Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 112 of 325
Found at i:35551522 original size:59 final size:59
Alignment explanation
Indices: 35551430--35551549 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 59
35551420 GTGGAGGAGA
*
35551430 CTCCTGTATTTTTAGAGCTAATCTAGAGTAACATTCAAAACATGCTTGTTGCTTTAAGC
1 CTCCTGTATTTTTAGAGCTAATCTAGAGTAACATTCAAAACACGCTTGTTGCTTTAAGC
35551489 CTCCTGTATTTTTAGAGCTAATCTAGAGTAACATTCAAAACACGCTTGTTGCTTTAAGC
1 CTCCTGTATTTTTAGAGCTAATCTAGAGTAACATTCAAAACACGCTTGTTGCTTTAAGC
35551548 CT
1 CT
35551550 AGAAGCAACA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (59 bp):
CTCCTGTATTTTTAGAGCTAATCTAGAGTAACATTCAAAACACGCTTGTTGCTTTAAGC
Found at i:35554324 original size:64 final size:64
Alignment explanation
Indices: 35554251--35554378 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
35554241 CCATTCATAA
* * *
35554251 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAAGAACATTTGATTCATGTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
35554315 CACATCTAGTTAAGAACATTTGATTCATGTCGATCATAGTATCTTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAAGAACATTTGATTCATGTCGATCATAGCATCCTAATTATTTGACATAAGCAT
35554379 AGGCCTATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAAGAACATTTGATTCATGTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:35554641 original size:132 final size:133
Alignment explanation
Indices: 35554401--35555363 Score: 1373
Period size: 132 Copynumber: 7.3 Consensus size: 133
35554391 CTGATTCTAC
*
35554401 AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * * *
35554466 TGCAGTGAAACAGATTTTAGCCACCATCCTATCTCCCT-AAGTCGTAGTGGAGTAGGCTGAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAAT
35554530 TGT
131 TGT
* * *
35554533 AGATCTTGTCTCCCTGAAGTTACAGTGGAGCA-AGTCGAAGATGGCGAATCCT-GCCTTCCTGAA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGACGGCGAAT-CTAGTCTTCCTGAA
* * *
35554596 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCT-GAGTCGTAGTGGAGTAGGCTAAAG
64 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAA
35554660 ATTGT
129 ATTGT
* * * * *
35554665 AGACCTTGTCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * *
35554730 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTGAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAAT
35554795 TGT
131 TGT
* *
35554798 AGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * * * *
35554863 TGCAGAGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGCGGAGTAGGCTAAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAAT
35554928 TGT
131 TGT
* * *
35554931 AGATCTTGTCTCCCTGAAGTTG-AGTGGAGCAGATCAAAGACAGCGAATCTTGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * *
35554995 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTGAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAAT
35555060 TGT
131 TGT
* * * * * *
35555063 AGACCTTCTCTCCCTAAAGTTGCAGTGGAG-TGATCGAAGACGGTGAATCTAGTCTTCCTAAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * * *
35555127 TGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTAGAGTAGGCTAAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAAT
35555192 TGT
131 TGT
* * * *
35555195 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACAGCGAATCTTGTCTTCTTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* **
35555260 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCT-AAGTTGTAGTGGAATAGTTTAAAAAA
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCT-AAAAA
*
35555324 TTAT
130 TTGT
* * *
35555328 AGATCCTGTCTCTCTGAAGTTGCAGTAGAGCAGATC
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATC
35555364 AAAACACACA
Statistics
Matches: 739, Mismatches: 84, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
131 3 0.00
132 458 0.62
133 278 0.38
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (133 bp):
AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAAT
TGT
Found at i:35554706 original size:45 final size:45
Alignment explanation
Indices: 35554657--35554878 Score: 128
Period size: 45 Copynumber: 5.0 Consensus size: 45
35554647 GAGTAGGCTA
* * *
35554657 AAGATTGTAGACCTTGTCTCCCTGAAGTTGCAGTAGAGTAGATTG
1 AAGATTGTAGACCTAGTCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * * *
35554702 AAGA-TGGCGAATCTAGTCTTCCTGAAGTTGCAGTGAAGCAGATTT
1 AAGATTGTAG-ACCTAGTCTCCCTGAAGTTGCAGTGGAGCAGATTG
***** * * * * *
35554747 AAGCCACCA-TCCTAG-CTCCCTAAAGTTGTAGTGGAGTAGACTG
1 AAGATTGTAGACCTAGTCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * *
35554790 AAAATTGTAGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCG
1 AAGATTGTAGACCTAGTCTCCCTGAAGTTGCAGTGGAGCAGATTG
* ** * * * *
35554835 AAGA-CGGCGAATCTAGTCTTCCTGAAGTTGCAGAGAAGCAGATT
1 AAGATTGTAG-ACCTAGTCTCCCTGAAGTTGCAGTGGAGCAGATT
35554879 TAAACCACCA
Statistics
Matches: 124, Mismatches: 48, Indels: 10
0.68 0.26 0.05
Matches are distributed among these distances:
43 24 0.19
44 13 0.10
45 87 0.70
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (45 bp):
AAGATTGTAGACCTAGTCTCCCTGAAGTTGCAGTGGAGCAGATTG
Found at i:35554877 original size:265 final size:265
Alignment explanation
Indices: 35554401--35555363 Score: 1425
Period size: 265 Copynumber: 3.6 Consensus size: 265
35554391 CTGATTCTAC
* *
35554401 AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACAGCGAATCTAGTCTTCCTGAAGT
* * * * *
35554466 TGCAGTGAAACAGATTTTAGCCACCATCCTATCTCCCTAAGTCGTAGTGGAGTAGGCTGAAAATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGTTGTAGTGGAGTAGACTGAAAATT
* * *
35554531 GTAGATCTTGTCTCCCTGAAGTTACAGTGGAGCA-AGTCGAAGATGGCGAATCCT-GCCTTCCTG
131 GTAGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGA-TCGAAGACGGCGAAT-CTAGTCTTCCTG
* * * * *
35554594 AAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCT-GAGTCGTAGTGGAGTAGGCTAA
194 AAGTTGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTGGAGTAGGCTAA
*
35554658 AGATTGT
259 AAATTGT
* * ** **
35554665 AGACCTTGTCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACAGCGAATCTAGTCTTCCTGAAGT
35554730 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTGAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCT-AAGTTGTAGTGGAGTAGACTGAAAAT
35554795 TGTAGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
130 TGTAGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
* *
35554860 AGTTGCAGAGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGCGGAGTAGGCTAAA
195 AGTTGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTGGAGTAGGCTAAA
35554925 AATTGT
260 AATTGT
* *
35554931 AGATCTTGTCTCCCTGAAGTTG-AGTGGAGCAGATCAAAGACAGCGAATCTTGTCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACAGCGAATCTAGTCTTCCTGAAGT
35554995 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTGAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCT-AAGTTGTAGTGGAGTAGACTGAAAAT
* * * * * *
35555060 TGTAGACCTTCTCTCCCTAAAGTTGCAGTGGAG-TGATCGAAGACGGTGAATCTAGTCTTCCTAA
130 TGTAGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
*
35555124 AGTTGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTAGAGTAGGCTAAA
195 AGTTGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTGGAGTAGGCTAAA
35555189 AATTGT
260 AATTGT
* * *
35555195 AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACAGCGAATCTTGTCTTCTTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACAGCGAATCTAGTCTTCCTGAAGT
* * ** *
35555260 TGCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAGTGGAATAGTTTAAAAAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGTTGTAGTGGAGTAGACT-GAAAAT
* * * *
35555325 TATAGATCC-TGTCTCTCTGAAGTTGCAGTAGAGCAGATC
130 TGTAGA-CCTTGTCTCCCTGAAGTTACAGTGGAGCAGATC
35555364 AAAACACACA
Statistics
Matches: 642, Mismatches: 49, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
264 233 0.36
265 357 0.56
266 52 0.08
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (265 bp):
AGATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACAGCGAATCTAGTCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGTTGTAGTGGAGTAGACTGAAAATT
GTAGACCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAA
GTTGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTGGAGTAGGCTAAAA
ATTGT
Found at i:35555138 original size:397 final size:396
Alignment explanation
Indices: 35554405--35555366 Score: 1417
Period size: 397 Copynumber: 2.4 Consensus size: 396
35554395 TTCTACAGAT
*
35554405 CTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGTTGCA
1 CTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGTTGCA
* * * *
35554470 GTGAAACAGATTTTAGCCACCATCCTATCTCCCTAAGTCGTAGTGGAGTAGGCTGAAAATTGTAG
66 GTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAGTGGAGTAGGCTAAAAATTGTAG
* * **
35554535 ATCTTGTCTCCCTGAAGTTACAGTGGAGCA-AGTCGAAGATGGCGAATCCTGCCTTCCTGAAGTT
131 ATCTTGTCTCCCTGAAGTT-GAGTGGAGCAGA-TCAAAGACAGCGAATCCTGCCTTCCTGAAGTT
* * *
35554599 GCAGTGAAGCAGATTTAAGCCACCATCCTATCTCCCTGAGTCGTAGTGGAGTAGGCTAAAGATTG
194 GCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGTCGTAGTGGAGTAGACTAAAGATTG
* * * * *
35554664 TAGACCTTGTCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATGGCGAATCTAGTCTTCCTGAAG
259 TAGACCTTCTCTCCCTAAAGTTGCAGTAGAGTAGATCGAAGACGGCGAATCTAGTCTTCCTAAAG
* * * *
35554729 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTGAAAA
324 TTGCAGTGAAGCAGATTTAAACCACCATCCTAGCTCCCTAAAATTGTAGTAGAGTAGACTAAAAA
35554794 TTGTAGAC
389 TTGTAGAC
*
35554802 CTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGTTGCA
1 CTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGTTGCA
* * * * *
35554867 GAGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGCGGAGTAGGCTAAAAATTGTA
66 GTGAAGCAGATTTAAGCCACCATCCTATCTCCCT-AAGTTGTAGTGGAGTAGGCTAAAAATTGTA
* *
35554932 GATCTTGTCTCCCTGAAGTTGAGTGGAGCAGATCAAAGACAGCGAATCTTGTCTTCCTGAAGTTG
130 GATCTTGTCTCCCTGAAGTTGAGTGGAGCAGATCAAAGACAGCGAATCCTGCCTTCCTGAAGTTG
*
35554997 CAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGACTGAAA-ATT
195 CAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCT-AAGTCGTAGTGGAGTAGACT-AAAGATT
* *
35555061 GTAGACCTTCTCTCCCTAAAGTTGCAGTGGAGT-GATCGAAGACGGTGAATCTAGTCTTCCTAAA
258 GTAGACCTTCTCTCCCTAAAGTTGCAGTAGAGTAGATCGAAGACGGCGAATCTAGTCTTCCTAAA
* * *
35555125 GTTGCAGTGAAGCAGATTTAAACCACCATCCTATCTCTCTAAAATTGTAGTAGAGTAGGCTAAAA
323 GTTGCAGTGAAGCAGATTTAAACCACCATCCTAGCTCCCTAAAATTGTAGTAGAGTAGACTAAAA
*
35555190 ATTGTAGAT
388 ATTGTAGAC
* * * *
35555199 CTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACAGCGAATCTTGTCTTCTTGAAGTTGCA
1 CTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGTTGCA
* ** *
35555264 GTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAGTGGAATAGTTTAAAAAATTATA
66 GTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAGTGGAGTAGGCT-AAAAATTGTA
* * *
35555329 GATCCTGTCTCTCTGAAGTTGCAGTAGAGCAGATCAAA
130 GATCTTGTCTCCCTGAAGTTG-AGTGGAGCAGATCAAA
35555367 ACACACATTA
Statistics
Matches: 506, Mismatches: 53, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
396 15 0.03
397 376 0.74
398 112 0.22
399 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (396 bp):
CTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGTTGCA
GTGAAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTTGTAGTGGAGTAGGCTAAAAATTGTAG
ATCTTGTCTCCCTGAAGTTGAGTGGAGCAGATCAAAGACAGCGAATCCTGCCTTCCTGAAGTTGC
AGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGTCGTAGTGGAGTAGACTAAAGATTGTA
GACCTTCTCTCCCTAAAGTTGCAGTAGAGTAGATCGAAGACGGCGAATCTAGTCTTCCTAAAGTT
GCAGTGAAGCAGATTTAAACCACCATCCTAGCTCCCTAAAATTGTAGTAGAGTAGACTAAAAATT
GTAGAC
Found at i:35556850 original size:23 final size:23
Alignment explanation
Indices: 35556807--35556850 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
35556797 TAATACATTG
* *
35556807 TTTTATTTATTATCTATTTTAGA
1 TTTTATATATTATCTAATTTAGA
*
35556830 TTTTATATATTATTTAATTTA
1 TTTTATATATTATCTAATTTA
35556851 AATTATATCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTTATATATTATCTAATTTAGA
Found at i:35557319 original size:20 final size:21
Alignment explanation
