Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 119 of 325
Found at i:37176715 original size:40 final size:40
Alignment explanation
Indices: 37176585--37176703 Score: 202
Period size: 40 Copynumber: 3.0 Consensus size: 40
37176575 ACAGACCATG
* * * *
37176585 TGGGGATGAAATCGACTCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATTGACCCATCCAGCCCTACACACCAAGTA
37176625 TGGGGATAAAATTGACCCATCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATTGACCCATCCAGCCCTACACACCAAGTA
37176665 TGGGGATAAAATTGACCCATCCAGCCCTACACACCAAGT
1 TGGGGATAAAATTGACCCATCCAGCCCTACACACCAAGT
37176704 GGTACTGTAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.34, C:0.31, G:0.18, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATTGACCCATCCAGCCCTACACACCAAGTA
Found at i:37185295 original size:35 final size:36
Alignment explanation
Indices: 37185195--37185323 Score: 138
Period size: 35 Copynumber: 3.5 Consensus size: 36
37185185 GGCAAAGTGT
* **
37185195 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
37185230 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATC----CCATACTGAGTTAA
* *
37185270 GAAATGTAGGTATGGCATT-TCCCATACCGAGTTGAA
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTT-AA
*
37185306 -AAATATAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
37185324 TCAATGAGGA
Statistics
Matches: 81, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
35 48 0.59
36 2 0.02
39 2 0.02
40 29 0.36
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (36 bp):
GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
Found at i:37186527 original size:30 final size:30
Alignment explanation
Indices: 37186477--37186534 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37186467 GCTCGTGTCG
*
37186477 TTCACCCGTGTGACCCACAAGCCCGTGCAA
1 TTCACCCGTGTAACCCACAAGCCCGTGCAA
* *
37186507 TTCACCTGTGTAACCTACAAGCCCGTGC
1 TTCACCCGTGTAACCCACAAGCCCGTGC
37186535 GGTTTACACG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.38, G:0.19, T:0.21
Consensus pattern (30 bp):
TTCACCCGTGTAACCCACAAGCCCGTGCAA
Found at i:37187550 original size:40 final size:40
Alignment explanation
Indices: 37187495--37187571 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
37187485 AGGCCATGTA
*
37187495 GGGATAAAATCGACCCACCCAGCCTTACACACCAAGTATG
1 GGGATAAAATCGACCCACCCAGCCCTACACACCAAGTATG
* *
37187535 GGGATAAAATCGACCCATCTAGCCCTACACACCAAGT
1 GGGATAAAATCGACCCACCCAGCCCTACACACCAAGT
37187572 GGTACAGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.32, G:0.17, T:0.16
Consensus pattern (40 bp):
GGGATAAAATCGACCCACCCAGCCCTACACACCAAGTATG
Found at i:37187583 original size:40 final size:39
Alignment explanation
Indices: 37187498--37187583 Score: 93
Period size: 40 Copynumber: 2.2 Consensus size: 39
37187488 CCATGTAGGG
* **
37187498 ATAAAATCGACCCACCCAGCCTTACACACCAAGTATGGGG
1 ATAAAATCGACCCACCCAGCCCTACACACCAAG-ATGGAC
* *
37187538 ATAAAATCGACCCATCTAGCCCTACACACCAAG-TGGTAC
1 ATAAAATCGACCCACCCAGCCCTACACACCAAGATGG-AC
37187577 AGTAAAA
1 A-TAAAA
37187584 CAGTACATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
38 3 0.08
39 1 0.03
40 35 0.90
ACGTcount: A:0.38, C:0.30, G:0.15, T:0.16
Consensus pattern (39 bp):
ATAAAATCGACCCACCCAGCCCTACACACCAAGATGGAC
Found at i:37195231 original size:29 final size:29
Alignment explanation
Indices: 37195198--37195266 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
37195188 TGTGTGTACC
*
37195198 ATGTGAAAAGGGATAGCTTCTGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
37195227 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
37195256 ATATGAAAAGG
1 ATGTGAAAAGG
37195267 AAATGTATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.25
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:37198309 original size:11 final size:11
Alignment explanation
Indices: 37198293--37198320 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
37198283 TTATTTTATA
37198293 TTCTTTCAACT
1 TTCTTTCAACT
37198304 TTCTTTCAACT
1 TTCTTTCAACT
37198315 TTCTTT
1 TTCTTT
37198321 ATTTTCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.25, G:0.00, T:0.61
