Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 108 of 325
Found at i:34548836 original size:335 final size:330
Alignment explanation
Indices: 34548067--34548846 Score: 1143
Period size: 335 Copynumber: 2.3 Consensus size: 330
34548057 CAAAATTCAG
* * *
34548067 CGCCTTAATTCCCTAAGCAATAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA-CTCCCTAAGCAGTA
* *
34548132 GTGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
65 GCGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
* *
34548197 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTA
130 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
* * ***
34548262 ACAGGTTAAATTTGCAGATCATATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAA
195 ACAGG----ATTCGCAGATCATATCTCCCTAAGCAGTAACAGAGCAGATCGAAGACTCACCTTAA
** *
34548327 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGTTTAGTGGAGTAG
256 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGAGTAGTGGAGCAG
34548392 ATCGAAGACT
321 ATCGAAGACT
34548402 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA-CTCCCTAAGCAGTA
* * *
34548467 GTC-GAGTAGATCGAAGACTCGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTATATTTGCAGA
65 G-CGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
*
34548531 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGT
129 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGT
* **
34548596 AACAGG-TTCGCAGATCTTATCTCCCTAAGCAGTAACAGAGCAGATCGACGACGACTTGCCTTAA
194 AACAGGATTCGCAGATCATATCTCCCTAAGCAGTAACAGAGCAGATCGA--A-GACTCACCTTAA
* * *
34548660 TCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
256 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAG-AGTAGTGGAGCA
34548725 GATCGAAGACT
320 GATCGAAGACT
* *
34548736 CGCCTTAATCCCCTAAGCAGTACGGTAACAGGTTAAATTTGCAGATCTTA-TCCCTAAGCAGGAG
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTACTCCCTAAGCAGTAG
* * *
34548800 CGGAGCAGATCAAAGACGATGCACCTTAACCCCCTAAGCAGTAGGGT
66 CGGAGCAGATCGAAGAC--T-CGCCTTAATCCCCTAAGCAGTAGGGT
34548847 CCAAGATGAT
Statistics
Matches: 404, Mismatches: 32, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
330 36 0.09
331 1 0.00
332 27 0.07
333 59 0.15
334 70 0.17
335 211 0.52
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (330 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTACTCCCTAAGCAGTAG
CGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAA
CAGGATTCGCAGATCATATCTCCCTAAGCAGTAACAGAGCAGATCGAAGACTCACCTTAATCCCC
TAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGAGTAGTGGAGCAGATCGA
AGACT
Found at i:34549577 original size:14 final size:15
Alignment explanation
Indices: 34549558--34549614 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
34549548 AATCTTTAAG
34549558 GATATG-CAATCTTA
1 GATATGACAATCTTA
34549572 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
34549589 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
34549608 GATATGA
1 GATATGA
34549615 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:34549599 original size:36 final size:38
Alignment explanation
Indices: 34549558--34549650 Score: 127
Period size: 36 Copynumber: 2.4 Consensus size: 38
34549548 AATCTTTAAG
34549558 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
34549594 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
* *
34549634 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
34549651 GATTTAATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
36 23 0.46
38 7 0.14
40 9 0.18
41 11 0.22
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:34549605 original size:19 final size:19
Alignment explanation
Indices: 34549558--34549650 Score: 127
Period size: 19 Copynumber: 4.8 Consensus size: 19
34549548 AATCTTTAAG
34549558 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34549577 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34549594 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34549613 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
34549634 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
34549651 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
17 17 0.25
19 30 0.45
20 3 0.04
21 9 0.13
22 8 0.12
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:34551418 original size:43 final size:42
Alignment explanation
Indices: 34551370--34551487 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
34551360 AACTCGTACA
* **
34551370 ATGCCAATGT-CTCAGACATGGTCTTACATGTAATTAAATGTTG
1 ATGCCAATGTCCT-AGACATGGTCTTACATGTAATCAAAT-ACG
* * * *
34551413 ATGCCACTGTCCTAGACAGGGTCTTACATGAAATCATATACG
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCAAATACG
* *
34551455 ATGCCGATGTCCTAGACATGGTCTTACACGTAA
1 ATGCCAATGTCCTAGACATGGTCTTACATGTAA
34551488 ATCTCAAATC
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
42 29 0.47
43 31 0.50
44 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGTAATCAAATACG
Found at i:34556988 original size:26 final size:25
Alignment explanation
Indices: 34556959--34557013 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
34556949 ATCAAAAACA
34556959 AAAACAAAAACAAAA-CACCCCATGTC
1 AAAACAAAAACAAAATCA--CCATGTC
* *
34556985 AAAAGACAAACAAAATCACCATGTC
1 AAAACAAAAACAAAATCACCATGTC
34557010 AAAA
1 AAAA
34557014 GACAGACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 11 0.42
26 13 0.50
27 2 0.08
ACGTcount: A:0.60, C:0.25, G:0.05, T:0.09
Consensus pattern (25 bp):
AAAACAAAAACAAAATCACCATGTC
Found at i:34558589 original size:14 final size:14
Alignment explanation
Indices: 34558572--34558600 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
34558562 AATTAAGCCT
34558572 ATATCGTTAACTAA
1 ATATCGTTAACTAA
34558586 ATATCGTTAACTAA
1 ATATCGTTAACTAA
34558600 A
1 A
34558601 ATAAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (14 bp):
ATATCGTTAACTAA
Found at i:34558769 original size:11 final size:10
Alignment explanation
Indices: 34558744--34558768 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
34558734 AAAAAATCAT
34558744 AAAAATAAGC
1 AAAAATAAGC
34558754 AAAAATAAGC
1 AAAAATAAGC
34558764 AAAAA
1 AAAAA
34558769 AACAAGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAATAAGC
Found at i:34558838 original size:10 final size:9
Alignment explanation
Indices: 34558825--34559014 Score: 79
Period size: 10 Copynumber: 19.8 Consensus size: 9
34558815 TTGATGAAAA
34558825 ATAAAATATT
1 ATAAAA-ATT
*
34558835 ATAAATATT
1 ATAAAAATT
34558844 ATAAAAA-T
1 ATAAAAATT
34558852 ATAAATAAATT
1 AT-AA-AAATT
*
34558863 CTAATAAATT
1 ATAA-AAATT
34558873 ATAAAAATT
1 ATAAAAATT
34558882 AT-AAAATT
1 ATAAAAATT
34558890 AATAAAACATAT
1 -ATAAAA-AT-T
* *
34558902 TTAAAACACT
1 ATAAAA-ATT
34558912 -T-AAAATGT
1 ATAAAAAT-T
*
34558920 -TAAAAAAT
1 ATAAAAATT
34558928 ATAAAAAATCAT
1 AT-AAAAAT--T
*
34558940 AAAAAAAATT
1 -ATAAAAATT
34558950 ATAAAAAAATGT
1 AT--AAAAAT-T
34558962 -TAAAAA-T
1 ATAAAAATT
*
34558969 ATTAAAATT
1 ATAAAAATT
34558978 GATAAAAATTT
1 -ATAAAAA-TT
*
34558989 ATAAAAAAT
1 ATAAAAATT
*
34558998 ATTAAAAATC
1 A-TAAAAATT
34559008 ATAAAAA
1 ATAAAAA
34559015 CTTGAACTGG
Statistics
Matches: 142, Mismatches: 16, Indels: 45
0.70 0.08 0.22
Matches are distributed among these distances:
7 2 0.01
8 20 0.14
9 41 0.29
10 49 0.35
11 20 0.14
12 9 0.06
13 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:34558842 original size:9 final size:9
Alignment explanation
Indices: 34558828--34558895 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 9
34558818 ATGAAAAATA
34558828 AAATATTAT
1 AAATATTAT
34558837 AAATATTAT
1 AAATATTAT
*
34558846 AAA-AATAT
1 AAATATTAT
*
34558854 AAATAAATTCT
1 AAAT--ATTAT
*
34558865 AATAAATTAT
1 AA-ATATTAT
*
34558875 AAAAATTAT
1 AAATATTAT
34558884 AAA-ATTAAT
1 AAATATT-AT
34558893 AAA
1 AAA
34558896 ACATATTTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
8 10 0.20
9 27 0.55
10 6 0.12
11 5 0.10
12 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (9 bp):
AAATATTAT
Found at i:34558875 original size:21 final size:18
Alignment explanation
Indices: 34558825--34558887 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 18
34558815 TTGATGAAAA
34558825 ATAAAATATTATAAATATT
1 ATAAAA-ATTATAAATATT
34558844 ATAAAAA-TATAAATAAATT
1 ATAAAAATTATAAAT--ATT
* *
34558863 CTAATAAATTATAAAAATT
1 ATAA-AAATTATAAATATT
34558882 ATAAAA
1 ATAAAA
34558888 TTAATAAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 7 0.19
18 3 0.08
19 18 0.49
20 3 0.08
21 6 0.16
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAAAAATTATAAATATT
Found at i:34558888 original size:17 final size:17
Alignment explanation
Indices: 34558801--34558896 Score: 63
Period size: 19 Copynumber: 5.3 Consensus size: 17
34558791 TATTCAATAT
34558801 TAAAAA-TACTAAAATTGA
1 TAAAAATTA-TAAAATT-A
34558819 TGAAAAA-TA-AAATATTA
1 T-AAAAATTATAAA-ATTA
* *
34558836 TAAATATTATAAAAATA
1 TAAAAATTATAAAATTA
*
34558853 TAAATAAATTCTAATAAATTA
1 T-AA-AAATTAT-A-AAATTA
34558874 TAAAAATTATAAAATTAA
1 TAAAAATTATAAAATT-A
34558892 TAAAA
1 TAAAA
34558897 CATATTTAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
16 4 0.06
17 16 0.25
18 16 0.25
19 18 0.29
20 3 0.05
21 6 0.10
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
TAAAAATTATAAAATTA
Found at i:34558932 original size:9 final size:9
Alignment explanation
Indices: 34558920--34559014 Score: 64
Period size: 9 Copynumber: 9.7 Consensus size: 9
34558910 CTTAAAATGT
34558920 TAAAAAATA
1 TAAAAAATA
34558929 TAAAAAATCA
1 TAAAAAAT-A
34558939 TAAAAAAAATTA
1 T--AAAAAA-TA
*
34558951 TAAAAAAATG
1 T-AAAAAATA
*
34558961 TTAAAAATA
1 TAAAAAATA
* *
34558970 TTAAAATTGA
1 TAAAAAAT-A
*
34558980 TAAAAATTTA
1 TAAAAA-ATA
34558990 TAAAAAATA
1 TAAAAAATA
*
34558999 TTAAAAATCA
1 TAAAAAAT-A
34559009 TAAAAA
1 TAAAAA
34559015 CTTGAACTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
9 30 0.42
10 23 0.32
11 9 0.13
12 8 0.11
13 1 0.01
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (9 bp):
TAAAAAATA
Found at i:34558982 original size:29 final size:28
Alignment explanation
Indices: 34558921--34559014 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 28
34558911 TTAAAATGTT
*
34558921 AAAAAATATAAAAAATCATAAAAAAAATTATA
1 AAAAAATATAAAAAAT-AT---TAAAATTATA
* *
34558953 AAAAAATGTTAAAAATATTAAAATTGATA
1 AAAAAATATAAAAAATATTAAAATT-ATA
