Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 106 of 325
Found at i:34013934 original size:3 final size:3
Alignment explanation
Indices: 34013928--34014058 Score: 106
Period size: 3 Copynumber: 42.3 Consensus size: 3
34013918 GTAAAATAAG
* *
34013928 ATA ATA ATA ATA ATA ATA ATA A-A AGTA ATA AAA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * *
34013973 ATA AGA ATA TTTA ATA ATA ATA ATA ACA ATA AT- ATAA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* * *
34014019 TATA CATGA AAA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A
1 -ATA -AT-A ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A
34014059 ATTTAACTAA
Statistics
Matches: 102, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
2 6 0.06
3 81 0.79
4 14 0.14
5 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:34018533 original size:19 final size:20
Alignment explanation
Indices: 34018495--34018548 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
34018485 AACGCCTCTT
34018495 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCATTCA
34018514 TTTGCATTACATTTCA-TCA
1 TTTGCATTACATTTCATTCA
* * *
34018533 TATGCGTTAAATTTCA
1 TTTGCATTACATTTCA
34018549 CAAAAAGACC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 24 0.77
20 7 0.23
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (20 bp):
TTTGCATTACATTTCATTCA
Found at i:34019009 original size:83 final size:83
Alignment explanation
Indices: 34018862--34019018 Score: 233
Period size: 83 Copynumber: 1.9 Consensus size: 83
34018852 GGAATGACAA
*** * *
34018862 TGAAGATCCTCTCTACCCCCTGGTTTCACCCCGGTAAATATTCAAACGCAACACGAGATGCACAC
1 TGAAGATCCTCTCTACCCCCTGGTTTCACCCCAACAAATATTCAAACGCAACACAAGATACACAC
34018927 GCAAAGGTCATCCATTTC
66 GCAAAGGTCATCCATTTC
* * *
34018945 TGAAGATCCTCTCTACCCCCTGGTTTTACCCCAACAAATGTTCAAACGCAACCCAAGATACACAC
1 TGAAGATCCTCTCTACCCCCTGGTTTCACCCCAACAAATATTCAAACGCAACACAAGATACACAC
*
34019010 GCGAAGGTC
66 GCAAAGGTC
34019019 GTCTATTACA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (83 bp):
TGAAGATCCTCTCTACCCCCTGGTTTCACCCCAACAAATATTCAAACGCAACACAAGATACACAC
GCAAAGGTCATCCATTTC
Found at i:34026984 original size:133 final size:132
Alignment explanation
Indices: 34026746--34027183 Score: 488
Period size: 133 Copynumber: 3.3 Consensus size: 132
34026736 ATGAATTTAC
* * * *
34026746 AGATCTTATCTCCATGAGGCAGCAATGGAGCAGATCGAAGACGGAGAATCTTATC-TCTTTGAAG
1 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGAC-GAGAATCTTATCTTC-CTGAAG
* *
34026810 TAGTAAGGGAGCAGATTTAAGCCACTAGCCTTATCTCCCTGAGCAGCAGTAGAGCAAGCTGAAGA
64 TAGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTGAGCAGCAGTAGAGCAAGCTGAAGA
34026875 TTGT
129 TTGT
* * *
34026879 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGATGATAAATCTTATCTTCCTGAGGT
1 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGA-GAATCTTATCTTCCTGAAGT
* * * * * * *
34026944 AGCAATGGATCATATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGAT
65 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTGAGCAGCAGTAGAGCAAGCTGAAGAT
34027009 TGT
130 TGT
* * *
34027012 AGATCTTATCTCTATAAGGTAGTAATGGAGCAAATCGAGGACGACGAATCTTATCTTCCTGAAGT
1 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGA-GAATCTTATCTTCCTGAAGT
* * * * * * **
34027077 AGCAAGGCAGCAGATTGAAACCACAAGTCTTATCTCTCTGAAGTTGCAGT-GAAGC-AGACTGAA
65 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTG-AGCAGCAGTAG-AGCAAG-CTGAA
* *
34027140 GATAGC
127 GATTGT
* * *
34027146 AGATCTTATCTCCCTTAA-GTTGCAGTGGAGCAGATCGA
1 AGATCTTATCT-CCATAAGGTAGCAATGGAGCAGATCGA
34027184 AGCCACAATC
Statistics
Matches: 254, Mismatches: 45, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
132 2 0.01
133 201 0.79
134 47 0.19
135 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGAGAATCTTATCTTCCTGAAGTA
GCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTGAGCAGCAGTAGAGCAAGCTGAAGATT
GT
Found at i:34027133 original size:44 final size:44
Alignment explanation
Indices: 34027060--34027215 Score: 142
Period size: 44 Copynumber: 3.5 Consensus size: 44
34027050 GGACGACGAA
* *
34027060 TCTTATCT-TCCTGAAGTAGCAAG-GCAGCAGATTGAAACCACAAG
1 TCTTATCTCT-CTGAAGTTGC-AGTGAAGCAGATTGAAACCACAAG
* *
34027104 TCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGA-TAGC-AG
1 TCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGAA-ACCA-CAAG
* * * * *
34027148 ATCTTATCTCCCTTAAGTTGCAGTGGAGCAGATCGAAGCCACAA-
1 -TCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGAAACCACAAG
34027192 TCCTTATCTCTCTGAAGTTGCAGT
1 T-CTTATCTCTCTGAAGTTGCAGT
34027216 AGAGTAGTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
43 3 0.03
44 52 0.57
45 36 0.40
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGAAACCACAAG
Found at i:34027264 original size:89 final size:89
Alignment explanation
Indices: 34027085--34027265 Score: 192
Period size: 89 Copynumber: 2.0 Consensus size: 89
34027075 GTAGCAAGGC
* * *
34027085 AGCAGATTGAAACCACAAGTCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAGAT
1 AGCAGATCGAAACCACAAGTCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTAAAGATAGCAAAT
* * *
34027150 CTTATCTCCCTTAAGTTGCAGTGG
66 CTTATCTCCCTGAAATTACAGTGG
* * *
34027174 AGCAGATCGAAGCCACAA-TCCTTATCTCTCTGAAGTTGCAGT-AGAGTAGTA-TAAA-AGTCGC
1 AGCAGATCGAAACCACAAGT-CTTATCTCTCTGAAGTTGCAGTGA-AGCAG-ACTAAAGA-TAGC
*
34027235 AAATCTCT-TCTCCCTGAAATTACATTGG
62 AAATCT-TATCTCCCTGAAATTACAGTGG
34027263 AGC
1 AGC
34027266 GGGTTGAAGC
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
88 3 0.04
89 72 0.94
90 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (89 bp):
AGCAGATCGAAACCACAAGTCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTAAAGATAGCAAAT
CTTATCTCCCTGAAATTACAGTGG
Found at i:34032871 original size:33 final size:33
Alignment explanation
Indices: 34032833--34032899 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
34032823 TAAATATTGT
*
34032833 TAATCGTATTTGATTAAGTTTGTCTGAGAAATC
1 TAATCGTATTTGATTAAGTTTGTATGAGAAATC
*
34032866 TAATCGTATTTGGTTAAGTTTGTATGAGAAATC
1 TAATCGTATTTGATTAAGTTTGTATGAGAAATC
34032899 T
1 T
34032900 TACTTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (33 bp):
TAATCGTATTTGATTAAGTTTGTATGAGAAATC
Found at i:34048073 original size:50 final size:50
Alignment explanation
Indices: 34048012--34048587 Score: 339
Period size: 49 Copynumber: 11.6 Consensus size: 50
34048002 ACAGCGGAAC
* *
34048012 AGATTGAAGCTACAATAGCGGATCTTACTTCCCCGACATTGCAATTCAAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * * * * ** *
34048062 ATATTGAAGCTACAACGGTGAATCTTACTT--TCGAGCGA-TGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGA-C-ATTGCAATTCAAA
* * * * *
34048111 AGATTGAAGCTACAACAACGAATCTCACTTCCTCGATATCGCAATTCAAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * * ** *
34048161 AGATTGAAGCCACAACGGCGAATCTTACTT--CCGAGCGA-TGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGA-C-ATTGCAATTCAAA
* * * *
34048210 AGATTGAAGCTACAACAACGAATCTCACTTCCCCGATATCGCAATTCAAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * ** ** * ** *
34048260 AGATTGAAGCCACAACGGCGAATCTTACTTCCAAGTGA-TGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * * *
34048309 AGATTGAAGCTACAACAGCGAATCTCACTTCCTCGATATCGCAATTCAAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * * * * * ** *
34048359 AGATTAAAGCCACAACGGTGAATCTTAC-T-CCCGA-GTGATGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACAT--TGCAATTCAAA
* * * * * * *
34048408 GGATTGAAGCTACAACAGCAAATCTCACCTCCCTGACATTGTAATTTAAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* ** ** ** * ** *
34048458 AGATTGAAGCCACAATGGCGAATCTTACTTCCAAGTGA-TGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * **
34048507 GGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGC-AGCCAAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
* * * * *
34048556 AGATCGAAGCCACAACGGTGAATCTTATTTCC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCC
34048588 TCGGCGAGAC
Statistics
Matches: 379, Mismatches: 130, Indels: 35
0.70 0.24 0.06
Matches are distributed among these distances:
47 1 0.00
48 10 0.03
49 194 0.51
50 161 0.42
51 12 0.03
52 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTCAAA
Found at i:34048178 original size:99 final size:99
Alignment explanation
Indices: 34048007--34048587 Score: 822
Period size: 99 Copynumber: 5.9 Consensus size: 99
34047997 TACTGACAGC
* * * * *
34048007 GGAACAGATTGAAGCTACAATAGCGGATCTTACTTCCCCGACATTGCAATTCAAAATATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
* * * *
34048072 TACAACGGTGAATCTTACTTTCGAGCGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGTGATGCAGT
* * *
34048106 GGAACAGATTGAAGCTACAACAACGAATCTCACTTCCTCGATATCGCAATTCAAAAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
*
34048171 CACAACGGCGAATCTTACTTCCGAGCGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGTGATGCAGT
* *
34048205 GGAACAGATTGAAGCTACAACAACGAATCTCACTTCCCCGATATCGCAATTCAAAAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
*
34048270 CACAACGGCGAATCTTACTTCCAAGTGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGTGATGCAGT
* * *
34048304 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCTCGATATCGCAATTCAAAAGATTAAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
* *
34048369 CACAACGGTGAATCTTACTCCCGAGTGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGTGATGCAGT
* * * * * * *
34048403 GGAACGGATTGAAGCTACAACAGCAAATCTCACCTCCCTGACATTGTAATTTAAAAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
* *
34048468 CACAATGGCGAATCTTACTTCCAAGTGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGTGATGCAGT
* * ** *
34048502 GGAACGGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGC-AGCCAAAAGATCGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
* *
34048566 CACAACGGTGAATCTTATTTCC
66 CACAACGGCGAATCTTACTTCC
34048588 TCGGCGAGAC
Statistics
Matches: 437, Mismatches: 45, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
98 32 0.07
99 405 0.93
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (99 bp):
GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATCGCAATTCAAAAGATTGAAGC
CACAACGGCGAATCTTACTTCCGAGTGATGCAGT
Found at i:34066204 original size:21 final size:21
Alignment explanation
Indices: 34066165--34066211 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
34066155 GGTAAAAAAT
34066165 GCCCGTGTGGAGGGAGGCACAC
1 GCCCGTGTGGA-GGAGGCACAC
*
34066187 GCCCGTGTGGCA-GAGGCACAT
1 GCCCGTGTGG-AGGAGGCACAC
34066208 GCCC
1 GCCC
34066212 ATATGAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.52
22 10 0.43
23 1 0.04
ACGTcount: A:0.17, C:0.32, G:0.40, T:0.11
Consensus pattern (21 bp):
GCCCGTGTGGAGGAGGCACAC
Found at i:34073538 original size:18 final size:17
Alignment explanation
Indices: 34073506--34073539 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34073496 ATTATTTTAT
*
34073506 GTTAAAATTTATCAATC
1 GTTAAAATATATCAATC
34073523 GTTAAATATATATCAAT
1 GTTAAA-ATATATCAAT
34073540 ATAGATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (17 bp):
GTTAAAATATATCAATC
Found at i:34080136 original size:131 final size:128
Alignment explanation
Indices: 34080001--34080350 Score: 348
Period size: 130 Copynumber: 2.7 Consensus size: 128
34079991 TTGATAATTC
* * * *
34080001 GAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTT
1 GAGAATCATGCCCTATCGTGCTAGGTTGAGATTTTTCATTTGTTCAAAACAATCGAATATCCCTT
** *
34080066 TATATTCTCACTCATGTTTAT-TAAAAACACTTT-AAAACGAAGACGATGTTCAATGTTTGGCGA
66 TA-ATT-TCACTCACATTT-TCT-AAAA-ACTTTCAAAACGAAGACGATATTCAATGTTTGGCGA
34080129 TTT
126 TTT
* * * * * *
34080132 GAGAATCGTGCCCTATCGTGCTAGGTT-ACACTTTTTCATTGGTTCGAAACAATTGAAGATCCCT
1 GAGAATCATGCCCTATCGTGCTAGGTTGAGA-TTTTTCATTTGTTCAAAACAATCGAATATCCCT
* * * * *
34080196 TCGGAATTTCACTCACATTTTCTAAAATCTTTCAAAATGAAGGCGATATTCGATGTTTGGCGATT
65 T--TAATTTCACTCACATTTTCTAAAAACTTTCAAAACGAAGACGATATTCAATGTTTGGCGATT
