTTTAAAAAATTAAA
Found at i:33333864 original size:23 final size:23
Alignment explanation
Indices: 33333834--33333878 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
33333824 TAAGGATGGT
33333834 AGAGTAAGATGAAAACAGATCTC
1 AGAGTAAGATGAAAACAGATCTC
33333857 AGAGTAAGATGAAAACAGATCT
1 AGAGTAAGATGAAAACAGATCT
33333879 TACCTTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.22, T:0.18
Consensus pattern (23 bp):
AGAGTAAGATGAAAACAGATCTC
Found at i:33349226 original size:3 final size:3
Alignment explanation
Indices: 33349218--33349244 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
33349208 TCAGTTTGTC
33349218 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
33349245 CATTTGGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33358213 original size:17 final size:17
Alignment explanation
Indices: 33358168--33358219 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
33358158 ATTTGACAAA
*
33358168 GCCCGATAAATGATAAT
1 GCCCAATAAATGATAAT
*
33358185 GCCTGAAATAAATGATAAT
1 GCC--CAATAAATGATAAT
*
33358204 GCCCAATAAACGATAA
1 GCCCAATAAATGATAA
33358220 ATGATAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.48
19 15 0.52
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.21
Consensus pattern (17 bp):
GCCCAATAAATGATAAT
Found at i:33363207 original size:23 final size:23
Alignment explanation
Indices: 33363176--33363248 Score: 71
Period size: 22 Copynumber: 3.2 Consensus size: 23
33363166 CATAAATCTG
33363176 TTTAGAACACTTAAGTAATCATA
1 TTTAGAACACTTAAGTAATCATA
* *
33363199 TTATA-AACA-TAAATTAAATC-TA
1 TT-TAGAACACTTAAGT-AATCATA
*
33363221 TTTAGAACACTTAAGTAACCATAA
1 TTTAGAACACTTAAGTAATCAT-A
33363245 TTTA
1 TTTA
33363249 TTGTCAACTT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
21 2 0.05
22 15 0.38
23 15 0.38
24 7 0.18
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (23 bp):
TTTAGAACACTTAAGTAATCATA
Found at i:33369503 original size:43 final size:43
Alignment explanation
Indices: 33369444--33369670 Score: 221
Period size: 43 Copynumber: 5.3 Consensus size: 43
33369434 GTTTTCCCAC
* *
33369444 AAACGCCGCTAAAGAACATGACATTTAGCAGCGTTTTTACTAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACTAA
** * *
33369487 AAACGGTGCTATAGAACATGACCTTTAG-AGACGCTTCT-CATAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAG-CGCTTTTAC-TAA
* * **
33369530 AAACGCCGCTCAAGAATATGACCTTTAGTGGCGCTTTTACTAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACTAA
* * * * * *
33369573 AAACGCCACTATAGAACATAACCTTTAGCGGCACTTCT-C-AA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACTAA
*
33369614 AAACGCCGCTAAAGAACATGACCTTTAGC-GTCGATTTTACTAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAG-CGCTTTTACTAA
* *
33369657 AAATGCTGCTAAAG
1 AAACGCCGCTAAAG
33369671 GTCATGTTCT
Statistics
Matches: 148, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
40 1 0.01
41 32 0.22
42 5 0.03
43 108 0.73
44 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACTAA
Found at i:33369684 original size:84 final size:84
Alignment explanation
Indices: 33369444--33369667 Score: 279
Period size: 86 Copynumber: 2.6 Consensus size: 84
33369434 GTTTTCCCAC
* * *
33369444 AAACGCCGCTAAAGAACATGACATTTAGCAGCGTTTTTACTAAAAACGGTGCTATAGAACATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGC-GCGATTTTACTAAAAACGCTGCTATAGAACATGAC
* *
33369509 CTTTAGAGACGCTTCTCATAA
65 CTTTAGAGGCACTTCTCA-AA
* * * * ** *
33369530 AAACGCCGCTCAAGAATATGACCTTTAGTGGCGCTTTTACTAAAAACGCCACTATAGAACATAAC
1 AAACGCCGCTAAAGAACATGACCTTTAG-CGCGATTTTACTAAAAACGCTGCTATAGAACATGAC
*
33369595 CTTTAGCGGCACTTCTC-AA
65 CTTTAGAGGCACTTCTCAAA
*
33369614 AAACGCCGCTAAAGAACATGACCTTTAGCGTCGATTTTACTAAAAATGCTGCTA
1 AAACGCCGCTAAAGAACATGACCTTTAGCG-CGATTTTACTAAAAACGCTGCTA
33369668 AAGGTCATGT
Statistics
Matches: 117, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
83 1 0.01
84 47 0.40
86 69 0.59
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (84 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGCGATTTTACTAAAAACGCTGCTATAGAACATGACC
TTTAGAGGCACTTCTCAAA
Found at i:33369864 original size:43 final size:43
Alignment explanation
Indices: 33369816--33369983 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 43
33369806 ACAAATGTCT
* *
33369816 CTAAAGAACATGACATTTAGCGGCGCTTCTCA-TAAAAACGCCA
1 CTAAAGAACATGACCTTTAGCGGCACTT-TCACTAAAAACGCCA
* ** * *
33369859 CTAAAGAATATGACCTTTAATGGCACTTTTACTAAAAACGCCG
1 CTAAAGAACATGACCTTTAGCGGCACTTTCACTAAAAACGCCA
* * *
33369902 CTATAGAACATGACCTTTAGCTGCAC-TTCTC-AAAAACG-CA
1 CTAAAGAACATGACCTTTAGCGGCACTTTCACTAAAAACGCCA
* * *
33369942 GCCAAAGAACATGACCTTTAGCGGCGCTTTTACTAAAAACGC
1 -CTAAAGAACATGACCTTTAGCGGCACTTTCACTAAAAACGC
33369984 TGCTAAAAGT
Statistics
Matches: 99, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
40 1 0.01
41 29 0.29
42 8 0.08
43 61 0.62
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (43 bp):
CTAAAGAACATGACCTTTAGCGGCACTTTCACTAAAAACGCCA