** *
34558982 AAAATTTATAAAAAATATTAAAAATCATA
1 AAAAAATATAAAAAATATT-AAAATTATA
34559011 AAAA
1 AAAA
34559015 CTTGAACTGG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 6 0.12
29 25 0.48
30 5 0.10
31 2 0.04
32 14 0.27
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (28 bp):
AAAAAATATAAAAAATATTAAAATTATA
Found at i:34561056 original size:21 final size:21
Alignment explanation
Indices: 34561010--34561057 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
34561000 AGACACGGCT
* *
34561010 ATGTGGAGATCTCACGTGTCT
1 ATGTGGAGATCTCACGTGCCC
* *
34561031 GTGTGGAGATCTCATGTGCCC
1 ATGTGGAGATCTCACGTGCCC
34561052 ATGTGG
1 ATGTGG
34561058 GACACATGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.19, G:0.33, T:0.31
Consensus pattern (21 bp):
ATGTGGAGATCTCACGTGCCC
Found at i:34562607 original size:14 final size:14
Alignment explanation
Indices: 34562588--34562617 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34562578 TTATTAAACG
*
34562588 TTACAGTTCTAATC
1 TTACAGTACTAATC
34562602 TTACAGTACTAATC
1 TTACAGTACTAATC
34562616 TT
1 TT
34562618 TACAATCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (14 bp):
TTACAGTACTAATC
Found at i:34565568 original size:12 final size:12
Alignment explanation
Indices: 34565549--34565578 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
34565539 ATTAAAATTA
34565549 AAAT-AAAATCT
1 AAATAAAAATCT
34565560 AAATAAAAATCT
1 AAATAAAAATCT
34565572 AAATAAA
1 AAATAAA
34565579 CAAAATCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAAAAATCT
Found at i:34566033 original size:75 final size:75
Alignment explanation
Indices: 34565910--34566058 Score: 271
Period size: 75 Copynumber: 2.0 Consensus size: 75
34565900 ATATATCATA
* *
34565910 TGCTCAAAATAGTTGAGTGATGAATGAGAAATTGATGCTCAAAGTAAGCTACTTGTGAATATTTG
1 TGCTCAAAATAGTTGAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
34565975 TTGAGGAAAG
66 TTGAGGAAAG
*
34565985 TGCTCAAAATGGTTGAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
1 TGCTCAAAATAGTTGAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
34566050 TTGAGGAAA
66 TTGAGGAAA
34566059 AGAAAAACTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (75 bp):
TGCTCAAAATAGTTGAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
TTGAGGAAAG
Found at i:34567995 original size:21 final size:21
Alignment explanation
Indices: 34567956--34567995 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
34567946 ACCTTCGTGC
* * *
34567956 CTTCTGTTTAGCTCTTATGAG
1 CTTCTGTTCAACTCATATGAG
34567977 CTTCTGTTCAACTCATATG
1 CTTCTGTTCAACTCATATG
34567996 TGTAACAACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.45
Consensus pattern (21 bp):
CTTCTGTTCAACTCATATGAG
Found at i:34569269 original size:42 final size:42
Alignment explanation
Indices: 34569205--34569346 Score: 151
Period size: 42 Copynumber: 3.4 Consensus size: 42
34569195 GAGATGGGAA
* * * *
34569205 TACGTGTAAGACCATATCTGGGATATGGCATCGGTATGATAT
1 TACGTGTAAGACCATGTTTGGGATATGGCATCGATATGAAAT
* * *
34569247 TACGTGGAAGACCATGTTTGGGACATGGCATCGATACGAAAT
1 TACGTGTAAGACCATGTTTGGGATATGGCATCGATATGAAAT
* * * *
34569289 TTCGTGTAAGACCATAG-TTGGGCTATTGGCATTGATATGAGAT
1 TACGTGTAAGACCAT-GTTTGGGATA-TGGCATCGATATGAAAT
*
34569332 TACATGTAAGACCAT
1 TACGTGTAAGACCAT
34569347 ATCCAGGATA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 54 0.66
43 28 0.34
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TACGTGTAAGACCATGTTTGGGATATGGCATCGATATGAAAT
Found at i:34569360 original size:85 final size:84
Alignment explanation
Indices: 34569207--34569362 Score: 188
Period size: 85 Copynumber: 1.8 Consensus size: 84
34569197 GATGGGAATA
* * * * ***
34569207 CGTGTAAGACCATATCTGGGATATGGCATCGGTATGATATTACGTGGAAGACCATGTTTGGGACA
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTACATGGAAGACCATATCCAGGACA
34569272 TGGCATCGATACGAAATTT
66 TGGCATCGATACGAAATTT
* * *
34569291 CGTGTAAGACCATAGT-TGGGCTATTGGCATTGATATGAGATTACATGTAAGACCATATCCAGGA
1 CGTGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATTACATGGAAGACCATATCCAGGA
*
34569355 TATGGCAT
64 CATGGCAT
34569363 TGTACGACTT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
84 20 0.34
85 39 0.66
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (84 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTACATGGAAGACCATATCCAGGACA
TGGCATCGATACGAAATTT
Found at i:34576244 original size:13 final size:13
Alignment explanation
Indices: 34576226--34576250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34576216 AAATATAAAT
34576226 AATTTTTCTTTTG
1 AATTTTTCTTTTG
34576239 AATTTTTCTTTT
1 AATTTTTCTTTT
34576251 CTATTTATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
AATTTTTCTTTTG
Found at i:34578232 original size:25 final size:25
Alignment explanation
Indices: 34578203--34578252 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
34578193 TCTAAGTCTA
*
34578203 ATTGTTTTATCTATAGTAACTAATC
1 ATTGTTTTATCTATAGCAACTAATC
34578228 ATTGTTTTATCTATAGCAACTAATC
1 ATTGTTTTATCTATAGCAACTAATC
34578253 TGAAATAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (25 bp):
ATTGTTTTATCTATAGCAACTAATC
Found at i:34579050 original size:12 final size:12
Alignment explanation
Indices: 34579033--34579062 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
34579023 TTCCGGAGAT
34579033 AGATACAAATGC
1 AGATACAAATGC
*
34579045 AGATACAAATTC
1 AGATACAAATGC
34579057 AGATAC
1 AGATAC
34579063 CGATGCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.17, G:0.13, T:0.20
Consensus pattern (12 bp):
AGATACAAATGC
Found at i:34579133 original size:24 final size:24
Alignment explanation
Indices: 34579106--34579152 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
34579096 CATAGGTGTG
*
34579106 GATATAGATGAAAACATAGATTCA
1 GATACAGATGAAAACATAGATTCA
* *
34579130 GATACAGATGCAGACATAGATTC
1 GATACAGATGAAAACATAGATTC
34579153 TATCCCCATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (24 bp):
GATACAGATGAAAACATAGATTCA
Found at i:34579542 original size:4 final size:4
Alignment explanation
Indices: 34579529--34579578 Score: 93
Period size: 4 Copynumber: 12.8 Consensus size: 4
34579519 CATACTTTTG
34579529 ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
34579576 ACA
1 ACA
34579579 GACAGACTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 3 0.07
4 42 0.93
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:34594653 original size:20 final size:22
Alignment explanation
Indices: 34594620--34594666 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
34594610 GCTAAAATAT
*
34594620 GGTTTTCGTAAAATAAATAAGA
1 GGTTTTCGTAAAATAAAAAAGA
34594642 GGTTTT-GT-AAATAAAAAAGA
1 GGTTTTCGTAAAATAAAAAAGA
34594662 -GTTTT
1 GGTTTT
34594667 AAAAATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 5 0.21
20 11 0.46
21 2 0.08
22 6 0.25
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (22 bp):
GGTTTTCGTAAAATAAAAAAGA
Found at i:34594672 original size:19 final size:20
Alignment explanation
Indices: 34594629--34594673 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
34594619 TGGTTTTCGT
* *
34594629 AAAATAAATAAGAGGTTTTG
1 AAAATAAAAAAGAGGTTTTA
*
34594649 TAAATAAAAAAGA-GTTTTA
1 AAAATAAAAAAGAGGTTTTA
34594668 AAAATA
1 AAAATA
34594674 TATTGGTTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (20 bp):
AAAATAAAAAAGAGGTTTTA
Found at i:34596290 original size:46 final size:46
Alignment explanation
Indices: 34596166--34596483 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
34596156 TTTGACATGA
* * * *
34596166 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
34596212 TGCCATGGTATCTTTC-A-CATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *** *
34596256 TGCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *
34596302 TGCCATGGTATCTTTCAACCATGTTCTTATTCATTTAATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
34596348 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
34596394 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
34596440 TGCCATGTTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
34596484 AGAGCACACT
Statistics
Matches: 245, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
43 4 0.02
44 32 0.13
45 2 0.01
46 207 0.84
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:34601387 original size:41 final size:41
Alignment explanation
Indices: 34601304--34601389 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
34601294 GTTAGAGCTA
* * *
34601304 TAGCGGTGTTTATGACAAAAACGCCGCAAAAGGTCAACCAT
1 TAGCAGTGTTTATGACAAAAACACCGCAAAAGATCAACCAT
* *
34601345 TAGCAGTGTTTATGA-AACAAACACCGCAAAAGATCGAGCAT
1 TAGCAGTGTTTATGACAA-AAACACCGCAAAAGATCAACCAT
34601386 TAGC
1 TAGC
34601390 GACACTTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.05
41 37 0.95
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
TAGCAGTGTTTATGACAAAAACACCGCAAAAGATCAACCAT
Found at i:34601582 original size:40 final size:39
Alignment explanation
Indices: 34601497--34601592 Score: 93
Period size: 39 Copynumber: 2.4 Consensus size: 39
34601487 AGCTTTAGTG
* **
34601497 GCATTAGCGGCGCTTTTTAAAAAACGCTGCAATAGTTGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCAATAGTCAA
* * * * *
34601536 GAATTAGTGGTGCTTTTTGAAAAACGCCGCTATAGATCAA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCAATAG-TCAA
**
34601576 GCATTAGCAACGCTTTT
1 GCATTAGCGGCGCTTTT
34601593 CAGAAAATGC
Statistics
Matches: 43, Mismatches: 13, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
39 29 0.67
40 14 0.33
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (39 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCGCAATAGTCAA
Found at i:34601796 original size:14 final size:14
Alignment explanation
Indices: 34601779--34601830 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
34601769 ATTTTTATTA
*
34601779 TTTTGGGTTTAGAG
1 TTTTTGGTTTAGAG
*
34601793 TTTTTGGTTTAGGG
1 TTTTTGGTTTAGAG
*
34601807 TTTTTAGTTTAGAG
1 TTTTTGGTTTAGAG
*
34601821 TTTGTGGTTT
1 TTTTTGGTTT
34601831 GTGGTTTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.12, C:0.00, G:0.31, T:0.58
Consensus pattern (14 bp):
TTTTTGGTTTAGAG
Found at i:34601836 original size:28 final size:29
Alignment explanation
Indices: 34601785--34601851 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
34601775 ATTATTTTGG
*