Consensus pattern (11 bp):
TTCTTTCAACT
Found at i:37206939 original size:31 final size:31
Alignment explanation
Indices: 37206901--37206961 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
37206891 AAATGAAGAG
37206901 AGTGGGTGTAACATCCCAAAAATTATGTTAT
1 AGTGGGTGTAACATCCCAAAAATTATGTTAT
37206932 AGTGGGTGTAACATCCCAAAAATTATGTTA
1 AGTGGGTGTAACATCCCAAAAATTATGTTA
37206962 GAAGAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (31 bp):
AGTGGGTGTAACATCCCAAAAATTATGTTAT
Found at i:37208472 original size:42 final size:43
Alignment explanation
Indices: 37208392--37208506 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
37208382 CTCAGACGTA
* *
37208392 GTCTTACATGTAATCAAACATCGATGCCACTATCCTAGATAGG
1 GTCTTACATGAAATCAAACATCGATGCCACTATCCTAGACAGG
* * * *
37208435 GTCTTACATGAAATCAAATA-CGATGTCGA-TGTCCTAGACATG
1 GTCTTACATGAAATCAAACATCGATG-CCACTATCCTAGACAGG
* * *
37208477 GTCTTAAATGTAAAACAAAAATCGATGCCA
1 GTCTTACATG-AAATCAAACATCGATGCCA
37208507 ATTTTCCAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.41
43 30 0.51
44 5 0.08
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCTTACATGAAATCAAACATCGATGCCACTATCCTAGACAGG
Found at i:37210506 original size:12 final size:12
Alignment explanation
Indices: 37210486--37210524 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
37210476 CACATGGGCA
*
37210486 TGTGCTAGGCCG
1 TGTGATAGGCCG
*
37210498 TGTGATAGGCTG
1 TGTGATAGGCCG
*
37210510 TGTGACAGGCCG
1 TGTGATAGGCCG
37210522 TGT
1 TGT
37210525 AACCCATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.13, C:0.18, G:0.41, T:0.28
Consensus pattern (12 bp):
TGTGATAGGCCG
Found at i:37218125 original size:13 final size:13
Alignment explanation
Indices: 37218107--37218132 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37218097 CTGTGCATTC
37218107 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
37218120 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
37218133 AACAAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:37219923 original size:30 final size:30
Alignment explanation
Indices: 37219889--37219947 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
37219879 CAGTTAATCG
37219889 AACGAATTCGGTTAATCGGTCGGTTAACCA
1 AACGAATTCGGTTAATCGGTCGGTTAACCA
37219919 AACGAATTCGGTTAATCGGTCGGTTAACC
1 AACGAATTCGGTTAATCGGTCGGTTAACC
37219948 GAATTAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (30 bp):
AACGAATTCGGTTAATCGGTCGGTTAACCA
Found at i:37220192 original size:5 final size:5
Alignment explanation
Indices: 37220154--37220179 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37220144 TAACCCAAGT
37220154 ACCCA ACCCA ACCCA ACCCA ACCCA A
1 ACCCA ACCCA ACCCA ACCCA ACCCA A
37220180 TTTCCCAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (5 bp):
ACCCA
Found at i:37220193 original size:13 final size:13
Alignment explanation
Indices: 37220170--37220194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37220160 CCCAACCCAA
37220170 CCCAACCCAATTT
1 CCCAACCCAATTT
37220183 CCCAACCCAATT
1 CCCAACCCAATT
37220195 ATAAAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (13 bp):
CCCAACCCAATTT
Found at i:37220232 original size:6 final size:6
Alignment explanation
Indices: 37220221--37220270 Score: 73
Period size: 6 Copynumber: 8.0 Consensus size: 6
37220211 AATTAATAAG
*
37220221 TAAAAA TAAAAA TCTAAAAC TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA --TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
37220271 ACATATAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 35 0.88
8 5 0.12
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:37220304 original size:9 final size:9
Alignment explanation
Indices: 37220290--37220348 Score: 57
Period size: 9 Copynumber: 6.6 Consensus size: 9
37220280 TTTATACAAA
37220290 TAATTCGGT
1 TAATTCGGT
37220299 TAATTCGGT
1 TAATTCGGT
* *
37220308 TAATTTGGG
1 TAATTCGGT
37220317 TAATTCAGG-
1 TAATTC-GGT
**
37220326 TAATTCAAT
1 TAATTCGGT
*
37220335 TAATTCTGT
1 TAATTCGGT
37220344 TAATT
1 TAATT
37220349 TTATACTTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