Found at i:33369972 original size:84 final size:85
Alignment explanation
Indices: 33369820--33369988 Score: 225
Period size: 84 Copynumber: 2.0 Consensus size: 85
33369810 ATGTCTCTAA
* * * *
33369820 AGAACATGACATTTAGCGGCGCTTCTCATAAAAACGCCACTAAAGAATATGACCTTTAATGGCAC
1 AGAACATGACATTTAGCGGCACTTCTCA-AAAAACGCCACCAAAGAACATGACCTTTAACGGCAC
33369885 TTTTACTAAAAACGCCGCTAT
65 TTTTACTAAAAACGCCGCTAT
* * * *
33369906 AGAACATGACCTTTAGCTGCACTTCTC-AAAAACG-CAGCCAAAGAACATGACCTTTAGCGGCGC
1 AGAACATGACATTTAGCGGCACTTCTCAAAAAACGCCA-CCAAAGAACATGACCTTTAACGGCAC
*
33369969 TTTTACTAAAAACGCTGCTA
65 TTTTACTAAAAACGCCGCTA
33369989 AAAGTCATGT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
83 2 0.03
84 47 0.64
86 24 0.33
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (85 bp):
AGAACATGACATTTAGCGGCACTTCTCAAAAAACGCCACCAAAGAACATGACCTTTAACGGCACT
TTTACTAAAAACGCCGCTAT
Found at i:33370338 original size:27 final size:23
Alignment explanation
Indices: 33370294--33370358 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 23
33370284 AAAATAGTTT
33370294 AAAAA-TT-ATAAAAA-TATTCAA
1 AAAAAGTTAATAAAAATTATT-AA
*
33370315 AAAAATGTATAATTAAAAATTATTAT
1 AAAAA-GT-TAA-TAAAAATTATTAA
33370341 AAAAAGTTAATAAAAATT
1 AAAAAGTTAATAAAAATT
33370359 CCAAAAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
21 5 0.14
23 9 0.24
24 4 0.11
25 3 0.08
26 12 0.32
27 4 0.11
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (23 bp):
AAAAAGTTAATAAAAATTATTAA
Found at i:33376850 original size:11 final size:11
Alignment explanation
Indices: 33376834--33376882 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
33376824 AAAAAATAAT
33376834 TTTTTTATATA
1 TTTTTTATATA
*
33376845 TTTTTTA-AAA
1 TTTTTTATATA
33376855 GTTTTTT-TA-A
1 -TTTTTTATATA
*
33376865 TATTTTATATA
1 TTTTTTATATA
33376876 TTTTTTA
1 TTTTTTA
33376883 AAAATATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
9 5 0.16
10 5 0.16
11 21 0.68
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (11 bp):
TTTTTTATATA
Found at i:33378018 original size:24 final size:24
Alignment explanation
Indices: 33377973--33378019 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
33377963 TTAAATACTT
*
33377973 TTTGAATAATTAATATAAATTTAA
1 TTTGAATAATAAATATAAATTTAA
*
33377997 TTTGAATAAATAAAT-TATATTTA
1 TTTGAAT-AATAAATATAAATTTA
33378020 CGGTGTCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (24 bp):
TTTGAATAATAAATATAAATTTAA
Found at i:33379962 original size:23 final size:22
Alignment explanation
Indices: 33379893--33379955 Score: 85
Period size: 21 Copynumber: 2.9 Consensus size: 22
33379883 TATGACACAT
*
33379893 AAGTGCCTGAA-ACAACACACG
1 AAGTGCCTGAATACGACACACG
*
33379914 AGGTGCCTG-ATACGACACACG
1 AAGTGCCTGAATACGACACACG
33379935 AAGTGCCTGATATACGACACA
1 AAGTGCCTGA-ATACGACACA
33379956 TAAAGTGTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 1 0.03
21 25 0.69
23 10 0.28
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (22 bp):
AAGTGCCTGAATACGACACACG
Found at i:33381184 original size:26 final size:26
Alignment explanation
Indices: 33381155--33381262 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
33381145 TGATACAAAT
33381155 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
33381181 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
33381207 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
33381233 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
33381259 TGAT
1 TGAT
33381263 GGAAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:33382875 original size:27 final size:27
Alignment explanation
Indices: 33382835--33382975 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
33382825 AGGAAGCGTC
* *
33382835 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
33382862 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
33382888 CCTGGTGGCTATGCTACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
33382916 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
33382943 ATGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
33382970 CTGGTG
1 CTGGTG
33382976 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.11
27 82 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:33382918 original size:54 final size:54
Alignment explanation
Indices: 33382832--33382975 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
33382822 TGGAGGAAGC
*
33382832 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
33382886 GTCCTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
** *
33382940 GTTATGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
33382976 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:33384258 original size:3 final size:3
Alignment explanation
Indices: 33384216--33384247 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
33384206 TAAAAATCTC
33384216 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
33384248 CACTATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:33384408 original size:31 final size:34