Indices: 35557271--35557313 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
35557261 ATTATTTGTT
*
35557271 TTATTATTATTATTATTATAC
1 TTATTTTTATTATTATTATAC
*
35557292 TTATTTTTATT-TTATTGTAC
1 TTATTTTTATTATTATTATAC
35557312 TT
1 TT
35557314 TCTTTTTACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATTTTTATTATTATTATAC
Found at i:35557342 original size:13 final size:13
Alignment explanation
Indices: 35557324--35557366 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
35557314 TCTTTTTACC
*
35557324 ATTTACTATTATT
1 ATTTACTATTTTT
35557337 ATTTACATATTTTT
1 ATTTAC-TATTTTT
35557351 ATTGTA-TATTTTT
1 ATT-TACTATTTTT
35557364 ATT
1 ATT
35557367 ATTATTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 16 0.59
14 9 0.33
15 2 0.07
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (13 bp):
ATTTACTATTTTT
Found at i:35564250 original size:25 final size:25
Alignment explanation
Indices: 35564216--35564265 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
35564206 CACAAACTCA
*
35564216 TAATTCAGGTAGATGTCTATTTAGT
1 TAATTCAGGTAGATGCCTATTTAGT
35564241 TAATTCAGGTAGATGCCTATTTAGT
1 TAATTCAGGTAGATGCCTATTTAGT
35564266 ATTGAACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (25 bp):
TAATTCAGGTAGATGCCTATTTAGT
Found at i:35573419 original size:90 final size:90
Alignment explanation
Indices: 35573252--35573609 Score: 303
Period size: 90 Copynumber: 4.1 Consensus size: 90
35573242 GCAATGTGTT
* * *** * ** *
35573252 CATTGTTTAAAAGTATGATTGTGATTAGTGATATTGTTTAAAAATGTGATTT-AGACTCAAATTT
1 CATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAGTACAATTTGGGA-TTGAATTC
** *
35573316 GATTGTGACAATGGTAGTAAATTGTG
65 GATCATGATAATGGTAGTAAATTGTG
* *
35573342 CAGTGTTTAAAAGTGTGATTGTGATTAGTTATATTGTTTAAAAGTACAATTTGGGATTGAATTCG
1 CATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAGTACAATTTGGGATTGAATTCG
*
35573407 ATCATGATAATGGTAGTGAATTGTG
66 ATCATGATAATGGTAGTAAATTGTG
* * * * * *
35573432 CATTATTTAAAGGTATAGA-TGCGAATAG-T-GATTG-------GTACGATTTGGGATTGAATTC
1 CATTGTTTAAAAGTAT-GATTGTGATTAGTTATATTGTTTAAAAGTACAATTTGGGATTGAATTC
* *
35573487 GATCATGATAATGGTAGCAAATTATG
65 GATCATGATAATGGTAGTAAATTGTG
* * * *
35573513 CATTGTTTGAAGGCATGGTTGTGATTAGTTATATTGTTTAAAAGTA-AGATTTGGGATTGAATAT
1 CATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAGTACA-ATTTGGGATTGAAT-T
* **
35573577 -GATCATTGATAA-GGTGGCGAATTGTG
64 CGATCA-TGATAATGGTAGTAAATTGTG
35573603 CATTGTT
1 CATTGTT
35573610 GATTCGTTAT
Statistics
Matches: 216, Mismatches: 37, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
80 1 0.00
81 63 0.29
82 1 0.00
83 4 0.02
88 4 0.02
89 1 0.00
90 131 0.61
91 11 0.05
ACGTcount: A:0.31, C:0.05, G:0.24, T:0.39
Consensus pattern (90 bp):
CATTGTTTAAAAGTATGATTGTGATTAGTTATATTGTTTAAAAGTACAATTTGGGATTGAATTCG
ATCATGATAATGGTAGTAAATTGTG
Found at i:35573667 original size:92 final size:92
Alignment explanation
Indices: 35573561--35573748 Score: 367
Period size: 92 Copynumber: 2.0 Consensus size: 92
35573551 TAAAAGTAAG
35573561 ATTTGGGATTGAATATGATCATTGATAAGGTGGCGAATTGTGCATTGTTGATTCGTTATGAAGCA
1 ATTTGGGATTGAATATGATCATTGATAAGGTGGCGAATTGTGCATTGTTGATTCGTTATGAAGCA
*
35573626 GGAGAAAATGGCTGAGTTTTAGCATTT
66 GGAGAAAATGGCTGAGTTTTAGCATTC
35573653 ATTTGGGATTGAATATGATCATTGATAAGGTGGCGAATTGTGCATTGTTGATTCGTTATGAAGCA
1 ATTTGGGATTGAATATGATCATTGATAAGGTGGCGAATTGTGCATTGTTGATTCGTTATGAAGCA
35573718 GGAGAAAATGGCTGAGTTTTAGCATTC
66 GGAGAAAATGGCTGAGTTTTAGCATTC
35573745 ATTT
1 ATTT
35573749 TGATATTTTT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 95 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (92 bp):
ATTTGGGATTGAATATGATCATTGATAAGGTGGCGAATTGTGCATTGTTGATTCGTTATGAAGCA
GGAGAAAATGGCTGAGTTTTAGCATTC
Found at i:35578350 original size:30 final size:31
Alignment explanation
Indices: 35578314--35578399 Score: 147
Period size: 30 Copynumber: 2.8 Consensus size: 31
35578304 TTATTGTTAC
* *
35578314 TTTTTTATTATTTTAAAGGTATTTGTTAAA-
1 TTTTTTATTATTTTAGAGGCATTTGTTAAAT
35578344 TTTTTTATTATTTTAGAGGCATTTGTTAAAT
1 TTTTTTATTATTTTAGAGGCATTTGTTAAAT
35578375 TTTTTTATTATTTTAGAGGCATTTG
1 TTTTTTATTATTTTAGAGGCATTTG
35578400 CTTATTAAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
30 28 0.53
31 25 0.47
ACGTcount: A:0.26, C:0.02, G:0.13, T:0.59
Consensus pattern (31 bp):
TTTTTTATTATTTTAGAGGCATTTGTTAAAT
Found at i:35583771 original size:26 final size:26
Alignment explanation
Indices: 35583742--35583849 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
35583732 TGGTACAAAT
*
35583742 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
35583768 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
35583794 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
35583820 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
35583846 TGAT
1 TGAT
35583850 GGGTATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:35595616 original size:6 final size:6
Alignment explanation
Indices: 35595605--35595638 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
35595595 GTAAGCTCTT
*
35595605 TACACA TACACA TACACA TACACA TACACG TACA
1 TACACA TACACA TACACA TACACA TACACA TACA
35595639 TATATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.47, C:0.32, G:0.03, T:0.18
Consensus pattern (6 bp):
TACACA
Found at i:35597801 original size:26 final size:27
Alignment explanation
Indices: 35597771--35597823 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 27
35597761 GTAAACATAT
35597771 AATTT-TA-TAATATATGAGAATGACTC
1 AATTTATATTAAT-TATGAGAATGACTC
35597797 AATTTCAATATTAATTATGAGAATGAC
1 AATTT--ATATTAATTATGAGAATGAC
35597824 CTGAAATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
26 5 0.22
29 14 0.61
30 4 0.17
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (27 bp):
AATTTATATTAATTATGAGAATGACTC
Found at i:35598058 original size:36 final size:37
Alignment explanation
Indices: 35598018--35598091 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 37
35598008 GTAGAAAGAA
35598018 AGAAAAATTTTAA-TTGGTGACAGCTCCAAATATGAT
1 AGAAAAATTTTAATTTGGTGACAGCTCCAAATATGAT
35598054 AGAAAAATTTTAATTTTGGTGACAGCTCCAAATATGAT
1 AGAAAAATTTTAA-TTTGGTGACAGCTCCAAATATGAT
35598092 GGCACTAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 13 0.36
38 23 0.64
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (37 bp):
AGAAAAATTTTAATTTGGTGACAGCTCCAAATATGAT
Found at i:35598368 original size:97 final size:100
Alignment explanation
Indices: 35598197--35598378 Score: 255
Period size: 97 Copynumber: 1.9 Consensus size: 100
35598187 TTCTTGGACT
* * *
35598197 CAGCTCCAAATGTGGCGGCACCAATATATATATATTACTTTTTCGATGCTACCTCTTCATGTGGA
1 CAGCTCCAAATGTGGCGACACCAATATATATATATTACTTTTTCGATGCTACCTCTTCATATAGA
*
35598262 GTCACCAAAATCTGTAAAAAAAAATTTATTGGTTC
66 GGCACCAAAATCTGTAAAAAAAAATTTATTGGTTC
* * * *
35598297 CAGCTCCAAATGTGGCGACACCAAT-T-TTTTTTTTAC-TTTTCGGTG-TCACCTCTTCATATAG
1 CAGCTCCAAATGTGGCGACACCAATATATATATATTACTTTTTCGATGCT-ACCTCTTCATATAG
35598358 AGGCACCAAAATCTGTAAAAA
65 AGGCACCAAAATCTGTAAAAA
35598379 CAATTTAGTT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
96 1 0.01
97 40 0.55
98 7 0.10
99 1 0.01
100 24 0.33
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (100 bp):
CAGCTCCAAATGTGGCGACACCAATATATATATATTACTTTTTCGATGCTACCTCTTCATATAGA
GGCACCAAAATCTGTAAAAAAAAATTTATTGGTTC
Found at i:35600614 original size:62 final size:61
Alignment explanation
Indices: 35600538--35600736 Score: 186
Period size: 62 Copynumber: 3.2 Consensus size: 61
35600528 GTGTTTTACT
* *
35600538 TTCTGTTTAGCTCTTATGAACTTCTGTTTAACTCATACGAGTTTTTGTTCAGTTCTACGAGC
1 TTCTGTTCAGCTCTTATGAACTTCTGTTCAACTC-TACGAGTTTTTGTTCAGTTCTACGAGC
* ** * * * * * * * *
35600600 TTCTGTTCAACTCTTATGAGTTTCTATTCAGCTCTACAAGCTTTTGTTCAACTCCTATGAGT
1 TTCTGTTCAGCTCTTATGAACTTCTGTTCAACTCTACGAGTTTTTGTTC-AGTTCTACGAGC
* * *
35600662 TTCTACTT-AGCTCTTAT-AAGCTTCTGTTCAACTCTTAAGAGTTTCTGTTCAGTTCTTACGAGC
1 TTCT-GTTCAGCTCTTATGAA-CTTCTGTTCAACTC-TACGAGTTTTTGTTCAGTTC-TACGAGC
35600725 TTCTGTTCAGCT
1 TTCTGTTCAGCT
35600737 TTCGAGCTCC
Statistics
Matches: 103, Mismatches: 28, Indels: 11
0.73 0.20 0.08
Matches are distributed among these distances:
61 14 0.14
62 63 0.61
63 26 0.25
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.44
Consensus pattern (61 bp):
TTCTGTTCAGCTCTTATGAACTTCTGTTCAACTCTACGAGTTTTTGTTCAGTTCTACGAGC
Found at i:35600621 original size:41 final size:42
Alignment explanation
Indices: 35600537--35600733 Score: 204
Period size: 41 Copynumber: 4.7 Consensus size: 42
35600527 CGTGTTTTAC
* * * * *
35600537 TTTCTGTTTAGCTCTTATGAA-CTTCTGTTTAACTCATACGAG
1 TTTCTGTTCAGCTCTTA-CAAGCTTCTGTTCAACTCTTATGAG
* * *
35600579 TTTTTGTTCAGTTC-TACGAGCTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAGCTCTTACAAGCTTCTGTTCAACTCTTATGAG
* * *
35600620 TTTCTATTCAGCTC-TACAAGCTTTTGTTCAACTCCTATGAG
1 TTTCTGTTCAGCTCTTACAAGCTTCTGTTCAACTCTTATGAG
* * *
35600661 TTTCTACTT-AGCTCTTATAAGCTTCTGTTCAACTCTTAAGAG
1 TTTCT-GTTCAGCTCTTACAAGCTTCTGTTCAACTCTTATGAG
* *
35600703 TTTCTGTTCAGTTCTTACGAGCTTCTGTTCA
1 TTTCTGTTCAGCTCTTACAAGCTTCTGTTCA
35600734 GCTTTCGAGC
Statistics
Matches: 128, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 1 0.01
41 67 0.52
42 60 0.47
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACAAGCTTCTGTTCAACTCTTATGAG
Found at i:35600734 original size:21 final size:21
Alignment explanation
Indices: 35600538--35600750 Score: 139
Period size: 21 Copynumber: 10.3 Consensus size: 21
35600528 GTGTTTTACT
* * *
35600538 TTCTGTTTAGCTCTTATGAAC
1 TTCTGTTCAGCTCTTACGAGC
* * * *
35600559 TTCTGTTTAACTCATACGAGT
1 TTCTGTTCAGCTCTTACGAGC
* *
35600580 TTTTGTTCAGTTC-TACGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * *
35600600 TTCTGTTCAACTCTTATGAGT
1 TTCTGTTCAGCTCTTACGAGC
* *
35600621 TTCTATTCAGCTC-TACAAGC
1 TTCTGTTCAGCTCTTACGAGC
* * * * *
35600641 TTTTGTTCAACTCCTATGAGT
1 TTCTGTTCAGCTCTTACGAGC
* **
35600662 TTCTACTT-AGCTCTTATAAGC
1 TTCT-GTTCAGCTCTTACGAGC
* * *
35600683 TTCTGTTCAACTCTTAAGAGT
1 TTCTGTTCAGCTCTTACGAGC
*
35600704 TTCTGTTCAGTTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
35600725 TTCTGTTCAGCT-TT-CGAGC
1 TTCTGTTCAGCTCTTACGAGC
*
35600744 TCCTGTT
1 TTCTGTT
35600751 AATGATGTAC
Statistics
Matches: 145, Mismatches: 43, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
19 11 0.08
20 34 0.23
21 98 0.68
22 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTACGAGC
Found at i:35602298 original size:19 final size:18
Alignment explanation
Indices: 35602263--35602311 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
35602253 ACAATAGTAA
*
35602263 AGTATAATAA-TAGTGAT
1 AGTATAATAACAAGTGAT
35602280 GAGTATAATAACAAGTGAT
1 -AGTATAATAACAAGTGAT
*
35602299 AATAATAATAACA
1 AGT-ATAATAACA
35602312 GTAACAATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.53, C:0.04, G:0.14, T:0.29
Consensus pattern (18 bp):
AGTATAATAACAAGTGAT
Found at i:35607755 original size:24 final size:21
Alignment explanation
Indices: 35607739--35607783 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
35607729 ATTGAAAGTG
35607739 ATTGTCGAATGGCTATTG--A
1 ATTGTCGAATGGCTATTGAAA
35607758 ATTGTCGAATGGCTATTGAAA
1 ATTGTCGAATGGCTATTGAAA
35607779 TATTG
1 -ATTG
35607784 AAGGAGACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 18 0.78
21 1 0.04
22 4 0.17
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (21 bp):
ATTGTCGAATGGCTATTGAAA
Found at i:35607763 original size:19 final size:19
Alignment explanation
Indices: 35607739--35607777 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
35607729 ATTGAAAGTG
35607739 ATTGTCGAATGGCTATTGA
1 ATTGTCGAATGGCTATTGA
35607758 ATTGTCGAATGGCTATTGA
1 ATTGTCGAATGGCTATTGA
35607777 A
1 A
35607778 ATATTGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (19 bp):
ATTGTCGAATGGCTATTGA
Found at i:35609548 original size:90 final size:90
Alignment explanation
Indices: 35609395--35609559 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
35609385 GGTGGGAATT
** * *
35609395 AGTTATATTGTTTAAAAGTGTGATTTAAATTCGATTTTGATATTGATAATGGTAATAAATTGTGT