9 39 0.95
10 2 0.05
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:37222109 original size:4 final size:4
Alignment explanation
Indices: 37222100--37222126 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
37222090 TCTTAAAAAA
37222100 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
37222127 TTAGTAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:37223049 original size:61 final size:61
Alignment explanation
Indices: 37222931--37223059 Score: 152
Period size: 61 Copynumber: 2.1 Consensus size: 61
37222921 GTGGGAAATC
* ** * * *
37222931 AACACGGCCTGGACTTCCCTACACTGGTATTCCACAAGCCCGTATAGTGTTAGCAGACTCT
1 AACACGGCCTGGACTTCCCTACACGGGTAGACCACAAGCCCGTATACTATTAACAGACTCT
* * * *
37222992 AACACGGCCTGGACTTCCTTACACGGGTAGACCACACGGCCGTGT-CTATTCAACAGACTCT
1 AACACGGCCTGGACTTCCCTACACGGGTAGACCACAAGCCCGTATACTATT-AACAGACTCT
37223053 AACACGG
1 AACACGG
37223060 TTTGAAGCAC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 3 0.05
61 54 0.95
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.22
Consensus pattern (61 bp):
AACACGGCCTGGACTTCCCTACACGGGTAGACCACAAGCCCGTATACTATTAACAGACTCT
Found at i:37223904 original size:13 final size:13
Alignment explanation
Indices: 37223886--37223911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37223876 CTGTGCATTC
37223886 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
37223899 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
37223912 AACAAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:37224823 original size:22 final size:23
Alignment explanation
Indices: 37224780--37224824 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
37224770 ATAATGTGTT
* *
37224780 GGGTTGGACGGAGATGGTATGCA
1 GGGTTGGACGGAGATAGCATGCA
*
37224803 GGGTTGGA-TGAGATAGCATGCA
1 GGGTTGGACGGAGATAGCATGCA
37224825 TCCATGCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.24, C:0.09, G:0.44, T:0.22
Consensus pattern (23 bp):
GGGTTGGACGGAGATAGCATGCA
Found at i:37227765 original size:40 final size:39
Alignment explanation
Indices: 37227715--37227813 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
37227705 TTACGGTACC
* * *
37227715 ATTGGATGTGTAGGGTTGGATAGGTTGATTTTATCCCTAT
1 ATTGG-TGTGTAGGGTTGGATAGGTCGATTCTATCCCCAT
* * *
37227755 ACTTGGTGTGTAAGGCTGGGTAGGTCGATTCTATCCCCAT
1 A-TTGGTGTGTAGGGTTGGATAGGTCGATTCTATCCCCAT
*
37227795 A-TGGTGTGTTGGGTTGGAT
1 ATTGGTGTGTAGGGTTGGAT
37227814 GAATATAGTG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
38 14 0.29
40 30 0.62
41 4 0.08
ACGTcount: A:0.17, C:0.11, G:0.33, T:0.38
Consensus pattern (39 bp):
ATTGGTGTGTAGGGTTGGATAGGTCGATTCTATCCCCAT
Found at i:37229689 original size:18 final size:19
Alignment explanation
Indices: 37229666--37229723 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 19
37229656 ACGTGGCAGT
*
37229666 CCAACTAGATTT-TAGATG
1 CCAACTAGATTTCTAAATG
*
37229684 CCAACTTGGATTTCTAAATG
1 CCAAC-TAGATTTCTAAATG
*
37229704 CCAACTTGGATTTCTAAATG
1 CCAAC-TAGATTTCTAAATG
37229724 GGATGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.14
19 6 0.17
20 25 0.69
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (19 bp):
CCAACTAGATTTCTAAATG
Found at i:37229706 original size:20 final size:20
Alignment explanation
Indices: 37229681--37229723 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
37229671 TAGATTTTAG
37229681 ATGCCAACTTGGATTTCTAA
1 ATGCCAACTTGGATTTCTAA
37229701 ATGCCAACTTGGATTTCTAA
1 ATGCCAACTTGGATTTCTAA
37229721 ATG
1 ATG
37229724 GGATGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (20 bp):
ATGCCAACTTGGATTTCTAA
Found at i:37229757 original size:13 final size:14
Alignment explanation
Indices: 37229739--37229795 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 14
37229729 AAAATAGATT
37229739 TTTAATTAA-AAAA
1 TTTAATTAATAAAA
37229752 TTTAATTAATTAAAA
1 TTTAATTAA-TAAAA
37229767 TTT--TTAAACCTAAAA
1 TTTAATT-AA--TAAAA
37229782 TTTAATTAA-AAAA
1 TTTAATTAATAAAA
37229795 T
1 T
37229796 ATGTTCATCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 16 0.43
14 2 0.05
15 15 0.41