Alignment explanation
Indices: 33384373--33384443 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 34
33384363 TCATACAAAA
* *
33384373 ATCTTATAA-T-ATAATTAT-TTAATTAATAAAT
1 ATCTTATAACTAATAATTATAATAAATAATAAAT
*
33384404 ATCTTTTAACTTAATAATTATAATAAATAATAAAT
1 ATCTTATAAC-TAATAATTATAATAAATAATAAAT
33384439 ATCTT
1 ATCTT
33384444 TTTACTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 8 0.24
33 1 0.03
34 8 0.24
35 16 0.48
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (34 bp):
ATCTTATAACTAATAATTATAATAAATAATAAAT
Found at i:33387903 original size:24 final size:22
Alignment explanation
Indices: 33387875--33387934 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 22
33387865 TTTCTGGCGA
33387875 GTTTCAAATATATAACCAATAGTT
1 GTTTCAAA-A-ATAACCAATAGTT
*
33387899 GTTTCTAAAATAACCAATAGTT
1 GTTTCAAAAATAACCAATAGTT
*
33387921 GTTTCTAAAATAAC
1 GTTTCAAAAATAAC
33387935 ACCATCAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 27 0.77
23 1 0.03
24 7 0.20
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (22 bp):
GTTTCAAAAATAACCAATAGTT
Found at i:33387912 original size:22 final size:22
Alignment explanation
Indices: 33387886--33387934 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
33387876 TTTCAAATAT
33387886 ATAACCAATAGTTGTTTCTAAA
1 ATAACCAATAGTTGTTTCTAAA
33387908 ATAACCAATAGTTGTTTCTAAA
1 ATAACCAATAGTTGTTTCTAAA
33387930 ATAAC
1 ATAAC
33387935 ACCATCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (22 bp):
ATAACCAATAGTTGTTTCTAAA
Found at i:33389970 original size:25 final size:25
Alignment explanation
Indices: 33389927--33389985 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
33389917 ATTTCTTTAT
* * *
33389927 TATATTATATATAATAATTTTAAAT
1 TATATTATTTATAATAATTATAAAA
*
33389952 TTTATTATTTATTAA-AATTATAAAA
1 TATATTATTTA-TAATAATTATAAAA
33389977 TATATTATT
1 TATATTATT
33389986 AAATATTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATTATTTATAATAATTATAAAA
Found at i:33391949 original size:21 final size:21
Alignment explanation
Indices: 33391900--33391972 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
33391890 AGGAAATAAC
* *
33391900 ATGTGAACATTATAGGAATTCT
1 ATGTGAACA-CATAGGAATTAT
*
33391922 AATGTGAACACATAGGAGTTAT
1 -ATGTGAACACATAGGAATTAT
* *
33391944 ATGTGAACCCATAGAAATTAT
1 ATGTGAACACATAGGAATTAT
*
33391965 ATATGAAC
1 ATGTGAAC
33391973 CTTAACTACT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 25 0.58
22 9 0.21
23 9 0.21
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (21 bp):
ATGTGAACACATAGGAATTAT
Found at i:33394905 original size:14 final size:15
Alignment explanation
Indices: 33394886--33394915 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
33394876 TTCTTGCTTG
33394886 TTTTATTTTAT-TTT
1 TTTTATTTTATCTTT
33394900 TTTTATTTTATCTTT
1 TTTTATTTTATCTTT
33394915 T
1 T
33394916 ACGTAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTATCTTT
Found at i:33395695 original size:27 final size:26
Alignment explanation
Indices: 33395665--33395727 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
33395655 TATTTCCTCA
33395665 TTTATATATATACATACTTATATATAT
1 TTTATATATATA-ATACTTATATATAT
* **
33395692 TTTATATTTTATAATTTTTATATATAT
1 TTTATA-TATATAATACTTATATATAT
33395719 TTT-TATATA
1 TTTATATATA
33395728 CATATACGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 3 0.10
26 2 0.06
27 21 0.68
28 5 0.16
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTATATATATAATACTTATATATAT
Found at i:33395732 original size:14 final size:12
Alignment explanation
Indices: 33395682--33395727 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
33395672 ATATACATAC
33395682 TTATATATATTT
1 TTATATATATTT
*
33395694 TATATTTTATAATTT
1 T-TA-TATAT-ATTT
33395709 TTATATATATTT
1 TTATATATATTT
33395721 TTATATA
1 TTATATA
33395728 CATATACGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 12 0.41
13 6 0.21
14 6 0.21
15 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATATATATTT
Found at i:33397401 original size:21 final size:21
Alignment explanation
Indices: 33397363--33397403 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
33397353 ATATTTTTTA
*
33397363 TTAAAAAACAAATTAAAAAAC
1 TTAAAAAACAAATAAAAAAAC
**
33397384 TTAAAAAAGTAATAAAAAAA
1 TTAAAAAACAAATAAAAAAA
33397404 ATGTTGGCAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (21 bp):
TTAAAAAACAAATAAAAAAAC
Found at i:33399109 original size:20 final size:20
Alignment explanation
Indices: 33399071--33399109 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
33399061 AATATTTTCT
***
33399071 TCATAAAAATAATTTAAAAA
1 TCATAAAAATAAAAAAAAAA
33399091 TCATAAAAATAAAAAAAAA
1 TCATAAAAATAAAAAAAAA
33399110 TATTAAAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
TCATAAAAATAAAAAAAAAA
Found at i:33399179 original size:20 final size:20
Alignment explanation
Indices: 33399156--33399198 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