34601785 GTTTAGAGTTTTTGGTTTAGGGTTT-TTA
1 GTTTAGAGTTTGTGGTTTAGGGTTTATTA
34601813 GTTTAGAGTTTGTGGTTT-GTGGTTTATTA
1 GTTTAGAGTTTGTGGTTTAG-GGTTTATTA
* *
34601842 TTTTATAGTT
1 GTTTAGAGTT
34601852 AGGGTCGTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 22 0.65
29 11 0.32
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (29 bp):
GTTTAGAGTTTGTGGTTTAGGGTTTATTA
Found at i:34603472 original size:24 final size:24
Alignment explanation
Indices: 34603442--34603490 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
34603432 TTAAGAATGC
34603442 TGCTAACCATGTTATATATTGAAA
1 TGCTAACCATGTTATATATTGAAA
34603466 TGCTAACCATGTTATATATTGAAA
1 TGCTAACCATGTTATATATTGAAA
34603490 T
1 T
34603491 TCTAGTCACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (24 bp):
TGCTAACCATGTTATATATTGAAA
Found at i:34603503 original size:24 final size:24
Alignment explanation
Indices: 34603442--34603504 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
34603432 TTAAGAATGC
*
34603442 TGCTAACCATGTTATATATTGAAA
1 TGCTAACCACGTTATATATTGAAA
*
34603466 TGCTAACCATGTTATATATTGAAA
1 TGCTAACCACGTTATATATTGAAA
* **
34603490 TTCTAGTCACGTTAT
1 TGCTAACCACGTTAT
34603505 TTAAAAGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (24 bp):
TGCTAACCACGTTATATATTGAAA
Found at i:34605019 original size:22 final size:22
Alignment explanation
Indices: 34604994--34605044 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
34604984 ATGTCTTTAG
34604994 TCATGAATATAAATTTGAGTTT
1 TCATGAATATAAATTTGAGTTT
34605016 TCATGAATATAAATTTGAGTTT
1 TCATGAATATAAATTTGAGTTT
*
34605038 ACATGAA
1 TCATGAA
34605045 ATATGTAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (22 bp):
TCATGAATATAAATTTGAGTTT
Found at i:34610264 original size:113 final size:111
Alignment explanation
Indices: 34610161--34610361 Score: 243
Period size: 113 Copynumber: 1.8 Consensus size: 111
34610151 ACATAACATT
34610161 TATATA-AAAAAAGTAATATAA-A-AT-AAAACATAATAAGGATTATATAATAA-A-ATGTAAAA
1 TATATATAAAAAAGTAATATAATATATGAAAACATAAT-A--A-TATATAA-AAGAGATGTAAAA
*
34610220 TAATCATATAAGAAAAATAATAGATATAATATAAAGTAACATATAAAACAATA
61 TAATAATATAAGAAAAATAAT--ATATAATATAAAGTAACATATAAAACAATA
** * *
34610273 TATATATAATTAATTAATATAATATATGAAAATATAATAATATATAAAAGAGATGTAAAATAATA
1 TATATATAAAAAAGTAATATAATATATGAAAACATAATAATATATAAAAGAGATGTAAAATAATA
*
34610338 ATTTAAGAAAAATAATATATAATA
66 ATATAAGAAAAATAATATATAATA
34610362 AGTAATAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
111 10 0.13
112 14 0.18
113 40 0.52
114 1 0.01
115 3 0.04
116 9 0.12
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (111 bp):
TATATATAAAAAAGTAATATAATATATGAAAACATAATAATATATAAAAGAGATGTAAAATAATA
ATATAAGAAAAATAATATATAATATAAAGTAACATATAAAACAATA
Found at i:34610317 original size:10 final size:10
Alignment explanation
Indices: 34610269--34610380 Score: 51
Period size: 10 Copynumber: 11.3 Consensus size: 10
34610259 CATATAAAAC
34610269 AATATATATAT
1 AATA-ATATAT
34610280 AATTAAT-TA-
1 AA-TAATATAT
34610289 ATATAATATAT
1 A-ATAATATAT
*
34610300 GA-AA-ATAT
1 AATAATATAT
34610308 AATAATATAT
1 AATAATATAT
* * *
34610318 AAAAGAGATGT
1 AATA-ATATAT
34610329 AA-AATA-AT
1 AATAATATAT
* *
34610337 AATTTAAGA-AA
1 AA--TAATATAT
34610348 AATAATATAT
1 AATAATATAT
34610358 AATAAGTA-AT
1 AATAA-TATAT
34610368 AATAATATAT
1 AATAATATAT
34610378 AAT
1 AAT
34610381 TAAAAATAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 27
0.67 0.10 0.23
Matches are distributed among these distances:
8 8 0.10
9 17 0.22
10 32 0.42
11 18 0.23
12 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (10 bp):
AATAATATAT
Found at i:34610371 original size:20 final size:20
Alignment explanation
Indices: 34610269--34610380 Score: 71
Period size: 20 Copynumber: 5.7 Consensus size: 20
34610259 CATATAAAAC
*
34610269 AATATATATATAATTAATTAAT
1 AATA-ATATATAA-TAAGTAAT
34610291 -ATAATATATGAA-AA-T-AT
1 AATAATATAT-AATAAGTAAT
34610308 AATAATATATAA-AAG-AGATGT
1 AATAATATATAATAAGTA-A--T
*
34610329 AA-AATA-ATAATTTAAG-AAA
1 AATAATATATAA--TAAGTAAT
34610348 AATAATATATAATAAGTAAT
1 AATAATATATAATAAGTAAT
34610368 AATAATATATAAT
1 AATAATATATAAT
34610381 TAAAAATAAT
Statistics
Matches: 75, Mismatches: 2, Indels: 28
0.71 0.02 0.27
Matches are distributed among these distances:
17 6 0.08
18 10 0.13
19 13 0.17
20 29 0.39
21 13 0.17
22 4 0.05
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (20 bp):
AATAATATATAATAAGTAAT
Found at i:34610379 original size:17 final size:18
Alignment explanation
Indices: 34610348--34610391 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
34610338 ATTTAAGAAA
34610348 AATAAT-ATATAATAAGT
1 AATAATAATATAATAAGT
*
34610365 AATAATAATAT-ATAATT
1 AATAATAATATAATAAGT
*
34610382 AAAAATAATA
1 AATAATAATA
34610392 CTTATAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAATAATATAATAAGT
Found at i:34610388 original size:20 final size:20
Alignment explanation
Indices: 34610306--34610391 Score: 74
Period size: 20 Copynumber: 4.3 Consensus size: 20
34610296 ATATGAAAAT
34610306 ATAATAATATATAA-AAGAGA
1 ATAATAATATATAATAAGA-A
*
34610326 TGTAA-AATA-ATAATTTAAGAA
1 -ATAATAATATATAA--TAAGAA
*
34610347 A-AATAATATATAATAAGTA
1 ATAATAATATATAATAAGAA
34610366 ATAATAATATATAATTAA-AA
1 ATAATAATATATAA-TAAGAA
34610386 ATAATA
1 ATAATA
34610392 CTTATAACAA
Statistics
Matches: 54, Mismatches: 4, Indels: 15
0.74 0.05 0.21
Matches are distributed among these distances:
19 12 0.22
20 27 0.50
21 11 0.20
22 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
ATAATAATATATAATAAGAA
Found at i:34610406 original size:37 final size:32
Alignment explanation
Indices: 34610329--34610407 Score: 77
Period size: 37 Copynumber: 2.2 Consensus size: 32
34610319 AAAGAGATGT
*
34610329 AAAATAATAATTTAAGAAAAATAATATATAAT
1 AAAATAATAATTTAAGAAAAATAATATATAAC
*
34610361 AAGTAATAATAATATATAATTAAAAATAATACTTATAAC
1 AA--AATAATAAT-T-TAA-GAAAAATAATA--TATAAC
34610400 AAAATAAT
1 AAAATAAT
34610408 TTTATAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
32 2 0.05
34 9 0.24
35 1 0.03
36 3 0.08
37 16 0.42
39 7 0.18
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (32 bp):
AAAATAATAATTTAAGAAAAATAATATATAAC
Found at i:34612153 original size:83 final size:83
Alignment explanation
Indices: 34612005--34612271 Score: 378
Period size: 83 Copynumber: 3.2 Consensus size: 83
34611995 GATTTGTGGG
* * * ** * *
34612005 GATGCCAAATCCGT-TTGAGTCTGTTTTGAGAACATTCGAGAGTCATATCTGCTACGTTCTCGAT
1 GATGCCAAAT-CATCTTGAGTCTG-TTTGAGAACATTTGAGAGTCATATCTGCAATATCCTAGAT
*
34612069 TTGCTCCTTGTAAGCACAAA
64 TTGTTCCTTGTAAGCACAAA
34612089 GATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTAGATTT
1 GATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTAGATTT
34612154 GTTCCTTGTAAGCACAAA
66 GTTCCTTGTAAGCACAAA
*
34612172 GATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATTTGCAATATCCTCA-ATT
1 GATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCT-AGATT
*
34612236 TGTTCCTTGTAAACAC-AA
65 TGTTCCTTGTAAGCACAAA
*
34612254 GAATACCAAATCATCTTG
1 G-ATGCCAAATCATCTTG
34612272 GATCCGCTTC
Statistics
Matches: 169, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
82 3 0.02
83 146 0.86
84 20 0.12
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (83 bp):
GATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTAGATTT
GTTCCTTGTAAGCACAAA
Found at i:34612664 original size:119 final size:119
Alignment explanation
Indices: 34612207--34612639 Score: 695
Period size: 119 Copynumber: 3.6 Consensus size: 119
34612197 TGAGAACATT
* * * * *
34612207 TGAGAGTCATATTTGCAATATCCTCAATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
* * * *
34612272 GATCCGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATATTTGAGAATGTC
66 GATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATCTTTGAGAATGTC
* *
34612326 TGAGAGTCAAATTTTCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
* * *
34612391 GATCTACTTCAGTATAAACATCTAAAGGTTAGACCTGCTATCTTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATCTTTGAGAATGTC
34612445 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
*
34612510 GATCTGCTTTAGTATAAACATCTAAAGGTTAGATCTGCTATCTTTGAGAATGTC
66 GATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATCTTTGAGAATGTC
** * *
34612564 TGAGAGTCAAATCTGCTATGTCCTCGACATGTTTCTTGTAAACACAAAAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
34612629 GATCTGCTTCA
66 GATCTGCTTCA
34612640 ACATAAATGT
Statistics
Matches: 291, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 291 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (119 bp):
TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATCTTTGAGAATGTC
Found at i:34624820 original size:17 final size:18
Alignment explanation
Indices: 34624789--34624832 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
34624779 ATTTAAGAAA
34624789 AATAAT-ATATAATAAGT
1 AATAATAATATAATAAGT
*
34624806 AATAATAATAT-ATAATT
1 AATAATAATATAATAAGT
*
34624823 AAAAATAATA
1 AATAATAATA
34624833 CTTATAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAATAATATAATAAGT
Found at i:34624830 original size:20 final size:19
Alignment explanation
Indices: 34624659--34624832 Score: 75
Period size: 20 Copynumber: 9.2 Consensus size: 19
34624649 AAAATGTAAT
*
34624659 ATAATCATATAAGAAAAATA
1 ATAAT-ATATAATAAAAATA
* *
34624679 AT-AGATATAAT-ATAA-A
1 ATAATATATAATAAAAATA
* * *
34624695 GTAACATATAA-AACAAT-
1 ATAATATATAATAAAAATA
34624712 AT-ATATATAATTAATAAAT-
1 ATAATATATAA-TAA-AAATA
* *
34624731 ATAATATATGA-AAATATA
1 ATAATATATAATAAAAATA
34624749 ATAATATAT-ATAAAGAGATGTA
1 ATAATATATAATAAA-A-A--TA
34624771 A-AATA-ATAATTTAAGAAA-A
1 ATAATATATAA--TAA-AAATA
*
34624790 ATAATATATAATAAGTAATA
1 ATAATATATAATAA-AAATA
34624810 ATAATATATAATTAAAAATA
1 ATAATATATAA-TAAAAATA
34624830 ATA
1 ATA
34624833 CTTATAACAA
Statistics
Matches: 119, Mismatches: 14, Indels: 42
0.68 0.08 0.24
Matches are distributed among these distances:
16 9 0.08
17 18 0.15
18 22 0.18
19 14 0.12
20 35 0.29
21 12 0.10
22 4 0.03
23 4 0.03
24 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
ATAATATATAATAAAAATA
Found at i:34624847 original size:37 final size:32
Alignment explanation
Indices: 34624770--34624848 Score: 77
Period size: 37 Copynumber: 2.2 Consensus size: 32
34624760 AAAGAGATGT
*
34624770 AAAATAATAATTTAAGAAAAATAATATATAAT