34080261 T
128 T
* * * **
34080262 GAGAATCGA-GCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAATTAATCGAATATCCCT
1 GAGAATC-ATGCCCTATCGTGCTAGGTTGAGATTTTTCATTTGTTCAAAACAATCGAATATCCCT
**
34080326 TTGGAATTTCACTCGTATTTTCTAA
65 TT--AATTTCACTCACATTTTCTAA
34080351 GGTGAGGCAA
Statistics
Matches: 178, Mismatches: 32, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
129 4 0.02
130 106 0.60
131 64 0.36
132 3 0.02
133 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (128 bp):
GAGAATCATGCCCTATCGTGCTAGGTTGAGATTTTTCATTTGTTCAAAACAATCGAATATCCCTT
TAATTTCACTCACATTTTCTAAAAACTTTCAAAACGAAGACGATATTCAATGTTTGGCGATTT
Found at i:34080296 original size:130 final size:129
Alignment explanation
Indices: 34080095--34080350 Score: 352
Period size: 130 Copynumber: 2.0 Consensus size: 129
34080085 ATTAAAAACA
* *
34080095 CTTTAAAACGAAGACGATGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTAGGTTA
1 CTTTAAAACGAAGACGATATTCAATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTAGGTTA
*
34080160 CACTTTTTCATTGGTTCGAAA-CAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAAT
66 CACTTTTTCATTGGTTC-AAATCAATCGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAAT
* * * *
34080224 CTTTCAAAATGAAGGCGATATTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTT
1 CTTT-AAAACGAAGACGATATTCAATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTAGGTT
* * * * * * **
34080289 GCGCTTTTTCATTTGTTCAAATTAATCGAATATCCCTTTGGAATTTCACTCGTATTTTCTAA
65 ACACTTTTTCATTGGTTCAAATCAATCGAAGATCCCTTCGGAATTTCACTCACATTTTCTAA
34080351 GGTGAGGCAA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
129 7 0.06
130 103 0.94
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (129 bp):
CTTTAAAACGAAGACGATATTCAATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTAGGTTA
CACTTTTTCATTGGTTCAAATCAATCGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAAT
Found at i:34081864 original size:5 final size:5
Alignment explanation
Indices: 34081854--34081890 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
34081844 CATGCATTTA
34081854 CATTG CATTG CA-T- CATTTG CATTG CATTG CATTG CAT
1 CATTG CATTG CATTG CA-TTG CATTG CATTG CATTG CAT
34081891 CATTTGCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 24 0.83
6 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (5 bp):
CATTG
Found at i:34081881 original size:24 final size:24
Alignment explanation
Indices: 34081854--34081900 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
34081844 CATGCATTTA
34081854 CATTGCATTGCATCATTTGCATTG
1 CATTGCATTGCATCATTTGCATTG
34081878 CATTGCATTGCATCATTTGCATT
1 CATTGCATTGCATCATTTGCATT
34081901 AAATTTCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (24 bp):
CATTGCATTGCATCATTTGCATTG
Found at i:34081900 original size:19 final size:19
Alignment explanation
Indices: 34081848--34081885 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
34081838 TCATCCCATG
34081848 CATTTACATTGCATTGCAT
1 CATTTACATTGCATTGCAT
*
34081867 CATTTGCATTGCATTGCAT
1 CATTTACATTGCATTGCAT
34081886 TGCATCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (19 bp):
CATTTACATTGCATTGCAT
Found at i:34083375 original size:7 final size:7
Alignment explanation
Indices: 34083363--34083388 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
34083353 TTAATAGTCG
34083363 TCAAATT
1 TCAAATT
34083370 TCAAATT
1 TCAAATT
34083377 TCAAATT
1 TCAAATT
34083384 TCAAA
1 TCAAA
34083389 AAAAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (7 bp):
TCAAATT
Found at i:34085463 original size:45 final size:44
Alignment explanation
Indices: 34085281--34085609 Score: 157
Period size: 45 Copynumber: 7.5 Consensus size: 44
34085271 ATCTTATTTC
* * * * *
34085281 CCTGAAATTGAAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCT-AGCTT
* * * * *
34085326 CCTGAAGTTGCAGTGAAGTAGATTTAAGCCA-CCAACCTAGC-T
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCTAGCTT
* * * * * * *** * * *
34085368 CTCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAGATCTTGTTT
1 C-CTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCTAGCTT
*
34085412 CCCTGAAGTTGCAGTGAAGCAGATCGAAGACAGCAAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCT-AGCTT
* * * * *
34085458 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCA-CCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCTAGCTT
* * * * * * **** * * *
34085501 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTTAGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCTAGCTT
* * *
34085544 CCCTGAAGTTACAGTGAAGCAGATCGAAGACGGCAAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCT-AGCTT
34085590 CCTGAAGTTGCAAG-GAAGCA
1 CCTGAAGTTGC-AGTGAAGCA
34085610 AATTTAAGCC
Statistics
Matches: 198, Mismatches: 75, Indels: 22
0.67 0.25 0.07
Matches are distributed among these distances:
42 8 0.04
43 51 0.26
44 43 0.22
45 88 0.44
46 8 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGAAGCAGATCTAAGACAGCAAATCTAGCTT
Found at i:34085838 original size:131 final size:129
Alignment explanation
Indices: 34085268--34086194 Score: 1058
Period size: 131 Copynumber: 7.1 Consensus size: 129
34085258 GCTAAAATTT
* * * * *
34085268 TAGATCTTATTTCCCTGAAATTGAAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG-GCTTCCTGAAG
* * * *
34085333 TTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCT-AAAA
65 TTGCAGTGAAGCAGATTTAAG-CA--ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
34085397 TT-
127 TTG
* *
34085399 TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACAGCAAATCTGAGCTTCCTGAA
1 T-AGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG-GCTTCCTGAA
* *
34085464 GTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-AAA
64 GTTGCAGTGAAGCAGATTTAAG-CA--ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
*
34085528 ATTT
126 ATTG
* *
34085532 TAGATCTTGTTTCCCTGAAGTTACAGTGAAGCAGATCGAAGACGGCAAATCTGAGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG-GCTTCCTGAAG
* * *
34085597 TTGCAAG-GAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGGAATAGGCTGAAG
65 TTGC-AGTGAAGCAGATTTAAG-CA--ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
*
34085661 ATTA
126 ATTG
* * * *
34085665 TAAATCTTGTTTCCCTGATA-TTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGGCTTCCTGAT
1 TAGATCTTGTTTCCCTGA-AGTTGCAGTGAGGCAGATCGAAGACGGCAAATCT-GGCTTCCTGAA
* * *
34085729 GTTGCAGTGAAGTAGATTTAAGCAAGTCTTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
64 GTTGCAGTGAAGCAGATTTAAGCAA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
34085794 TG
128 TG
* ** * * **
34085796 TAGATCTCGCCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATC-TGGCTTCCTGAAG
* * * *
34085861 ATGCAGCGAAGCAGATTTAAGC-ATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAAGATTA
65 TTGCAGTGAAGCAGATTTAAGCAATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTG
* ** * *
34085925 TAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGACGGTGAATCTAGGCTTCTTGAT
1 TAGATCTTGTTTCCCTGAAG-TTGCAGTGAGGCAGATCGAAGACGGCAAATCT-GGCTTCCTGAA
* * * *
34085989 GTTACAGTAAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAGGAT
64 GTTGCAGTGAAGCAGATTTAAGCAA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
34086054 TG
128 TG
* * * * * ** *
34086056 TAAATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAGTCTTGGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATC-TGGCTTCCTGAAG
* * * *
34086121 ATGCAGCGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGAAGTGGGCTGAAGATT
65 TTGCAGTGAAGCAGATTTAAGCAA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
34086186 G
129 G
*
34086187 TAGGTCTT
1 TAGATCTT
34086195 ATCTTCTCGA
Statistics
Matches: 694, Mismatches: 86, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
128 3 0.00
129 105 0.15
130 4 0.01
131 255 0.37
132 246 0.35
133 79 0.11
134 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (129 bp):
TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTGGCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCAATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTG
Found at i:34085950 original size:260 final size:260
Alignment explanation
Indices: 34085322--34086194 Score: 1141
Period size: 260 Copynumber: 3.3 Consensus size: 260
34085312 GCGAATCTGA
* * * * *
34085322 GCTTCCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCTCTAAAGTTGTAGTGGAG
1 GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG---CCATCCTAGCTCCCTAAAGTTGTAGTGGAG
* ** * *
34085387 TAGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACAGCAAAT
63 TAGGCTGAAGATTAT-AGATCTTGTTTCCCTGAA-TTGCAGTGGGGCAGATCGAAGACGGCGAAT
* * *
34085450 CT-GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTA
126 CTAG-GCTTCCTGATGTTGCAGTGAAGCAGATTTAAG-CA--AGTCCTAGCTCTCTAAAGTTGTA
* * * * * * * * *
34085513 GTGGAGTAGGCT-AAAATTTTAGATCTTGTTTCCCTGAAGTTACAGTGAAGCAGATCGAAGACGG
187 GTGGAGTAGGCTGAAGATTGTAGATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGA
*
34085577 CAAATC-TG
252 TAAATCTTG
* * *
34085585 AGCTTCCTGAAGTTGCAAG-GAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGG
1 -GCTTCCTGAAGATGC-AGCGAAGCAGATTTAAG---CCATCCTAGCTCCCTAAAGTTGTAGTGG
* *
34085649 AATAGGCTGAAGATTATAAATCTTGTTTCCCTGATATTGCAGTGGGGCAGATCGAAGACGGCGAA
61 AGTAGGCTGAAGATTATAGATCTTGTTTCCCTGA-ATTGCAGTGGGGCAGATCGAAGACGGCGAA
* *
34085714 TCTAGGCTTCCTGATGTTGCAGTGAAGTAGATTTAAGCAAGTCTTAGCTCTCTAAAGTTGTAGTG
125 TCTAGGCTTCCTGATGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTG
*
34085779 GAGTAGGCTGAAGATTGTAGATCTCGCCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAA
190 GAGTAGGCTGAAGATTGTAGATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAA
34085844 ATCTTG
255 ATCTTG
*
34085850 GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG-CATCCTAGCTCCCTAAGGTTGTAGTGGAGTAG
1 GCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
*
34085914 GCTGAAGATTATAGATCTTGTTTCCCTGAGATTGCAGTGGGGCAGATCGAAGACGGTGAATCTAG
66 GCTGAAGATTATAGATCTTGTTTCCCTGA-ATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAG
* * *
34085979 GCTTCTTGATGTTACAGTAAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTA
130 GCTTCCTGATGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTA
* * *
34086044 GGCTGAGGATTGTAAATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAGTCTT
195 GGCTGAAGATTGTAGATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTT
34086109 G
260 G
* * *
34086110 GCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGAAGTG
1 GCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCCA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTA
* *
34086175 GGCTGAAGATTGTAGGTCTT
65 GGCTGAAGATTATAGATCTT
34086195 ATCTTCTCGA
Statistics
Matches: 549, Mismatches: 49, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
260 247 0.45
261 1 0.00
262 45 0.08
263 32 0.06
264 138 0.25
265 83 0.15
266 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (260 bp):
GCTTCCTGAAGATGCAGCGAAGCAGATTTAAGCCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
GCTGAAGATTATAGATCTTGTTTCCCTGAATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGG
CTTCCTGATGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTAG
GCTGAAGATTGTAGATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTG
Found at i:34086437 original size:44 final size:44
Alignment explanation
Indices: 34086374--34087676 Score: 1730
Period size: 44 Copynumber: 29.8 Consensus size: 44
34086364 TAAGACCAGA
* * * *
34086374 CAGATTTGGCGTCTCTGTAGTAGCGGAAAGCAAATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * * * *
34086418 CAGATTTAGCATCTCTGTAGTGGCGGTGAGCAAATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
34086462 CAGATTTGGCGTCTCTATATTGGCGGAGAGCAGATTGAAAATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34086506 TAGATTTGGCGTTTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