33399146 AAACTTATAA
*
33399156 ATATTATAAAATATAAAAAT
1 ATATAATAAAATATAAAAAT
** *
33399176 ATATAATAAGTTATAAAATT
1 ATATAATAAAATATAAAAAT
33399196 ATA
1 ATA
33399199 AAATTTAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
ATATAATAAAATATAAAAAT
Found at i:33399212 original size:19 final size:19
Alignment explanation
Indices: 33399190--33399313 Score: 57
Period size: 19 Copynumber: 6.6 Consensus size: 19
33399180 AATAAGTTAT
33399190 AAAATTATAAAATTTAAAA
1 AAAATTATAAAATTTAAAA
*
33399209 AAAATTATTAGAAATCTTGAAA
1 AAAATTA-TA-AAAT-TTAAAA
** *
33399231 GTAA-TA-AAAATGT-AAA
1 AAAATTATAAAATTTAAAA
**
33399247 AAAA-TATAAAA---AATT
1 AAAATTATAAAATTTAAAA
* *
33399262 AAAATTATTAAAA-TTATAT
1 AAAATTA-TAAAATTTAAAA
*
33399281 AAACTTATAAAAATTATAAAA
1 AAAATTAT-AAAATT-TAAAA
33399302 AAAATTATAAAA
1 AAAATTATAAAA
33399314 ACTTGAACTG
Statistics
Matches: 79, Mismatches: 14, Indels: 23
0.68 0.12 0.20
Matches are distributed among these distances:
15 5 0.06
16 9 0.11
17 10 0.13
18 5 0.06
19 20 0.25
20 7 0.09
21 16 0.20
22 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAATTATAAAATTTAAAA
Found at i:33399306 original size:12 final size:12
Alignment explanation
Indices: 33399289--33399314 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33399279 ATAAACTTAT
33399289 AAAAATTATAAA
1 AAAAATTATAAA
33399301 AAAAATTATAAA
1 AAAAATTATAAA
33399313 AA
1 AA
33399315 CTTGAACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATTATAAA
Found at i:33399313 original size:8 final size:8
Alignment explanation
Indices: 33399145--33399208 Score: 60
Period size: 8 Copynumber: 7.5 Consensus size: 8
33399135 AAATCATAAA
33399145 AAAACTTAT
1 AAAA-TTAT
33399154 AAATATTAT
1 AAA-ATTAT
33399163 AAAA-TAT
1 AAAATTAT
33399170 AAAAATATAT
1 -AAAAT-TAT
33399180 AATAAGTTAT
1 AA-AA-TTAT
33399190 AAAATTAT
1 AAAATTAT
33399198 AAAATT-T
1 AAAATTAT
33399205 AAAA
1 AAAA
33399209 AAAATTATTA
Statistics
Matches: 49, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
7 8 0.16
8 15 0.31
9 14 0.29
10 11 0.22
11 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (8 bp):
AAAATTAT
Found at i:33399314 original size:9 final size:9
Alignment explanation
Indices: 33399144--33399302 Score: 89
Period size: 9 Copynumber: 17.6 Consensus size: 9
33399134 AAAATCATAA
33399144 AAAAACTTAT
1 AAAAA-TTAT
*
33399154 AAATATTAT
1 AAAAATTAT
33399163 -AAAA-TAT
1 AAAAATTAT
33399170 AAAAATATAT
1 AAAAAT-TAT
*
33399180 AATAAGTTAT
1 AA-AAATTAT
33399190 -AAAATTAT
1 AAAAATTAT
* *
33399198 AAAATTTAAA
1 AAAAATT-AT
33399208 AAAAATTATT
1 AAAAATTA-T
*
33399218 AGAAATCT-T
1 AAAAAT-TAT
* * *
33399227 GAAAGTAAT
1 AAAAATTAT
33399236 AAAAATGTA-
1 AAAAAT-TAT
*
33399245 AAAAAATAT
1 AAAAATTAT
33399254 AAAAA--AT
1 AAAAATTAT
*
33399261 TAAAATTAT
1 AAAAATTAT
*
33399270 TAAAATTAT
1 AAAAATTAT
*
33399279 ATAAACTTAT
1 A-AAAATTAT
33399289 AAAAATTAT
1 AAAAATTAT
33399298 AAAAA
1 AAAAA
33399303 AAATTATAAA
Statistics
Matches: 114, Mismatches: 21, Indels: 29
0.70 0.13 0.18
Matches are distributed among these distances:
7 9 0.08
8 15 0.13
9 53 0.46
10 33 0.29
11 4 0.04
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:33399799 original size:10 final size:10
Alignment explanation
Indices: 33399784--33399818 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
33399774 TAATTTTAAT
33399784 ATTTTTGAGA
1 ATTTTTGAGA
33399794 ATTTTTGAGA
1 ATTTTTGAGA
*
33399804 ATTTTTCAG-
1 ATTTTTGAGA
33399813 ATTTTT
1 ATTTTT
33399819 TCTTTTGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.26, C:0.03, G:0.14, T:0.57
Consensus pattern (10 bp):
ATTTTTGAGA
Found at i:33408826 original size:16 final size:15
Alignment explanation
Indices: 33408807--33408857 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
33408797 TTCATATTGG
33408807 TAATTTTTAATTTGAA
1 TAATTTTTAATTT-AA
*
33408823 TAA-TTTTAATTTAG
1 TAATTTTTAATTTAA
* *
33408837 TTATTTTTTATTTAAA
1 TAATTTTTAATTT-AA
33408853 TAATT
1 TAATT
33408858 CTCCTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 3 0.11
15 17 0.61
16 8 0.29
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
TAATTTTTAATTTAA
Found at i:33409394 original size:47 final size:47
Alignment explanation
Indices: 33409325--33409418 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
33409315 GGTTAAAGTC
*
33409325 TACCAAAATATTATTGAAGGGACTCTTGAAGAAGCTTAGTTGACTTG
1 TACCAAAATATTATTGAAGGGACTCTTGAAGAAGCTTAGTCGACTTG
33409372 TACCAAAATATTATTGAAGGGACTCTTGAAGAAGCTTAGTCGACTTG
1 TACCAAAATATTATTGAAGGGACTCTTGAAGAAGCTTAGTCGACTTG
33409419 CAAAATATAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (47 bp):
TACCAAAATATTATTGAAGGGACTCTTGAAGAAGCTTAGTCGACTTG
Found at i:33411615 original size:15 final size:16
Alignment explanation
Indices: 33411581--33411619 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
33411571 AAATTAAACA
*
33411581 TTTTATTGAGATAATAT
1 TTTTATTAAGAT-ATAT
33411598 TTTTATTAAGAT-TAT
1 TTTTATTAAGATATAT