16 2 0.05
17 2 0.05
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (14 bp):
TTTAATTAATAAAA
Found at i:37231455 original size:20 final size:19
Alignment explanation
Indices: 37231423--37231471 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
37231413 AAAATTAATT
* *
37231423 AAAAATTCTAAAAGTAAAA
1 AAAAATTATAAAAGCAAAA
*
37231442 AAAAATTATCAAAAGCATAA
1 AAAAATTAT-AAAAGCAAAA
*
37231462 AAAAGTTATA
1 AAAAATTATA
37231472 GAGTTAATTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.22
Consensus pattern (19 bp):
AAAAATTATAAAAGCAAAA
Found at i:37234779 original size:18 final size:18
Alignment explanation
Indices: 37234748--37234782 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37234738 TCAATTATTT
**
37234748 TATTTTATTTTATTTTTA
1 TATTTTATAATATTTTTA
37234766 TATTTTATAATATTTTT
1 TATTTTATAATATTTTT
37234783 TTTATCTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTATAATATTTTTA
Found at i:37234779 original size:23 final size:22
Alignment explanation
Indices: 37234743--37234785 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
37234733 ATAACTCAAT
**
37234743 TATTTTATTTTATTTTATTTTTA
1 TATTTTATAATATTTT-TTTTTA
37234766 TATTTTATAATATTTTTTTT
1 TATTTTATAATATTTTTTTT
37234786 ATCTATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (22 bp):
TATTTTATAATATTTTTTTTTA
Found at i:37249276 original size:44 final size:43
Alignment explanation
Indices: 37249168--37249811 Score: 317
Period size: 44 Copynumber: 14.9 Consensus size: 43
37249158 ATTATACATG
* * * **
37249168 TCTTATTTCCCTGAGACTACAGTGGAACAGACCGAAGAATTTCAG-A
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-A--T-AGAA
*
37249214 TCTTATCT-CCTGAGATTACAGCGGAGCAGATTGAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAG-AA
* * * * *
37249257 TCCTATCTCCCTGATATTACAGTGGAGCGGATTAAAACGA-AGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GATAGAA
* * * * **
37249301 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--TTTCAG-A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGAA
*
37249342 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAG-AA
* * * * *
37249386 TCCTATCTCCCTGATATTACAGTGGAGCGGATTAAAACGA-AGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GATAGAA
* * * * **
37249430 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--TTTCAG-A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGAA
*
37249471 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAG-AA
* * * * *
37249515 TCCTATCTCCCTGATATTACAGTGGAGCGGATTAAAACGA-AGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GATAGAA
* * * * *
37249559 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TG-TCAG-A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGAA
** * *
37249600 TCTTATCTCCCTGAGATTACAGCAGAGCAGATTAAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAG-AA
* * * *
37249644 TCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATGAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT--AGAA
* ** * * * *
37249688 TCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCG-TG-TCAG-G
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGAA
* * ** *
37249729 TCTTATTTCCCTGAGATTACAGCGGAATAGACTGAAGAATTTCAG-A
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-A--T-AGAA
* *
37249775 TCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAG
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG
37249812 CCGATAATCC
Statistics
Matches: 454, Mismatches: 101, Indels: 86
0.71 0.16 0.13
Matches are distributed among these distances:
41 113 0.25
42 21 0.05
43 19 0.04
44 215 0.47
45 37 0.08
46 49 0.11
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGAA
Found at i:37249361 original size:85 final size:85
Alignment explanation
Indices: 37249260--37249635 Score: 266
Period size: 85 Copynumber: 4.4 Consensus size: 85
37249250 ATAGTAATCC
* * *
37249260 TATCTCCCTGATATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAACGAAGGATCTTATCTCCCTGAAGTTACAGTA
* *
37249325 GAGTAGATCGTTTCAGATCT
66 GAGCAGATCGTATCAGATCT
* * * *