1 AAAATAATAATTTAAGAAAAATAATATATAAC
*
34624802 AAGTAATAATAATATATAATTAAAAATAATACTTATAAC
1 AA--AATAATAAT-T-TAA-GAAAAATAATA--TATAAC
34624841 AAAATAAT
1 AAAATAAT
34624849 TTTATAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
32 2 0.05
34 9 0.24
35 1 0.03
36 3 0.08
37 16 0.42
39 7 0.18
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (32 bp):
AAAATAATAATTTAAGAAAAATAATATATAAC
Found at i:34626900 original size:50 final size:48
Alignment explanation
Indices: 34626828--34626927 Score: 164
Period size: 48 Copynumber: 2.0 Consensus size: 48
34626818 TGGGGACAAT
34626828 AAATTGAAAGAAAAGGAAAAGGACAAAAATTTTTTAGTTACAACGCTATA
1 AAATTGAAAGAAAAGGAAAAGGAC--AAATTTTTTAGTTACAACGCTATA
* *
34626878 AAATTGAAAGAAAAGGAAAAGGACGAGTTTTTTAGTTACAACGCTATA
1 AAATTGAAAGAAAAGGAAAAGGACAAATTTTTTAGTTACAACGCTATA
34626926 AA
1 AA
34626928 TATAGTTAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 24 0.50
50 24 0.50
ACGTcount: A:0.50, C:0.08, G:0.18, T:0.24
Consensus pattern (48 bp):
AAATTGAAAGAAAAGGAAAAGGACAAATTTTTTAGTTACAACGCTATA
Found at i:34630013 original size:43 final size:43
Alignment explanation
Indices: 34629966--34630067 Score: 150
Period size: 43 Copynumber: 2.4 Consensus size: 43
34629956 TTCAATGAAC
* * *
34629966 TCGCACACTTAGTGTCGATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* *
34630009 TCGCACACTTATTGCCAATTAATTAGCCGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
*
34630052 TCGCACACATAGTGCC
1 TCGCACACTTAGTGCC
34630068 CTTTTCTCAG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
Found at i:34636185 original size:43 final size:43
Alignment explanation
Indices: 34636121--34636225 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
34636111 TTCAACGAAC
* *
34636121 TCGCACACTTAGTGCCGATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* *
34636164 TCGCACACTTAGTGCCAATTAATTAGCCGAGGCTGTAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
34636207 TCGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
34636226 ACATTAAACC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
Found at i:34638483 original size:12 final size:11
Alignment explanation
Indices: 34638447--34638516 Score: 61
Period size: 12 Copynumber: 6.2 Consensus size: 11
34638437 AATACGATTT
34638447 TATAAAA-ATA
1 TATAAAATATA
*
34638457 TATAAAGAAATA
1 TATAAA-ATATA
34638469 TATAAAATATAA
1 TATAAAATAT-A
*
34638481 TATATAATATAA
1 TATAAAATAT-A
**
34638493 TATAATTTATA
1 TATAAAATATA
*
34638504 GATAAAATATA
1 TATAAAATATA
34638515 TA
1 TA
34638517 ATGAAATAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
10 6 0.12
11 14 0.29
12 28 0.58
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
TATAAAATATA
Found at i:34643162 original size:206 final size:206
Alignment explanation
Indices: 34642801--34643356 Score: 871
Period size: 206 Copynumber: 2.7 Consensus size: 206
34642791 AAATCTGCTT
* *
34642801 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
** * **
34642866 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGACACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
34642931 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCAATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCAATGTATCCGCCCTCCGTCGAATATG
*
34642996 GAGACGCCAAA
196 GAGACACCAAA
*
34643007 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * *
34643072 GTGAAAGCTAAATCAGCTATGAT-TTCGATTTGCTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
34643136 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCCGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCAATGTATCCGCCCTCCGTCGAATAT
*
34643201 GGTGACACCAAA
195 GGAGACACCAAA
*
34643213 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
34643278 GTGAAAGCCAAATCAGCTATGTCTTTGATTTACTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
34643343 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
34643357 CCAGATCTGC
Statistics
Matches: 319, Mismatches: 28, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
205 1 0.00
206 309 0.97
207 9 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCAATGTATCCGCCCTCCGTCGAATATG
GAGACACCAAA
Found at i:34656691 original size:26 final size:26
Alignment explanation
Indices: 34656660--34656767 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
34656650 TGAAATTCCC
*
34656660 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
34656686 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
34656712 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
34656738 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34656764 ATCA
1 ATCA
34656768 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34656940 original size:10 final size:10
Alignment explanation
Indices: 34656925--34656952 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
34656915 TAGCCTATAG
34656925 CATTTTCAAA
1 CATTTTCAAA
34656935 CATTTTCAAA
1 CATTTTCAAA
34656945 CATTTTCA
1 CATTTTCA
34656953 CATAGGTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (10 bp):
CATTTTCAAA
Found at i:34657239 original size:18 final size:18
Alignment explanation
Indices: 34657216--34657277 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
34657206 TTATTGTCGA
34657216 AAAATATATAAATATTAT
1 AAAATATATAAATATTAT
* * * *
34657234 AAAATA-ATTATTTTGTACGA
1 AAAATATATAAATAT-TA--T
34657254 AAAATATATAAATATTAT
1 AAAATATATAAATATTAT
34657272 AAAATA
1 AAAATA
34657278 ATTATTTTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
17 5 0.16
18 14 0.44
20 8 0.25
21 5 0.16
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (18 bp):
AAAATATATAAATATTAT
Found at i:34657257 original size:38 final size:38
Alignment explanation
Indices: 34657209--34657289 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
34657199 GATAAAATTA
34657209 TTGT-CGAAAAATATATAAATATTATAAAATAATTATT
1 TTGTACGAAAAATATATAAATATTATAAAATAATTATT
34657246 TTGTACGAAAAATATATAAATATTATAAAATAATTATT
1 TTGTACGAAAAATATATAAATATTATAAAATAATTATT
34657284 TTGTAC
1 TTGTAC
34657290 TTAAATTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 4 0.09
38 39 0.91
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (38 bp):
TTGTACGAAAAATATATAAATATTATAAAATAATTATT
Found at i:34657328 original size:22 final size:22
Alignment explanation
Indices: 34657303--34657346 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
34657293 AATTATTAAC
*
34657303 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
* *
34657325 ATAATAAATTTTGATTATTTTT
1 ATAATAAATTTTAATTAATTTT
34657347 TATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:34659517 original size:69 final size:69
Alignment explanation
Indices: 34659317--34659741 Score: 464
Period size: 69 Copynumber: 6.1 Consensus size: 69
34659307 ATTTCATCTT
* *
34659317 TTTATATTTGTTCTATTTATTTATTTATTTATTATTC-TTTACTTTTTAACA-ACCTAAATTTAA
1 TTTATATTTGTTTTATTTATTTATTTATTTATTATTCTTTTACTTTTTAA-ATACTTAAATTTAA
34659380 TATTA
65 TATTA
* * * * * *
34659385 TTCATATTTGTTATATCTATTTACTTATTTGTTTGTTATTCTTTTACTTTTCAAATACCTAAATT
1 TTTATATTTG-T-T-T-TATTTATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATT
34659450 TAATATTA
62 TAATATTA
*
34659458 TTTATATTTGTTTTATTTATTTATTTATTTATTATTC-TTTAGCTTTTTAAAGACTTAAATTTAA
1 TTTATATTTGTTTTATTTATTTATTTATTTATTATTCTTTTA-CTTTTTAAATACTTAAATTTAA
34659522 TATTA
65 TATTA
* * *
34659527 TTTATATTTATTATATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTTAAATACTTAAAT
1 TTTATATTT-GT-T-T-TATTTATTTATTTATTTATTATTCTTTTAC-TTTTTAAATACTTAAAT
*
34659592 TTAACATTA
61 TTAATATTA
* *** * *
34659601 TTTGTATTTGTTTTATCGCTTTATTTATTTATTATTCTTTTAATTCTTAAATACTTAAATTTAAT
1 TTTATATTTGTTTTATTTATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAAT
34659666 ATTA
66 ATTA
* * * * * * * *
34659670 --TCTATTTGTTTTATCTATTTATTCATTTATTATTTTTTTACTCTTTAAATATTTTAATTTGAT
1 TTTATATTTGTTTTATTTATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAAT
34659733 ATTA
66 ATTA
*
34659737 CTTAT
1 TTTAT
34659742 GCTTACTTTT
Statistics
Matches: 302, Mismatches: 40, Indels: 29
0.81 0.11 0.08
Matches are distributed among these distances:
67 56 0.19
68 13 0.04
69 81 0.27
70 27 0.09
71 3 0.01
72 25 0.08
73 61 0.20
74 36 0.12
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (69 bp):
TTTATATTTGTTTTATTTATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAAT
ATTA
Found at i:34659651 original size:143 final size:138
Alignment explanation
Indices: 34659317--34659697 Score: 496
Period size: 143 Copynumber: 2.7 Consensus size: 138
34659307 ATTTCATCTT
* ** *
34659317 TTTATATTTGTTCTATTTATTTATTTATTTATTATTCTTTACTTTTTAACAACCTAAATTTAATA
1 TTTATATTTGTTTTATCGATTTATTTATTTATTATTCTTTACTTTTTAA-AACTTAAATTTAATA
* *
34659382 TTATTCATATTTGTTATATCTATTTACTTATTTGTTTGTTATTCTTTTACTTTTCAAATACCTAA
65 TTATTTATATTT-TTATATCTATTTA-TTATTTGTTTATTATTCTTTTACTTTTCAAATACCTAA
*
34659447 ATTTAATATTA
128 ATTTAACATTA
**
34659458 TTTATATTTGTTTTATTTATTTATTTATTTATTATTCTTTAGCTTTTTAAAGACTTAAATTTAAT
1 TTTATATTTGTTTTATCGATTTATTTATTTATTATTCTTTA-CTTTTTAAA-ACTTAAATTTAAT
* *
34659523 ATTATTTATATTTATTATATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTTAAATACTT
64 ATTATTTATATTT-TTATATCTATTTATT-ATTTGTTTATTATTCTTTTAC-TTTTCAAATACCT
34659588 AAATTTAACATTA
126 AAATTTAACATTA
* * * *
34659601 TTTGTATTTGTTTTATCGCTTTATTTATTTATTATTCTTTTAATTCTTAAATACTTAAATTTAAT
1 TTTATATTTGTTTTATCGATTTATTTATTTATTATTC-TTTACTTTTTAAA-ACTTAAATTTAAT
*
34659666 ATTATCTAT-TTGTTT-TATCTATTTATTCATTT
64 ATTATTTATATT-TTTATATCTATTTATT-ATTT
34659698 ATTATTTTTT
Statistics
Matches: 217, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
141 59 0.27
142 69 0.32
143 85 0.39
144 4 0.02
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (138 bp):
TTTATATTTGTTTTATCGATTTATTTATTTATTATTCTTTACTTTTTAAAACTTAAATTTAATAT
TATTTATATTTTTATATCTATTTATTATTTGTTTATTATTCTTTTACTTTTCAAATACCTAAATT
TAACATTA
Found at i:34663534 original size:28 final size:28
Alignment explanation
Indices: 34663481--34663564 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
34663471 CACTTTGTGC
34663481 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
34663510 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
34663538 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
34663565 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:34663576 original size:23 final size:24