33411613 TTTTATT
1 TTTTATT
33411620 TAGTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.48
17 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (16 bp):
TTTTATTAAGATATAT
Found at i:33417998 original size:13 final size:13
Alignment explanation
Indices: 33417980--33418010 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
33417970 AATAAATATT
33417980 ATTGATACATACA
1 ATTGATACATACA
*
33417993 ATTGATATATACA
1 ATTGATACATACA
33418006 ATTGA
1 ATTGA
33418011 AAGAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (13 bp):
ATTGATACATACA
Found at i:33418819 original size:2 final size:2
Alignment explanation
Indices: 33418812--33418841 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
33418802 GTAATGTAAA
33418812 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33418842 TTGACTCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33421906 original size:36 final size:36
Alignment explanation
Indices: 33421855--33421926 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
33421845 TTTTCAACAC
**
33421855 TTAATTTTTTCAGTTTATCAAACACATTCTAAAACT
1 TTAATTTTTTCAGTTTATCAAACACACCCTAAAACT
*
33421891 TTAATTTTTTTAGTTTATCAAACACACCCTAAAACT
1 TTAATTTTTTCAGTTTATCAAACACACCCTAAAACT
33421927 CTTGTCAAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.43
Consensus pattern (36 bp):
TTAATTTTTTCAGTTTATCAAACACACCCTAAAACT
Found at i:33422246 original size:31 final size:31
Alignment explanation
Indices: 33422210--33422268 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
33422200 ATTTGGTTAG
**
33422210 TGAACTATTTGCAAG-TTTTCATTTAAATCAC
1 TGAACTATTTAAAAGTTTTTC-TTTAAATCAC
33422241 TGAACTATTTAAAAGTTTTTCTTTAAAT
1 TGAACTATTTAAAAGTTTTTCTTTAAAT
33422269 TATTGGATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (31 bp):
TGAACTATTTAAAAGTTTTTCTTTAAATCAC
Found at i:33428753 original size:17 final size:17
Alignment explanation
Indices: 33428731--33428777 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
33428721 TATTCTAATT
33428731 TTATAAATTAAAAATAA
1 TTATAAATTAAAAATAA
*
33428748 TTATAAA-GAAAAATAA
1 TTATAAATTAAAAATAA
*
33428764 TT-T-TATTAAAAATA
1 TTATAAATTAAAAATA
33428778 TATCAATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 1 0.04
15 8 0.31
16 10 0.38
17 7 0.27
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
TTATAAATTAAAAATAA
Found at i:33428785 original size:23 final size:21
Alignment explanation
Indices: 33428758--33428819 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 21
33428748 TTATAAAGAA
33428758 AAATAATTTTATTAAAAATATAT
1 AAATAATTTTA-TAAAAAT-TAT
*
33428781 CAATATATTTGTA-AAAAATTAT
1 AAATA-ATTT-TATAAAAATTAT
*
33428803 AAATAGTTTTAATAAAA
1 AAATAATTTT-ATAAAA
33428820 TAATATTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 1 0.03
21 4 0.12
22 11 0.34
23 10 0.31
24 4 0.12
25 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (21 bp):
AAATAATTTTATAAAAATTAT
Found at i:33436059 original size:3 final size:3
Alignment explanation
Indices: 33436051--33436102 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
33436041 CTTTCAACTT
33436051 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33436099 TTA T
1 TTA T
33436103 CTTCCAACTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33436433 original size:5 final size:5
Alignment explanation
Indices: 33436423--33436447 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
33436413 TACCCAGTAT
33436423 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
33436448 TGACAAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:33440065 original size:24 final size:24
Alignment explanation
Indices: 33440012--33440154 Score: 157
Period size: 23 Copynumber: 6.0 Consensus size: 24
33440002 GCTTTATCAT
*
33440012 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
33440037 GTAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
33440061 ATAACTAGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTA
* *
33440086 ACAACTGGGGCATAATCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33440109 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33440132 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
33440155 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
23 41 0.41
24 30 0.30
25 28 0.28
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:33440125 original size:48 final size:46
Alignment explanation
Indices: 33440039--33440153 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 46
33440029 CTCTTTTAGT
* * *
33440039 AACTGGGGCAAAAGCCCTTTTTATAACTAGGGCATAAGCCCTTCATCAC
1 AACTGGGGCATAAGCCC-TTTAATAACTAGGGCATAAGCCCTT--TAAC
* * *
33440088 AACTGGGGCATAATCCCTTTAATAACTGGGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAATAACTAGGGCATAAGCCCTTTAAC
33440134 AACTGGGGCATAAGCCCTTT
1 AACTGGGGCATAAGCCCTTT
33440154 TGCACTTCCT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 21 0.36
48 23 0.39
49 15 0.25
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (46 bp):