34086550 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34086594 CAGATTTGGCGTCTCTGTGTTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
34086638 CAGATTTGGCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
34086682 CAGATTT---G-----GTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34086718 CAGATTTAGCGTCTCTGTATTGGCGGAGAGAAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
34086762 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34086806 TAGATTTGGCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* ** * * *
34086850 CACATTTAACGTCTCTGTATCGTCGGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * ** *
34086894 CAGATTTTGCGTCTCTGTATTGACAAAGAGCAGATCGAAAATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34086938 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
34086982 CAGATTTGGCGTCTCTGTATCGTCGGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *** *
34087026 CAGATTTGGCATCTCTGTATTGTTAGAGGGCAGATCGAAGA-AG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
34087069 TTAGATTTGGTGTTTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34087114 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAAATCGAAGACAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34087158 CAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGAGAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* **
34087202 CAGATTTGGCGTCTCTGTATTGACAAAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
34087246 AAGATTTGGCGTCTCTGTATTGGCGGAGAGTAAATCGAAGAGAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
34087290 GAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
** *
34087334 CAGATTTGGCGTCTCTGTATTATCGGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
34087378 CAGATTTGGCGTCTCTATATTGTCAGAGGGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
34087421 TTAGATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
34087466 CAGATTTGGCGTCTCTGTATTTGCAGAGAGCAAATCGAAGACAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
34087510 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
34087553 ACAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *** *
34087598 CAGATTTGGCATCTCTGTGTTGATAGAGAGTAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
34087641 ACAGATTTGGCATCTCTATATTGGCAGAGAGCAGAT
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGAT
34087677 AAAAATAACA
Statistics
Matches: 1114, Mismatches: 130, Indels: 30
0.87 0.10 0.02
Matches are distributed among these distances:
36 34 0.03
39 1 0.00
41 1 0.00
43 5 0.00
44 1069 0.96
45 4 0.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
Found at i:34090748 original size:131 final size:128
Alignment explanation
Indices: 34090445--34090950 Score: 354
Period size: 131 Copynumber: 3.9 Consensus size: 128
34090435 TCAAAAATTC
* * ** * * * * *
34090445 TTCAAAACGAAGATGAGATTTGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGTGTTGGGTTG
1 TTCAAAACGAAGACGATATTCAATGTTTGGCAATTTGAG-AATCATGCCCTATCGTGCTGGGTTG
* ** * * * * * * *
34090510 CAAC-TTCGCATTTGCTCAAAATAATCGAATATCACTTCAAAGTTTCACTCATATCTTCTAAAAA
65 C-GCTTTTTCATTTGTTCAAAATAATAGAATATCCCTT-TAA-TTTCACTAACATTTTCTAAAAA
34090574 TCT
127 -CT
* *** ** * ** *
34090577 TTTAAAACGAAGGTAATACTT-GGTATTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTG
1 TTCAAAACGAAGACGATA-TTCAATGTTTGGCAATTTGAGAATCATGCCCTATCGTGCTGGGTTG
* * * * * ** *
34090641 TGATTTCTCGTTTGTTCAAAATAATAGAATATTCCTTTATATTCTCACTAATGTTTATTTAAAAC
65 CGCTTTTTCATTTGTTCAAAATAATAGAATATCCCTTTA-ATT-TCACTAACATTT-TCTAAAA-
34090706 ACT
126 ACT
* * *
34090709 TT-AAAACGAAGACGATGTTCAATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTAGGTTGC
1 TTCAAAACGAAGACGATATTCAATGTTTGGCAATTTGAGAATCATGCCCTATCGTGCTGGGTTGC
* * ** * * * * *
34090773 GCTTTTTCATTGGTTCGAAGCAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAATCT
66 GCTTTTTCATTTGTTCAAAATAATAGAATATCCCTT--TAATTTCACTAACATTTTCTAAAAACT
* * * *
34090838 TTCAAAATGAAGGCGATATTCGATGTTTGGCGATTTGAGAATCGA-GCCCTATCGTGCTGGGTTG
1 TTCAAAACGAAGACGATATTCAATGTTTGGCAATTTGAGAATC-ATGCCCTATCGTGCTGGGTTG
* *
34090902 CGCTTTTTCATTTGTTCAAATTAATCGAATATCCCTTTGAAATTTCACT
65 CGCTTTTTCATTTGTTCAAAATAATAGAATATCCCTTT--AATTTCACT
34090951 CGTATTTTCT
Statistics
Matches: 292, Mismatches: 69, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
129 4 0.01
130 104 0.36
131 140 0.48
132 40 0.14
133 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (128 bp):
TTCAAAACGAAGACGATATTCAATGTTTGGCAATTTGAGAATCATGCCCTATCGTGCTGGGTTGC
GCTTTTTCATTTGTTCAAAATAATAGAATATCCCTTTAATTTCACTAACATTTTCTAAAAACT
Found at i:34090881 original size:130 final size:129
Alignment explanation
Indices: 34090707--34090962 Score: 350
Period size: 130 Copynumber: 2.0 Consensus size: 129
34090697 ATTTAAAACA
* *
34090707 CTTTAAAACGAAGACGATGTTCAATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTAGGTTG
1 CTTTAAAACGAAGACGATATTCAATGTTTGGCAATTTGAGAATCGAGCCCTATCGTGCTAGGTTG
* * *
34090772 CGCTTTTTCATTGGTTCGAAGCAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAAT
66 CGCTTTTTCATTGGTTCAAAGCAATCGAAGATCCCTTCGAAATTTCACTCACATTTTCTAAAAT
* * * * *
34090836 CTTTCAAAATGAAGGCGATATTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTT
1 CTTT-AAAACGAAGACGATATTCAATGTTTGGCAATTTGAGAATCGAGCCCTATCGTGCTAGGTT
* ** * * **
34090901 GCGCTTTTTCATTTGTTCAAATTAATCGAATATCCCTTTGAAATTTCACTCGTATTTTCTAA
65 GCGCTTTTTCATTGGTTCAAAGCAATCGAAGATCCCTTCGAAATTTCACTCACATTTTCTAA
34090963 GGTGAGGCAA
Statistics
Matches: 109, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
129 4 0.04
130 105 0.96
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (129 bp):
CTTTAAAACGAAGACGATATTCAATGTTTGGCAATTTGAGAATCGAGCCCTATCGTGCTAGGTTG
CGCTTTTTCATTGGTTCAAAGCAATCGAAGATCCCTTCGAAATTTCACTCACATTTTCTAAAAT
Found at i:34092244 original size:26 final size:25
Alignment explanation
Indices: 34092213--34092267 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
34092203 ATTTTGATTC
**
34092213 TTAAATAGTTAATTAAAATATAAAAA
1 TTAAATAG-TAAAAAAAATATAAAAA
* *
34092239 TTAAATCGTAAAAAAAATATAAAAG
1 TTAAATAGTAAAAAAAATATAAAAA
34092264 TTAA
1 TTAA
34092268 TCATTATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (25 bp):
TTAAATAGTAAAAAAAATATAAAAA
Found at i:34093523 original size:10 final size:10
Alignment explanation
Indices: 34093502--34093553 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
34093492 AATGAAATTC
34093502 TAAAAGATAAA
1 TAAAA-ATAAA
*
34093513 TACAAATAAA
1 TAAAAATAAA
*
34093523 TAAAAATAAT
1 TAAAAATAAA
*
34093533 TAAAGATAAA
1 TAAAAATAAA
34093543 TAAAAATAAA
1 TAAAAATAAA
34093553 T
1 T
34093554 CCTAAAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:34095204 original size:5 final size:5
Alignment explanation
Indices: 34095190--34095227 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
34095180 AATAATAAAT
*
34095190 AATAA GATAA AATAA AATAA AATAA AATAAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AAT-AA AATAA AA
34095228 ATTGGGTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:34101601 original size:10 final size:10
Alignment explanation
Indices: 34101586--34101631 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
34101576 ATTTTAAAAC
34101586 ATAAATACAA-
1 ATAAATA-AAG
34101596 ATAAATAAAG
1 ATAAATAAAG
34101606 ATAAATAAAG
1 ATAAATAAAG
34101616 ATAAATGAAA-
1 ATAAAT-AAAG
34101626 ATAAAT
1 ATAAAT
34101632 CCTAAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.06
10 29 0.85
11 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.22
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:34112386 original size:46 final size:44
Alignment explanation
Indices: 34112336--34112422 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
34112326 GGCTGTAATG
* *
34112336 GAATAGGACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAGTA
1 GAATAGAACTGTAAT-AGT-ATTCAACTATTTGGTTGAATGGAGTA
***
34112382 GAATAGAACTGTAATAGTATTCTTGTATTTGGTTGAATGGA
1 GAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGGA
34112423 ATGATATTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 19 0.53
45 3 0.08
46 14 0.39
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (44 bp):
GAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGGAGTA
Found at i:34112617 original size:17 final size:17
Alignment explanation
Indices: 34112595--34112627 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34112585 AATTATTATT
34112595 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
34112612 AAATATAATTTAATAA
1 AAATATAATTTAATAA
34112628 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:34113172 original size:18 final size:18
Alignment explanation
Indices: 34113149--34113183 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
34113139 ATGTGGTAGT
*
34113149 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
34113167 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
34113184 ATATCTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:34113246 original size:40 final size:40
Alignment explanation
Indices: 34113187--34113367 Score: 281
Period size: 40 Copynumber: 4.5 Consensus size: 40
34113177 CTTAAGTATA
* *
34113187 TCTATTAATACATACTTCATCCGGTTAAATTATACAGTTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAATTT
* *
34113227 TCTGTTAATACATACTTCATCCGGATAAATTATACAGTTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAATTT
* *
34113267 TCTATTAATACATACTTTATCCGGGTAAATTATACAATTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAATTT
*
34113307 TCTATTAATACATACTTCATCCGGATCAATTATACAATTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAATTT
* *
34113347 TTTGTTAATACATACTTCATC
1 TCTATTAATACATACTTCATC
34113368 AGATTTTCTG
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (40 bp):
TCTATTAATACATACTTCATCCGGATAAATTATACAATTT
Found at i:34120296 original size:15 final size:16
Alignment explanation
Indices: 34120271--34120300 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
34120261 TTCAAGTTAA
34120271 GATGATGAAGGAAGAT
1 GATGATGAAGGAAGAT
34120287 GATG-TGAAGGAAGA
1 GATGATGAAGGAAGA
34120301 AGAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (16 bp):
GATGATGAAGGAAGAT
Found at i:34123579 original size:34 final size:34
Alignment explanation
Indices: 34123508--34123588 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
34123498 TGAAATGATT
*
34123508 TGTTATAAGCATATTATTTGCTACTGTGTTGAAC
1 TGTTATAAGCATATTATTTGCTACTGTATTGAAC
* * **
34123542 TGTTATAAGCATATTGA-TTGTTATTGTATTGTTC
1 TGTTATAAGCATATT-ATTTGCTACTGTATTGAAC
*
34123576 TGTTAAAAGCATA
1 TGTTATAAGCATA
34123589 ATTAAATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.46
Consensus pattern (34 bp):
TGTTATAAGCATATTATTTGCTACTGTATTGAAC
Found at i:34123749 original size:44 final size:44
Alignment explanation
Indices: 34123686--34123883 Score: 261
Period size: 44 Copynumber: 4.5 Consensus size: 44
34123676 TTATCTGCAA
* * * *
34123686 ATTTGTTGTGCATCAACAACTAGAGGCAGATTCCATCTGCGGGT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
* * *
34123730 ATTTGCTGTGTATCCACAACTAGAGGCAGATTCTATCTGTGGGT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
* * *
34123774 ATTTGCTCTGTATCCACAACCAGAGGCAGATTCCATTTGCAGGT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
*
34123818 ATTTGCTCTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGTT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGG-T
* * *
34123863 AATTGTTGTGCATCCACAACC
1 ATTTGCTGTGTATCCACAACC
34123884 TATTGACAGC
Statistics
Matches: 136, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 118 0.87
45 18 0.13
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (44 bp):
ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
Found at i:34128591 original size:19 final size:18
Alignment explanation
Indices: 34128556--34128590 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34128546 TTTAATTTTC
*
34128556 ATTCATAAAAATTATATA