37249345 TATCTCCCTGAGATTACAGCGGAGCAGATT-GAA-GATAGTAATCCTATCTCCCTGATA-TTACA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAACGA-AG-GATCTTATCTCCCTGA-AGTTACA
* * *** *
37249407 GTGGAGCGGATTAAAACGAAGGATCT
63 GTAGAGCAGATCGTATC--A-GATCT
* * * *****
37249433 TATCTCTCTGA-AGTTACAGTAGAGTAGATCGTTTC--A-GATCTTATCTCCCTG-AGATTACAG
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAACGAAGGATCTTATCTCCCTGAAG-TTACAG
** * * *
37249493 CGGAGCAGATTGAAGAT-AGTAATCC
64 TAGAGCAGATCG--TATCAG--ATCT
* * *
37249518 TATCTCCCTGATATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAACGAAGGATCTTATCTCCCTGAAGTTACAGTA
* *
37249583 GAGTAGATCGTGTCAGATCT
66 GAGCAGATCGTATCAGATCT
**
37249603 TATCTCCCTGAGATTACAGCAGAGCAGATTAAA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAA
37249636 GCTAGTAATC
Statistics
Matches: 218, Mismatches: 52, Indels: 42
0.70 0.17 0.13
Matches are distributed among these distances:
83 4 0.02
84 5 0.02
85 141 0.65
86 3 0.01
87 7 0.03
88 56 0.26
89 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (85 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATTAAAACGAAGGATCTTATCTCCCTGAAGTTACAGTA
GAGCAGATCGTATCAGATCT
Found at i:37249362 original size:129 final size:129
Alignment explanation
Indices: 37249207--37249754 Score: 999
Period size: 129 Copynumber: 4.3 Consensus size: 129
37249197 GACCGAAGAA
37249207 TTTCAGATCTTATCT-CCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
1 TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
37249271 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
37249335 TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
1 TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
37249400 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
37249464 TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
1 TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
37249529 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
66 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
* * * *
37249593 TGTCAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGA
1 TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
* * *
37249658 GATTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCG
66 TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
* * *
37249722 TGTCAGGTCTTATTTCCCTGAGATTACAGCGGA
1 TTTCAGATCTTATCTCCCTGAGATTACAGCGGA
37249755 ATAGACTGAA
Statistics
Matches: 409, Mismatches: 10, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
128 15 0.04
129 394 0.96
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (129 bp):
TTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGA
TATTACAGTGGAGCGGATTAAAACGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
Found at i:37253252 original size:21 final size:21
Alignment explanation
Indices: 37253227--37253266 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37253217 AAAGTTTTAA
*
37253227 TAATTTTTTTAGTTTAATCCT
1 TAATTTTTTTAGTTAAATCCT
37253248 TAATTTTTTTAGTTAAATC
1 TAATTTTTTTAGTTAAATC
37253267 AAATACTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (21 bp):
TAATTTTTTTAGTTAAATCCT
Found at i:37258618 original size:30 final size:29
Alignment explanation
Indices: 37258566--37258622 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
37258556 CCACATCTTC
*
37258566 ACTCAATCGATTACTATCTTTAAATTAAAA
1 ACTCAATCGATTACAATCTTT-AATTAAAA
*
37258596 ACTCAATCGATTGCAAAT-TTTAATTAA
1 ACTCAATCGATTAC-AATCTTTAATTAA
37258623 GAGTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.25
30 16 0.67
31 2 0.08
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (29 bp):
ACTCAATCGATTACAATCTTTAATTAAAA
Found at i:37259542 original size:43 final size:43
Alignment explanation
Indices: 37259493--37259581 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
37259483 TTACCCAAAA
37259493 TACAAACATTAATATTATCCCACCAATTTGAATGTCGAGTTCT
1 TACAAACATTAATATTATCCCACCAATTTGAATGTCGAGTTCT
37259536 TACAAACATTAATATTATCCCACCAATTTGAATGTCGAGTTCT
1 TACAAACATTAATATTATCCCACCAATTTGAATGTCGAGTTCT
37259579 TAC
1 TAC
37259582 TTTTATATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (43 bp):