1 AGTTATATTGTTTAAAAGTGTGATTTAAATTCGATTCAGATATTCATAATGGTAACAAATTGTGT
35609460 AGTGTTTAAAAATACAATTGTGATA
66 AGTGTTTAAAAATACAATTGTGATA
* * * *
35609485 AGTTATATTGTTTAAAAGTGTGATTTGAGATT-GAATTCAG-TCTTCATAATGGTAGCGAATTGT
1 AGTTATATTGTTTAAAAGTGTGATTT-AAATTCG-ATTCAGATATTCATAATGGTAACAAATTGT
*
35609548 GTATTGTTTAAA
64 GTAGTGTTTAAA
35609560 GGTATGGATG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 56 0.88
91 8 0.12
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.43
Consensus pattern (90 bp):
AGTTATATTGTTTAAAAGTGTGATTTAAATTCGATTCAGATATTCATAATGGTAACAAATTGTGT
AGTGTTTAAAAATACAATTGTGATA
Found at i:35616318 original size:3 final size:3
Alignment explanation
Indices: 35616310--35616335 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
35616300 ACTAAAATAA
35616310 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
35616336 AAGAGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:35617478 original size:34 final size:34
Alignment explanation
Indices: 35617404--35617499 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
35617394 ACATGCACTT
* *
35617404 ATACAAATATCATATCAGAATGTCACATTACCAA
1 ATACATATATCATATCAGAATGTCATATTACCAA
* * * * *
35617438 AAACATATATCATATCAGAATATCATATTTCTAG
1 ATACATATATCATATCAGAATGTCATATTACCAA
* * *
35617472 ATACATAAATCAGATCAGGATGTCATAT
1 ATACATATATCATATCAGAATGTCATAT
35617500 CAAATTAAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (34 bp):
ATACATATATCATATCAGAATGTCATATTACCAA
Found at i:35618179 original size:17 final size:19
Alignment explanation
Indices: 35618144--35618184 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
35618134 TACCCAATTT
35618144 ACCTGTGTAATCGCACACG
1 ACCTGTGTAATCGCACACG
*
35618163 -CCTGTGTACTC-CACACG
1 ACCTGTGTAATCGCACACG
35618180 ACCTG
1 ACCTG
35618185 GCACACGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.22
Consensus pattern (19 bp):
ACCTGTGTAATCGCACACG
Found at i:35620963 original size:94 final size:93
Alignment explanation
Indices: 35620788--35620998 Score: 246
Period size: 94 Copynumber: 2.2 Consensus size: 93
35620778 TAGACCAACC
* * *
35620788 ACAAATCTTATACCCCTGAAGTCTTAGTGGGACAGATTGAATCTACCATAGCGAATCTTATTTCC
1 ACAAATCTTATACCCCTGAAGT-TTAGTGGGACAGATTGAATCTACCATAGCAAATCATATCTCC
* *
35620853 ATGAACTTGCAATGGAGCAGATTGAAATT
65 ATGAACTTGCAATGGAGCAGACTGAAACT
* * * *
35620882 ACAAATCCTATACCCCTGAAGTTATAGTGGGTCGGATTGAAGT-TATCATAGCAAATCATATCTC
1 ACAAATCTTATACCCCTGAAGTT-TAGTGGGACAGATTGAA-TCTACCATAGCAAATCATATCTC
* * * * *
35620946 CCTGAAGTTGTAGTGGAGCAGACTGAAGCT
64 CATGAACTTGCAATGGAGCAGACTGAAACT
35620976 ACAAATCTTAT-CTCCCTGAAGTT
1 ACAAATCTTATAC-CCCTGAAGTT
35620999 GCGATAAAGC
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
93 2 0.02
94 96 0.97
95 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (93 bp):
ACAAATCTTATACCCCTGAAGTTTAGTGGGACAGATTGAATCTACCATAGCAAATCATATCTCCA
TGAACTTGCAATGGAGCAGACTGAAACT
Found at i:35620996 original size:44 final size:44
Alignment explanation
Indices: 35620841--35621288 Score: 264
Period size: 44 Copynumber: 10.0 Consensus size: 44
35620831 TACCATAGCG
* * * * * **
35620841 AATCTTATTTCCATGAACTTGCAATGGAGCAGATTGAAATTACA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* * *
35620885 AATCCTATAC-CCCTGAAGTTATAGTGG-GTCGGATTGAAGTTATCATAGCA
1 AATCTTAT-CTCCCTGAAGTTGTAGTGGAG-CAGATTGAAG----C-TA-CA
* *
35620935 AATCATATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* **
35620979 AATCTTATCTCCCTGAAGTTG-CGATAAAGCAGATTGAA---ACA
1 AATCTTATCTCCCTGAAGTTGTAG-TGGAGCAGATTGAAGCTACA
* * * * *
35621020 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAACGACA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* * * * *
35621064 AATCTTATAC-CTCTGAAGTTGTAGTAGG-TCGGATTAAATCTACCA
1 AATCTTAT-CTCCCTGAAGTTGTAGT-GGAGCAGATTGAAGCTA-CA
* * * * * * * *
35621109 TAGCGAGTCTCATTTCCTTAAATTTGTAGTGGAGTAAATTAAAGCTACA
1 -A---A-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* * * * * *
35621158 AATATTATCTCCCTAAAATTGTAGTAGCGCAGATTGAAGCTAAA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* * **
35621202 AATCTTATCCCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTATG
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* * * *
35621246 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAACTAC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTAC
35621289 CTTTGAAGTT
Statistics
Matches: 308, Mismatches: 71, Indels: 50
0.72 0.17 0.12
Matches are distributed among these distances:
41 34 0.11
42 1 0.00
43 2 0.01
44 193 0.63
45 8 0.03
46 2 0.01
48 1 0.00
49 8 0.03
50 58 0.19
51 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
Found at i:35621056 original size:41 final size:41
Alignment explanation
Indices: 35620933--35621059 Score: 148
Period size: 41 Copynumber: 3.0 Consensus size: 41
35620923 GTTATCATAG
* * *
35620933 CAAATCATATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA---A
**
35620977 CAAATCTTATCTCCCTGAAGTTGC-GATAAAGCAGATTGAAA
1 CAAATCTTATCTCCCTGAAGTTGCAG-TGGAGCAGATTGAAA
* *
35621018 CAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
35621059 C
1 C
35621060 GACAAATCTT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
41 37 0.51
42 1 0.01
43 1 0.01
44 33 0.46
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (41 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
Found at i:35621192 original size:179 final size:180
Alignment explanation
Indices: 35620841--35621232 Score: 416
Period size: 179 Copynumber: 2.2 Consensus size: 180
35620831 TACCATAGCG
* * * **
35620841 AATCTTAT-TTCCATGAACTTGCAATGGAGCAGATTGAAATTACAAATCCTATACCCCTGAAGTT
1 AATCTTATCTTCC-TGAAGTTGCAGTGGAGCAAATTGAAACGACAAATCCTATACCCCTGAAGTT
* * * * *
35620905 ATAGTGGGTCGGATTGAAGTTATCATAGCAAATCATATCTCCCTGAAGTTGTAGTGGAGCAGACT
65 ATAGTAGGTCGGATTGAAATTACCATAGCAAATCATATCTCCCTAAAGTTGTAGTGGAGCAAACT
* * * * * *
35620970 GAAGCTACAAATCTTATCTCCCTGAAGTTGCGATAAAGCAGATTGAA-ACA
130 AAAGCTACAAATATTATCTCCCTAAAATTGAGATAAAGCAGATTGAACAAA
* * *
35621020 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAACGACAAATCTTATACCTCTGAAGTTG
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAACGACAAATCCTATACCCCTGAAGTTA
* * * * * * *
35621085 TAGTAGGTCGGATT-AAATCTACCATAGCGAGTC-TCATTTCCTTAAATTTGTAGTGGAGTAAAT
66 TAGTAGGTCGGATTGAAAT-TACCATAGCAAATCAT-ATCTCCCTAAAGTTGTAGTGGAGCAAAC
**
35621148 TAAAGCTACAAATATTATCTCCCTAAAATTGTAG-TAGCGCAGATTGAAGCTAAA
129 TAAAGCTACAAATATTATCTCCCTAAAATTG-AGATAAAGCAGATTGAA-C-AAA
** *
35621202 AATCTTATCCCCCTGAAGTTGTAGTGGAGCA
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCA
35621233 GATTAAAGCT
Statistics
Matches: 175, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
178 4 0.02
179 136 0.78
180 5 0.03
182 30 0.17
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (180 bp):
AATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAACGACAAATCCTATACCCCTGAAGTTA
TAGTAGGTCGGATTGAAATTACCATAGCAAATCATATCTCCCTAAAGTTGTAGTGGAGCAAACTA
AAGCTACAAATATTATCTCCCTAAAATTGAGATAAAGCAGATTGAACAAA
Found at i:35624847 original size:25 final size:25
Alignment explanation
Indices: 35624818--35624868 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
35624808 ATATATTATA
35624818 TATTTTAAATTGTTTTATTAC-TATT
1 TATTTTAAATT-TTTTATTACATATT
* *
35624843 TATTTTAAGTTTTTTTTTACATATT
1 TATTTTAAATTTTTTATTACATATT
35624868 T
1 T
35624869 TGTATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (25 bp):
TATTTTAAATTTTTTATTACATATT
Found at i:35624908 original size:24 final size:24
Alignment explanation
Indices: 35624881--35624934 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
35624871 TATTTTAAAC
* * *
35624881 TATTATCCGTTTTAAATTTTTATA
1 TATTATCCATTTTAAAATCTTATA
**
35624905 TATTATTTATTTTAAAATCTTATA
1 TATTATCCATTTTAAAATCTTATA
35624929 TATTAT
1 TATTAT
35624935 TTATTTTGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (24 bp):
TATTATCCATTTTAAAATCTTATA
Found at i:35624935 original size:24 final size:25
Alignment explanation
Indices: 35624890--35625279 Score: 208
Period size: 26 Copynumber: 15.1 Consensus size: 25
35624880 CTATTATCCG
35624890 TTTTAAATTT-TTATATATTATTTA
1 TTTTAAATTTCTTATATATTATTTA
*
35624914 TTTTAAA-ATCTTATATATTATTTA
1 TTTTAAATTTCTTATATATTATTTA
* *
35624938 TTTTGAATTATTTTTTTATATATATCTTTTA
1 TTTT-AA--A-TTTCTTATATAT-T-ATTTA
* *
35624969 TTTTTAAACCGTT-TTGTATATTATTTA
1 -TTTTAAA--TTTCTTATATATTATTTA
*
35624996 TTTTAAATTTCTTTTTACATATTATTTA
1 TTTTAAATTTC---TTATATATTATTTA
** *
35625024 CCTTAAA-GTCTT-T-TA-TATGTTA
1 TTTTAAATTTCTTATATATTAT-TTA
* *
35625046 TTTTAAAGTGTCTTTTATATTATTTA
1 TTTTAAA-TTTCTTATATATTATTTA
* *
35625072 TTTTAAATTGCTTTGTATATTATTTA
1 TTTTAAATTTC-TTATATATTATTTA
*
35625098 TTTTAAATATTATTTATATATTATTTA
1 TTTTAAAT-TT-CTTATATATTATTTA
* * * *
35625125 TTTAAAATTATTTTATATATCATCTA
1 TTTTAAATT-TCTTATATATTATTTA
* ** * *
35625151 TCTTAAATTTTCACATATAATATTCA
1 TTTTAAA-TTTCTTATATATTATTTA
* * * *
35625177 ATGTAAACTGTT-TTATATGTTATTCA
1 TTTTAAA-T-TTCTTATATATTATTTA
35625203 TTTTAAATTT-TT-TATATTATTTA
1 TTTTAAATTTCTTATATATTATTTA
* *
35625226 TTTTAAGTTGCTT-TATTATTATTTA
1 TTTTAAATTTCTTATA-TATTATTTA
* * *
35625251 TTTTAAGTTTTTTTATACATTATTTA
1 TTTTAA-ATTTCTTATATATTATTTA
35625277 TTT
1 TTT
35625280 GAAACTGTTT
Statistics
Matches: 283, Mismatches: 53, Indels: 58
0.72 0.13 0.15
Matches are distributed among these distances:
21 3 0.01
22 10 0.04
23 18 0.06
24 42 0.15
25 21 0.07
26 103 0.36
27 38 0.13
28 18 0.06
29 17 0.06
30 3 0.01
31 6 0.02
32 4 0.01
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTTAAATTTCTTATATATTATTTA
Found at i:35624969 original size:55 final size:54
Alignment explanation
Indices: 35624897--35625127 Score: 164
Period size: 53 Copynumber: 4.4 Consensus size: 54
35624887 CCGTTTTAAA
* *
35624897 TTTTTATATATTATTTA-TTTTAAA-ATCTTATATATTATTTATTTTGAATTATT
1 TTTTTATATATTATTTATTTTTAAACATCTTATATATTATTTATTTTAAATT-TC
* * * *
35624950 TTTTTATATATATCTTTTATTTTTAAACCGTTTTGTATATTATTTATTTTAAATTTC
1 TTTTTATATAT-T-ATTTATTTTTAAA-CATCTTATATATTATTTATTTTAAATTTC
* ** * *
35625007 TTTTTACATATTATTTA-CCTTAAA-GTCTT-T-TA-TATGTTATTTTAAAGTGTC
1 TTTTTATATATTATTTATTTTTAAACATCTTATATATTAT-TTATTTTAAA-TTTC
* * *
35625058 --TTT-TATATTATTTA-TTTTAAA-TTGCTTTGTATATTATTTATTTTAAATAT-
1 TTTTTATATATTATTTATTTTTAAACAT-C-TTATATATTATTTATTTTAAATTTC
*
35625108 TATTTATATATTATTTATTT
1 TTTTTATATATTATTTATTT
35625128 AAAATTATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 31
0.75 0.09 0.16
Matches are distributed among these distances:
48 16 0.11
49 7 0.05
50 14 0.10
51 7 0.05
52 19 0.13
53 25 0.17
54 8 0.06
55 8 0.06
56 8 0.06
57 11 0.08
58 22 0.15
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (54 bp):
TTTTTATATATTATTTATTTTTAAACATCTTATATATTATTTATTTTAAATTTC
Found at i:35625126 original size:53 final size:52
Alignment explanation
Indices: 35624890--35625279 Score: 284
Period size: 52 Copynumber: 7.6 Consensus size: 52
35624880 CTATTATCCG
*
35624890 TTTTAAA--TTTTTATATATTATTTATTTTAAAAT-C-TTATATATTATTTA
1 TTTTAAATTTTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
* ** * *
35624938 TTTTGAATTATTTTTTTATATATATCTTTTATTTTTAAACCGTTTTGTATATTATTTA
1 TTTT-AA--ATTTTTTTATATAT-T-ATTTA-TTTTAAATTGCTTTATATATTATTTA
* ** * *
35624996 TTTTAAATTTCTTTTTACATATTATTTACCTTAAAGT-CTTT-TATA-T-GTTA
1 TTTTAAA-TT-TTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
* * *
35625046 TTTTAAAGTGTCTTT-TATATTATTTATTTTAAATTGCTTTGTATATTATTTA
1 TTTTAAA-TTTTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
* * ** * *
35625098 TTTTAAATATTATTTATATATTATTTATTTAAAATTATTTTATATATCATCTA
1 TTTTAAAT-TTTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
* *** * * * * * * * *
35625151 TCTTAAATTTTCACATATAATATTCAATGTAAACTGTTTTATATGTTATTCA
1 TTTTAAATTTTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
*
35625203 TTTTAAA--TTTTT-TATATTATTTATTTTAAGTTGCTTTAT-TATTATTTA
1 TTTTAAATTTTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
* *