1 ATTCATAAAAAATATATA
34128574 ATTCATAAAAAA-ATATA
1 ATTCATAAAAAATATATA
34128591 TTACAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTCATAAAAAATATATA
Found at i:34138265 original size:23 final size:23
Alignment explanation
Indices: 34138239--34138282 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
34138229 GTAATATACA
34138239 AAATAATACACATTAAT-TTAAAT
1 AAATAATACACA-TAATATTAAAT
*
34138262 AAATAATATACATAATATTAA
1 AAATAATACACATAATATTAA
34138283 GATTGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATAATACACATAATATTAAAT
Found at i:34140282 original size:44 final size:45
Alignment explanation
Indices: 34140200--34140316 Score: 112
Period size: 44 Copynumber: 2.6 Consensus size: 45
34140190 TGTCTTCGAT
* * * * * * *
34140200 CTGCTCCACTACTAC-TTAGGGATATAAGATCTACAATCTTTAGT
1 CTGCTCCATTACTACATCAGGAAGATAAGATCTAAAATCTTCAGC
* *
34140244 CTGCTTCATTGCTACATCAGGAAGATAAGA-CTAAAATCTTCAGC
1 CTGCTCCATTACTACATCAGGAAGATAAGATCTAAAATCTTCAGC
* * *
34140288 CTGCTCCCTTACTACCTCAGGGAGATAAG
1 CTGCTCCATTACTACATCAGGAAGATAAG
34140317 GCTAGTGGCT
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
44 47 0.81
45 11 0.19
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (45 bp):
CTGCTCCATTACTACATCAGGAAGATAAGATCTAAAATCTTCAGC
Found at i:34140472 original size:132 final size:131
Alignment explanation
Indices: 34140303--34140550 Score: 336
Period size: 132 Copynumber: 1.9 Consensus size: 131
34140293 CCCTTACTAC
* * * *
34140303 CTCAGGGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTCGGGAAGATAAGATTCGCC
1 CTCAGGGAGACAAGGCTAGTGGCTGAAATTATCTTCCCTACTACCTCGGGAAGATAAGATTCACC
* * *
34140368 ATCTTCGATCTGCTCCACTACTACTTTGGGAGACAAGATCTACAATCTTCAGCCTACTCTACTGC
66 ATCTTCAATCTACTCCACTACTACTTAGGGAGACAAGATCT-CAATCTTCAGCCTACTCTACTGC
34140433 TG
130 TG
* * *
34140435 CTCAGGGAGGCAAGGCTAGTGGCTGAAATCTAT-TTCCCTACTACTTCGGGAAGATTAGATTCAC
1 CTCAGGGAGACAAGGCTAGTGGCTGAAAT-TATCTTCCCTACTACCTCGGGAAGATAAGATTCAC
* * * * *
34140499 CGTCTTCAATCTACTCCACTACTGCTTAGGGATATAAGATCTGAATCTTCAG
65 CATCTTCAATCTACTCCACTACTACTTAGGGAGACAAGATCTCAATCTTCAG
34140551 TCTGCTTCAT
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
131 9 0.09
132 89 0.89
133 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (131 bp):
CTCAGGGAGACAAGGCTAGTGGCTGAAATTATCTTCCCTACTACCTCGGGAAGATAAGATTCACC
ATCTTCAATCTACTCCACTACTACTTAGGGAGACAAGATCTCAATCTTCAGCCTACTCTACTGCT
G
Found at i:34140590 original size:44 final size:44
Alignment explanation
Indices: 34140542--34140979 Score: 197
Period size: 44 Copynumber: 9.9 Consensus size: 44
34140532 ATAAGATCTG
* *
34140542 AATCTTCAGTCTGCTTCATTGCTACCTCAAGAAGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
* * * * * * **
34140586 AATCTTCGGCCTGCTCCCTTACTACCTTAGGAAGATAAGGCTGG
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
*** ** * * * *
34140630 TGGCTAAAATCTGCTCCCCTGTTACCTCGAA-AAGATAAGATTCAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTC-AAGAAGATAAGACT-AC
** ** * * *
34140675 CGTCTTC-GATCTGCTCAGTT-CTATCTCAAGGAGATAAGATCTAG
1 AATCTTCAG-TCTGCTCCCTTGCTACCTCAAGAAGATAAGA-CTAC
* * * * *
34140719 AATCTTTAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
* * * * * * **
34140763 AATCTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGG
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
*** ** * * * * **
34140807 TGGCTAAAATCTGCTCCCTTGTTACCTCAGGAAGATAAGATTTGT
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGA-CTAC
* * * *
34140852 GATCTTC-GATTTGCTCCAC-TGCTATCCT-AGGGAGATAAGATCTAC
1 AATCTTCAG-TCTGCTCC-CTTGCTA-CCTCAAGAAGATAAGA-CTAC
* *
34140897 AATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
* * * *
34140941 AATCTTCGGCCTGCTCCGTTACTACCTC-AGAGAGATAAG
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGA-AGATAAG
34140980 GCTGGTGGCT
Statistics
Matches: 281, Mismatches: 98, Indels: 30
0.69 0.24 0.07
Matches are distributed among these distances:
43 5 0.02
44 187 0.67
45 84 0.30
46 5 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
Found at i:34140966 original size:178 final size:176
Alignment explanation
Indices: 34140525--34141053 Score: 767
Period size: 178 Copynumber: 3.0 Consensus size: 176
34140515 CACTACTGCT
* * *
34140525 TAGGGATATAAGATCT-GAATCTTCAGTCTGCTTCATTGCTACCTCAAGAAGATAAGACTACAAT
1 TAGGGAGATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAAT
* * *
34140589 CTTCGGCCTGCTCCCTTACTACCTTAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGTTA
66 CTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTA
* * * *
34140654 CCTCGAAAAGATAAGATTCACCG-TCTTCGATCTGCT-CAGTTCTATC
131 CCTCG-AAAGATAAGATTTA-TGATCTTCGATCTGCTCCACTGCTATC
* * * *
34140700 TCAAGGAGATAAGATCTAGAATCTTTAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTACAA
1 T-AGGGAGATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAA
34140765 TCTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTT
65 TCTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTT
* * *
34140830 ACCTCAGGAAGATAAGATTTGTGATCTTCGATTTGCTCCACTGCTATCC
130 ACCTC-GAAAGATAAGATTTATGATCTTCGATCTGCTCCACTGCTAT-C
*
34140879 TAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAAT
1 TAGGGAGATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAAT
* * *
34140944 CTTCGGCCTGCTCCGTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGCTA
66 CTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTA
* * *
34141009 CCTCTGAAAGGTAAGATCTATGATCTTCGATCTGCTCCATTGCTA
131 CCTC-GAAAGATAAGATTTATGATCTTCGATCTGCTCCACTGCTA
34141054 CTTCATGGAG
Statistics
Matches: 316, Mismatches: 32, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
175 1 0.00
176 14 0.04
177 132 0.42
178 167 0.53
179 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (176 bp):
TAGGGAGATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAAT
CTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTA
CCTCGAAAGATAAGATTTATGATCTTCGATCTGCTCCACTGCTATC
Found at i:34150410 original size:28 final size:28
Alignment explanation
Indices: 34150370--34150433 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
34150360 TCTAGAAAAG
34150370 CATTCGAATTAAGATTTTCAAAGGTTTT
1 CATTCGAATTAAGATTTTCAAAGGTTTT
34150398 CATTCGAATTAAGATTTTCAAAGGTTTT
1 CATTCGAATTAAGATTTTCAAAGGTTTT
34150426 C-TTC-AATT
1 CATTCGAATT
34150434 GAAGTTAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 4 0.11
27 3 0.08
28 29 0.81
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.44
Consensus pattern (28 bp):
CATTCGAATTAAGATTTTCAAAGGTTTT
Found at i:34150513 original size:12 final size:12
Alignment explanation
Indices: 34150496--34150521 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34150486 GCCTAACAAC
34150496 TAAAAATAATAA
1 TAAAAATAATAA
34150508 TAAAAATAATAA
1 TAAAAATAATAA
34150520 TA
1 TA
34150522 CCAAATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAAATAATAA
Found at i:34151985 original size:3 final size:3
Alignment explanation
Indices: 34151977--34152183 Score: 129
Period size: 3 Copynumber: 67.7 Consensus size: 3
34151967 GTTTATTTAC
* * * *
34151977 TTA TTA TTA -CA TTA TTAA TTAA TCTA TTA TTA TTG TTG TTA TTT TTA
1 TTA TTA TTA TTA TTA TT-A TT-A T-TA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
34152024 CTA TAA CTA TTA TTT TCTA TTA TTA TTA TTA TTA CTG TCA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
34152070 TTA CTA TTA TTA TTT TTA -TA TTA TTA TT- TATA TTAA TT- TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT-A TTA TTA TTA
* * *
34152114 TTA TTA TTA TTCC TGA TT- TTA TTA TTA TTAA TGTA TCA TTA TTA TTCA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TT-A
34152162 TT- TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
34152184 TCTTATTTTG
Statistics
Matches: 158, Mismatches: 31, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
2 10 0.06
3 124 0.78
4 22 0.14
5 2 0.01
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:34152198 original size:32 final size:32
Alignment explanation
Indices: 34152041--34152201 Score: 111
Period size: 32 Copynumber: 5.0 Consensus size: 32
34152031 TATTATTTTC
* * *
34152041 TATTATTATTA-TTATTACTGTCATTATTATTAC
1 TATTATTATTATTTATTA-TTTTATT-TTATTAT
34152074 TATTATTATT-TTTA-TATTATTATTTATATTAAT
1 TATTATTATTATTTATTATT-TTATTT-TATT-AT
* *
34152107 T-TTGTTATTA-TTATTATTCCTGATTTTATTAT
1 TATTATTATTATTTATTATT--TTATTTTATTAT
* *
34152139 TATTAATGTATCA-TTATTA-TTCATTTTATTAT
1 TATT-AT-TATTATTTATTATTTTATTTTATTAT
* *
34152171 TATTATTATTATTTCTTATTTTGTTTTATTA
1 TATTATTATTATTTATTATTTTATTTTATTA
34152202 AATATTTTTT
Statistics
Matches: 103, Mismatches: 13, Indels: 25
0.73 0.09 0.18
Matches are distributed among these distances:
30 4 0.04
31 9 0.09
32 48 0.47
33 25 0.24
34 7 0.07
35 10 0.10
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (32 bp):
TATTATTATTATTTATTATTTTATTTTATTAT
Found at i:34157759 original size:25 final size:26
Alignment explanation
Indices: 34157699--34157747 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
34157689 ATTTGTTTTA
*
34157699 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
34157723 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
34157748 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:34161169 original size:26 final size:26
Alignment explanation
Indices: 34161140--34161247 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
34161130 TGGTACGAAT
*
34161140 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
34161166 TGATAATGGATTTGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
34161192 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
34161218 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
34161244 TGAT
1 TGAT
34161248 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:34162729 original size:28 final size:26
Alignment explanation
Indices: 34162687--34162757 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
34162677 AAAAGTAGCT
* * *
34162687 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
34162715 AAATTACTGTTATACCTCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
34162741 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
34162758 TTAGGGTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 18 0.50
27 1 0.03
28 17 0.47
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:34162946 original size:54 final size:53
Alignment explanation
Indices: 34162864--34163006 Score: 232
Period size: 54 Copynumber: 2.6 Consensus size: 53
34162854 GGAGGAAGCA
34162864 TTCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTG
34162918 TTCTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTG
* * *
34162972 TTTTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 TTCTGGTGGCTATGCCACATTATCTG-ATCTGGTG
34163007 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 7 0.08
54 77 0.92
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (53 bp):
TTCTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTG
Found at i:34163002 original size:32 final size:27
Alignment explanation
Indices: 34162865--34163006 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
34162855 GAGGAAGCAT
*
34162865 TCTGGTGGCTATGCCACA-ATTATCTGA
1 TCTGGTGGCTCTGCCACATA-TATCTGA
*
34162892 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGA
*
34162919 TCTGGTGGCTATGCCACGAT-TATCTGA
1 TCTGGTGGCTCTGCCAC-ATATATCTGA
*
34162946 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGA
*
34162973 TTTGGTGGCTCTGCCACA-ATATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTG-A
34163000 TCTGGTG
1 TCTGGTG
34163007 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
26 9 0.09
27 90 0.88
28 3 0.03
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATATATCTGA
Found at i:34169285 original size:26 final size:26
Alignment explanation
Indices: 34169248--34169353 Score: 176
Period size: 26 Copynumber: 4.1 Consensus size: 26
34169238 GTACAAATTA