TACAAACATTAATATTATCCCACCAATTTGAATGTCGAGTTCT
Found at i:37261808 original size:28 final size:31
Alignment explanation
Indices: 37261750--37261810 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
37261740 ACAACATTCG
*
37261750 TATATTTATTGAATCCATTTTACTTTGATAAA
1 TATATTTATTGAATCAATTTTAC-TTGATAAA
*
37261782 TATATTTTTTGAA-CAATTTTA-TT-ATAAA
1 TATATTTATTGAATCAATTTTACTTGATAAA
37261810 T
1 T
37261811 TCTAATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 6 0.22
29 2 0.07
31 7 0.26
32 12 0.44
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (31 bp):
TATATTTATTGAATCAATTTTACTTGATAAA
Found at i:37267881 original size:22 final size:24
Alignment explanation
Indices: 37267856--37267899 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
37267846 GGCACGTTAT
37267856 TTTTTGTTC-TGT-TTCTTCTTGG
1 TTTTTGTTCTTGTGTTCTTCTTGG
37267878 TTTTTGTTCTTGTGTTCTTCTT
1 TTTTTGTTCTTGTGTTCTTCTT
37267900 TTTGCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.16, T:0.70
Consensus pattern (24 bp):
TTTTTGTTCTTGTGTTCTTCTTGG
Found at i:37272288 original size:20 final size:19
Alignment explanation
Indices: 37272263--37272312 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 19
37272253 GATATACATT
*
37272263 ATTAATTCATTAATCATTTA
1 ATTAATTAATTAATC-TTTA
37272283 ATTAATCTAATTAATCTTTA
1 ATTAAT-TAATTAATCTTTA
37272303 ATTAATTAAT
1 ATTAATTAAT
37272313 CTTAATCTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 4 0.14
20 16 0.57
21 8 0.29
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAATTAATTAATCTTTA
Found at i:37272310 original size:15 final size:16
Alignment explanation
Indices: 37272284--37272320 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
37272274 AATCATTTAA
37272284 TTAATCTAATTAATCT
1 TTAATCTAATTAATCT
37272300 TTAAT-TAATTAATC-
1 TTAATCTAATTAATCT
37272314 TTAATCT
1 TTAATCT
37272321 CAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 10 0.50
16 5 0.25
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATCTAATTAATCT
Found at i:37273082 original size:16 final size:15
Alignment explanation
Indices: 37273061--37273105 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
37273051 ATTAAATTTT
37273061 ATTAATTGAGATTAAG
1 ATTAATT-AGATTAAG
37273077 ATTAATTA-ATTAAAG
1 ATTAATTAGATT-AAG
*
37273092 ATTTATTAGATTAA
1 ATTAATTAGATTAA
37273106 TTAAATGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 3 0.12
15 13 0.50
16 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (15 bp):
ATTAATTAGATTAAG
Found at i:37273104 original size:20 final size:19
Alignment explanation
Indices: 37273077--37273131 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
37273067 TGAGATTAAG
*
37273077 ATTAATTAATTAAAGATTT
1 ATTAATTAATTAAAGATTA
37273096 ATTAGATTAATTAAATGATTA
1 ATTA-ATTAATTAAA-GATTA
*
37273117 ATGAATTAATTAAAG
1 ATTAATTAATTAAAG
37273132 TATATACATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.16
20 20 0.62
21 7 0.22
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (19 bp):
ATTAATTAATTAAAGATTA
Found at i:37277227 original size:71 final size:71
Alignment explanation
Indices: 37277145--37277290 Score: 238
Period size: 71 Copynumber: 2.1 Consensus size: 71
37277135 CCATCAGAGT
* * * *
37277145 ATCGATAAAAGTGCAGGGGATGTTGAACTTTGGCTACTGACTTGACTTGTTTCAGTAGAAGTCCT
1 ATCGATAAAAGTACAAGAGATGTTGAACTTTGGCTACTAACTTGACTTGTTTCAGTAGAAGTCCT
37277210 CAAGGA
66 CAAGGA
*
37277216 ATCGATAAAAGTACAAGAGATGTTGAACTTTTGCTACTAACTTGACTTGTTTCAGTAGAAGTCCT
1 ATCGATAAAAGTACAAGAGATGTTGAACTTTGGCTACTAACTTGACTTGTTTCAGTAGAAGTCCT
*
37277281 CAAGGT
66 CAAGGA
37277287 ATCG
1 ATCG
37277291 GTAGCACTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (71 bp):
ATCGATAAAAGTACAAGAGATGTTGAACTTTGGCTACTAACTTGACTTGTTTCAGTAGAAGTCCT
CAAGGA
Found at i:37279488 original size:22 final size:20
Alignment explanation
Indices: 37279463--37279525 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 20
37279453 TCCAAACAAT
37279463 AACAACAAAATAGTGAAATGAC
1 AACAACAAAATAGTGAAA--AC
* *
37279485 AACAA-ACAAT-GAGAAAAC
1 AACAACAAAATAGTGAAAAC