AACTGGGGCATAAGCCCTTTAATAACTAGGGCATAAGCCCTTTAAC
Found at i:33440226 original size:9 final size:9
Alignment explanation
Indices: 33440212--33440268 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
33440202 ATCTCATGTG
33440212 CATATCATA
1 CATATCATA
*
33440221 CATATCATGTG
1 CATATCA--TA
33440232 CATATCATA
1 CATATCATA
* *
33440241 CATGTCATGTG
1 CATATCA--TA
33440252 CATATCATA
1 CATATCATA
33440261 CATATCAT
1 CATATCAT
33440269 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:33440230 original size:20 final size:20
Alignment explanation
Indices: 33440205--33440270 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
33440195 TATGAATATC
33440205 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
33440225 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
33440245 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
33440265 TCATGT
1 TCATGT
33440271 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:33440235 original size:11 final size:11
Alignment explanation
Indices: 33440205--33440259 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
33440195 TATGAATATC
33440205 TCATGTGCATA
1 TCATGTGCATA
*
33440216 TCA--TACATA
1 TCATGTGCATA
33440225 TCATGTGCATA
1 TCATGTGCATA
* *
33440236 TCA--TACATG
1 TCATGTGCATA
33440245 TCATGTGCATA
1 TCATGTGCATA
33440256 TCAT
1 TCAT
33440260 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:33441575 original size:27 final size:27
Alignment explanation
Indices: 33441516--33441590 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
33441506 CATATTCGTT
33441516 ATTTTACCATACAGGGGTATTACGGTC
1 ATTTTACCATACAGGGGTATTACGGTC
* *
33441543 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAGGGG-TATTACGGTC
* *
33441570 TTTTTACC-TGATAGGGGTATT
1 ATTTTACCAT-ACAGGGGTATT
33441591 TTAGTCATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 2 0.05
27 37 0.93
28 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (27 bp):
ATTTTACCATACAGGGGTATTACGGTC
Found at i:33441661 original size:27 final size:27
Alignment explanation
Indices: 33441608--33441887 Score: 146
Period size: 27 Copynumber: 10.3 Consensus size: 27
33441598 TTTCATCCTA
* * * * *
33441608 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
33441635 CGAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
33441662 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * * *
33441691 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
33441718 TAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
33441745 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
33441772 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
33441799 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * ** * *
33441826 TAATGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *** * * *
33441853 CGAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
33441880 CAAGGGTA
1 CAAGGGTA
33441888 AAATAGTAAT
Statistics
Matches: 197, Mismatches: 54, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
27 169 0.86
28 13 0.07
29 15 0.08
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:33441779 original size:54 final size:54
Alignment explanation
Indices: 33441721--33441860 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
33441711 TGTAAATTAG
33441721 GGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * * * *
33441775 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTATAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* * * *
33441829 TGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTATAAATTGAGGGTA
33441861 AAACAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:33441834 original size:81 final size:82
Alignment explanation
Indices: 33441608--33441845 Score: 223
Period size: 81 Copynumber: 2.9 Consensus size: 82
33441598 TTTCATCCTA
* * * ** * *
33441608 CAAGGGTGTTTTGGTAAATCTACAAAC-CGAGGGTATTTCAGTAATTTTGTAAACCAATGGTATT
1 CAAGGGTATTTTGGTAAATTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACTAATGGTATT
* *
33441672 TCTA-TAATTTTTAAAAAGT
65 TC-AGTAA-TTTCAAAAAGC
* ** * * * *
33441691 CAAGGGTATTTCT-GTAACTTTGTAAATTAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATT
1 CAAGGGTATTT-TGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAATGGTATT
* *
33441755 TCGGTAATTTCACAAA-C
65 TCAGTAATTTCAAAAAGC
* *
33441772 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAATGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAATGGTATTT
*
33441837 TAGTAATTT
66 CAGTAATTT
33441846 TGTAAATCGA
Statistics
Matches: 123, Mismatches: 28, Indels: 10
0.76 0.17 0.06
Matches are distributed among these distances:
80 1 0.01
81 62 0.50
82 7 0.06
83 51 0.41
84 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (82 bp):
CAAGGGTATTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAATGGTATTT
CAGTAATTTCAAAAAGC
Found at i:33441973 original size:54 final size:54
Alignment explanation