*
34169248 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
*
34169274 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
34169300 ATAATGGGTTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
* *
34169326 ATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
34169352 AT
1 AT
34169354 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATATTCCATG
Found at i:34172019 original size:19 final size:20
Alignment explanation
Indices: 34171995--34172032 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
34171985 GGTACCACCA
34171995 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
34172014 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
34172033 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:34172328 original size:46 final size:46
Alignment explanation
Indices: 34172261--34172429 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
34172251 CGCCCCTAAG
*
34172261 TGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCATCCATAAA
* * * * * * **
34172307 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACG-TTAGCATCCAT-AAA
* * * * *
34172354 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCATCCATAAA
34172400 TGAACTCGGACTCAACTCAACGAGCTCGGA
1 TGAACTCGGACTCAACTCAACGAGCTCGGA
34172430 TGCTCAACCA
Statistics
Matches: 98, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 63 0.64
47 35 0.36
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCATCCATAAA
Found at i:34172371 original size:93 final size:93
Alignment explanation
Indices: 34172262--34172432 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
34172252 GCCCCTAAGT
*
34172262 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
34172327 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
34172355 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
34172420 CGAGCTCGGATGC
66 CGAGCTCGGATGC
34172433 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:34173805 original size:27 final size:26
Alignment explanation
Indices: 34173765--34173905 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
34173755 AGGAAGCATC
*
34173765 CTGGTGGCTGTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
34173792 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
34173819 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
34173846 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
34173873 TTGGTGGCTCTGCCACAATATTTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
34173900 CTGGTG
1 CTGGTG
34173906 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 9 0.09
27 86 0.89
28 2 0.02
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:34173915 original size:54 final size:53
Alignment explanation
Indices: 34173765--34173923 Score: 205
Period size: 54 Copynumber: 3.0 Consensus size: 53
34173755 AGGAAGCATC
* *
34173765 CTGGTGGCTGTGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGTCACATATATCTGTT
*
34173819 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTCTGTCACATATATCTGTT
* * * *
34173873 TTGGTGGCTCTGCCACAATATTTGTATCTGGTGACT-TCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACAATATCTG-ATCTGGTGGCTCT-GTCACATATATCTG
34173924 GCAGCCTCGC
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
53 14 0.15
54 79 0.84
55 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGTCACATATATCTGTT
Found at i:34175736 original size:18 final size:18
Alignment explanation
Indices: 34175702--34175799 Score: 81
Period size: 18 Copynumber: 5.4 Consensus size: 18
34175692 TCATTAACAA
* *
34175702 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
34175719 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
* **
34175737 TCGGTAACAATCAAATAT
1 TCAGTAACAATCAGTTAT
* * *
34175755 TTAATAATAATCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
34175773 TCAGTAACAATTAAATTAT
1 TCAGTAACAA-TCAGTTAT
34175792 TCAGTAAC
1 TCAGTAAC
34175800 GTCGATCTTT
Statistics
Matches: 61, Mismatches: 18, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
17 4 0.07
18 43 0.70
19 14 0.23
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:34176656 original size:4 final size:4
Alignment explanation
Indices: 34176647--34176677 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
34176637 CCTTTTCTCC
34176647 CTTT CTTT CTTT CTTT CTTT CCTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CT
34176678 CCCCTGTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:34176738 original size:9 final size:9
Alignment explanation
Indices: 34176720--34176754 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
34176710 TTTCTTTTTC
*
34176720 ATTTCTTTT
1 ATTTCATTT
34176729 ATTTCATTT
1 ATTTCATTT
34176738 ATTTC-TTT
1 ATTTCATTT
34176746 ATTTCATTT
1 ATTTCATTT
34176755 CTTTATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (9 bp):
ATTTCATTT
Found at i:34176746 original size:17 final size:18
Alignment explanation
Indices: 34176720--34176766 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
34176710 TTTCTTTTTC
34176720 ATTTCTTTTATTTCATTT
1 ATTTCTTTTATTTCATTT
34176738 ATTTC-TTTATTTCATTT
1 ATTTCTTTTATTTCATTT
* *
34176755 CTTTATTTTATT
1 ATTTCTTTTATT
34176767 ATTAAACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTCTTTTATTTCATTT
Found at i:34176756 original size:13 final size:13
Alignment explanation
Indices: 34176720--34176762 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
34176710 TTTCTTTTTC
* *
34176720 ATTTCTTTTATTT
1 ATTTCATTTCTTT
34176733 CATTT-ATTTCTTT
1 -ATTTCATTTCTTT
34176746 ATTTCATTTCTTT
1 ATTTCATTTCTTT
34176759 ATTT
1 ATTT
34176763 TATTATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTCATTTCTTT
Found at i:34186992 original size:46 final size:47
Alignment explanation
Indices: 34186932--34187157 Score: 329
Period size: 46 Copynumber: 4.9 Consensus size: 47
34186922 TTTGACATAA
* * * * *
34186932 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
*
34186978 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
*
34187024 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
34187070 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
**
34187116 TGCCATGGT-TCTTTCAACCATGGTCTTACACA-TTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCA
34187158 GAGAGCACAC
Statistics
Matches: 169, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
45 36 0.21
46 133 0.79
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
Found at i:34189253 original size:12 final size:11
Alignment explanation
Indices: 34189232--34189288 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
34189222 TTTTATATAC
34189232 TAATAAAATAA
1 TAATAAAATAA
34189243 TAAT-AAA-AA
1 TAATAAAATAA
34189252 TAATAAAATATA
1 TAATAAAATA-A
* *
34189264 TTATTAAAATAT
1 -TAATAAAATAA
34189276 TAATAAAATAA
1 TAATAAAATAA
34189287 TA
1 TA
34189289 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.16
10 6 0.16
11 16 0.42
12 1 0.03
13 9 0.24
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:34189272 original size:33 final size:32
Alignment explanation
Indices: 34189226--34189324 Score: 96
Period size: 33 Copynumber: 3.1 Consensus size: 32
34189216 TTCTTTTTTT
34189226 ATATACTAATAAAATAATAATAAAAATAATAAA
1 ATATACTAATAAAATAATAAT-AAAATAATAAA
* * * *
34189259 ATATATTATTAAAATATTAATAAAATAAT-AT
1 ATATACTAATAAAATAATAATAAAATAATAAA
* * *
34189290 TTAT-CTAATTAAATAATTATAAAAT-ATCAAA
1 ATATACTAATAAAATAATAATAAAATAAT-AAA
34189321 ATAT
1 ATAT
34189325 CTCTAGCATC
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 2 0.04
30 16 0.31
31 8 0.15
32 8 0.15
33 18 0.35
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (32 bp):
ATATACTAATAAAATAATAATAAAATAATAAA
Found at i:34189274 original size:27 final size:26
Alignment explanation
Indices: 34189244--34189316 Score: 60
Period size: 27 Copynumber: 2.7 Consensus size: 26
34189234 ATAAAATAAT
34189244 AATAAAAATAATAAAATATATTAT-TAA
1 AATAAAAATAATAAAATAT-TTATCT-A
**
34189271 AATATTAATAA-AATAATATTTATCTA
1 AATAAAAATAATAA-AATATTTATCTA
* *
34189297 ATTAAATAATTATAAAATAT
1 AATAAA-AATAATAAAATAT
34189317 CAAAATATCT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
26 10 0.28
27 24 0.67
28 2 0.06
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAAATAATAAAATATTTATCTA
Found at i:34190209 original size:13 final size:13
Alignment explanation
Indices: 34190191--34190219 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34190181 AGAATTAGAA
34190191 AAACCTTAGAAAG
1 AAACCTTAGAAAG
34190204 AAACCTTAGAAAG
1 AAACCTTAGAAAG
34190217 AAA
1 AAA
34190220 TGTGGTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (13 bp):
AAACCTTAGAAAG
Found at i:34192563 original size:29 final size:28
Alignment explanation
Indices: 34192511--34192595 Score: 73
Period size: 29 Copynumber: 2.9 Consensus size: 28
34192501 TGTACATGTA
* * * *
34192511 CGAACCCTCTGTATGCGTATCCCTTATAGG
1 CGAACCCT-TGTATGC-AAACCCCTATAAG
34192541 CGAACCCTTGTATGCAAACCCCTATAAG
1 CGAACCCTTGTATGCAAACCCCTATAAG
* *
34192569 TGAACCCTTTATATG-AGAACCCCTATA
1 CGAACCC-TTGTATGCA-AACCCCTATA
34192596 TGTACGAACC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
28 16 0.34
29 23 0.49
30 8 0.17
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
CGAACCCTTGTATGCAAACCCCTATAAG
Found at i:34192597 original size:14 final size:14
Alignment explanation
Indices: 34192557--34192622 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 14
34192547 CTTGTATGCA
* *
34192557 AACCCCTATAAGTG
1 AACCCCTATATGAG
*
34192571 AACCCTTTATATGAG
1 AACCC-CTATATGAG
34192586 AACCCCTATATGTACG
1 AACCCCTATATG-A-G
*
34192602 AACCCTTATGAATGAG
1 AACCCCTAT--ATGAG
34192618 AACCC
1 AACCC
34192623 TCATATAAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
14 11 0.26
15 12 0.29
16 15 0.36
17 1 0.02
18 3 0.07
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (14 bp):
AACCCCTATATGAG
Found at i:34194053 original size:17 final size:17
Alignment explanation
Indices: 34194016--34194053 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
34194006 AACACTCGAT
*
34194016 TTTTATTTTTATTATAT
1 TTTTATTTTTATTATAA
34194033 TTTTATTTTTAGTT-TAA
1 TTTTATTTTTA-TTATAA
34194050 TTTT
1 TTTT
34194054 TTGCATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTATAA
Found at i:34196118 original size:7 final size:7
Alignment explanation
Indices: 34196106--34196175 Score: 54
Period size: 7 Copynumber: 9.7 Consensus size: 7
34196096 TTATTTTATT
34196106 TTATTTA
1 TTATTTA
*
34196113 TTATTTG
1 TTATTTA
34196120 TTATATTA
1 TTAT-TTA
34196128 TTTATTT-
1 -TTATTTA
34196135 TTATTTTA
1 TTA-TTTA
* *
34196143 CTAATTTT
1 -TTATTTA
*
34196151 TTATTTT
1 TTATTTA
34196158 TTATTT-
1 TTATTTA
34196164 TTATTTA
1 TTATTTA
34196171 TTATT
1 TTATT
34196176 CTTATACTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
6 9 0.17
7 30 0.58
8 7 0.13
9 6 0.12
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.74
Consensus pattern (7 bp):
TTATTTA
Found at i:34196136 original size:29 final size:27
Alignment explanation
Indices: 34196093--34196175 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 27
34196083 AGCCACCCCA
34196093 TTTTTA-T-TTTA-TTTTATTTATTAT
1 TTTTTATTATTTATTTTTATTTATTAT
*
34196117 TTGTTATATTATTTATTTTTATTTTACTAAT
1 TT-TT-TATTATTTATTTTTA-TTTA-TTAT
*
34196148 TTTTTATTTTTTATTTTTATTTATTAT
1 TTTTTATTATTTATTTTTATTTATTAT
34196175 T
1 T
34196176 CTTATACTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
24 2 0.04
25 2 0.04
26 2 0.04
27 5 0.10
28 8 0.16
29 19 0.39
30 6 0.12
31 5 0.10
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.76
Consensus pattern (27 bp):
TTTTTATTATTTATTTTTATTTATTAT
Found at i:34196164 original size:5 final size:6
Alignment explanation
Indices: 34196092--34196209 Score: 60
Period size: 6 Copynumber: 18.0 Consensus size: 6
34196082 AAGCCACCCC
34196092 ATTTTT A-TTTT A-TTTT ATTTATT ATTTGTTAT ATTATTT ATTTTT ATTTTACT