*
37279503 AACAGCAAAATAGTGGAAAAC
1 AACAACAAAATAGT-GAAAAC
37279524 AA
1 AA
37279526 TAGTTTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
18 6 0.18
19 4 0.12
20 6 0.18
21 12 0.36
22 5 0.15
ACGTcount: A:0.62, C:0.14, G:0.14, T:0.10
Consensus pattern (20 bp):
AACAACAAAATAGTGAAAAC
Found at i:37279968 original size:24 final size:24
Alignment explanation
Indices: 37279941--37279997 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
37279931 ATACATTTAA
*
37279941 ATAATATTTAAATTTGTTAATATT
1 ATAATATTTAAATTAGTTAATATT
37279965 ATAATATTTAAATTAGTTAATATT
1 ATAATATTTAAATTAGTTAATATT
*
37279989 ATTATATTT
1 ATAATATTT
37279998 TAGTAAGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (24 bp):
ATAATATTTAAATTAGTTAATATT
Found at i:37281429 original size:23 final size:23
Alignment explanation
Indices: 37281403--37281446 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
37281393 GACTAGATAT
* *
37281403 AAAAACATTGAAGACTAAATTTG
1 AAAAAAATTGAACACTAAATTTG
*
37281426 AAAAAAATTTAACACTAAATT
1 AAAAAAATTGAACACTAAATT
37281447 GAATAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.27
Consensus pattern (23 bp):
AAAAAAATTGAACACTAAATTTG
Found at i:37285527 original size:16 final size:16
Alignment explanation
Indices: 37285478--37285530 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
37285468 AAAAATTATG
*
37285478 TTTTCCATCATTCTAA
1 TTTTCCATCCTTCTAA
*
37285494 TTTTCTATCCCTT-TAA
1 TTTTCCAT-CCTTCTAA
*
37285510 TTTTCCATCCTTCCAA
1 TTTTCCATCCTTCTAA
37285526 TTTTC
1 TTTTC
37285531 TTTCCACTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 4 0.13
16 24 0.77
17 3 0.10
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTCCATCCTTCTAA
Found at i:37287199 original size:17 final size:17
Alignment explanation
Indices: 37287177--37287213 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
37287167 GCACATGGCC
37287177 GTGTGG-ACACAGCCCAT
1 GTGTGGCACAC-GCCCAT
37287194 GTGTGGCACACGCCCAT
1 GTGTGGCACACGCCCAT
37287211 GTG
1 GTG
37287214 GCCATTCGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (17 bp):
GTGTGGCACACGCCCAT
Found at i:37289405 original size:17 final size:19
Alignment explanation
Indices: 37289373--37289414 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
37289363 TATTCTTTAG
37289373 AATTTTTTTAATAAATTAT-
1 AATTTTTTTAATAAA-TATC
37289392 AATTTTTTT-A-AAATATC
1 AATTTTTTTAATAAATATC
37289409 AATTTT
1 AATTTT
37289415 AGAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.14
17 9 0.41
18 1 0.05
19 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
AATTTTTTTAATAAATATC
Found at i:37293045 original size:39 final size:39
Alignment explanation
Indices: 37293000--37293077 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
37292990 ATTTATTTGT
*
37293000 TTTTCCCCAAAAATTATGAGCCACTAAATCTATCTAGCC
1 TTTTCCCCAAAAATCATGAGCCACTAAATCTATCTAGCC
37293039 TTTTCCCCAAAAATCATGAGCCACTAAATCTATCTAGCC
1 TTTTCCCCAAAAATCATGAGCCACTAAATCTATCTAGCC
37293078 GAAGGTTGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.29
Consensus pattern (39 bp):
TTTTCCCCAAAAATCATGAGCCACTAAATCTATCTAGCC
Found at i:37296730 original size:20 final size:20
Alignment explanation
Indices: 37296691--37296730 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37296681 ATTTATTTTC
* *
37296691 ATTTATTTTTAATTATCTTT
1 ATTTATTTGTAATTACCTTT
*
37296711 ATTTATTTGTATTTACCTTT
1 ATTTATTTGTAATTACCTTT
37296731 TAGAATTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (20 bp):
ATTTATTTGTAATTACCTTT
Found at i:37300428 original size:22 final size:20
Alignment explanation
Indices: 37300403--37300445 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
37300393 AAACACAATA
37300403 ACAAGTCAATATTCTAATATTC
1 ACAA-TCAA-ATTCTAATATTC
* *
37300425 ACAATCAAATTTTATTATTC
1 ACAATCAAATTCTAATATTC
37300445 A
1 A
37300446 TTCCTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 4 0.21
22 4 0.21
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
ACAATCAAATTCTAATATTC
Found at i:37301524 original size:18 final size:18
Alignment explanation