Indices: 33441839--33442041 Score: 262
Period size: 54 Copynumber: 3.8 Consensus size: 54
33441829 TGGTATTTTA
* * * **
33441839 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
*
33441893 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * * * *
33441947 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAGAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * * * *
33442001 ATAATTATGTAAATCGGGGGTAAAATGGTAATTTTGTAAAT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT
33442042 TGGGGGTACT
Statistics
Matches: 130, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 130 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
Found at i:33442049 original size:27 final size:27
Alignment explanation
Indices: 33441839--33442041 Score: 237
Period size: 27 Copynumber: 7.5 Consensus size: 27
33441829 TGGTATTTTA
* *
33441839 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
33441866 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
33441893 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
33441920 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
33441947 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
33441974 ATAATTATGTAAATC-AGGGGTAGAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * * *
33442001 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
33442028 GTAATTTTGTAAAT
1 GTAATTCTGTAAAT
33442042 TGGGGGTACT
Statistics
Matches: 154, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 153 0.99
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:33442076 original size:27 final size:27
Alignment explanation
Indices: 33442055--33442144 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 27
33442045 GGGTACTTTG
*
33442055 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
33442082 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
33442109 GTATTTTTACAAA-CTAAGGGTATTTC-
1 GTAATTTTACAAATCGAA-GGTATTTCA
33442135 GATAATTTTA
1 G-TAATTTTA
33442145 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:33445153 original size:23 final size:24
Alignment explanation
Indices: 33445107--33445161 Score: 94
Period size: 23 Copynumber: 2.3 Consensus size: 24
33445097 CAGCAACTAA
33445107 TAAATTTGTCCCAACTAAGACACAT
1 TAAA-TTGTCCCAACTAAGACACAT
33445132 TAAATTGTCCCAAC-AAGACACAT
1 TAAATTGTCCCAACTAAGACACAT
33445155 TAAATTG
1 TAAATTG
33445162 ATGCATGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 16 0.53
24 10 0.33
25 4 0.13
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (24 bp):
TAAATTGTCCCAACTAAGACACAT
Found at i:33448912 original size:19 final size:19
Alignment explanation
Indices: 33448877--33448933 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 19
33448867 AAGGAAAATC
*
33448877 AAAATAATTTTAAAAAATTT
1 AAAATAATTTT-TAAAATTT
*
33448897 AAAATAATTTTTAAAATTC
1 AAAATAATTTTTAAAATTT
*
33448916 AAAAT-ATTTATAAAATTT
1 AAAATAATTTTTAAAATTT
33448934 CCAAAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.33
19 11 0.33
20 11 0.33
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTT
Found at i:33448929 original size:18 final size:19
Alignment explanation
Indices: 33448871--33448932 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
33448861 ATTACAAAGG
*
33448871 AAAA-TCAAAATAATTTTAA
1 AAAATTCAAAATAA-TTTAT
* *
33448890 AAAATTTAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
33448909 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
33448927 AAAATT
1 AAAATT
33448933 TCCAAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
18 11 0.30
19 18 0.49
20 8 0.22
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:33448942 original size:18 final size:17
Alignment explanation
Indices: 33448902--33448945 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
33448892 AATTTAAAAT
*
33448902 AATTTTTAAAATTCAAA
1 AATTTATAAAATTCAAA
*
33448919 ATATTTATAAAATTTCCAA
1 A-ATTTATAAAA-TTCAAA
33448938 AATTTATA
1 AATTTATA
33448946 TTTTTTAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 16 0.70
19 6 0.26
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTTATAAAATTCAAA
Found at i:33449143 original size:16 final size:17
Alignment explanation
Indices: 33449113--33449145 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
33449103 CTTTAAAAAA
33449113 GTTTTCAAATATATATG
1 GTTTTCAAATATATATG
*
33449130 GTTTT-AAATTTATATG
1 GTTTTCAAATATATATG
33449146 CTCTAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (17 bp):
GTTTTCAAATATATATG
Found at i:33452415 original size:24 final size:24
Alignment explanation
Indices: 33452369--33452415 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
33452359 AATAAAAGAG
*
33452369 AAGAGAACTAAAGAAAAAGATTGA
1 AAGAGAAATAAAGAAAAAGATTGA
33452393 AAGAGAAAATAAAGAAAAA-ATTG
1 AAGAG-AAATAAAGAAAAAGATTG
33452416 GGATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.66, C:0.02, G:0.19, T:0.13
Consensus pattern (24 bp):
AAGAGAAATAAAGAAAAAGATTGA