1 ATTTTT ATTTTT ATTTTT ATTT-TT A-TT-TT-T ATT-TTT ATTTTT ATTTT--T
* ** **
34196145 AATTTTTT ATTTTTT ATTTTT ATTTATT ATTCTT ATACTT ATATTTT AAATTT
1 -A-TTTTT A-TTTTT ATTTTT ATTT-TT ATTTTT ATTTTT AT-TTTT ATTTTT
*
34196198 ATTTTA ATTTTT
1 ATTTTT ATTTTT
34196210 TGCTATTTCT
Statistics
Matches: 90, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
5 10 0.11
6 40 0.44
7 23 0.26
8 9 0.10
9 4 0.04
10 4 0.04
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.72
Consensus pattern (6 bp):
ATTTTT
Found at i:34196168 original size:39 final size:39
Alignment explanation
Indices: 34196092--34196180 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 39
34196082 AAGCCACCCC
* *
34196092 ATTTTTATTTTATTTTATTTATTATTTGTTATATTATTT
1 ATTTTTATTTTATCTAATTTATTATTTGTTATATTATTT
*
34196131 ATTTTTATTTTA-CTAATTTTTTATTT-TT-TATT-TTT
1 ATTTTTATTTTATCTAATTTATTATTTGTTATATTATTT
34196166 ATTTATTATTCTTAT
1 ATTT-TTATT-TTAT
34196181 ACTTATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
35 7 0.16
36 9 0.20
37 5 0.11
38 11 0.25
39 12 0.27
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.74
Consensus pattern (39 bp):
ATTTTTATTTTATCTAATTTATTATTTGTTATATTATTT
Found at i:34196192 original size:39 final size:43
Alignment explanation
Indices: 34196102--34196192 Score: 100
Period size: 45 Copynumber: 2.2 Consensus size: 43
34196092 ATTTTTATTT
*
34196102 TATTTTATTTATTATTTGTTATATTATTTATTTTTATTTTACTAA
1 TATTTTATTTATTATTTGTTATATTATTTATTCTTA--TTACTAA
* * *
34196147 TTTTTTATTTTTTATTT-TTAT-TTA-TTATTCTTA-TACTTA
1 TATTTTATTTATTATTTGTTATATTATTTATTCTTATTACTAA
34196186 TATTTTA
1 TATTTTA
34196193 AATTTATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
39 11 0.27
42 8 0.20
43 3 0.07
44 4 0.10
45 15 0.37
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.71
Consensus pattern (43 bp):
TATTTTATTTATTATTTGTTATATTATTTATTCTTATTACTAA
Found at i:34196324 original size:27 final size:27
Alignment explanation
Indices: 34196288--34196350 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
34196278 ATTGAGTTTA
34196288 TTATTATTATTT-TCGTTTTATTTTT-ATT
1 TTATT-TTATTTATC-TTTT-TTTTTAATT
34196316 TTATTTTATTTATCTTTTTTTTTAATT
1 TTATTTTATTTATCTTTTTTTTTAATT
*
34196343 TTGTTTTA
1 TTATTTTA
34196351 GTTGCTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 5 0.16
27 20 0.62
28 7 0.22
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.76
Consensus pattern (27 bp):
TTATTTTATTTATCTTTTTTTTTAATT
Found at i:34196350 original size:32 final size:31
Alignment explanation
Indices: 34196294--34196367 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 31
34196284 TTTATTATTA
** * * *
34196294 TTATTTTCGTTTTATTTTTATTTTATTTTAT
1 TTATTTTTTTTTTAATTTTATTTTAGTTGAT
* *
34196325 TTATCTTTTTTTTTAATTTTGTTTTAGTTGCT
1 TTAT-TTTTTTTTTAATTTTATTTTAGTTGAT
34196357 TTATTTTTTTT
1 TTATTTTTTTT
34196368 ATTTTCTTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
31 11 0.31
32 24 0.69
ACGTcount: A:0.14, C:0.04, G:0.05, T:0.77
Consensus pattern (31 bp):
TTATTTTTTTTTTAATTTTATTTTAGTTGAT
Found at i:34196363 original size:27 final size:27
Alignment explanation
Indices: 34196304--34196365 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
34196294 TTATTTTCGT
* *
34196304 TTTA-TTTTTATTTTATTTTATTTATC
1 TTTATTTTTTATTTTATTTTAGTTAGC
*
34196330 TTT-TTTTTTAATTTTGTTTTAGTT-GC
1 TTTATTTTTT-ATTTTATTTTAGTTAGC
34196356 TTTATTTTTT
1 TTTATTTTTT
34196366 TTATTTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 12 0.40
27 18 0.60
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (27 bp):
TTTATTTTTTATTTTATTTTAGTTAGC
Found at i:34196368 original size:9 final size:9
Alignment explanation
Indices: 34196308--34196372 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 9
34196298 TTTCGTTTTA
34196308 TTTTTATTT
1 TTTTTATTT
34196317 TATTTTATTT
1 T-TTTTATTT
* *
34196327 ATCTT-TTT
1 TTTTTATTT
*
34196335 TTTTAATTT
1 TTTTTATTT
*
34196344 TGTTTTAGTT
1 T-TTTTATTT
**
34196354 GCTTTATTT
1 TTTTTATTT
34196363 TTTTTATTT
1 TTTTTATTT
34196372 T
1 T
34196373 CTTCAACTTA
Statistics
Matches: 41, Mismatches: 12, Indels: 6
0.69 0.20 0.10
Matches are distributed among these distances:
8 5 0.12
9 22 0.54
10 14 0.34
ACGTcount: A:0.14, C:0.03, G:0.05, T:0.78
Consensus pattern (9 bp):
TTTTTATTT
Found at i:34201137 original size:21 final size:21
Alignment explanation
Indices: 34201094--34201137 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34201084 TGCCTTTCTT
* *
34201094 TTTCTTTTTCTTTTTTTTTTA
1 TTTCTTTTTCTTTTTATTATA
34201115 TTTCTTTATTC-TTTTATTATA
1 TTTCTTT-TTCTTTTTATTATA
34201136 TT
1 TT
34201138 ATTAACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTCTTTTTCTTTTTATTATA
Found at i:34201161 original size:12 final size:15
Alignment explanation
Indices: 34201129--34201188 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
34201119 TTTATTCTTT
34201129 TATTATATTATTAAC
1 TATTATATTATTAAC
34201144 TATTATATT-TT-AC
1 TATTATATTATTAAC
34201157 TTTATTATATTATTTAA-
1 --TATTATATTA-TTAAC
34201174 TAATTATAATTATTA
1 T-ATTAT-ATTATTA
34201189 TTTCTTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 2 0.05
14 2 0.05
15 19 0.50
16 8 0.21
17 6 0.16
18 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATATTATTAAC
Found at i:34202714 original size:42 final size:42
Alignment explanation
Indices: 34202529--34202707 Score: 259
Period size: 42 Copynumber: 4.3 Consensus size: 42
34202519 TGAGAATACA
* * * * * * *
34202529 TGTAAGACCATATCTAGGATATGGCATCGGTATGATATTACG
1 TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCG
34202571 TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCG
*
34202613 TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCG
* * *
34202655 TGTAAGACCATGTCTGGGACATAGCATCGATACAAAATTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCG
34202697 TGTAAGACCAT
1 TGTAAGACCAT
34202708 AGCTGGGCTA
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 125 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATACGAAATTTCG
Found at i:34203724 original size:24 final size:24
Alignment explanation
Indices: 34203697--34203742 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
34203687 ATGGTATAGG
34203697 GATGATGAATTGGTACATTTTGAT
1 GATGATGAATTGGTACATTTTGAT
* *
34203721 GATGATGATTTGGTATATTTTG
1 GATGATGAATTGGTACATTTTG
34203743 TGGCATGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.46
Consensus pattern (24 bp):
GATGATGAATTGGTACATTTTGAT
Found at i:34205249 original size:23 final size:23
Alignment explanation
Indices: 34205187--34205241 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
34205177 TGTGTTTAAC
* * *
34205187 ATGCTAACCCTACATCTACTAAT
1 ATGCAAACCCTACATGTAGTAAT
*
34205210 ATGCGAACCCTACATGTAGTAAT
1 ATGCAAACCCTACATGTAGTAAT
34205233 ATGCAAACC
1 ATGCAAACC
34205242 TTATATGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.25
Consensus pattern (23 bp):
ATGCAAACCCTACATGTAGTAAT
Found at i:34205329 original size:15 final size:15
Alignment explanation
Indices: 34205306--34205339 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
34205296 TGGTATATGC
34205306 GAACCCTATATGCGT
1 GAACCCTATATGCGT
* *
34205321 GAACTCTATATGTGT
1 GAACCCTATATGCGT
34205336 GAAC
1 GAAC
34205340 ATTAGATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (15 bp):
GAACCCTATATGCGT
Found at i:34205387 original size:15 final size:15
Alignment explanation
Indices: 34205352--34205388 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
34205342 TAGATATGTG
*
34205352 AACCCCAGATGTGCA
1 AACCCTAGATGTGCA
*
34205367 AACCCTAGATGTGCT
1 AACCCTAGATGTGCA
34205382 AACCCTA
1 AACCCTA
34205389 ATACATGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.19
Consensus pattern (15 bp):
AACCCTAGATGTGCA
Found at i:34209039 original size:10 final size:10
Alignment explanation
Indices: 34208995--34209042 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
34208985 AATATAAATA
34208995 ATTTAA-TAT
1 ATTTAATTAT
* *
34209004 ATTTTATAAT
1 ATTTAATTAT
*
34209014 ATTTGTATTAT
1 ATTT-AATTAT
34209025 ATTTAATTAT
1 ATTTAATTAT
34209035 ATTTAATT
1 ATTTAATT
34209043 TGCATTCATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 5 0.15
10 19 0.58
11 9 0.27
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
ATTTAATTAT
Found at i:34209572 original size:16 final size:16
Alignment explanation
Indices: 34209553--34209613 Score: 54
Period size: 16 Copynumber: 3.7 Consensus size: 16
34209543 AATCATTTCA
34209553 TATAAAAATATTTAAT
1 TATAAAAATATTTAAT
34209569 TATAAAAAATAATGTT-AT
1 TAT-AAAAAT-AT-TTAAT
* *
34209587 GTA-AAAATTACTTAAT
1 -TATAAAAATATTTAAT
34209603 TATAAAAATAT
1 TATAAAAATAT
34209614 ATGATTTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
15 4 0.11
16 12 0.34
17 11 0.31
18 4 0.11
19 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (16 bp):
TATAAAAATATTTAAT
Found at i:34209578 original size:17 final size:17
Alignment explanation
Indices: 34209556--34209615 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
34209546 CATTTCATAT
34209556 AAAAATATTTAATTATA
1 AAAAATATTTAATTATA
*
34209573 AAAAATAATGTT-A-TGTA
1 AAAAAT-AT-TTAATTATA
* *
34209590 AAAATTACTTAATTATA
1 AAAAATATTTAATTATA
34209607 AAAATATAT
1 AAAA-ATAT
34209616 GATTTATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 9
0.68 0.13 0.19
Matches are distributed among these distances:
15 2 0.06
16 2 0.06
17 21 0.66
18 5 0.16
19 2 0.06
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (17 bp):
AAAAATATTTAATTATA
Found at i:34217983 original size:26 final size:26
Alignment explanation
Indices: 34217947--34218000 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
34217937 TTGAGTATAG
34217947 TCAGATACAGGTAATGTTCAGTTTGT
1 TCAGATACAGGTAATGTTCAGTTTGT
34217973 TCAGATACAGGTAATGTTCAGTTTGT
1 TCAGATACAGGTAATGTTCAGTTTGT
34217999 TC
1 TC
34218001 TAAGCTTTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (26 bp):
TCAGATACAGGTAATGTTCAGTTTGT
Found at i:34221764 original size:31 final size:31
Alignment explanation
Indices: 34221689--34221771 Score: 103
Period size: 31 Copynumber: 2.7 Consensus size: 31
34221679 CTAACGTTTA
* *
34221689 TTTTGGTCCAATTAGGTACATGAACTTGGCT
1 TTTTGGTCCAATTTGGTACTTGAACTTGGCT
* * *
34221720 TCTTGGTTCAATTTGGTACTTGGACTTGGCT
1 TTTTGGTCCAATTTGGTACTTGAACTTGGCT
* *
34221751 TTTTTGTCCAATTTAGTACTT
1 TTTTGGTCCAATTTGGTACTT
34221772 AGCTATATGA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.18, C:0.16, G:0.20, T:0.46
Consensus pattern (31 bp):
TTTTGGTCCAATTTGGTACTTGAACTTGGCT
Found at i:34223484 original size:3 final size:3
Alignment explanation
Indices: 34223476--34223510 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
34223466 TTAACCTATC
34223476 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
34223511 TATCCTTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:34237842 original size:21 final size:23
Alignment explanation
Indices: 34237806--34237849 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
34237796 ATCAATAATA
34237806 ATAAATATTCTATAATATAAAAT
1 ATAAATATTCTATAATATAAAAT
*
34237829 ATAAATATT-T-TAATTTAAAAT
1 ATAAATATTCTATAATATAAAAT
34237850 TGCTTATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
ATAAATATTCTATAATATAAAAT
Found at i:34238115 original size:36 final size:33
Alignment explanation
Indices: 34238054--34238119 Score: 87
Period size: 36 Copynumber: 1.9 Consensus size: 33
34238044 TACAATCATG
34238054 ATAAAATTAAATTTTACAAAAATATATTTTAAA
1 ATAAAATTAAATTTTACAAAAATATATTTTAAA
* *
34238087 ATAAATTTAATATTTTAGTCAACAATATATTTT
1 ATAAAATTAA-ATTTTA--CAAAAATATATTTT
34238120 TATTAAAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 9 0.32
34 6 0.21
36 13 0.46
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (33 bp):
ATAAAATTAAATTTTACAAAAATATATTTTAAA
Found at i:34240191 original size:23 final size:23
Alignment explanation