35625251 TTTTAAGTTTTTTTATACATTATTTATTT
1 TTTTAAATTTTTTTATATATTATTTATTT
35625280 GAAACTGTTT
Statistics
Matches: 261, Mismatches: 60, Indels: 39
0.73 0.17 0.11
Matches are distributed among these distances:
48 33 0.13
49 30 0.11
50 22 0.08
51 17 0.07
52 53 0.20
53 52 0.20
54 6 0.02
55 9 0.03
56 10 0.04
57 12 0.05
58 17 0.07
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (52 bp):
TTTTAAATTTTTTTATATATTATTTATTTTAAATTGCTTTATATATTATTTA
Found at i:35625140 original size:15 final size:15
Alignment explanation
Indices: 35625090--35625137 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 15
35625080 TGCTTTGTAT
35625090 ATTATTTATTT-TAA
1 ATTATTTATTTATAA
*
35625104 A-TA-TTATTTATAT
1 ATTATTTATTTATAA
35625117 ATTATTTATTTA-AA
1 ATTATTTATTTATAA
35625131 ATTATTT
1 ATTATTT
35625138 TATATATCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 6 0.21
13 5 0.17
14 11 0.38
15 7 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTATTTATTTATAA
Found at i:35634265 original size:36 final size:36
Alignment explanation
Indices: 35634218--35634290 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
35634208 CAATCTCGGA
*
35634218 TGAAGTGATCTAGCGAACCTGATAAACATATTAATT
1 TGAAGTAATCTAGCGAACCTGATAAACATATTAATT
35634254 TGAAGTAATCTAGCGAACCTGATAAACATATTAATT
1 TGAAGTAATCTAGCGAACCTGATAAACATATTAATT
35634290 T
1 T
35634291 ACATGATTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (36 bp):
TGAAGTAATCTAGCGAACCTGATAAACATATTAATT
Found at i:35636296 original size:39 final size:40
Alignment explanation
Indices: 35636196--35636380 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
35636186 TTGAATGATG
* * *
35636196 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
35636235 ATCCGGACAAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
35636276 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
35636315 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
35636354 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
35636381 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:35636332 original size:79 final size:81
Alignment explanation
Indices: 35636196--35636380 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
35636186 TTGAATGATG
*
35636196 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACAAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACAAAGATCCGAAGGCATT
35636260 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * ***
35636275 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACAAAGAT-CCGAAGGCA
*
35636337 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
35636355 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35636381 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACAAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:35636402 original size:79 final size:79
Alignment explanation
Indices: 35636249--35636413 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
35636239 GGACAAAGAT
* **
35636249 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
35636314 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
35636328 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
35636391 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35636407 CCGAAGG
1 CCGAAGG
35636414 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35637817 original size:5 final size:5
Alignment explanation
Indices: 35637801--35637859 Score: 73
Period size: 5 Copynumber: 11.0 Consensus size: 5
35637791 TAAGAAGATA
*
35637801 TTATT TTGTT TTATT TTATT TTATTAT TTATTT TTATTT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTA-T-T TTA-TT TTA-TT TTATT TTATT
35637850 TTATT TTATT
1 TTATT TTATT
35637860 AATTTAGGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
5 33 0.66
6 11 0.22
7 6 0.12
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:35637828 original size:23 final size:24
Alignment explanation
Indices: 35637799--35637856 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 24
35637789 AATAAGAAGA
35637799 TATTATTT-TGTTTTA-TTTTATTT
1 TATTATTTAT-TTTTATTTTTATTT
35637822 TATTATTTATTTTTATTTTTATTT
1 TATTATTTATTTTTATTTTTATTT
35637846 TA-T-TTTATTTT
1 TATTATTTATTTT
35637857 ATTAATTTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.24
23 14 0.42
24 11 0.33
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (24 bp):
TATTATTTATTTTTATTTTTATTT
Found at i:35642938 original size:5 final size:5
Alignment explanation
Indices: 35642922--35642981 Score: 52
Period size: 5 Copynumber: 12.0 Consensus size: 5
35642912 TAGGAAGATA
* * * *
35642922 TTATT TTGTT TTATT TTATT TTATT ATT-TA TTA-T TTATTT TTAAT TTAAT
1 TTATT TTATT TTATT TTATT TTATT -TTATT TTATT TTA-TT TTATT TTATT
35642972 TTATT TTATT
1 TTATT TTATT
35642982 AATTTAGGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
4 5 0.11
5 34 0.76
6 6 0.13
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (5 bp):
TTATT
Found at i:35642954 original size:30 final size:30
Alignment explanation
Indices: 35642920--35642976 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35642910 AATAGGAAGA
* *
35642920 TATTATTT-TGTTTTATTTTATTTTATTATT
1 TATTATTTAT-TTTTAATTTAATTTATTATT
35642950 TATTATTTATTTTTAATTTAATTTATT
1 TATTATTTATTTTTAATTTAATTTATT
35642977 TTATTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (30 bp):
TATTATTTATTTTTAATTTAATTTATTATT
Found at i:35648477 original size:3 final size:3
Alignment explanation
Indices: 35648469--35648493 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
35648459 TCATCTTTAC
35648469 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
35648494 GCAATGTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:35650398 original size:19 final size:19
Alignment explanation
Indices: 35650359--35650398 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
35650349 GCTGTCCAAT
*
35650359 TTTAAAATAATAATCACAA
1 TTTAAAATAAAAATCACAA
35650378 TTTAAAATAAAATATCA-AA
1 TTTAAAATAAAA-ATCACAA
35650397 TT
1 TT
35650399 CAAATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTAAAATAAAAATCACAA
Found at i:35656393 original size:23 final size:23
Alignment explanation
Indices: 35656367--35656415 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
35656357 CCCTGTTCAC
35656367 TGCTTTTGATTGAGTTAATGTTA
1 TGCTTTTGATTGAGTTAATGTTA
35656390 TGCTTTTGATTGAGTTAATGTTA
1 TGCTTTTGATTGAGTTAATGTTA
35656413 TGC
1 TGC
35656416 ATTAATCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.06, G:0.22, T:0.51
Consensus pattern (23 bp):
TGCTTTTGATTGAGTTAATGTTA
Found at i:35656501 original size:20 final size:18
Alignment explanation
Indices: 35656476--35656513 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 18
35656466 AAGTAAATTG
35656476 TATTATTTTAATAATATTTT
1 TATTA-TTTAAT-ATATTTT
35656496 TATTATTTAATATATTTT
1 TATTATTTAATATATTTT
35656514 ATACGAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 6 0.33
20 5 0.28
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTATTTAATATATTTT
Found at i:35659562 original size:32 final size:32
Alignment explanation
Indices: 35659521--35659588 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
35659511 CCGTGTTGCT
35659521 TTAGGCAGTTTCTTACTCTAAAAACGCCTAAG
1 TTAGGCAGTTTCTTACTCTAAAAACGCCTAAG
35659553 TTAGGCAGTTTCTTACTCTAAAAACGCCTAAG
1 TTAGGCAGTTTCTTACTCTAAAAACGCCTAAG
35659585 TTAG
1 TTAG
35659589 CCTAACTCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (32 bp):
TTAGGCAGTTTCTTACTCTAAAAACGCCTAAG
Found at i:35659909 original size:22 final size:23
Alignment explanation
Indices: 35659877--35659919 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
35659867 GAGTATCTAC
*
35659877 AAATCAAATC-TCTAATATTATA
1 AAATCAAATCTTCTAAGATTATA
*
35659899 AAATCATATCTTCTAAGATTA
1 AAATCAAATCTTCTAAGATTA
35659920 CATATCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTATA
Found at i:35659925 original size:17 final size:17
Alignment explanation
Indices: 35659903--35659955 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 17
35659893 ATTATAAAAT
35659903 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
35659920 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
35659939 CATATCTTCGAAGATTA
1 CATATCTTCTAAGATTA
35659956 TGTTTCCATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 14 0.45
18 2 0.06
19 15 0.48
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:35664983 original size:22 final size:23
Alignment explanation
Indices: 35664956--35665000 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
35664946 GGGTATCTAC
35664956 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
35664978 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
35665001 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:35665004 original size:17 final size:17
Alignment explanation
Indices: 35664982--35665034 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 17
35664972 ATTACAAAAT
35664982 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
35664999 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
35665018 CATATCTTCAAAGATTA
1 CATATCTTCTAAGATTA
35665035 TATTTCCATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 14 0.45
18 2 0.06
19 15 0.48
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:35665005 original size:22 final size:22
Alignment explanation
Indices: 35664953--35665010 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
35664943 AAAGGGTATC
*
35664953 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
35664974 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
35664997 TACATATCATATCT
1 TACAAATCATATCT
35665011 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:35665013 original size:19 final size:20
Alignment explanation
Indices: 35664966--35665023 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
35664956 AAATCAAATC
*
35664966 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
35664989 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
35665008 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
35665024 TTCAAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:35668522 original size:53 final size:53
Alignment explanation
Indices: 35668366--35668531 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
35668356 GACGAAAAAT
* **
35668366 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
35668418 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
35668471 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
35668525 TATGTGA
1 -ATGTGA
35668532 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:35677111 original size:10 final size:9
Alignment explanation
Indices: 35677062--35677109 Score: 51
Period size: 10 Copynumber: 4.9 Consensus size: 9
35677052 TAATTTTAGG
35677062 ATTTATTTT
1 ATTTATTTT
35677071 CATTTATCTTT
1 -ATTTAT-TTT
*
35677082 AATTATCTTT
1 ATTTAT-TTT
35677092 ATTTATTTGT
1 ATTTATTT-T
35677102 ATTTATTT
1 ATTTATTT
35677110 GTTAGAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.85
11 3 0.09
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (9 bp):
ATTTATTTT
Found at i:35678048 original size:10 final size:10
Alignment explanation
Indices: 35678026--35678061 Score: 58
Period size: 9 Copynumber: 3.8 Consensus size: 10
35678016 CCCTTATACT
35678026 ATTATTTTT-
1 ATTATTTTTA
35678035 ATTATTTTTA
1 ATTATTTTTA
35678045 ATTATTTTTA
1 ATTATTTTTA
35678055 A-TATTTT
1 ATTATTTT
35678062 ATAGGGATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 15 0.58
10 11 0.42
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
ATTATTTTTA
Found at i:35681015 original size:3 final size:3
Alignment explanation
Indices: 35681007--35681261 Score: 198
Period size: 3 Copynumber: 85.7 Consensus size: 3
35680997 TTAATTAATT
* * *
35681007 TTA TTA TTA TT- TT- TTA CTA TTA TTA TTTA TCA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
35681051 TTA CTA TTA TTA TTA TT- TTA ATA TCA TT- TATA TTCT TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT-A TTA TTA TTA
* * * * * *