Alignment explanation
Indices: 34663485--34663578 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
34663475 TTGTGCTATT
34663485 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
34663512 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
34663542 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
34663565 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
34663579 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:34672057 original size:104 final size:104
Alignment explanation
Indices: 34671872--34672104 Score: 245
Period size: 104 Copynumber: 2.2 Consensus size: 104
34671862 TGCCACACGG
* * * * * *
34671872 CCTGGACACATGCCCATGTCCTTTCTCGTGTGGCTCACATAGCCTGGGCACACGCCCATGTCGTC
1 CCTGGACACATGCCCATGTCCTTGCTAGTGTGACTCACACAGCCTGGGCACAAGCCCATGTCGCC
*
34671937 TACCCGTGTAGTCTAAATAGTAAACAATGAGTTACATGA
66 TACCCGTGAAGTCTAAATAGTAAACAATGAGTTACATGA
* * *
34671976 CCTGGACATATGCCCATGTCCTTGCTAGTGTGACTTACACGGCCTGGGCACAAGCCCATGTC-CC
1 CCTGGACACATGCCCATGTCCTTGCTAGTGTGACTCACACAGCCTGGGCACAAGCCCATGTCGCC
** * * *** *
34672040 TAGTCGT-AAGGTCCTAAATCGTAAATAGCAAGTTACATGG
66 TACCCGTGAA-GT-CTAAATAGTAAACAATGAGTTACATGA
* **
34672080 CCTGGATACACACCCATGTCCTTGC
1 CCTGGACACATGCCCATGTCCTTGC
34672105 CCATGTAAAC
Statistics
Matches: 105, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
102 1 0.01
103 8 0.08
104 96 0.91
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (104 bp):
CCTGGACACATGCCCATGTCCTTGCTAGTGTGACTCACACAGCCTGGGCACAAGCCCATGTCGCC
TACCCGTGAAGTCTAAATAGTAAACAATGAGTTACATGA
Found at i:34672507 original size:22 final size:22
Alignment explanation
Indices: 34672479--34672522 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
34672469 GGATTTGTGG
34672479 GAGGAAAATAAAGGGTGGTTAT
1 GAGGAAAATAAAGGGTGGTTAT
34672501 GAGGAAAATAAAGGGTGGTTAT
1 GAGGAAAATAAAGGGTGGTTAT
34672523 CTCATCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.36, T:0.23
Consensus pattern (22 bp):
GAGGAAAATAAAGGGTGGTTAT
Found at i:34678540 original size:63 final size:65
Alignment explanation
Indices: 34678434--34678561 Score: 172
Period size: 63 Copynumber: 2.0 Consensus size: 65
34678424 AATTGCTCAA
* *
34678434 CTTAAAGCGGAGGCAGCATCGAGAGAAGCAGAGGCTCAAAGAAAATA-T-GAACTCCAGCTACAC
1 CTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCTAAAAGAAAATAGTCGAACTCCAGCTACAC
* * *
34678497 CTTAAAGCGGATGTAGCAGCGAGGGAAGCAGAGGC-AAACAGAAAATATGTCGAACTCCAGCTAC
1 CTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCTAAA-AGAAAATA-GTCGAACTCCAGCTAC
34678561 A
64 A
34678562 ACTTCAGAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
62 2 0.04
63 39 0.70
65 1 0.02
66 14 0.25
ACGTcount: A:0.39, C:0.21, G:0.27, T:0.13
Consensus pattern (65 bp):
CTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCTAAAAGAAAATAGTCGAACTCCAGCTACAC
Found at i:34690000 original size:14 final size:14
Alignment explanation
Indices: 34689981--34690008 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34689971 TCCACAACCC
34689981 TGGTTAAAAGGCTA
1 TGGTTAAAAGGCTA
34689995 TGGTTAAAAGGCTA
1 TGGTTAAAAGGCTA
34690009 GGCAAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
TGGTTAAAAGGCTA
Found at i:34692128 original size:17 final size:17
Alignment explanation
Indices: 34692088--34692120 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34692078 CTCCAAAAGT
34692088 GCTTTTGGAAAAAAATA
1 GCTTTTGGAAAAAAATA
*
34692105 GCTTTTGTAAAAAAAT
1 GCTTTTGGAAAAAAAT
34692121 CACTTTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (17 bp):
GCTTTTGGAAAAAAATA
Found at i:34696491 original size:15 final size:15
Alignment explanation
Indices: 34696471--34696578 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
34696461 TTTATGGAAA
34696471 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
34696486 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
34696500 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
34696516 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
*
34696530 AGTTAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
34696546 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
34696560 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
34696576 ATC
1 ATC
34696579 GAGATATTGG
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 12 0.18
15 41 0.63
16 12 0.18
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:34696508 original size:30 final size:30
Alignment explanation
Indices: 34696465--34696588 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
34696455 TCCATATTTA
* *
34696465 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
34696495 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
34696525 TGGAAAGTTAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
34696555 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
34696586 TGG
1 TGG
34696589 CATAATAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 78 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:34701178 original size:15 final size:15
Alignment explanation
Indices: 34701158--34701265 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
34701148 TTTATGGAAA
34701158 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
34701173 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
34701187 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
34701203 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
34701217 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* * **
34701233 ATCAAATAT-TAGAA
1 ATCAAAGATATGGGT
34701247 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
34701263 ATC
1 ATC
34701266 GAGATATTGG
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 43 0.66
16 11 0.17
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:34701195 original size:30 final size:30
Alignment explanation
Indices: 34701154--34701265 Score: 197
Period size: 30 Copynumber: 3.7 Consensus size: 30
34701144 CATATTTATG
* *
34701154 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATATTA
*
34701184 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATATTA
34701214 GAAAGTCAAAGATATGGGTATCAAATATTA
1 GAAAGTCAAAGATATGGGTATCAAATATTA
34701244 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
34701266 GAGATATTGG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.25
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATATTA
Found at i:34709316 original size:74 final size:74
Alignment explanation
Indices: 34709195--34709342 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
34709185 AACAGATACA
* * *
34709195 CAAAAGAACCATCACTGTTTTTCTTAAAGTAAACACAACTTTCAAAACTACTTCTTTTGAAATCA
1 CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
34709260 TGAGAAGTC
66 TGAGAAGTC
34709269 CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
1 CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
34709334 TGAGAAGTC
66 TGAGAAGTC
34709343 ATAAAGGAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (74 bp):
CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
TGAGAAGTC
Found at i:34713785 original size:35 final size:35
Alignment explanation
Indices: 34713746--34713821 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
34713736 CCCCTTTTGA
** * *
34713746 GGTGTCGCCTTAAAGGACTTGCATACCATTTACAT
1 GGTGTCGCCCCAAAGGACTTACATACCATTTACAC
*
34713781 GGTGTCGCCCCGAAGGACTTACATACCATTTACAC
1 GGTGTCGCCCCAAAGGACTTACATACCATTTACAC
34713816 GGTGTC
1 GGTGTC
34713822 ACGCCGAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (35 bp):
GGTGTCGCCCCAAAGGACTTACATACCATTTACAC
Found at i:34713829 original size:35 final size:35
Alignment explanation
Indices: 34713758--34713829 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
34713748 TGTCGCCTTA
* * *
34713758 AAGGACTTGCATACCATTTACATGGTGTCGCCCCG
1 AAGGACTTACATACCATTTACACGGTGTCACCCCG
*
34713793 AAGGACTTACATACCATTTACACGGTGTCACGCCG
1 AAGGACTTACATACCATTTACACGGTGTCACCCCG
34713828 AA
1 AA
34713830 AAACCTATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (35 bp):
AAGGACTTACATACCATTTACACGGTGTCACCCCG
Found at i:34713842 original size:35 final size:35
Alignment explanation
Indices: 34713767--34713855 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
34713757 AAAGGACTTG
* ** *
34713767 CATACCATTTACATGGTGTCGCCCCGAAGGACTTA
1 CATACCATTTACATGGTGTCACCCCGAAAAACCTA
* *
34713802 CATACCATTTACACGGTGTCACGCCGAAAAACCTA
1 CATACCATTTACATGGTGTCACCCCGAAAAACCTA
* *
34713837 TATACCGTTTACATGGTGT
1 CATACCATTTACATGGTGT
34713856 TTCCCTGAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (35 bp):
CATACCATTTACATGGTGTCACCCCGAAAAACCTA
Found at i:34723913 original size:19 final size:19
Alignment explanation
Indices: 34723889--34723969 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
34723879 AATCTTTAAG
* *
34723889 GATATGCAATATTAGAGAT
1 GATATGCAATCTTAGATAT
34723908 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34723927 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34723946 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
34723967 GAT
1 GAT
34723970 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
19 49 0.84
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:34724503 original size:25 final size:25
Alignment explanation
Indices: 34724475--34724523 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
34724465 GTGCATAGTT
34724475 TTATTT-TTTTATATGCTATGTTTAA
1 TTATTTCTTTTATATGCTAT-TTTAA
*
34724500 TTATTTCTTTTATGTGCTATTTTA
1 TTATTTCTTTTATATGCTATTTTA
34724524 TGATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.65
Consensus pattern (25 bp):
TTATTTCTTTTATATGCTATTTTAA
Found at i:34729563 original size:16 final size:15
Alignment explanation
Indices: 34729542--34729610 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 15
34729532 CTATTTCAAA
34729542 AAAAAAGGAAAAAAAG
1 AAAAAAGG-AAAAAAG
34729558 AAAAAAAAGAGAAAAAA-
1 --AAAAAAG-GAAAAAAG
34729575 ATAAAAA-GAAAAAAG
1 A-AAAAAGGAAAAAAG
*
34729590 AGAAAAATGAAAAAAG
1 A-AAAAAGGAAAAAAG
34729606 AAAAA
1 AAAAA
34729611 TGGAGAGGCC
Statistics
Matches: 46, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
14 7 0.15
15 11 0.24
16 14 0.30
18 13 0.28
19 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (15 bp):
AAAAAAGGAAAAAAG