Indices: 34240156--34240201 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
34240146 ATATTTTAAT
*
34240156 TTTTTTAAAATATTTAATTAAATA
1 TTTTTTAAAATA-TTAAATAAATA
*
34240180 TTTTTT-ATATATTAAATAAATA
1 TTTTTTAAAATATTAAATAAATA
34240202 AAACTAGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 4 0.20
24 6 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTTTAAAATATTAAATAAATA
Found at i:34240372 original size:14 final size:14
Alignment explanation
Indices: 34240297--34240376 Score: 58
Period size: 14 Copynumber: 5.5 Consensus size: 14
34240287 TAATATTCTT
*
34240297 AATATATTATTAA-A
1 AATAT-TTAATAATA
*
34240311 AATATTT-ATATTA
1 AATATTTAATAATA
34240324 ACAT-TTTAATAATA
1 A-ATATTTAATAATA
*
34240338 ATATATATTACATTTATA
1 A-ATAT-TTA-A-TAATA
34240356 AATATTTAATAATA
1 AATATTTAATAATA
34240370 AATATTT
1 AATATTT
34240377 TATGCATTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
12 2 0.04
13 7 0.13
14 26 0.49
15 2 0.04
16 6 0.11
17 5 0.09
18 5 0.09
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATTTAATAATA
Found at i:34245876 original size:17 final size:17
Alignment explanation
Indices: 34245843--34245877 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
34245833 CAGAATGCTA
34245843 ATTTGGTATCGATTTTT
1 ATTTGGTATCGATTTTT
34245860 ATTTGAGTATCGATTTTT
1 ATTTG-GTATCGATTTTT
34245878 TTATAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.20, C:0.06, G:0.17, T:0.57
Consensus pattern (17 bp):
ATTTGGTATCGATTTTT
Found at i:34247819 original size:41 final size:41
Alignment explanation
Indices: 34247759--34247838 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
34247749 CCTTGAGTCC
* * * *
34247759 AACAAGCTTTGTGCCGGTGATTTATATCAGGTTTTGTGCCT
1 AACAAGCTTCGTGCAGGTGATTTATATCAAGCTTTGTGCCT
*
34247800 AACAGGCTTCGTGCAGGTGATTTATATCAAGCTTTGTGC
1 AACAAGCTTCGTGCAGGTGATTTATATCAAGCTTTGTGC
34247839 TGATGATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.36
Consensus pattern (41 bp):
AACAAGCTTCGTGCAGGTGATTTATATCAAGCTTTGTGCCT
Found at i:34247838 original size:25 final size:25
Alignment explanation
Indices: 34247803--34247863 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
34247793 TGTGCCTAAC
* *
34247803 AGGCTTCGTGCAGGTGATTTATATCA
1 AGGCTTTGTGCAGATGATTTATAT-A
*
34247829 A-GCTTTGTGCTGATGATTTATATA
1 AGGCTTTGTGCAGATGATTTATATA
34247853 AGGCTTTGTGC
1 AGGCTTTGTGC
34247864 CTAGAAGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.06
25 28 0.90
26 1 0.03
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.39
Consensus pattern (25 bp):
AGGCTTTGTGCAGATGATTTATATA
Found at i:34247877 original size:66 final size:66
Alignment explanation
Indices: 34247761--34247894 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 66
34247751 TTGAGTCCAA
* * *
34247761 CAAGCTTTGTGCCGGTGATTTATATCAGGTTTTGTGCCTAACAGGCTTCGTG-CAGGTGATTTAT
1 CAAGCTTTGTGCCGATGATTTATATAAGGCTTTGTGCCTAACAGGCTTCGTGTC-GGTGATTTAT
34247825 AT
65 AT
* *
34247827 CAAGCTTTGTGCTGATGATTTATATAAGGCTTTGTGCCTAGA-AGGTTTCGTGTCGGTGATTTAT
1 CAAGCTTTGTGCCGATGATTTATATAAGGCTTTGTGCCTA-ACAGGCTTCGTGTCGGTGATTTAT
34247891 AT
65 AT
34247893 CA
1 CA
34247895 GGCTCTATGC
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
66 59 0.97
67 2 0.03
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (66 bp):
CAAGCTTTGTGCCGATGATTTATATAAGGCTTTGTGCCTAACAGGCTTCGTGTCGGTGATTTATA
T
Found at i:34250398 original size:591 final size:591
Alignment explanation
Indices: 34249267--34250453 Score: 1946
Period size: 591 Copynumber: 2.0 Consensus size: 591
34249257 AAAAATTGTA
* *
34249267 AAGAAGATGAAAAACAAATATTAAGAAAAATAGGCAGAGAGGAGAAAATTTTCAGTTTAATTAGA
1 AAGAAGATGAAAAACAAAGATAAAGAAAAATAGGCAGAGAGGAGAAAATTTTCAGTTTAATTAGA
*
34249332 AAAAGAAACTATAGTTCAATTGTGTTTTGGAAAAAGGATCAAATAGTTAAAGTTTTCAAATTTTA
66 AAAAGAAACTATAGTTCAATTGTGTTTAGGAAAAAGGATCAAATAGTTAAAGTTTTCAAATTTTA
* *
34249397 AAGGGGTTGAATGGTAAATTACCAATTTAGCCAAAAAATGAAAATAAGAAGGGATTGTCATGACT
131 AAGGGGTTGAATGGTAAATTACCAATTTAGCCAAAAAATGAAAATAAAAAGGGATTGTCATAACT
** * * * *
34249462 TGAACCAAGGAATCAAAAGGAGAAATGGGAAGGCTTAACCAATTAGGTTGTTTCCCATTCTTGGT
196 TGAACCAAGGAATCAAAAGGAGAAATGCAAAGGCTTAACCAAGTAGGTTGCTCCCCATTCTTAGT
*
34249527 AAGTTTCCACTCCATTTAATATTTGTTTTAAGGGTATTTTTCATTCTAGTTTGTTGAAATTAAAA
261 AAGTTTCCACTCCATTCAATATTTGTTTTAAGGGTATTTTTCATTCTAGTTTGTTGAAATTAAAA
* * * *
34249592 GGAAATGAAATAAAAGAGGTGTAGATAGAAATTAAGACCTCTAGGGAGTGTACTAACAACTTAAC
326 AGAAATGAAATAAAAGAAGTGTAGATAGAAATTAAGACCTCTAGAGAGTGCACTAACAACTTAAC
*
34249657 CATCAAATGTAAGTCATTACTTGGTTATTTATTTCATCTAAACCCCTATATTTTGGGGCATTACA
391 CATCAAATGTAAGTCATTACTTGGTTATTTATTTCATCTAAACCCCTATATTTTGGGACATTACA
*
34249722 ATTTTAGTTTTAAATTTTAATTATAATTTGATGCATGACGTCTAAAGTTGTTTATTATTTAAAAA
456 ATTTTAGTTTTAAATTTTAATTATAATTTGATGCATGACATCTAAAGTTGTTTATTATTTAAAAA
* * ** *
34249787 AATATTATTAATGGCAAGAAAATTGTATTTAA-ACTTAATTTAAAAAATTATACTCACTTTAAAT
521 AATATTATTAACGACAAGAAAATCATATTTAAGACTTAATTTAAAAAATGATACTCACTTTAAAT
34249851 ATAAAG
586 ATAAAG
* * * *
34249857 AAGATGATGAAAAACAAAGATAAAGAGAAATAGGGAGAGAGGATAAAATTTTCAGTTTAATTAGA
1 AAGAAGATGAAAAACAAAGATAAAGAAAAATAGGCAGAGAGGAGAAAATTTTCAGTTTAATTAGA
* *
34249922 AAAAGAAACTATAGTTCAATTGTGTTTAGGAAAAAGGATTAAATAGTTAAGGTTTTCAAATTTTA
66 AAAAGAAACTATAGTTCAATTGTGTTTAGGAAAAAGGATCAAATAGTTAAAGTTTTCAAATTTTA
* *
34249987 AAGGGGTTGAATGGTAAATTACCCATTTAGCCAAAAAAATGAAAATAAAAAGGGATTGTCATAAT
131 AAGGGGTTGAATGGTAAATTACCAATTTAGCC-AAAAAATGAAAATAAAAAGGGATTGTCATAAC
* *
34250052 TTGAA-CATAGGAATCTAAGGGAGAAATGCAAAGGCTTAACCAAGTAGGTTGCTCCCCATTCTTA
195 TTGAACCA-AGGAATCAAAAGGAGAAATGCAAAGGCTTAACCAAGTAGGTTGCTCCCCATTCTTA
*
34250116 GTAAGTTTCCACTCCATTCAATATTTGTTTTAAGGGTATTTTTCATTCTAGTTTGTTTAAATTAA
259 GTAAGTTTCCACTCCATTCAATATTTGTTTTAAGGGTATTTTTCATTCTAGTTTGTTGAAATTAA
* * *
34250181 AAATAAATGAAATAAAAGAAGTGTGGATAGAACTTAAGACCTCTAGAGAGTGCACTAACAACTTA
324 AAAGAAATGAAATAAAAGAAGTGTAGATAGAAATTAAGACCTCTAGAGAGTGCACTAACAACTTA
* * *
34250246 ACCATCAAATTTAAGTCATTATTTGGTTATTTATTTCATCTAACCCCCTATATTTTGGGACATTA
389 ACCATCAAATGTAAGTCATTACTTGGTTATTTATTTCATCTAAACCCCTATATTTTGGGACATTA
** *
34250311 CGGTTTTAGTTTTAAATTTTAATTATAATTTGATGCATGACATTTAAAGTTGTTTATTATTTAAA
454 CAATTTTAGTTTTAAATTTTAATTATAATTTGATGCATGACATCTAAAGTTGTTTATTATTTAAA
*
34250376 AAATTATTATTAACGACAAGAAAATCATATTTAAGACTTAATTTAAAAAATGATACTCACTTTAA
519 AAAATATTATTAACGACAAGAAAATCATATTTAAGACTTAATTTAAAAAATGATACTCACTTTAA
34250441 ATATAAAG
584 ATATAAAG
34250449 AAGAA
1 AAGAA
34250454 AAAGACGTAT
Statistics
Matches: 549, Mismatches: 45, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
590 154 0.28
591 354 0.64
592 41 0.07
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (591 bp):
AAGAAGATGAAAAACAAAGATAAAGAAAAATAGGCAGAGAGGAGAAAATTTTCAGTTTAATTAGA
AAAAGAAACTATAGTTCAATTGTGTTTAGGAAAAAGGATCAAATAGTTAAAGTTTTCAAATTTTA
AAGGGGTTGAATGGTAAATTACCAATTTAGCCAAAAAATGAAAATAAAAAGGGATTGTCATAACT
TGAACCAAGGAATCAAAAGGAGAAATGCAAAGGCTTAACCAAGTAGGTTGCTCCCCATTCTTAGT
AAGTTTCCACTCCATTCAATATTTGTTTTAAGGGTATTTTTCATTCTAGTTTGTTGAAATTAAAA
AGAAATGAAATAAAAGAAGTGTAGATAGAAATTAAGACCTCTAGAGAGTGCACTAACAACTTAAC
CATCAAATGTAAGTCATTACTTGGTTATTTATTTCATCTAAACCCCTATATTTTGGGACATTACA
ATTTTAGTTTTAAATTTTAATTATAATTTGATGCATGACATCTAAAGTTGTTTATTATTTAAAAA
AATATTATTAACGACAAGAAAATCATATTTAAGACTTAATTTAAAAAATGATACTCACTTTAAAT
ATAAAG
Found at i:34255057 original size:25 final size:25
Alignment explanation
Indices: 34255010--34255058 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
34255000 TACATTAATC
* * **
34255010 AGAGTTTAAGTGGGAAACTAAAAAT
1 AGAGTTTAACTGAGAAAAGAAAAAT
34255035 AGAGTTTAACTGAGAAAAGAAAAA
1 AGAGTTTAACTGAGAAAAGAAAAA
34255059 GTCTAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.53, C:0.04, G:0.22, T:0.20
Consensus pattern (25 bp):
AGAGTTTAACTGAGAAAAGAAAAAT
Found at i:34259566 original size:44 final size:44
Alignment explanation
Indices: 34259503--34259593 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 44
34259493 ATAGGTCAAA
*
34259503 TAATATTAAAATAAACTACACTAATTA-AAGTTTAAGTGGGAAAC
1 TAATATTAAAATAAACTACACTAATTAGAA-TTTAAGTAGGAAAC
*
34259547 TAATATTAAAATAACCTACACTAATTAGAATTTAAGTAGGAAAC
1 TAATATTAAAATAAACTACACTAATTAGAATTTAAGTAGGAAAC
34259591 TAA
1 TAA
34259594 AAACCAGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAAACTACACTAATTAGAATTTAAGTAGGAAAC
Found at i:34261385 original size:42 final size:42
Alignment explanation
Indices: 34261335--34261461 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
34261325 CTTCATTTTC
** ** *
34261335 TCGATGCCATAGTTCAATTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
34261378 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
34261419 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
34261460 TC
1 TC
34261462 TCACTGATGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 10 0.13
42 63 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:34261488 original size:46 final size:46
Alignment explanation
Indices: 34261420--34261545 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
34261410 ATTCATATAT
* * * * *
34261420 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * * *
34261466 TGATGCCATATCCCAAATATGGTCTTATATAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATA-CGAAGCACATATCACAC
34261513 CGATGCCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
34261546 AATCACTTGT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
46 26 0.40
47 39 0.60
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:34261505 original size:88 final size:89
Alignment explanation
Indices: 34261378--34261545 Score: 196
Period size: 88 Copynumber: 1.9 Consensus size: 89
34261368 CTTCACATAA
** * *
34261378 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAT-CGATGCCATAGCCCAGCTATGG
1 TGATGCCATAGCCCAAATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
34261442 TCTTACACGAATCACATATCTCAC
66 TCTTACACGAATCACATATCTCAC
* * * *
34261466 TGATGCCATATCCCAAATATGGTCTTATATAGTA-GCATATATCACACCGATGCCATATCCCAGA
1 TGATGCCATAGCCCAAATATGGTCTTACACA-TATGCATATAT----CCGATGCCATAGCCCAGA
*
34261530 TATGGTCTTATACGAA
61 TATGGTCTTACACGAA
34261546 AATCACTTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
88 33 0.51
89 2 0.03
93 30 0.46
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (89 bp):
TGATGCCATAGCCCAAATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
TCTTACACGAATCACATATCTCAC
Found at i:34261603 original size:31 final size:31
Alignment explanation
Indices: 34261568--34261778 Score: 298
Period size: 31 Copynumber: 6.8 Consensus size: 31
34261558 CTAGTCACTT
*
34261568 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
34261599 GTAGCCGAAGCTACAAATTTTCACTTATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** *
34261630 GTAGTTGGAA-CTACTACTTTTCACTGATCAG
1 GTAG-CCGAAGCTACCACTTTTCACTGATCAG
**
34261661 GTAGCAAAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
34261692 GTAGCCGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
34261723 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
34261754 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
34261779 TGTCATTTGT
Statistics
Matches: 159, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
30 2 0.01
31 154 0.97
32 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:34261858 original size:50 final size:51
Alignment explanation
Indices: 34261754--34261882 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
34261744 CACTGATCAG
* * *
34261754 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* *
34261805 GTAGTCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
34261855 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
34261883 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:34266026 original size:30 final size:32
Alignment explanation
Indices: 34265966--34266040 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 32
34265956 ATTATTATTT
*