35681096 TTA TTA TTA CTA TTA CTA TTA TTT TTA TTT TTA TTT TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * **
35681144 CCA TTA TTG TTA TTA TTA CTA TTA TTA TTA TTA TTA CGA TT- TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * *
35681189 TTA TTA TTA TTA TTG TTA TTA TTA TCA TTA -TA ATA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
35681236 CTA TTA TTT TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
35681262 TTTAAAACCA
Statistics
Matches: 196, Mismatches: 47, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
2 10 0.05
3 179 0.91
4 7 0.04
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:35681357 original size:11 final size:11
Alignment explanation
Indices: 35681343--35681403 Score: 52
Period size: 12 Copynumber: 5.3 Consensus size: 11
35681333 TCACTAAAAT
*
35681343 TTTCTTTGTTA
1 TTTCTTTATTA
35681354 TTTCATTTATTA
1 TTTC-TTTATTA
*
35681366 TTCCTTTATTA
1 TTTCTTTATTA
*
35681377 TTTTATTTATTTA
1 -TTTCTTTA-TTA
35681390 TTTCATTT-TTA
1 TTTC-TTTATTA
35681401 TTT
1 TTT
35681404 TGTTTTTGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
11 17 0.41
12 18 0.44
13 6 0.15
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.72
Consensus pattern (11 bp):
TTTCTTTATTA
Found at i:35681425 original size:3 final size:3
Alignment explanation
Indices: 35681417--35681459 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
35681407 TTTTGTTCTC
35681417 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
35681460 TGTTTATTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:35684541 original size:41 final size:41
Alignment explanation
Indices: 35684491--35684572 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
35684481 AGAGAGAGAG
35684491 CGTTCAAAACCAAAAAGGAGAGTTGAGAGGTGCGCAGCTCT
1 CGTTCAAAACCAAAAAGGAGAGTTGAGAGGTGCGCAGCTCT
* *
35684532 CGTTTAAAACCAAAAAGGAGAGTTGAGAGGTGCGTAGCTCT
1 CGTTCAAAACCAAAAAGGAGAGTTGAGAGGTGCGCAGCTCT
35684573 TAAATTGATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (41 bp):
CGTTCAAAACCAAAAAGGAGAGTTGAGAGGTGCGCAGCTCT
Found at i:35692641 original size:23 final size:24
Alignment explanation
Indices: 35692613--35692657 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
35692603 ATGACAAATT
35692613 TTTAAA-TTTTAAAAATAAAAAAA
1 TTTAAATTTTTAAAAATAAAAAAA
35692636 TTTAAATTTTTAAAAATAAAAA
1 TTTAAATTTTTAAAAATAAAAA
35692658 TAAAAATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TTTAAATTTTTAAAAATAAAAAAA
Found at i:35704842 original size:18 final size:18
Alignment explanation
Indices: 35704819--35704853 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
35704809 ATTAAAACTC
35704819 TCTTGAATACACCAACCT
1 TCTTGAATACACCAACCT
*
35704837 TCTTGAATACTCCAACC
1 TCTTGAATACACCAACC
35704854 ATCAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.29
Consensus pattern (18 bp):
TCTTGAATACACCAACCT
Found at i:35714682 original size:98 final size:98
Alignment explanation
Indices: 35714511--35714705 Score: 286
Period size: 98 Copynumber: 2.0 Consensus size: 98
35714501 TTTTTGAAGC
* ** *
35714511 ATCAATGACTCGTTCTGTTAAGGTGTGGTGGTAACTATGACACAAAATCAAATTTAAAAAATTAA
1 ATCAACGACTCGTTCTGTTAAGGTGTGGTGGTAACTACAACAAAAAATCAAATTTAAAAAATTAA
35714576 AAATAATAAAAGCAACTAAAAACAATAAAAAAA
66 AAATAATAAAAGCAACTAAAAACAATAAAAAAA
* *
35714609 ATCAACGACTCTTTCTGTTAAGGTGTGGTGGTACCTACAACAAAAAATCAAA-TTAAAAGAATTT
1 ATCAACGACTCGTTCTGTTAAGGTGTGGTGGTAACTACAACAAAAAATCAAATTTAAAA-AA-TT
* *
35714673 TAAAA-AATAAAAGCAACTAAACACAATAAAAAA
64 AAAAATAATAAAAGCAACTAAAAACAATAAAAAA
35714706 TATAATTAAG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
97 6 0.07
98 75 0.86
99 6 0.07
ACGTcount: A:0.51, C:0.13, G:0.12, T:0.24
Consensus pattern (98 bp):
ATCAACGACTCGTTCTGTTAAGGTGTGGTGGTAACTACAACAAAAAATCAAATTTAAAAAATTAA
AAATAATAAAAGCAACTAAAAACAATAAAAAAA
Found at i:35721973 original size:19 final size:20
Alignment explanation
Indices: 35721949--35721986 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
35721939 AAAATGAAAT
35721949 AAAAT-GAATAAATA-AATAC
1 AAAATGGAA-AAATATAATAC
35721968 AAAATGGAAAAATATAATA
1 AAAATGGAAAAATATAATA
35721987 ATAATATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAATGGAAAAATATAATAC
Found at i:35722954 original size:24 final size:24
Alignment explanation
Indices: 35722917--35722965 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
35722907 CTTTTTGCAA
35722917 GCAAGTTGGGTGATGGAGTTAGTG
1 GCAAGTTGGGTGATGGAGTTAGTG
35722941 GCAAG-TGGGTTGATGGAGTTAGTG
1 GCAAGTTGGG-TGATGGAGTTAGTG
35722965 G
1 G
35722966 TTGGTTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.20, C:0.04, G:0.47, T:0.29
Consensus pattern (24 bp):
GCAAGTTGGGTGATGGAGTTAGTG
Found at i:35722976 original size:12 final size:12
Alignment explanation
Indices: 35722959--35722989 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
35722949 GTTGATGGAG
35722959 TTAGTGGTTGGT
1 TTAGTGGTTGGT
35722971 TTAGTGGTTGGT
1 TTAGTGGTTGGT
35722983 TTAGTGG
1 TTAGTGG
35722990 GGTGCTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.42, T:0.48
Consensus pattern (12 bp):
TTAGTGGTTGGT
Found at i:35723521 original size:44 final size:44
Alignment explanation
Indices: 35723473--35724362 Score: 146
Period size: 44 Copynumber: 20.2 Consensus size: 44
35723463 GCCGCTACAT
*
35723473 GGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* ** * * * **
35723517 GGAGATAAGACAT-GCAATTTTC-AGTCTGATCCACTGCAACTTTAG
1 GGAGATAAGA-TTCGCTGTCTTCGA-TCTGCTCCACTACTGC-TTAG
* * **
35723562 GGAGATAAGACTT-G-TATCTT-GAACCTGCTCCACTACAACTTTAG
1 GGAGATAAGA-TTCGCTGTCTTCG-ATCTGCTCCACTACTGC-TTAG
** * * ** * * * *
35723606 GGAGATAAG-GCCGGTGGCTTAAATCTGCTCCATTGCAG-TTACAT
1 GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTT--AG
* *
35723650 AGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* * * * ** *
35723694 AGAGATAAGA-TCTGCAAT-TTTTAG-TCTGCTCCACTGCAACTCAG
1 GGAGATAAGATTC-GC--TGTCTTCGATCTGCTCCACTACTGCTTAG
* ** * * * ** * ** * * *
35723738 GGAGATGAGGCTAG-TGGCCTAAATCTGCTTCTTTACTACCTCG
1 GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* * * *
35723781 AGAAGATAAGATTCACTGTCTTTGATCTGCTCTACTACTGCTTAG
1 -GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* ** * * *
35723826 GGAGATAAGATTTGCAATCATC-AGCCTGCTCCACTACTGCTCAG
1 GGAGATAAGATTCGCTGTCTTCGA-TCTGCTCCACTACTGCTTAG
** * * ** * * * *
35723870 GGAGATAAGGCTAG-TGGCTTAAATTTGCTTCC-CTACTACCTCG
1 GGAGATAAGATTCGCTGTCTTCGATCTGC-TCCACTACTGCTTAG
* **
35723913 AGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAG
1 -GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
** * * *
35723958 GGAGATAAGA-TCGGCAAT-TATC-AGCCTGCT-CACTGCTGCTCAG
1 GGAGATAAGATTC-GCTGTCT-TCGA-TCTGCTCCACTACTGCTTAG
* ** * * ** * * *
35724001 AGAGATAAGGCTAG-TGGCTTAAATCTGCTTCC-CTACTACCTCG
1 GGAGATAAGATTCGCTGTCTTCGATCTGC-TCCACTACTGCTTAG
* * * * *
35724044 GGAAAATGAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAG
1 GG-AGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* ** * ** *
35724089 GGAGATAAGA-TCTACAATCTTC-AGCCTGCT-CACGGCTGCTCAG
1 GGAGATAAGATTC-GCTGTCTTCGA-TCTGCTCCACTACTGCTTAG
* ** * * ** * * * * * * *
35724132 AGAGATAAGGCTAG-TGGCTTAAATCTGTTTCTCTGCTACCTCG
1 GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* * * *
35724175 GGAAGATAAGATTCACCGTCTTCGATTTGCTCCATTACTGCTTAG
1 GG-AGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
* *
35724220 GGAGATAAGA-TCTG-TAATCTTC-AGTCTGCTCCACTGCTGCTTAG
1 GGAGATAAGATTC-GCT-GTCTTCGA-TCTGCTCCACTACTGCTTAG
** * * ** * * *
35724264 GGAGATAAGGCTAG-TGGCTTAAATCTGCTTCC-CTACTACCTCG
1 GGAGATAAGATTCGCTGTCTTCGATCTGC-TCCACTACTGCTTAG
** * * * *
35724307 AAAAGATAAGATTCACCGTCTTCGATATACTCCACTACTGCTTAG
1 -GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
35724352 GGAGATAAGAT
1 GGAGATAAGAT
35724363 CTACAATCTT
Statistics
Matches: 572, Mismatches: 221, Indels: 106
0.64 0.25 0.12
Matches are distributed among these distances:
41 1 0.00
42 16 0.03
43 111 0.19
44 311 0.54
45 131 0.23
46 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
GGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAG
Found at i:35723535 original size:133 final size:133
Alignment explanation
Indices: 35723291--35723593 Score: 419
Period size: 133 Copynumber: 2.3 Consensus size: 133
35723281 CCATTACAAT
** * * *
35723291 TTCAGGGAGATAAGGCTGGTGGCTTAAATATACTCCATTGTCACTACATGGAGATAAGATTCGCC
1 TTCAGGGAGATAAGGCTGGTAACTTAAATCTGCTCCATTGCCACTACATGGAGATAAGATTCGCC
*
35723356 ATCTTCGATCTGATCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAGTATGCTCCACTGC
66 ATCTTCGATCTGATCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAGTATGATCCACTGC
35723421 AAC
131 AAC
* *
35723424 TTCAAGGAGATAAGGCTGGTAACTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGCC
1 TTCAGGGAGATAAGGCTGGTAACTTAAATCTGCTCCATTGCCACTACATGGAGATAAGATTCGCC
* * * * *
35723489 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CATGCAATTTTCAGTCTGATCCACTG
66 ATCTTCGATCTGATCCACTACTACTTAGGGAGATAAGATC-TACAATTTTCAGTATGATCCACTG
35723553 CAAC
130 CAAC
* * * * * *
35723557 TTTAGGGAGATAAGACTTGTATCTTGAACCTGCTCCA
1 TTCAGGGAGATAAGGCTGGTAACTTAAATCTGCTCCA
35723594 CTACAACTTT
Statistics
Matches: 149, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 1 0.01
133 148 0.99
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (133 bp):
TTCAGGGAGATAAGGCTGGTAACTTAAATCTGCTCCATTGCCACTACATGGAGATAAGATTCGCC
ATCTTCGATCTGATCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAGTATGATCCACTGC
AAC
Found at i:35723593 original size:177 final size:176
Alignment explanation
Indices: 35723410--35723743 Score: 526
Period size: 177 Copynumber: 1.9 Consensus size: 176
35723400 ATTTTCAGTA
* * * *
35723410 TGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTAACTTAAATCTGCTCCATTGCCGCTACATGG
1 TGCTCCACTACAACTTCAAGGAGATAAGGCCGGTAACTTAAATCTGCTCCATTGCAGCTACATAG
*
35723475 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CATGCAATTTTC
66 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATC-TGCAATTTTC
*
35723539 AGTCTGATCCACTGCAACTTTAGGGAGATAAGACTTGTATCTTGAACC
130 AGTCTGATCCACTGCAAC-TCAGGGAGATAAGACTTGTATCTTGAACC
* * ** *
35723587 TGCTCCACTACAACTTTAGGGAGATAAGGCCGGTGGCTTAAATCTGCTCCATTGCAGTTACATAG
1 TGCTCCACTACAACTTCAAGGAGATAAGGCCGGTAACTTAAATCTGCTCCATTGCAGCTACATAG
*
35723652 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTTA
66 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCA
*
35723717 GTCTGCTCCACTGCAACTCAGGGAGAT
131 GTCTGATCCACTGCAACTCAGGGAGAT
35723744 GAGGCTAGTG
Statistics
Matches: 143, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
176 9 0.06
177 133 0.93
178 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (176 bp):
TGCTCCACTACAACTTCAAGGAGATAAGGCCGGTAACTTAAATCTGCTCCATTGCAGCTACATAG
AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCA
GTCTGATCCACTGCAACTCAGGGAGATAAGACTTGTATCTTGAACC
Found at i:35723722 original size:89 final size:88
Alignment explanation
Indices: 35723447--35723731 Score: 254
Period size: 89 Copynumber: 3.2 Consensus size: 88
35723437 GGCTGGTAAC
* * * *
35723447 TTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG
1 TTAAGTCTGCTCCACTGCAGTTACATGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG
35723512 CTTAGGGAGATAAGACATGCAATT
66 CTTAGGGAGATAAGAC-TGCAATT
* * * * * ** *
35723536 TTCAGTCTGATCCACTGCAACTT-TAGGGAGATAAGACTT-G-TATCTT-GAACCTGCTCCACTA
1 TTAAGTCTGCTCCACTGC-AGTTACATGGAGATAAGA-TTCGCCGTCTTCG-ATCTGCTCCACTA
** * * *****
35723597 CAACTTTAGGGAGATAAGGCCGGTGGC
63 CTGC-TTAGGGAGATAAGACTGCAATT
* * *
35723624 TTAAATCTGCTCCATTGCAGTTACATAGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG
1 TTAAGTCTGCTCCACTGCAGTTACATGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG
*
35723689 CTTAGAGAGATAAGATCTGCAATT
66 CTTAGGGAGATAAGA-CTGCAATT
*
35723713 TTTAGTCTGCTCCACTGCA
1 TTAAGTCTGCTCCACTGCA
35723732 ACTCAGGGAG
Statistics
Matches: 142, Mismatches: 45, Indels: 18
0.69 0.22 0.09
Matches are distributed among these distances:
87 6 0.04
88 56 0.39
89 76 0.54