Found at i:34729563 original size:18 final size:19
Alignment explanation
Indices: 34729540--34729604 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 19
34729530 TTCTATTTCA
34729540 AAAAAAAAG-GAAAAAAAG
1 AAAAAAAAGAGAAAAAAAG
*
34729558 AAAAAAAAGAGAAAAAAATA
1 AAAAAAAAGAGAAAAAAA-G
* *
34729578 AAAAGAAAAAAGAGAAAAATG
1 AAAA-AAAAGAGA-AAAAAAG
34729599 AAAAAA
1 AAAAAA
34729605 GAAAAATGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 9 0.23
19 8 0.21
20 6 0.15
21 11 0.28
22 5 0.13
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (19 bp):
AAAAAAAAGAGAAAAAAAG
Found at i:34729563 original size:19 final size:20
Alignment explanation
Indices: 34729539--34729604 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 20
34729529 CTTCTATTTC
34729539 AAAAAAAAAG-GAAAAAAAG
1 AAAAAAAAAGAGAAAAAAAG
*
34729558 -AAAAAAAAGAGAAAAAAAT
1 AAAAAAAAAGAGAAAAAAAG
* *
34729577 AAAAAGAAAAAAGAGAAAAATG
1 AAAAA-AAAAGAGA-AAAAAAG
34729599 AAAAAA
1 AAAAAA
34729605 GAAAAATGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 9 0.23
19 8 0.21
20 4 0.10
21 8 0.21
22 10 0.26
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAGAGAAAAAAAG
Found at i:34729575 original size:14 final size:15
Alignment explanation
Indices: 34729542--34729610 Score: 60
Period size: 14 Copynumber: 4.9 Consensus size: 15
34729532 CTATTTCAAA
34729542 AAAAAAG-GAAAAA-
1 AAAAAAGAGAAAAAG
*
34729555 AAGAAAA-A-AAAGAG
1 AA-AAAAGAGAAAAAG
*
34729569 AAAAAA-ATAAAAAG
1 AAAAAAGAGAAAAAG
34729583 AAAAAAGAGAAAAATG
1 AAAAAAGAGAAAAA-G
34729599 AAAAAAGA-AAAA
1 AAAAAAGAGAAAA
34729611 TGGAGAGGCC
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
13 11 0.23
14 17 0.36
15 10 0.21
16 9 0.19
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (15 bp):
AAAAAAGAGAAAAAG
Found at i:34729586 original size:23 final size:23
Alignment explanation
Indices: 34729550--34729610 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
34729540 AAAAAAAAGG
34729550 AAAAAAAGAAAAAAAAGAGAAAAA-
1 AAAAAAAG--AAAAAAGAGAAAAAT
34729574 AATAAAAAGAAAAAAGAGAAAAAT
1 AA-AAAAAGAAAAAAGAGAAAAAT
*
34729598 GAAAAAAGAAAAA
1 AAAAAAAGAAAAA
34729611 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 25 0.74
24 3 0.09
25 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (23 bp):
AAAAAAAGAAAAAAGAGAAAAAT
Found at i:34729604 original size:9 final size:8
Alignment explanation
Indices: 34729541--34729610 Score: 65
Period size: 9 Copynumber: 8.6 Consensus size: 8
34729531 TCTATTTCAA
34729541 AAAAAAAGG
1 AAAAAAA-G
34729550 AAAAAAAG
1 AAAAAAAG
34729558 AAAAAAAAG
1 -AAAAAAAG
34729567 AGAAAAAA-
1 A-AAAAAAG
*
34729575 ATAAAAAG
1 AAAAAAAG
34729583 -AAAAAAG
1 AAAAAAAG
*
34729590 AGAAAAATG
1 A-AAAAAAG
34729599 -AAAAAAG
1 AAAAAAAG
34729606 AAAAA
1 AAAAA
34729611 TGGAGAGGCC
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
7 17 0.33
8 7 0.14
9 27 0.53
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:34730662 original size:44 final size:44
Alignment explanation
Indices: 34730557--34731066 Score: 446
Period size: 44 Copynumber: 11.6 Consensus size: 44
34730547 TATTTCAACA
** *
34730557 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG-CA
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* *
34730600 TGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGATAGTAGACT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* *
34730644 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGA-T
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* * * * * * ** *
34730687 CTGACATTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTCAG-CA
1 -TGGCATCCCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAGACT
34730732 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* * *
34730776 TGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGCAGA-T
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
** * * * * * ** *
34730819 CTAACATTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTCAG-CA
1 -TGGCATCCCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAGACT
*
34730864 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* * *
34730908 TGGCATCCCTGTGTTTATAGGAAACAAATCGAAGATAGCAGA-T
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* * * * * ** *
34730951 CTGACATTCCTGTGCTTACAGCGAAGC-AGATTGAAGATTTCAG-CA
1 -TGGCATCCCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAGACT
* *
34730996 TGGTATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
* * * *
34731040 TGGCATCCTTGTGCTTACAAGGAACAA
1 TGGCATCCCTGTGTTTATAGGGAACAA
34731067 ATCGAAGACA
Statistics
Matches: 367, Mismatches: 81, Indels: 37
0.76 0.17 0.08
Matches are distributed among these distances:
43 74 0.20
44 258 0.70
45 35 0.10
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACT
Found at i:34730750 original size:132 final size:132
Alignment explanation
Indices: 34730587--34731074 Score: 861
Period size: 132 Copynumber: 3.7 Consensus size: 132
34730577 GGAACAAGTT
* *
34730587 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGATAGTAGACTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
*
34730652 CTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
66 CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
34730717 TC
131 TC
34730719 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
*
34730784 CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTAACATTCCTGTGCTTACAGCGAAGCAGA
66 CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
34730849 TC
131 TC
*
34730851 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
34730916 CTGTGTTTAT-AGGAAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAG
66 CTGTGTTTATAAGG-AACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAG
*
34730980 ATT
130 ATC
* *
34730983 GAAGATTTCAGCATGGTATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
* * *
34731048 TTGTGCTTACAAGGAACAAATCGAAGA
66 CTGTGTTTATAAGGAACAAATCGAAGA
34731075 CATAACTGAT
Statistics
Matches: 343, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
131 3 0.01
132 337 0.98
133 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
TC
Found at i:34730757 original size:88 final size:87
Alignment explanation
Indices: 34730469--34731074 Score: 500
Period size: 88 Copynumber: 6.9 Consensus size: 87
34730459 AAACAAGATT
* * * * *
34730469 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTGCAAC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACAGC
* *
34730534 GAAGCAGATCGAATATTTCAACA
66 GAA-CAGATCGAAGATTTCAGCA
* * ** * * *
34730557 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG--CATGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC-TGGCATTCCTGTGCTTACAG
* * * *
34730620 AGAACA-AGTTGAAGATAGT-AGACT
65 CGAACAGA-TCGAAGAT-TTCAG-CA
*
34730644 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACAGC
34730709 GAAGCAGATCGAAGATTTCAGCA
66 GAA-CAGATCGAAGATTTCAGCA
* * * * *
34730732 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA-CTTGGCATCCCTGTGTTTATAA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC-TGGCATTCCTGTGCTTA-CA
* **
34730796 G-GAACAAATCGAAGATAGCAG-A
64 GCGAACAGATCGAAGATTTCAGCA
** * * * * * ** * *
34730818 TCTAACATTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG--CATGGCATCCCTGTGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAGATC-TGGCATTCCTGTGCTTA
* * * **
34730881 TAGGGAACA-AGTTGAAGATAGCAG-A
62 CAGCGAACAGA-TCGAAGATTTCAGCA
* *
34730906 TTTGGCATCCCTGTGTTTATAGGAAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACA
1 --TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACA
*
34730971 GCGAAGCAGATTGAAGATTTCAGCA
64 GCGAA-CAGATCGAAGATTTCAGCA
* * * *
34730996 TGGTATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCA-TCCTTGTGCTTACAA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCC-TGTGCTTAC-A
*
34731060 G-GAACAAATCGAAGA
64 GCGAACAGATCGAAGA
34731075 CATAACTGAT
Statistics
Matches: 416, Mismatches: 79, Indels: 47
0.77 0.15 0.09
Matches are distributed among these distances:
85 1 0.00
86 11 0.03
87 98 0.24
88 261 0.63
89 42 0.10
90 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACAGC
GAACAGATCGAAGATTTCAGCA
Found at i:34730759 original size:175 final size:176
Alignment explanation
Indices: 34730468--34730813 Score: 570
Period size: 175 Copynumber: 2.0 Consensus size: 176
34730458 GAAACAAGAT
*
34730468 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTGCAA
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACAA
* **
34730533 CGAAGCAGATCGAATATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG
66 CGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* *
34730598 -CATGGCATCCCTGTGTTTAT-AGAGAACAAGTTGAAGATAGTAGAC
131 ACATGGCATCCCTGTGTTTATAAG-GAACAAATCGAAGATAGTAGAC
* * *
34730643 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAG
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACAA
*
34730708 CGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
66 CGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
*
34730773 ACTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAG
131 ACATGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAG
34730814 CAGATCTAAC
Statistics
Matches: 158, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
175 122 0.77
176 34 0.22
177 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (176 bp):
TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACAA
CGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
ACATGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGTAGAC
Found at i:34731669 original size:206 final size:206
Alignment explanation
Indices: 34731036--34731982 Score: 1540
Period size: 206 Copynumber: 4.6 Consensus size: 206
34731026 GAAGATAGCA
* *
34731036 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
34731100 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
34731165 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAGCCTTCATATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
34731230 AGATCCAAGGT
196 AGATCCAAGAT
* *
34731241 GATTTGGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
34731306 TACGATGAAGCAAATCTAAGATGATTT-GCATC-CTTGTATTGTCAGAGAACAAATCGAAGTTTG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTC-TGTATTGTCAGAGAACAAATCGAAGTTTG
* ** *