Found at i:33452604 original size:17 final size:17
Alignment explanation
Indices: 33452582--33452621 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
33452572 TGTTTAGCAA
*
33452582 TGCTTTGGAGTGAAAAG
1 TGCTTTGGAGGGAAAAG
*
33452599 TGCTTTTTGAGGGAAAAG
1 TGC-TTTGGAGGGAAAAG
33452617 TGCTT
1 TGCTT
33452622 CTCAAAAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.25, C:0.07, G:0.33, T:0.35
Consensus pattern (17 bp):
TGCTTTGGAGGGAAAAG
Found at i:33460732 original size:33 final size:32
Alignment explanation
Indices: 33460695--33460767 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 32
33460685 ACATACATAG
33460695 ATTATAAA-A-TAGATAATATAGTCATGTATATAT
1 ATTATAAATATTAGA-AATATA-T-ATGTATATAT
*
33460728 ATTATTAAATATTAGACATATATATGTATATAT
1 ATTA-TAAATATTAGAAATATATATGTATATAT
33460761 ATATATA
1 AT-TATA
33460768 GTAAGATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
33 18 0.51
34 7 0.20
35 6 0.17
36 4 0.11
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (32 bp):
ATTATAAATATTAGAAATATATATGTATATAT
Found at i:33462598 original size:44 final size:43
Alignment explanation
Indices: 33462549--33462961 Score: 232
Period size: 44 Copynumber: 9.5 Consensus size: 43
33462539 ATCTACTCTG
* * * *
33462549 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTT-CTTCAATCTGCTCCA
* * ** * * *
33462593 CTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
* **
33462636 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATC-CTTTCTTCAATCTGCTCCA
* ** *
33462680 CTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTCCGGTCTACTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT----TTCTTCAATCTGCTCCA
* * * * * * *
33462726 CTATAACCTCAGGGAAATAAGA-CCTGAT-GT-GATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCCT-TTCTTCAATCTGCTCCA
* * *
33462767 CTGTAACTTCAGAGAGATAAGATCC--T-TT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
* * * * * * ** *
33462806 TTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGA-TCCTTTCTTCAATCTGCTCCA
* ** *
33462850 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATC-CTTTCTTCAATCTGCTCCA
*** *
33462894 CTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTTGGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT----TTCTTCAATCTGCTCCA
*
33462940 CTGTAATCTCAGGGAGATAAGA
1 CTGTAACCTCAGGGAGATAAGA
33462962 CCTGTATAAT
Statistics
Matches: 281, Mismatches: 71, Indels: 32
0.73 0.18 0.08
Matches are distributed among these distances:
39 25 0.09
40 2 0.01
41 26 0.09
42 7 0.02
43 34 0.12
44 123 0.44
46 64 0.23
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
Found at i:33462653 original size:87 final size:87
Alignment explanation
Indices: 33462537--33462698 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
33462527 AGACTTGATG
* * * * *
33462537 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTC-TGACTTCAATCCGCTCCACTGTAACC
33462601 TCAGGGAGATAGGATAGTGTCTT
65 TCAGGGAGATAGGATAGTGTCTT
* * * * *
33462624 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
33462689 CAGGGAGATA
66 CAGGGAGATA
33462699 AGATCTGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (87 bp):
CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
CAGGGAGATAGGATAGTGTCTT
Found at i:33462889 original size:214 final size:214
Alignment explanation
Indices: 33462516--33462965 Score: 670
Period size: 214 Copynumber: 2.1 Consensus size: 214
33462506 CACTGCATCT
* *
33462516 TCAGGGAAATAAGACTTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTT
1 TCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCC----TTT
* * *
33462581 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
62 TAATCCGCTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGCTCCGCTGTAATCTC
33462646 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
127 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
33462711 CTCCGGTCTACTCCACTATAACC
192 CTCCGGTCTACTCCACTATAACC
* * *
33462734 TCAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCC-TTTAAT
1 TCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTTAAT
* *
33462798 CCGCTCCATTGTAA-TCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAG
66 CCGCTCCACTGTAACT-TCAAGGAGATAGGA-TACTATCTTCGATCTGCTCCGCTGTAATCTCAG
*
33462862 GGAGATAAGATCTCTGGCTTCAATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATTCT
129 GGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT
** ** * *
33462927 TTGGTCTGTTCCACTGTAATC
194 CCGGTCTACTCCACTATAACC
*
33462948 TCAGGGAGATAAGACCTG
1 TCAGGGAAATAAGACCTG
33462966 TATAATAAAC
Statistics
Matches: 212, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
212 1 0.00
213 32 0.15
214 126 0.59
218 53 0.25
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (214 bp):
TCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTTAAT
CCGCTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGCTCCGCTGTAATCTCAGGG
AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCC
GGTCTACTCCACTATAACC
Done.