90 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (88 bp):
TTAAGTCTGCTCCACTGCAGTTACATGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGACTGCAATT
Found at i:35723743 original size:88 final size:87
Alignment explanation
Indices: 35723473--35723743 Score: 251
Period size: 88 Copynumber: 3.1 Consensus size: 87
35723463 GCCGCTACAT
35723473 GGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACATGCAATTTT
1 GGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAC-TGCAATTTT
* * *
35723538 CAGTCTGATCCACTGCAACTTTAG
65 AAGTCTGCTCCACTGCAAC-TCAG
** * ** * * *****
35723562 GGAGATAAGACTT-G-TATCTT-GAACCTGCTCCACTACAACTTTAGGGAGATAAGGCCGGTGGC
1 GGAGATAAGA-TTCGCCGTCTTCG-ATCTGCTCCACTACTGC-TTAGGGAGATAAGACTGCAATT
* * ** *
35723624 TTAAATCTGCTCCATTGCAGTTACAT
63 TTAAGTCTGCTCCACTGCAACT-CAG
* *
35723650 AGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTT
1 GGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGCAATTTT
*
35723715 TAGTCTGCTCCACTGCAACTCAG
65 AAGTCTGCTCCACTGCAACTCAG
35723738 GGAGAT
1 GGAGAT
35723744 GAGGCTAGTG
Statistics
Matches: 133, Mismatches: 41, Indels: 17
0.70 0.21 0.09
Matches are distributed among these distances:
87 4 0.03
88 64 0.48
89 62 0.47
90 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (87 bp):
GGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACTGCAATTTTA
AGTCTGCTCCACTGCAACTCAG
Found at i:35724066 original size:131 final size:131
Alignment explanation
Indices: 35723652--35724502 Score: 1141
Period size: 131 Copynumber: 6.5 Consensus size: 131
35723642 AGTTACATAG
* * *
35723652 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTTA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TTTCA
* ** * * * ** *
35723717 GTCTGCTCCACTGCAACTCAGGGAGATGAGGCTAGTGGCCTAAATCTGCTTCTTTACTACCTCGA
65 GCCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
35723782 GA
130 GA
* * * * *
35723784 AGATAAGATTCACTGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATTTGCAATCATCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TTCA
* * * *
35723849 GCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTCGA
65 GCCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
35723914 GA
130 GA
* * *
35723916 AGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGGCAATTATCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATT-TCA
35723981 GCCTGCT-CACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
65 GCCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
35724045 GA
130 GA
* * * *
35724047 AAATGAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TTCA
* * * *
35724112 GCCTGCT-CACGGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGTTTCTCTGCTACCTCGG
65 GCCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
35724176 GA
130 GA
* * *
35724178 AGATAAGATTCACCGTCTTCGATTTGCTCCATTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TTCA
* * * *
35724243 GTCTGCTCCACTGCTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGA
65 GCCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
*
35724308 AA
130 GA
* * *
35724310 AGATAAGATTCACCGTCTTCGATATACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TTCA
* * ** *
35724375 GCCTGC-ACACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCTTTACCACCTCGG
65 GCCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
35724439 GA
130 GA
* * * * * *
35724441 AGATGAGATTCGCCTTTTTCGATCTACTCAACTACTGCTTAGGGAGATAAGATCTGCAATTT
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTT
35724503 TCTCCAGTGT
Statistics
Matches: 637, Mismatches: 78, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
130 2 0.00
131 342 0.54
132 293 0.46
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (131 bp):
AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCAG
CCTGCTCCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGG
A
Found at i:35724251 original size:394 final size:395
Alignment explanation
Indices: 35723657--35724500 Score: 1251
Period size: 394 Copynumber: 2.1 Consensus size: 395
35723647 CATAGAGATA
* * * *
35723657 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTTAGTCTG
1 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTG
* * * *
35723722 CTCCACTGCAACTCAGGGAGATGAGGCTAGTGGCCTAAATCTGCTTCTTTACTACCTCGAGAAGA
66 CTCCACGGCAACTCAGAGAGATAAGGCTAGTGGCCTAAATCTGCTTCTCTACTACCTCGAGAAGA
* * * *
35723787 TAAGATTCACTGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATTTGCAATCATCAGCC
131 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAGCC
* *
35723852 TGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTCGAGAA
196 TGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAA
* * * *
35723917 GATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGGCAAT-TATCA
261 GATAAGATTCACCATCTTCGATATACTCCACTACTGCTTAGGGAGATAAGATCGACAATCT-TCA
* * *
35723981 GCCTGCTCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGG
325 GCCTGCACACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACCACCTCGGG
35724046 AAAATG
390 AAAATG
* * *
35724052 AGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTG
1 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTG
** * * * *
35724117 CT-CACGGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGTTTCTCTGCTACCTCGGGAAGA
66 CTCCACGGCAACTCAGAGAGATAAGGCTAGTGGCCTAAATCTGCTTCTCTACTACCTCGAGAAGA
* * * * *
35724181 TAAGATTCACCGTCTTCGATTTGCTCCATTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTC
131 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAGCC
* *
35724246 TGCTCCACTGCTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAA
196 TGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAA
* *
35724311 GATAAGATTCACCGTCTTCGATATACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAG
261 GATAAGATTCACCATCTTCGATATACTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAG
**
35724376 CCTGCACACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCTTTACCACCTCGGGA
326 CCTGCACACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACCACCTCGGGA
*
35724441 AGATG
391 AAATG
* * * *
35724446 AGATTCGCCTTTTTCGATCTACTCAACTACTGCTTAGGGAGATAAGATCTGCAAT
1 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT
35724501 TTTCTCCAGT
Statistics
Matches: 399, Mismatches: 49, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
394 338 0.85
395 61 0.15
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (395 bp):
AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTG
CTCCACGGCAACTCAGAGAGATAAGGCTAGTGGCCTAAATCTGCTTCTCTACTACCTCGAGAAGA
TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAGCC
TGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAA
GATAAGATTCACCATCTTCGATATACTCCACTACTGCTTAGGGAGATAAGATCGACAATCTTCAG
CCTGCACACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACCACCTCGGGA
AAATG
Found at i:35724257 original size:263 final size:262
Alignment explanation
Indices: 35723652--35724502 Score: 1220
Period size: 263 Copynumber: 3.2 Consensus size: 262
35723642 AGTTACATAG
* *
35723652 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTTA
1 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TTTCA
** * * ** *
35723717 GTCTGCTCCACTGCAACTCAGGGAGATGAGGCTAGTGGCCTAAATCTGCTTCTTTACTACCTCGA
65 GTCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
* * * * * * *
35723782 GAAGATAAGATTCACTGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATTTGCAATCAT
130 GAAAATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT
* * * *
35723847 CAGCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTC
195 CAGCCTGCT-CACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCTCTACTACCTC
*
35723912 GAGA
259 GGGA
* *
35723916 AGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGGCAATTATCA
1 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATT-TCA
* *
35723981 GCCTGCT-CACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
65 GTCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
* *
35724045 GAAAATGAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT
130 GAAAATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT
* * *
35724110 CAGCCTGCTCACGGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGTTTCTCTGCTACCTCG
195 CAGCCTGCTCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCTCTACTACCTCG
35724175 GGA
260 GGA
* * * *
35724178 AGATAAGATTCACCGTCTTCGATTTGCTCCATTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TTCA
*
35724243 GTCTGCTCCACTGCTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC-G
65 GTCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
* * *
35724307 AAAAGATAAGATTCACCGTCTTCGATATACTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
130 GAAA-ATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
* * * *
35724372 TCAGCCTGCACACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCTTTACCACCTC
194 TCAGCCTGCTCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCTCTACTACCTC
35724437 GGGA
259 GGGA
* * * * *
35724441 AGATGAGATTCGCCTTTTTCGATCTACTCAACTACTGCTTAGGGAGATAAGATCTGCAATTT
1 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTT
35724503 TCTCCAGTGT
Statistics
Matches: 523, Mismatches: 60, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
262 120 0.23
263 339 0.65
264 64 0.12
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (262 bp):
AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCAG
TCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGG
AAAATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
AGCCTGCTCACTGCTGCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCTCTACTACCTCGG
GA
Found at i:35725107 original size:25 final size:25
Alignment explanation
Indices: 35725070--35725129 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
35725060 TTAAGTTGGG
35725070 TAAGTT-CTAAACAATAGTCCTGTTT
1 TAAGTTCCT-AACAATAGTCCTGTTT
*
35725095 TAAGTTCCTAACAATAGTCTTGTTT
1 TAAGTTCCTAACAATAGTCCTGTTT
*
35725120 CAAGTTCCTA
1 TAAGTTCCTA
35725130 CACTGTTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 30 0.94
26 2 0.06
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (25 bp):
TAAGTTCCTAACAATAGTCCTGTTT
Found at i:35725617 original size:20 final size:21
Alignment explanation
Indices: 35725594--35725639 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
35725584 TGGCCTCTCA
35725594 TTTTTCT-TTTT-TCTTTTCTT
1 TTTTTCTGTTTTCTCTTTT-TT
*
35725614 TTTTTGTGTTTTCTCTTTTTT
1 TTTTTCTGTTTTCTCTTTTTT
35725635 TTTTT
1 TTTTT
35725640 GAAACTACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 11 0.48
22 6 0.26
ACGTcount: A:0.00, C:0.11, G:0.04, T:0.85
Consensus pattern (21 bp):
TTTTTCTGTTTTCTCTTTTTT
Found at i:35725630 original size:22 final size:21
Alignment explanation
Indices: 35725600--35725640 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
35725590 CTCATTTTTC
*
35725600 TTTTTTCTTTTCTTTTTTTGTG
1 TTTTCTCTTTT-TTTTTTTGTG
35725622 TTTTCTCTTTTTTTTTTTG
1 TTTTCTCTTTTTTTTTTTG
35725641 AAACTACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (21 bp):
TTTTCTCTTTTTTTTTTTGTG
Found at i:35726148 original size:7 final size:7
Alignment explanation
Indices: 35726136--35726173 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
35726126 CAAGATTTTT
35726136 TTTTTAC
1 TTTTTAC
35726143 TTTTTAC
1 TTTTTAC
35726150 TTTTTAC
1 TTTTTAC
35726157 -TTTTA-
1 TTTTTAC
*
35726162 TTTTTTC
1 TTTTTAC
35726169 TTTTT
1 TTTTT
35726174 GGCTGCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 9 0.32
7 19 0.68
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTAC
Found at i:35726155 original size:14 final size:13
Alignment explanation
Indices: 35726131--35726173 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
35726121 CCTTCCAAGA
35726131 TTTTT-TTTTTAC
1 TTTTTATTTTTAC
35726143 TTTTTACTTTTTAC
1 TTTTTA-TTTTTAC
*
35726157 -TTTTATTTTTTC
1 TTTTTATTTTTAC
35726169 TTTTT
1 TTTTT
35726174 GGCTGCCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 11 0.41
13 9 0.33
14 7 0.26