34731369 GCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAG
130 GCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAG
*
34731434 CAGATCCAAGGT
195 CAGATCCAAGAT
34731446 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
34731511 TACGATGAAGCAAATCTGAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* **
34731576 CGTCTCCATATTTGACGGAGAGTGGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
34731641 AGATCCAAGAT
196 AGATCCAAGAT
* *
34731652 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACTTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
34731717 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * * * *
34731782 CGTCTCCATATTCGACTGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTAAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
34731847 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * * * *
34731858 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGTTAATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
34731923 TACGATGAAGCAAATCTAAGATGATTTTGCATCTCTGTATTGTCAGAAAACAAATCGAAG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
34731983 ATAACAGATT
Statistics
Matches: 696, Mismatches: 42, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
204 1 0.00
205 257 0.37
206 437 0.63
207 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:34732022 original size:15 final size:15
Alignment explanation
Indices: 34731994--34732027 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
34731984 TAACAGATTT
* *
34731994 GACGTTTCTGTATTA
1 GACGTCTCTATATTA
34732009 GACGTCTCTATATTA
1 GACGTCTCTATATTA
34732024 GACG
1 GACG
34732028 GGAAGCAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (15 bp):
GACGTCTCTATATTA
Found at i:34732405 original size:19 final size:19
Alignment explanation
Indices: 34732381--34732467 Score: 133
Period size: 19 Copynumber: 4.7 Consensus size: 19
34732371 AATCTTTAAG
34732381 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
34732400 GATATGGAATCCTAGATAT
1 GATATGCAATCTTAGATAT
34732419 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34732436 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
34732455 GATATGCAGTCTT
1 GATATGCAATCTT
34732468 GAAAATATGA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
17 15 0.25
19 46 0.75
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:34732428 original size:36 final size:36
Alignment explanation
Indices: 34732387--34732458 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
34732377 TAAGGATATG
*
34732387 CAATCTTAGATATGATATGGAATCCTAGATATGATA
1 CAATCTTAGATATGATATGCAATCCTAGATATGATA
*
34732423 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCCTAGATATGATA
34732459 TGCAGTCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCCTAGATATGATA
Found at i:34732477 original size:21 final size:19
Alignment explanation
Indices: 34732381--34732480 Score: 105
Period size: 19 Copynumber: 5.3 Consensus size: 19
34732371 AATCTTTAAG
*
34732381 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAAATAT
* * *
34732400 GATATGGAATCCTAGATAT
1 GATATGCAATCTTAAATAT
*
34732419 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAAATAT
*
34732436 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAAATAT
*
34732455 GATATGCAGTCTTGAAAATAT
1 GATATGCAATCTT--AAATAT
34732476 GATAT
1 GATAT
34732481 TGTAATCTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.21
19 46 0.65
21 10 0.14
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAAATAT
Found at i:34733012 original size:25 final size:25
Alignment explanation
Indices: 34732984--34733032 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
34732974 GTGCATAGTT
34732984 TTATTT-TTTTATATGCTATGTTTAA
1 TTATTTCTTTTATATGCTAT-TTTAA
*
34733009 TTATTTCTTTTATGTGCTATTTTA
1 TTATTTCTTTTATATGCTATTTTA
34733033 TGATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.65
Consensus pattern (25 bp):
TTATTTCTTTTATATGCTATTTTAA
Found at i:34736543 original size:13 final size:13
Alignment explanation
Indices: 34736507--34736567 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 13
34736497 TAAAAAATGC
34736507 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
* *
34736520 TGTGGAAAAGTGT
1 TTTTGAAAAGTGT
* **
34736533 TTTTGAGAAGTAC
1 TTTTGAAAAGTGT
*
34736546 TTTTGAGAAGTGT
1 TTTTGAAAAGTGT
*
34736559 TTTGGAAAA
1 TTTTGAAAA
34736568 ATTTAAGTGT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.31, C:0.02, G:0.28, T:0.39
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:34747476 original size:40 final size:40
Alignment explanation
Indices: 34747419--34747612 Score: 268
Period size: 40 Copynumber: 4.9 Consensus size: 40
34747409 ATATTTGATG
34747419 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAAT
* *
34747459 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAAT
* * **
34747499 TGTATTCGGACTT-AAGGTCCGCAGGCTTCATGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAAT
*
34747538 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAAT
* * *
34747578 TGTATCCGGACTT-AAGATCCGCAGGCTTCGTGCTG
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTG
34747613 ATACTATATC
Statistics
Matches: 137, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 56 0.41
40 81 0.59
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
TGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAAT
Found at i:34747532 original size:79 final size:79
Alignment explanation
Indices: 34747419--34747647 Score: 311
Period size: 79 Copynumber: 2.9 Consensus size: 79
34747409 ATATTTGATG
* *
34747419 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCA
1 TGTATCCGGACTT-AAGATCCGCAGGCT-TCATGCTGGAATTATATCCGGGCTTAAAGACCCGCA
34747483 GGCTTCGTGCTGGAAT
64 GGCTTCGTGCTGGAAT
* * *
34747499 TGTATTCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGG
1 TGTATCCGGACTTAAGATCCGCAGGCTTCATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGG
34747564 CTTCGTGCTGGAAT
66 CTTCGTGCTGGAAT
* * * * **
34747578 TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCT-GATACTATATCCGGACAT-AAGGTCCGCAG
1 TGTATCCGGACTTAAGATCCGCAGGCTTCATGCTGGA-ATTATATCCGGGCTTAAAGACCCGCAG
34747641 GCTTCGT
65 GCTTCGT
34747648 ACTAGTACTA
Statistics
Matches: 133, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
78 19 0.14
79 103 0.77
80 11 0.08
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (79 bp):
TGTATCCGGACTTAAGATCCGCAGGCTTCATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGG
CTTCGTGCTGGAAT
Found at i:34747533 original size:39 final size:39
Alignment explanation
Indices: 34747419--34747647 Score: 264
Period size: 39 Copynumber: 5.8 Consensus size: 39
34747409 ATATTTGATG
* * *
34747419 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
1 TGTATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAAT
* * *
34747459 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAAT
* * *
34747499 TGTATTCGGACTTAAGGTCCGCAGGCTTCATGCTGGAAT
1 TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAAT
* *
34747538 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAAT
*
34747578 TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCT-GATAC
1 TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGA-AT
* * *
34747617 TATATCCGGACATAAGGTCCGCAGGCTTCGT
1 TGTATCCGGACTTAAGATCCGCAGGCTTCGT
34747648 ACTAGTACTA
Statistics
Matches: 167, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 84 0.50
40 81 0.49
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAAT
Found at i:34758139 original size:12 final size:12
Alignment explanation
Indices: 34758122--34758150 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
34758112 ATTTTTCATT
34758122 AAAACGCCGCTA
1 AAAACGCCGCTA
34758134 AAAACGCCGCTA
1 AAAACGCCGCTA
34758146 AAAAC
1 AAAAC
34758151 CTATTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.31, G:0.14, T:0.07
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:34764655 original size:18 final size:19
Alignment explanation
Indices: 34764629--34764666 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
34764619 AGCAATGTGT
34764629 ATACCCCACAAC-AAATGG
1 ATACCCCACAACAAAATGG
*
34764647 ATACTCCACAACAAAATGG
1 ATACCCCACAACAAAATGG
34764666 A
1 A
34764667 GTGACTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.47, C:0.29, G:0.11, T:0.13
Consensus pattern (19 bp):
ATACCCCACAACAAAATGG
Found at i:34768396 original size:19 final size:19
Alignment explanation
Indices: 34768350--34768397 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
34768340 GTATATATTT
34768350 TAAA-TTTATTTAGATAGA
1 TAAATTTTATTTAGATAGA
* *
34768368 TAAATCTTATTTGGATAGA
1 TAAATTTTATTTAGATAGA
*
34768387 TAAGTTTTATT
1 TAAATTTTATT
34768398 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGATAGA
Found at i:34768459 original size:43 final size:43
Alignment explanation
Indices: 34768411--34768503 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
34768401 ATTCTAGAAA
34768411 TATTTT-TATTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
* * *
34768454 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
34768497 TATTTTC
1 TATTTTC
34768504 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
Found at i:34773130 original size:19 final size:19
Alignment explanation
Indices: 34773084--34773131 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
34773074 GTATATATTT
34773084 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
34773102 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
34773121 TAAGTTTTATT
1 TAAATTTTATT
34773132 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:34773193 original size:43 final size:43
Alignment explanation
Indices: 34773145--34773237 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
34773135 ATTCTAGAAA
34773145 TATTTT-TATTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
* * **
34773188 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGGATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
34773231 TATTTTC
1 TATTTTC
34773238 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
Found at i:34777774 original size:21 final size:21
Alignment explanation
Indices: 34777711--34777774 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
34777701 TTTGGTTGGA
* *
34777711 TCAACTCTTTTAAGCTTCTCT
1 TCAACTCTTTTGAGCTTCTGT
* * * *