34265966 ATTTATATATTTTATTATAAATTATGTCCTTA
1 ATTTATATATTTTACTATAAATTATGTCCTTA
*
34265998 ATTT-TATA-TTTACTATAACTTGAT-TCCTT-
1 ATTTATATATTTTACTATAAATT-ATGTCCTTA
*
34266027 ATTTGTGATATTTT
1 ATTTAT-ATATTTT
34266041 TACAAATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 4 0.11
30 17 0.46
31 9 0.24
32 7 0.19
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.57
Consensus pattern (32 bp):
ATTTATATATTTTACTATAAATTATGTCCTTA
Found at i:34269395 original size:46 final size:46
Alignment explanation
Indices: 34269342--34269429 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
34269332 CCAAAATGAG
34269342 AAGGTCGAGTTAAAGGCTAGAGTGGCAGAATTAGAAAGGTTGCACC
1 AAGGTCGAGTTAAAGGCTAGAGTGGCAGAATTAGAAAGGTTGCACC
* *
34269388 AAGGTCGAGTTAAAGGCTAGAGTGGCAGAATTGGAATGGTTG
1 AAGGTCGAGTTAAAGGCTAGAGTGGCAGAATTAGAAAGGTTG
34269430 TTCCATCAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.10, G:0.35, T:0.22
Consensus pattern (46 bp):
AAGGTCGAGTTAAAGGCTAGAGTGGCAGAATTAGAAAGGTTGCACC
Found at i:34273498 original size:20 final size:20
Alignment explanation
Indices: 34273473--34273524 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
34273463 AAGGAACGAG
34273473 AAATGGGCCAAAAACAGAGA
1 AAATGGGCCAAAAACAGAGA
34273493 AAATGGGCCAAAAACAGAGA
1 AAATGGGCCAAAAACAGAGA
34273513 AAATGGGCCAAA
1 AAATGGGCCAAA
34273525 GTACGAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.54, C:0.15, G:0.25, T:0.06
Consensus pattern (20 bp):
AAATGGGCCAAAAACAGAGA
Found at i:34281007 original size:40 final size:38
Alignment explanation
Indices: 34280963--34281051 Score: 133
Period size: 40 Copynumber: 2.3 Consensus size: 38
34280953 TTACAACACC
34280963 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTTAT-CCC-T
* *
34281003 ACTTGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCT
1 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCT
*
34281041 ACATGGTGTGT
1 ACTTGGTGTGT
34281052 TGGATTAGAC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 11 0.24
39 3 0.07
40 32 0.70
ACGTcount: A:0.13, C:0.15, G:0.35, T:0.37
Consensus pattern (38 bp):
ACTTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCT
Found at i:34285048 original size:249 final size:249
Alignment explanation
Indices: 34284610--34285108 Score: 998
Period size: 249 Copynumber: 2.0 Consensus size: 249
34284600 TGCTTCGTTG
34284610 AGGGATTCTCGTTGATCACAGCACAGTTGACTAAGTTGTTGCGCAAAGGAGTTCCTTTTGTTTAG
1 AGGGATTCTCGTTGATCACAGCACAGTTGACTAAGTTGTTGCGCAAAGGAGTTCCTTTTGTTTAG
34284675 ACTAACGCACAGCAGGAGAGCTTCGAGAAGCTCAAAATAGTTTTGACTCTGGCTCTAGTTCTGAT
66 ACTAACGCACAGCAGGAGAGCTTCGAGAAGCTCAAAATAGTTTTGACTCTGGCTCTAGTTCTGAT
34284740 ACAGCCTGAGCCTGGTAAAGACTTCGTGGTTTACAGTGATGCGTCATATGTGGGTTTGGGTTGCG
131 ACAGCCTGAGCCTGGTAAAGACTTCGTGGTTTACAGTGATGCGTCATATGTGGGTTTGGGTTGCG
34284805 TCTTGATGTAAGACGGTAAAGTAGTAGCCTATGCGTCTCGGCAGCTTAAGACTC
196 TCTTGATGTAAGACGGTAAAGTAGTAGCCTATGCGTCTCGGCAGCTTAAGACTC
34284859 AGGGATTCTCGTTGATCACAGCACAGTTGACTAAGTTGTTGCGCAAAGGAGTTCCTTTTGTTTAG
1 AGGGATTCTCGTTGATCACAGCACAGTTGACTAAGTTGTTGCGCAAAGGAGTTCCTTTTGTTTAG
34284924 ACTAACGCACAGCAGGAGAGCTTCGAGAAGCTCAAAATAGTTTTGACTCTGGCTCTAGTTCTGAT
66 ACTAACGCACAGCAGGAGAGCTTCGAGAAGCTCAAAATAGTTTTGACTCTGGCTCTAGTTCTGAT
34284989 ACAGCCTGAGCCTGGTAAAGACTTCGTGGTTTACAGTGATGCGTCATATGTGGGTTTGGGTTGCG
131 ACAGCCTGAGCCTGGTAAAGACTTCGTGGTTTACAGTGATGCGTCATATGTGGGTTTGGGTTGCG
34285054 TCTTGATGTAAGACGGTAAAGTAGTAGCCTATGCGTCTCGGCAGCTTAAGACTC
196 TCTTGATGTAAGACGGTAAAGTAGTAGCCTATGCGTCTCGGCAGCTTAAGACTC
34285108 A
1 A
34285109 TGAAGTTAAT
Statistics
Matches: 250, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
249 250 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (249 bp):
AGGGATTCTCGTTGATCACAGCACAGTTGACTAAGTTGTTGCGCAAAGGAGTTCCTTTTGTTTAG
ACTAACGCACAGCAGGAGAGCTTCGAGAAGCTCAAAATAGTTTTGACTCTGGCTCTAGTTCTGAT
ACAGCCTGAGCCTGGTAAAGACTTCGTGGTTTACAGTGATGCGTCATATGTGGGTTTGGGTTGCG
TCTTGATGTAAGACGGTAAAGTAGTAGCCTATGCGTCTCGGCAGCTTAAGACTC
Found at i:34286482 original size:555 final size:555
Alignment explanation
Indices: 34285432--34286542 Score: 2177
Period size: 555 Copynumber: 2.0 Consensus size: 555
34285422 ATGAGTTGCA
34285432 GGTTAGGCCAACGTGGCTGGGTTAGATTAAAGATAAGCAGTTGGGAGATAAGTCTCTTGAGTTAC
1 GGTTAGGCCAACGTGGCTGGGTTAGATTAAAGATAAGCAGTTGGGAGATAAGTCTCTTGAGTTAC
34285497 AATTCTGTCAGGTTGAGGCTGGAACAACCACTGATTTTAGGATTGGCAGTGATGGGGTGTTGCGT
66 AATTCTGTCAGGTTGAGGCTGGAACAACCACTGATTTTAGGATTGGCAGTGATGGGGTGTTGCGT
34285562 TTCCGAGATAGGATCTGTGTGCCTAATGATGAGGATTTGCGATTGTCGATTCTGAGGGATGCGCA
131 TTCCGAGATAGGATCTGTGTGCCTAATGATGAGGATTTGCGATTGTCGATTCTGAGGGATGCGCA
*
34285627 TAGTAGTCCTTACACTATGCAACCTGGTGAGAATAAGATCTATAGGGATCTTCGAGAGTTATACT
196 TAGTAGTCCTTACACTATGCAACCTGGTGAGAACAAGATCTATAGGGATCTTCGAGAGTTATACT
34285692 GGTAGCCAGGGTTAAAACGTGAGGTGACCGATTTTGTTGCTTGCTGTTTAACTTGTCAGTAGGTT
261 GGTAGCCAGGGTTAAAACGTGAGGTGACCGATTTTGTTGCTTGCTGTTTAACTTGTCAGTAGGTT
34285757 AAGGCTGAGCATCAGTTACCTTCGAGTTTACTACAGCCAGTTAAGATTCCAATGTGGAAATGGGA
326 AAGGCTGAGCATCAGTTACCTTCGAGTTTACTACAGCCAGTTAAGATTCCAATGTGGAAATGGGA
*
34285822 GCGAGTAACGATGGACTTCGTTAGTGGGTTGCCTCTAACACCCACTAAGAAAGATTCTGTGTGGG
391 GCAAGTAACGATGGACTTCGTTAGTGGGTTGCCTCTAACACCCACTAAGAAAGATTCTGTGTGGG
34285887 TCGTTGTAGATCGATTGACCAAGTCTACACATTTCATTCCTGTTAGGACAGACTTTTCTTTACAG
456 TCGTTGTAGATCGATTGACCAAGTCTACACATTTCATTCCTGTTAGGACAGACTTTTCTTTACAG
*
34285952 CAGTTGGCTAAGCTTTACATTTCTAAGATAGTGAG
521 CAGTTGACTAAGCTTTACATTTCTAAGATAGTGAG
34285987 GGTTAGGCCAACGTGGCTGGGTTAGATTAAAGATAAGCAGTTGGGAGATAAGTCTCTTGAGTTAC
1 GGTTAGGCCAACGTGGCTGGGTTAGATTAAAGATAAGCAGTTGGGAGATAAGTCTCTTGAGTTAC
34286052 AATTCTGTCAGGTTGAGGCTGGAACAACCACTGATTTTAGGATTGGCAGTGATGGGGTGTTGCGT
66 AATTCTGTCAGGTTGAGGCTGGAACAACCACTGATTTTAGGATTGGCAGTGATGGGGTGTTGCGT
34286117 TTCCGAGATAGGATCTGTGTGCCTAATGATGAGGATTTGCGATTGTCGATTCTGAGGGATGCGCA
131 TTCCGAGATAGGATCTGTGTGCCTAATGATGAGGATTTGCGATTGTCGATTCTGAGGGATGCGCA
34286182 TAGTAGTCCTTACACTATGCAACCTGGTGAGAACAAGATCTATAGGGATCTTCGAGAGTTATACT
196 TAGTAGTCCTTACACTATGCAACCTGGTGAGAACAAGATCTATAGGGATCTTCGAGAGTTATACT
*
34286247 GGTAGCCAGGGTTGAAACGTGAGGTGACCGATTTTGTTGCTTGCTGTTTAACTTGTCAGTAGGTT
261 GGTAGCCAGGGTTAAAACGTGAGGTGACCGATTTTGTTGCTTGCTGTTTAACTTGTCAGTAGGTT
*
34286312 AAGGCTGAGCATCAGTTACCTTCGAGTTTACTACAGCCAGTTAAGATTCTAATGTGGAAATGGGA
326 AAGGCTGAGCATCAGTTACCTTCGAGTTTACTACAGCCAGTTAAGATTCCAATGTGGAAATGGGA
34286377 GCAAGTAACGATGGACTTCGTTAGTGGGTTGCCTCTAACACCCACTAAGAAAGATTCTGTGTGGG
391 GCAAGTAACGATGGACTTCGTTAGTGGGTTGCCTCTAACACCCACTAAGAAAGATTCTGTGTGGG
34286442 TCGTTGTAGATCGATTGACCAAGTCTACACATTTCATTCCTGTTAGGACAGACTTTTCTTTACAG
456 TCGTTGTAGATCGATTGACCAAGTCTACACATTTCATTCCTGTTAGGACAGACTTTTCTTTACAG
34286507 CAGTTGACTAAGCTTTACATTTCTAAGATAGTGAG
521 CAGTTGACTAAGCTTTACATTTCTAAGATAGTGAG
34286542 G
1 G
34286543 CTGCATGGGG
Statistics
Matches: 551, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
555 551 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (555 bp):
GGTTAGGCCAACGTGGCTGGGTTAGATTAAAGATAAGCAGTTGGGAGATAAGTCTCTTGAGTTAC
AATTCTGTCAGGTTGAGGCTGGAACAACCACTGATTTTAGGATTGGCAGTGATGGGGTGTTGCGT
TTCCGAGATAGGATCTGTGTGCCTAATGATGAGGATTTGCGATTGTCGATTCTGAGGGATGCGCA
TAGTAGTCCTTACACTATGCAACCTGGTGAGAACAAGATCTATAGGGATCTTCGAGAGTTATACT
GGTAGCCAGGGTTAAAACGTGAGGTGACCGATTTTGTTGCTTGCTGTTTAACTTGTCAGTAGGTT
AAGGCTGAGCATCAGTTACCTTCGAGTTTACTACAGCCAGTTAAGATTCCAATGTGGAAATGGGA
GCAAGTAACGATGGACTTCGTTAGTGGGTTGCCTCTAACACCCACTAAGAAAGATTCTGTGTGGG
TCGTTGTAGATCGATTGACCAAGTCTACACATTTCATTCCTGTTAGGACAGACTTTTCTTTACAG
CAGTTGACTAAGCTTTACATTTCTAAGATAGTGAG
Found at i:34288953 original size:40 final size:40
Alignment explanation
Indices: 34288909--34288985 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
34288899 TTACATTACC
34288909 ACTTGGTGTCTAGGGCTGGATGGGTCGATTTTATCCCCAT
1 ACTTGGTGTCTAGGGCTGGATGGGTCGATTTTATCCCCAT
* * *
34288949 ACTTGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCC
1 ACTTGGTGTCTAGGGCTGGATGGGTCGATTTTATCCC
34288986 TACATGGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.17, G:0.34, T:0.36
Consensus pattern (40 bp):
ACTTGGTGTCTAGGGCTGGATGGGTCGATTTTATCCCCAT
Found at i:34290735 original size:17 final size:17
Alignment explanation
Indices: 34290713--34290748 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
34290703 TATTAAAATT
*
34290713 ATTATTATGGTTTTATA
1 ATTATTATGATTTTATA
*
34290730 ATTATTATGATTTTTTA
1 ATTATTATGATTTTATA
34290747 AT
1 AT
34290749 GAATATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (17 bp):
ATTATTATGATTTTATA
Found at i:34291135 original size:23 final size:24
Alignment explanation
Indices: 34291099--34291145 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
34291089 ATAAAGAAAC
*
34291099 AAAAGGGAATAGAAACAGAAAAGA
1 AAAAGGGAATAGAAAAAGAAAAGA
*
34291123 AAAAGGGAA-AGAAAAATAAAAGA
1 AAAAGGGAATAGAAAAAGAAAAGA
34291146 GAACTAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.70, C:0.02, G:0.23, T:0.04
Consensus pattern (24 bp):
AAAAGGGAATAGAAAAAGAAAAGA
Found at i:34292300 original size:18 final size:18
Alignment explanation
Indices: 34292277--34292315 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
34292267 AAATAAAAAA
34292277 AAATT-GAATTATGAATAG
1 AAATTGGAATTATG-ATAG
*
34292295 AAATTGGAATTGTGATAG
1 AAATTGGAATTATGATAG
34292313 AAA
1 AAA
34292316 GAGAAAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.31
Consensus pattern (18 bp):
AAATTGGAATTATGATAG
Found at i:34296805 original size:20 final size:21
Alignment explanation
Indices: 34296780--34296821 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
34296770 AATATGCTGT
*
34296780 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
34296800 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
34296821 A
1 A
34296822 TAAACTACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:34297552 original size:32 final size:32
Alignment explanation
Indices: 34297510--34297624 Score: 142
Period size: 32 Copynumber: 3.6 Consensus size: 32
34297500 AAATGATACA
*
34297510 ACTTGAAAAGGTTATGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
* * *
34297542 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
**
34297574 -CATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 AC-T-TGAAAAGGTTAGGTACACTTTGTGTGTAC
*
34297607 ACTTGGAAAGGTTAGGTA
1 ACTTGAAAAGGTTAGGTA
34297625 TAATTTTTAT
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
31 1 0.01
32 41 0.60
33 25 0.37
34 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
Found at i:34297585 original size:65 final size:65
Alignment explanation
Indices: 34297525--34297682 Score: 262
Period size: 65 Copynumber: 2.4 Consensus size: 65
34297515 AAAAGGTTAT
* *
34297525 GTACACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAG
1 GTACACTTTGTGTGTACACTTGGAAAGGTTAGGTATAATTTGTATATACCATATGAAAAGGAAAG
*
34297590 GTACACTTTGTGTGTACACTTGGAAAGGTTAGGTATAATTTTTATATACCATATGAAAAGGAAAG
1 GTACACTTTGTGTGTACACTTGGAAAGGTTAGGTATAATTTGTATATACCATATGAAAAGGAAAG
* *
34297655 GTATACTTTGTGAGTACCACTTGGAAAG
1 GTACACTTTGTGTGTA-CACTTGGAAAG
34297683 TAATGTACAC
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
65 76 0.87
66 11 0.13
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (65 bp):
GTACACTTTGTGTGTACACTTGGAAAGGTTAGGTATAATTTGTATATACCATATGAAAAGGAAAG
Found at i:34297592 original size:33 final size:33
Alignment explanation
Indices: 34297555--34297666 Score: 129
Period size: 33 Copynumber: 3.4 Consensus size: 33
34297545 TGGAAAGGTT
34297555 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* * * **
34297588 AGGTACACTTTGTGTGTA-CACT-TGGAAAGGTT
1 AGGTATACTTTGTGTATACCA-TATGAAAAGGAA
* * *
34297620 AGGTATAATTTTTATATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
34297653 AGGTATACTTTGTG
1 AGGTATACTTTGTG
34297667 AGTACCACTT
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
32 23 0.38
33 37 0.62
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAA
Done.