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTATTTTTAC
Found at i:35730166 original size:50 final size:50
Alignment explanation
Indices: 35730091--35730260 Score: 201
Period size: 50 Copynumber: 3.5 Consensus size: 50
35730081 CCATGGCAAC
* *
35730091 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGG
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
35730141 AAGTGATAAGTAATAGCTTGGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
35730191 AAGTG---A-T-A-A-CTTCGGCTACATTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* ** *
35730234 CAAGTGAAAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
35730261 CTGATCAGTG
Statistics
Matches: 103, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
43 31 0.30
44 6 0.06
45 1 0.01
46 1 0.01
47 2 0.02
48 1 0.01
50 52 0.50
51 9 0.09
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:35730274 original size:31 final size:31
Alignment explanation
Indices: 35730236--35730353 Score: 175
Period size: 31 Copynumber: 3.8 Consensus size: 31
35730226 ACAAATGACA
*
35730236 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
35730267 AGTGAAAAGTGGTAGC-TCTGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
35730298 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
35730329 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
35730354 AAGTGACAAG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 2 0.03
31 74 0.96
32 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:35730441 original size:47 final size:46
Alignment explanation
Indices: 35730371--35730584 Score: 193
Period size: 47 Copynumber: 4.7 Consensus size: 46
35730361 AAGTGATTTT
* * * *
35730371 CGTATAAAACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
* * * * *
35730417 CTGTATAAGACTATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
* * *
35730464 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTA
1 CGTATAAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TA
* * * *
35730513 CGTGTAAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATA
1 CGTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
* * *
35730555 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATAGCTGGGATATGGCATC
35730585 ATTATGTGAA
Statistics
Matches: 145, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
42 31 0.21
43 1 0.01
44 5 0.03
45 1 0.01
46 26 0.18
47 39 0.27
48 11 0.08
49 31 0.21
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
Found at i:35730526 original size:49 final size:48
Alignment explanation
Indices: 35730369--35730628 Score: 212
Period size: 42 Copynumber: 5.7 Consensus size: 48
35730359 ACAAGTGATT
* * * * * * *
35730369 TTCGTATAAAACCATATCTGGGATATGGCATCG--GTGTGATATATGC
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
* * * * * * *
35730415 TACTGTATAAGACTATATCTGGGATATGGCATC-A-GTGAGATATGTGA
1 TTC-GTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
35730462 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
*
35730510 TTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A
1 TT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
35730555 -T-GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGA
* **
35730597 -T-GTGTAAGACCATAGTTGAACTATGGCATCGA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGA
35730629 GAAAACGAAG
Statistics
Matches: 188, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 64 0.34
43 1 0.01
44 1 0.01
45 1 0.01
46 28 0.15
47 40 0.21
48 14 0.07
49 38 0.20
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (48 bp):
TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA
Found at i:35732266 original size:12 final size:12
Alignment explanation
Indices: 35732246--35732283 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
35732236 TCTTAGCCAG
35732246 TTGTTCTTGCAT
1 TTGTTCTTGCAT
*
35732258 TTGTGCTTGCAT
1 TTGTTCTTGCAT
*
35732270 CTGTTCTTGCAT
1 TTGTTCTTGCAT
35732282 TT
1 TT
35732284 CCTTTTGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.08, C:0.18, G:0.18, T:0.55
Consensus pattern (12 bp):
TTGTTCTTGCAT
Found at i:35734705 original size:3 final size:3
Alignment explanation
Indices: 35734690--35734982 Score: 89
Period size: 3 Copynumber: 97.7 Consensus size: 3
35734680 ATGTTATGTA
* * * *
35734690 AAT AAT GAT AAT AAT AA- AAT AA- AA- AAT AGT AAT AAT AGT -AT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
35734734 TAT AAT AAT AGGA- AAC AAT AAT GAT AA- AAG AA- AAT AAT AGT AAT
1 AAT AAT AAT A--AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
35734778 AAT GGAAGT AAT GAA- AAT AAT AAT AAT AGA- AAC AAT AGT AAT AA-
1 AAT --AA-T AAT -AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* *
35734822 AAGT AAT AAT AA- AAT AGA- AAT AAC AAT GAT ACATT AAT AAT AAT AAT
1 AA-T AAT AAT AAT AAT A-AT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT
* ** * * *
35734869 -AT ACGT GCT AAT AAT AAT AAC AAT -AT AAA AAA AAT AA- AACT -AT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
* * * * *
35734912 ATT AAT AAA AAT AAT AAT AAT AGGTT AAT AAT AAT AGT AAT AAA AAGGT
1 AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT AAT AA--T
*
35734961 AAA AAT AAT AAT AA- AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
35734983 AAACACTATT
Statistics
Matches: 214, Mismatches: 43, Indels: 66
0.66 0.13 0.20
Matches are distributed among these distances:
2 29 0.14
3 163 0.76
4 12 0.06
5 9 0.04
6 1 0.00
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:35734939 original size:23 final size:23
Alignment explanation
Indices: 35734913--35734978 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
35734903 TAAAACTATA
35734913 TTAATAAAAATAATAATAATAGG
1 TTAATAAAAATAATAATAATAGG
* * *
35734936 TTAATAATAATAGTAATAAAAAGG
1 TTAATAAAAATAATAAT-AATAGG
35734960 -TAA-AAATAATAATAA-AATA
1 TTAATAAA-AATAATAATAATA
35734979 ATAAAAACAC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 2 0.06
23 25 0.71
24 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.29
Consensus pattern (23 bp):
TTAATAAAAATAATAATAATAGG
Found at i:35734983 original size:20 final size:20
Alignment explanation
Indices: 35734881--35734985 Score: 70
Period size: 20 Copynumber: 5.1 Consensus size: 20
35734871 ACGTGCTAAT
* * *
35734881 AATAATAACAATATAAAAAA
1 AATAATAATAAAATAATAAA
* *
35734901 AATAA-AACTATATTAATAAA
1 AATAATAA-TAAAATAATAAA
* *
35734921 AATAATAATAATAGGTTAATAAT
1 AATAATAATAA-A--ATAATAAA
* *
35734944 AATAGTAATAAAA-AGGTAAA
1 AATAATAATAAAATA-ATAAA
35734964 AATAATAATAAAATAATAAA
1 AATAATAATAAAATAATAAA
35734984 AA
1 AA
35734986 CACTATTACG
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
19 3 0.05
20 40 0.62
21 4 0.06
22 1 0.02
23 17 0.26
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.26
Consensus pattern (20 bp):
AATAATAATAAAATAATAAA
Found at i:35735064 original size:21 final size:21
Alignment explanation
Indices: 35735018--35735070 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
35735008 ATAATAAAAA
*
35735018 AGAA-AATAGTAATAGTATAT
1 AGAATAATAGTAAAAGTATAT
35735038 AGAATAATAGTAAAAGTA-AT
1 AGAATAATAGTAAAAGTATAT
*
35735058 --AATAATATTAAAA
1 AGAATAATAGTAAAA
35735071 ATAACACTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 12 0.40
20 6 0.20
21 12 0.40
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.28
Consensus pattern (21 bp):
AGAATAATAGTAAAAGTATAT
Found at i:35735254 original size:5 final size:5
Alignment explanation
Indices: 35735240--35735282 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
35735230 CTTTCGTATG
*
35735240 TAAAA AAAAA TAAAA TAAAA TTGAAAGA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA -T-AAA-A TAAAA TAAAA TAAAA
35735283 AAAGAACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 24 0.73
6 4 0.12
7 4 0.12
8 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:35735403 original size:25 final size:24
Alignment explanation
Indices: 35735352--35735403 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
35735342 ATCTCGTGTA
** *
35735352 TTTCTTGTATTGAAAGTCTCTCTT
1 TTTCTTGTATTGAAACCCTCTCCT
*
35735376 TTTCTTGTATTCGAATCCCTCTCCT
1 TTTCTTGTATT-GAAACCCTCTCCT
35735401 TTT
1 TTT
35735404 TTCTTCAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.13, C:0.23, G:0.10, T:0.54
Consensus pattern (24 bp):
TTTCTTGTATTGAAACCCTCTCCT
Found at i:35739723 original size:20 final size:20
Alignment explanation
Indices: 35739686--35739726 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
35739676 CATAATTTTT
**
35739686 TATATTTAAAATGTAATTTA
1 TATATTTAAAATAAAATTTA
*
35739706 TATATTTAAATTAAAATTTA
1 TATATTTAAAATAAAATTTA
35739726 T
1 T
35739727 TAATAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TATATTTAAAATAAAATTTA
Found at i:35740892 original size:94 final size:96
Alignment explanation
Indices: 35740714--35740896 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 96
35740704 GCACCTGCAT
* * *
35740714 TTTTCGTGTAAAAATTTCGATTCCAGAAAAGAGAAAAAAGATACATTTTTACCCAAAAGAATAGG
1 TTTTCGTGTAAAAATTTCAATTCCAGAAAAGAGAAAAAAGACACATTTATACCCAAAAGAATAGG
*
35740779 TTAGAGAAAGTAGTGTCAAATATAAGTCATA
66 TTAGAGAAAGCAGTGTCAAATATAAGTCATA
*
35740810 TTTTC-TGTAAAAATTTCAATTCCAGAAAGAGGGAAAAAA-ACACATTTAT-CCCAAAAGAATAG
1 TTTTCGTGTAAAAATTTCAATTCCAGAAA-AGAGAAAAAAGACACATTTATACCCAAAAGAATAG
35740872 GTTAGAGAAAGCAGAT-TCAAATATA
65 GTTAGAGAAAGCAG-TGTCAAATATA
35740897 TTAGAGGGAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
94 35 0.44
95 31 0.39
96 14 0.17
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (96 bp):
TTTTCGTGTAAAAATTTCAATTCCAGAAAAGAGAAAAAAGACACATTTATACCCAAAAGAATAGG
TTAGAGAAAGCAGTGTCAAATATAAGTCATA
Found at i:35743682 original size:6 final size:6
Alignment explanation
Indices: 35743671--35743705 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
35743661 CTTTTCTCGG
* *
35743671 TCCCTA TCCCTA TCCTTA TCTCTA TCCCTA TCCCT
1 TCCCTA TCCCTA TCCCTA TCCCTA TCCCTA TCCCT
35743706 GTGGCGATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.14, C:0.46, G:0.00, T:0.40
Consensus pattern (6 bp):
TCCCTA
Found at i:35743692 original size:24 final size:24
Alignment explanation
Indices: 35743658--35743705 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
35743648 CACGATCACG
* *
35743658 ATCCTTTTCTCGGTCCCTATCCCT
1 ATCCTTATCTCGATCCCTATCCCT
*
35743682 ATCCTTATCTCTATCCCTATCCCT
1 ATCCTTATCTCGATCCCTATCCCT
35743706 GTGGCGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.42, G:0.04, T:0.42
Consensus pattern (24 bp):
ATCCTTATCTCGATCCCTATCCCT
Found at i:35746012 original size:20 final size:19
Alignment explanation
Indices: 35745965--35746012 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
35745955 ATTTGGTTAA
35745965 AATTAAA-ACATATAATTT
1 AATTAAATACATATAATTT
* *
35745983 ATAATAAATACTATGTAATTT
1 A-ATTAAATAC-ATATAATTT
35746004 AATTAAATA
1 AATTAAATA
35746013 TTTAATAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 5 0.21
20 9 0.38
21 9 0.38
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (19 bp):
AATTAAATACATATAATTT
Found at i:35746139 original size:21 final size:21
Alignment explanation
Indices: 35746116--35746155 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
35746106 TTAAAAACAA
35746116 AAAATA-TA-TATCTAAAAATT
1 AAAATATTATTAT-TAAAAATT
35746136 AAAATATTATTATTAAAAAT
1 AAAATATTATTATTAAAAAT
35746156 AACTTCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 9 0.50
22 3 0.17
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATATTATTATTAAAAATT
Found at i:35749261 original size:30 final size:30
Alignment explanation
Indices: 35749227--35749323 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
35749217 TAAACTAAAA
35749227 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
35749257 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
35749287 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
35749317 TGAGCTA
1 TGAGCTA
35749324 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:35751193 original size:9 final size:9