34777732 TTAATTCTTATGAGCTTTTGT
1 TCAACTCTTTTGAGCTTCTGT
34777753 TCAACTCTTTTGAGCTTCTGT
1 TCAACTCTTTTGAGCTTCTGT
34777774 T
1 T
34777775 GACGATGTAC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.17, C:0.20, G:0.11, T:0.52
Consensus pattern (21 bp):
TCAACTCTTTTGAGCTTCTGT
Found at i:34784674 original size:3 final size:3
Alignment explanation
Indices: 34784654--34784736 Score: 57
Period size: 3 Copynumber: 28.3 Consensus size: 3
34784644 GCATCTCTAT
* * * *
34784654 TTC TTC TCC TCC TT- TTC TTC TTC TTC TTT TTC -TC TTT TTC TTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
34784699 CTA TTC TTC TTC TTC TTC TTT TTAGC -TC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TT--C TTC TTC TTC TTC T
34784737 ACTACCTATA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
2 7 0.11
3 55 0.87
4 1 0.02
ACGTcount: A:0.02, C:0.31, G:0.01, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:34784676 original size:17 final size:17
Alignment explanation
Indices: 34784654--34784720 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
34784644 GCATCTCTAT
*
34784654 TTCTTCTCCTCCTTTTC
1 TTCTTCTTCTCCTTTTC
*
34784671 TTCTTCTTCT-TTTTCTC
1 TTCTTCTTCTCCTTT-TC
* *
34784688 TTTTTCTTCTCCTATTC
1 TTCTTCTTCTCCTTTTC
*
34784705 TTCTTCTTCTTCTTTT
1 TTCTTCTTCTCCTTTT
34784721 TAGCTCTTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
16 3 0.08
17 35 0.88
18 2 0.05
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCTTCTTCTCCTTTTC
Found at i:34784682 original size:14 final size:14
Alignment explanation
Indices: 34784653--34784718 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
34784643 GGCATCTCTA
* *
34784653 TTTCTTCTCCTCCT
1 TTTCTTCTTCTTCT
34784667 TTTCTTCTTCTTCT
1 TTTCTTCTTCTTCT
*
34784681 TTT-TCTCTTTTTCT
1 TTTCT-TCTTCTTCT
* * *
34784695 TCTCCTATTCTTCT
1 TTTCTTCTTCTTCT
34784709 TCTTCTTCTT
1 T-TTCTTCTT
34784719 TTTAGCTCTT
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
13 1 0.03
14 33 0.85
15 5 0.13
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTCTTCTTCTTCT
Found at i:34784697 original size:37 final size:37
Alignment explanation
Indices: 34784647--34784736 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
34784637 AAGGTTGGCA
* *
34784647 TCTCTATTTCTTCTCCTCCTT-TTCTTCTTCTTCTTTT
1 TCTCTTTTTCTTCTCCT-ATTCTTCTTCTTCTTCTTTT
34784684 TCTCTTTTTCTTCTCCTATTCTTCTTCTTCTTCTTTT
1 TCTCTTTTTCTTCTCCTATTCTTCTTCTTCTTCTTTT
*
34784721 TAGCTCTTCTTCTTCT
1 T--CTCTTTTTCTTCT
34784737 ACTACCTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
36 2 0.04
37 33 0.70
39 12 0.26
ACGTcount: A:0.03, C:0.31, G:0.01, T:0.64
Consensus pattern (37 bp):
TCTCTTTTTCTTCTCCTATTCTTCTTCTTCTTCTTTT
Found at i:34784733 original size:28 final size:28
Alignment explanation
Indices: 34784669--34784736 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
34784659 CTCCTCCTTT
* **
34784669 TCTTCTTCTTCTTTTTCTCTTTTTCTTC
1 TCTTCTTCTTCTTCTTCTCTTTTTCAGC
* *
34784697 TCCTATTCTTCTTCTTCTTCTTTTT-AGC
1 TCTTCTTCTTCTTCTTC-TCTTTTTCAGC
34784725 TCTTCTTCTTCT
1 TCTTCTTCTTCT
34784737 ACTACCTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.03, C:0.29, G:0.01, T:0.66
Consensus pattern (28 bp):
TCTTCTTCTTCTTCTTCTCTTTTTCAGC
Found at i:34786073 original size:27 final size:27
Alignment explanation
Indices: 34786006--34786066 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
34785996 TCATCAAATA
*
34786006 AGTTTTTTGTAGTGGATTGTAGATGAG
1 AGTTTTTTGTAGTGGACTGTAGATGAG
34786033 AGTTTTTTGTAGTGGACTGTAGATGAG
1 AGTTTTTTGTAGTGGACTGTAGATGAG
34786060 AGTTTTT
1 AGTTTTT
34786067 CATAGTGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.21, C:0.02, G:0.31, T:0.46
Consensus pattern (27 bp):
AGTTTTTTGTAGTGGACTGTAGATGAG
Found at i:34789349 original size:60 final size:59
Alignment explanation
Indices: 34789222--34789360 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 59
34789212 ATCAGTGTTA
* *
34789222 ACTGGGCCTTAGCCCATATCAATATTAATCTGAGCCATAGCCCCTTACAGTATCAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGAGCCATAGCCCATTACAG-ATCAGAGTAT
* * * *
34789283 ACTGGGCCTAGCCCATGTCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGAGCCATAGCCC-ATTACAGA-TCAGAG-TAT
* *
34789343 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
34789361 TAACATAGTT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.06
60 49 0.74
61 13 0.20
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGAGCCATAGCCCATTACAGATCAGAGTAT
Found at i:34792603 original size:12 final size:12
Alignment explanation
Indices: 34792583--34792632 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
34792573 AACCTTTTTT
*
34792583 TTTTCATTTCTA
1 TTTTAATTTCTA
*
34792595 TTTTAATTTCCA
1 TTTTAATTTCTA
*
34792607 -TTTCATTTC-A
1 TTTTAATTTCTA
*
34792617 TTTTAATTTATA
1 TTTTAATTTCTA
34792629 TTTT
1 TTTT
34792633 CCATTTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 1 0.03
11 15 0.48
12 15 0.48
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTTAATTTCTA
Found at i:34792615 original size:28 final size:29
Alignment explanation
Indices: 34792584--34792690 Score: 82
Period size: 28 Copynumber: 3.7 Consensus size: 29
34792574 ACCTTTTTTT
34792584 TTTCATTTCT-ATTT-TAATTTCCATTTCA
1 TTTCATTT-TAATTTATAATTTCCATTTCA
* *
34792612 TTTCATTTTAATTTATATTTTCCATTTTAA
1 TTTCATTTTAATTTATAATTTCCA-TTTCA
* *
34792642 TTT-A-TTT-ATTTATCATTT-CAGTTTTTA
1 TTTCATTTTAATTTATAATTTCCA--TTTCA
*
34792669 TTTTCATTTAAATTTATAATTT
1 -TTTCATTTTAATTTATAATTT
34792691 ATTTTCATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
26 2 0.03
27 15 0.23
28 18 0.28
29 10 0.16
30 9 0.14
31 10 0.16
ACGTcount: A:0.25, C:0.10, G:0.01, T:0.64
Consensus pattern (29 bp):
TTTCATTTTAATTTATAATTTCCATTTCA
Found at i:34792639 original size:19 final size:18
Alignment explanation
Indices: 34792612--34792701 Score: 83
Period size: 18 Copynumber: 4.8 Consensus size: 18
34792602 TTCCATTTCA
34792612 TTTCATTTTAATTTATAT
1 TTTCATTTTAATTTATAT
34792630 TTTCCATTTTAATTTATTTAT
1 TTT-CATTTTAATTTA--TAT
* * *
34792651 TTATCATTTCAGTTTTTAT
1 TT-TCATTTTAATTTATAT
* *
34792670 TTTCATTTAAATTTATAA
1 TTTCATTTTAATTTATAT
*
34792688 TTT-ATTTTCATTTA
1 TTTCATTTTAATTTA
34792702 AACTTTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
17 9 0.15
18 18 0.31
19 17 0.29
21 14 0.24
22 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTCATTTTAATTTATAT
Found at i:34792735 original size:5 final size:5
Alignment explanation
Indices: 34792725--34792802 Score: 66
Period size: 5 Copynumber: 14.0 Consensus size: 5
34792715 TTTCATAATA
* *
34792725 TCATT TCATT TCATT TCATAT TCATT ACAAATT ACATT TCATT TCATAT
1 TCATT TCATT TCATT TCAT-T TCATT TC--ATT TCATT TCATT TCAT-T
34792774 TCATATT TCATT TAACATT TCATT TCATT
1 TC--ATT TCATT T--CATT TCATT TCATT
34792803 AATTTTTTTT
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
5 40 0.63
6 8 0.13
7 13 0.21
8 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (5 bp):
TCATT
Found at i:34792785 original size:23 final size:24
Alignment explanation
Indices: 34792713--34792807 Score: 79
Period size: 28 Copynumber: 3.8 Consensus size: 24
34792703 ACTTTTATTC
* *
34792713 CATTTCATAAT-ATCATTTCATTT
1 CATTTCATATTCATAATTTCATTT
*
34792736 CATTTCATATTCATTACAAATTACATTT
1 CATTTCATATTCA-T---AATTTCATTT
34792764 CATTTCATATTCAT-ATTTCATTT
1 CATTTCATATTCATAATTTCATTT
34792787 AACATTTCAT-TTCATTAATTT
1 --CATTTCATATTCA-TAATTT
34792808 TTTTTTCATT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
23 18 0.31
24 5 0.08
25 10 0.17
26 4 0.07
27 1 0.02
28 21 0.36
ACGTcount: A:0.32, C:0.17, G:0.00, T:0.52
Consensus pattern (24 bp):
CATTTCATATTCATAATTTCATTT
Found at i:34792816 original size:20 final size:21
Alignment explanation
Indices: 34792791--34792832 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
34792781 TCATTTAACA
*
34792791 TTTCATTT-CATTAATTTTTT
1 TTTCATTTAAATTAATTTTTT
*
34792811 TTTCATTTAAATTTATTTTTT
1 TTTCATTTAAATTAATTTTTT
34792832 T
1 T
34792833 CCTAACATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTCATTTAAATTAATTTTTT
Found at i:34792985 original size:21 final size:21
Alignment explanation
Indices: 34792943--34792985 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
34792933 TATCAGGGTC
*
34792943 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
*
34792964 ATTT-AAATTTTTCGTCAATTT
1 ATTTAAAATTTTTCAT-AATTT
34792985 A
1 A
34792986 AATATCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:34793097 original size:58 final size:55
Alignment explanation
Indices: 34793035--34793143 Score: 139
Period size: 54 Copynumber: 1.9 Consensus size: 55
34793025 TAAAAAAAAT
*
34793035 TCTCATTTAATTTTTTTTTTCGTGCTGGTGCCGGCCAATGCCAACCCA-TTCTCAGGCC
1 TCTCATTTAA-CTTTTTTTT--TG-TGGTGCCGGCCAATGCCAACCCATTTCTCAGGCC
* **
34793093 TCTCATTTCACTTTTTTTTTGTGGTGTTGGCCAATGCCAACCCATTTCTCA
1 TCTCATTTAACTTTTTTTTTGTGGTGCCGGCCAATGCCAACCCATTTCTCA
34793144 TGCTGACGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
54 21 0.46
55 8 0.17
57 8 0.17
58 9 0.20
ACGTcount: A:0.16, C:0.28, G:0.16, T:0.41
Consensus pattern (55 bp):
TCTCATTTAACTTTTTTTTTGTGGTGCCGGCCAATGCCAACCCATTTCTCAGGCC
Found at i:34793204 original size:11 final size:11
Alignment explanation
Indices: 34793184--34793268 Score: 73
Period size: 11 Copynumber: 7.7 Consensus size: 11
34793174 TCACTTTTTT
34793184 TTTC-ATTTCA
1 TTTCAATTTCA
*
34793194 TTTAAATTTCA
1 TTTCAATTTCA
* * *
34793205 ATTCTATTTAA
1 TTTCAATTTCA
*
34793216 TTTGAATTTCTA
1 TTTCAATTTC-A
*
34793228 TTTCTATTTCA
1 TTTCAATTTCA
*
34793239 TTTCATTTTCA
1 TTTCAATTTCA
*
34793250 TTTCTATTTCA
1 TTTCAATTTCA
*
34793261 TTTAAATT
1 TTTCAATT
34793269 ATATTTTTCT
Statistics
Matches: 56, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
10 3 0.05
11 44 0.79
12 9 0.16
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.60
Consensus pattern (11 bp):
TTTCAATTTCA
Found at i:34793215 original size:17 final size:16
Alignment explanation
Indices: 34793184--34793230 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
34793174 TCACTTTTTT
*
34793184 TTTCATTTC-ATTTAAA
1 TTTCAATTCTATTT-AA
34793200 TTTCAATTCTATTTAA
1 TTTCAATTCTATTTAA
*
34793216 TTTGAATTTCTATTT
1 TTTCAA-TTCTATTT
34793231 CTATTTCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTCAATTCTATTTAA
Done.