Alignment explanation
Indices: 35751179--35751207 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
35751169 AAACAAAGAA
35751179 TCCTTACCT
1 TCCTTACCT
35751188 TCCTTACCT
1 TCCTTACCT
35751197 TCCTTACCT
1 TCCTTACCT
35751206 TC
1 TC
35751208 GATCGCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.00, T:0.45
Consensus pattern (9 bp):
TCCTTACCT
Found at i:35751463 original size:30 final size:29
Alignment explanation
Indices: 35751426--35751509 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 29
35751416 TTCTTTTGTT
*
35751426 TCAATTTCTTTTTCATCTTTTTTTCACTC
1 TCAATTTCTTTTTCATCTTTTTTTCAATC
* *
35751455 TCAAATTTC-TTTTCGTTCTCTTTTTCAATC
1 TC-AATTTCTTTTTC-ATCTTTTTTTCAATC
* *
35751485 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAATTTCTTTTTCATCTT-TTTTT
35751510 GATTTTCAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
29 14 0.32
30 30 0.68
ACGTcount: A:0.13, C:0.21, G:0.01, T:0.64
Consensus pattern (29 bp):
TCAATTTCTTTTTCATCTTTTTTTCAATC
Found at i:35751500 original size:12 final size:12
Alignment explanation
Indices: 35751485--35751516 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
35751475 TTTTTCAATC
35751485 TCATTTTCTTTT
1 TCATTTTCTTTT
35751497 TCATTTTCTTTT
1 TCATTTTCTTTT
*
35751509 TGATTTTC
1 TCATTTTC
35751517 AAAGGCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.16, G:0.03, T:0.72
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:35751588 original size:5 final size:5
Alignment explanation
Indices: 35751578--35751634 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
35751568 CTTTTGCCTC
*
35751578 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTTT TCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TC-TTT TC-TTT TCTTT
35751625 TCTTT TCTTT
1 TCTTT TCTTT
35751635 GTTTTCTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 4 0.09
5 26 0.58
6 14 0.31
7 1 0.02
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:35751644 original size:16 final size:16
Alignment explanation
Indices: 35751576--35751645 Score: 83
Period size: 16 Copynumber: 4.4 Consensus size: 16
35751566 GCCTTTTGCC
*
35751576 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
35751592 T-TCGTTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
35751608 TCT-TTTTCTTTTTCT
1 TCTCTTTTCTTTTTCT
*
35751623 TTTCTTTTCTTTGTT-T
1 TCTCTTTTCTTT-TTCT
35751639 TCTCTTT
1 TCTCTTT
35751646 ACAAGAATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
15 16 0.34
16 28 0.60
17 3 0.06
ACGTcount: A:0.01, C:0.19, G:0.03, T:0.77
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:35754288 original size:30 final size:30
Alignment explanation
Indices: 35754254--35754350 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
35754244 TAAACTAAAA
35754254 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
35754284 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
35754314 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
35754344 TGAGCTA
1 TGAGCTA
35754351 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:35770502 original size:28 final size:28
Alignment explanation
Indices: 35770463--35770584 Score: 108
Period size: 28 Copynumber: 4.5 Consensus size: 28
35770453 ACTTTCTCAA
*
35770463 TAGATAGCCCTTGCAGACTTTCCCTTAT
1 TAGATAGTCCTTGCAGACTTTCCCTTAT
* *
35770491 TAAATAGTCCTTGCATG-CTTTCCC-AAT
1 TAGATAGTCCTTGCA-GACTTTCCCTTAT
* * * *
35770518 T-GATAATCCTTACGGACTTTCCCTCAT
1 TAGATAGTCCTTGCAGACTTTCCCTTAT
* ** *
35770545 TAGATAGTCTTTGC-GGGTTTCCCATAT
1 TAGATAGTCCTTGCAGACTTTCCCTTAT
35770572 TAGATAGTCCTTG
1 TAGATAGTCCTTG
35770585 TGAAGTTCTC
Statistics
Matches: 74, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.01
26 16 0.22
27 27 0.36
28 29 0.39
29 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (28 bp):
TAGATAGTCCTTGCAGACTTTCCCTTAT
Found at i:35773250 original size:23 final size:23
Alignment explanation
Indices: 35773198--35773250 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
35773188 AATTCTAAAC
*
35773198 AAATTCTAAAGAATATATAAAAA
1 AAATTTTAAAGAATATATAAAAA
*
35773221 AAGTTTTAAA-AAT-TATAAAATA
1 AAATTTTAAAGAATATATAAAA-A
35773243 ATAATTTT
1 A-AATTTT
35773251 TGGGACCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 7 0.28
22 5 0.20
23 13 0.52
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATTTTAAAGAATATATAAAAA
Found at i:35773791 original size:20 final size:20
Alignment explanation
Indices: 35773766--35773805 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
35773756 CATGACGGAA
35773766 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
35773786 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
35773806 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:35785215 original size:3 final size:3
Alignment explanation
Indices: 35785207--35785248 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
35785197 CTTTATTAAA
*
35785207 TAT TAT TAT TAT T-T CTAA TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TA
35785249 GTGTATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 1 0.03
3 30 0.88
4 3 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:35785298 original size:6 final size:6
Alignment explanation
Indices: 35785264--35785288 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
35785254 TATTTTTTAT
35785264 TGTATA TGTATA TGTATA TGTATA T
1 TGTATA TGTATA TGTATA TGTATA T
35785289 ATATTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:35785405 original size:26 final size:27
Alignment explanation
Indices: 35785376--35785465 Score: 84
Period size: 26 Copynumber: 3.4 Consensus size: 27
35785366 TGATCATTAT
35785376 TATTATTATTATTATATAT-TA-ATGTA
1 TATTATT-TTATTATATATGTATATGTA
*
35785402 TATT-TTTTATTGTATATGTATATGTA
1 TATTATTTTATTATATATGTATATGTA
* *
35785428 TA-TATATTTA-TATATA-GTATTATTTT
1 TATTAT-TTTATTATATATGTA-TATGTA
35785454 TATTATTTTATT
1 TATTATTTTATT
35785466 TTAATACTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
24 10 0.19
25 8 0.15
26 27 0.51
27 8 0.15
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (27 bp):
TATTATTTTATTATATATGTATATGTA
Found at i:35785652 original size:3 final size:3
Alignment explanation
Indices: 35785644--35785675 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
35785634 TTTGTATTTC
35785644 ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT A
35785676 GTGTATACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:35785704 original size:24 final size:21
Alignment explanation
Indices: 35785677--35785720 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
35785667 TATATATTAG
35785677 TGTATACTTTATTATATACGTATA
1 TGTATA-TTTA-TATATA-GTATA
35785701 TGTATATTTATATATAGTAT
1 TGTATATTTATATATAGTAT
35785721 TATTTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 6 0.30
23 4 0.20
24 6 0.30
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (21 bp):
TGTATATTTATATATAGTATA
Found at i:35785826 original size:71 final size:73
Alignment explanation
Indices: 35785691--35785828 Score: 199
Period size: 71 Copynumber: 1.9 Consensus size: 73
35785681 TACTTTATTA
* * * * *
35785691 TATACGTATATGTATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTTATTAT
1 TATACGTATA-GTATATTTATACATAGTACTATTTTTAATTACTTTATTTTAACATTATTATTAT
35785756 ATATGTATG
65 ATATGTATG
*
35785765 TATACGTATA-TATATTTATACATAGTACTA-TTTTAATTACTTTATTTTAACGTTATTATTATA
1 TATACGTATAGTATATTTATACATAGTACTATTTTTAATTACTTTATTTTAACATTATTATTATA
35785828 T
66 T
35785829 TATATTTGTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
71 30 0.52
72 18 0.31
74 10 0.17
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.57
Consensus pattern (73 bp):
TATACGTATAGTATATTTATACATAGTACTATTTTTAATTACTTTATTTTAACATTATTATTATA
TATGTATG
Found at i:35794867 original size:77 final size:77
Alignment explanation
Indices: 35794704--35794882 Score: 220
Period size: 77 Copynumber: 2.4 Consensus size: 77
35794694 TGGTTTGGTA
* **
35794704 TCCT-GATATTTT-TATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAAAGGTGAGTTGGGC
1 TCCTAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAAAGGTGAGTTGACC
* *
35794767 CTCGGATCACAC
66 CTCAGACCACAC
* * * * *
35794779 GCCGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACC
1 TCCTAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAAAGGTGAGTTGACC
*
35794844 CTCTAG-CCACAT
66 CTC-AGACCACAC
*
35794856 TCCTAGATATTTTCAATTTCTTTTTTT
1 TCCTAGATATTTTCAATTTCTGTTTTT
35794883 AATTTATGCT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
75 2 0.02
76 7 0.08
77 76 0.88
78 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (77 bp):
TCCTAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAAAGGTGAGTTGACC
CTCAGACCACAC
Found at i:35794972 original size:90 final size:89
Alignment explanation
Indices: 35794786--35794972 Score: 225
Period size: 90 Copynumber: 2.1 Consensus size: 89
35794776 CACGCCGAGG
* * * *
35794786 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCTAGC
1 TATTTTTAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGAGC
*
35794851 CACATTCCTAGATATTTTCAATTTC
66 CACA-TCCTAGATATTTTCAATTCC
* * * * *
35794876 TTTTTTTAATTTATGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TATTTTTAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGAGC
*
35794941 CACA-CGCTGAGGTATCTTT-AATTCC
66 CACATC-CT-AGATAT-TTTCAATTCC
35794966 TATTTTT
1 TATTTTT
35794973 CAATAAATCA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
88 1 0.01
89 2 0.02
90 76 0.93
91 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (89 bp):
TATTTTTAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGAGC
CACATCCTAGATATTTTCAATTCC
Found at i:35795107 original size:79 final size:76
Alignment explanation
Indices: 35794892--35795189 Score: 445
Period size: 76 Copynumber: 3.9 Consensus size: 76
35794882 TAATTTATGC
*
35794892 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATC
1 TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
*
35794957 TTTAAT-TCCTAT
65 TTTAGTCT-CTAT
*
35794969 TTTTCAATAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
35795034 TTAGTCTCTAT
66 TTAGTCTCTAT
35795045 TTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA
1 TTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA
*
35795110 TTTTTAGTCTCTGT
63 TTTTTAGTCTCTAT
** * * ** *
35795124 TTTTCAAAAAATCAACTCATATTGTAAAAGGTGAGTTGAACCTTTGGTCACACACTGAGGTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
35795189 T
66 T
35795190 CAAATTTTTT
Statistics
Matches: 205, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
76 123 0.60
77 8 0.04
79 74 0.36
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (76 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
TTAGTCTCTAT
Found at i:35795158 original size:155 final size:155
Alignment explanation
Indices: 35794900--35795189 Score: 465
Period size: 155 Copynumber: 1.9 Consensus size: 155
35794890 GCTTTTCAAG
35794900 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATCTTTAATTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATCTTTAATTC
* * * * *
35794965 CTATTTTTCAATAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGT
66 CTATTTTTCAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAACCTCGGGTCACACACTGAGGT
35795030 ATTTTTAGTCTCTATTTTTCAAAAA
131 ATTTTTAGTCTCTATTTTTCAAAAA
* *
35795055 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTAT-TTTTAGTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATCTTTAATTC
* * **
35795119 TCTGTTTTTCAAAAAATCAACTCATATTGTAAAAGGTGAGTTGAACCTTTGGTCACACACTGAGG
66 -CTATTTTTCAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAACCTCGGGTCACACACTGAGG
35795184 TATTTT
130 TATTTT
35795190 CAAATTTTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
154 6 0.05
155 117 0.95
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (155 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATCTTTAATTC
CTATTTTTCAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAACCTCGGGTCACACACTGAGGT
ATTTTTAGTCTCTATTTTTCAAAAA
Done.