Indices: 37301498--37301535 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37301488 ATTTTTATAC
*
37301498 ATATTTTTTAATCTTATT
1 ATATATTTTAATCTTATT
*
37301516 ATATATTTTAATTTTATT
1 ATATATTTTAATCTTATT
37301534 AT
1 AT
37301536 GCACGCATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
ATATATTTTAATCTTATT
Found at i:37306919 original size:13 final size:13
Alignment explanation
Indices: 37306902--37306937 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
37306892 CTTTTTAATA
37306902 TTAAAAATT-TTT
1 TTAAAAATTATTT
37306914 TATAAAAATTATTT
1 T-TAAAAATTATTT
37306928 TTAAAAATTA
1 TTAAAAATTA
37306938 AAAATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 1 0.05
13 17 0.77
14 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAAAAATTATTT
Found at i:37306952 original size:19 final size:20
Alignment explanation
Indices: 37306916--37306954 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
37306906 AAATTTTTTA
*
37306916 TAAAAATTATTTTTAAAAAT
1 TAAAAATTATTTTAAAAAAT
37306936 TAAAAATTA-TTTAAAAAAT
1 TAAAAATTATTTTAAAAAAT
37306955 ATTTTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAAATTATTTTAAAAAAT
Found at i:37306953 original size:20 final size:20
Alignment explanation
Indices: 37306916--37306953 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37306906 AAATTTTTTA
**
37306916 TAAAAATTATTTTTAAAAAT
1 TAAAAATTATTTAAAAAAAT
37306936 TAAAAATTATTTAAAAAA
1 TAAAAATTATTTAAAAAA
37306954 TATTTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAAATTATTTAAAAAAAT
Found at i:37306958 original size:31 final size:33
Alignment explanation
Indices: 37306893--37306974 Score: 107
Period size: 31 Copynumber: 2.6 Consensus size: 33
37306883 TTAATTTAAC
* *
37306893 TTTTT-AATATTAAAAATTTTTTATAAAAATTA
1 TTTTTAAAAATTAAAAATTATTTATAAAAATTA
37306925 TTTTTAAAAATTAAAAATTATTTA-AAAAA-TA
1 TTTTTAAAAATTAAAAATTATTTATAAAAATTA
* *
37306956 TTTTTAATAATTTAAAATT
1 TTTTTAAAAATTAAAAATT
37306975 GTAAAAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
31 19 0.42
32 10 0.22
33 16 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (33 bp):
TTTTTAAAAATTAAAAATTATTTATAAAAATTA
Found at i:37307459 original size:12 final size:12
Alignment explanation
Indices: 37307442--37307475 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
37307432 CGACCAGCCC
37307442 ATATTAATTTTT
1 ATATTAATTTTT
*
37307454 ATATTATTTTTT
1 ATATTAATTTTT
37307466 ATA-TAATTTT
1 ATATTAATTTT
37307476 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:37307633 original size:30 final size:30
Alignment explanation
Indices: 37307597--37307654 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37307587 TAATTTAACA
*
37307597 AGCAAATGCCTCTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAAAAAAATT
* *
37307627 AGCAAATGTCTTTAAAATAATAAAAAAA
1 AGCAAATGCCTCTAAAATAATAAAAAAA
37307655 ATTAACAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.24
Consensus pattern (30 bp):
AGCAAATGCCTCTAAAATAATAAAAAAATT
Found at i:37315837 original size:29 final size:29
Alignment explanation
Indices: 37315795--37315853 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
37315785 ACTAATGCAA
*
37315795 AGAATGAACTATGTTATGTATGTTTTCCT
1 AGAATGAACTATGTTATGTATATTTTCCT
37315824 AGAATGAACTATGTTATGTATATTTTCCT
1 AGAATGAACTATGTTATGTATATTTTCCT
37315853 A
1 A
37315854 CTAACTCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (29 bp):
AGAATGAACTATGTTATGTATATTTTCCT
Found at i:37321406 original size:38 final size:36
Alignment explanation
Indices: 37321364--37321434 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 36
37321354 TTTCACAATG
*
37321364 AGTTTT-AAATCCATCATTCTTTTTCATTCAATAATTTA
1 AGTTTTGAAAT-CATCA-TCATTTT-ATTCAATAATTTA
37321402 AGTTTTGAAATCATCATCATTTTATTCAATAAT
1 AGTTTTGAAATCATCATCATTTTATTCAATAAT
37321435 CTACATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 10 0.32
37 6 0.19
38 11 0.35
39 4 0.13
ACGTcount: A:0.34, C:0.14, G:0.04, T:0.48
Consensus pattern (36 bp):
AGTTTTGAAATCATCATCATTTTATTCAATAATTTA
Found at i:37327100 original size:15 final size:16
Alignment explanation
Indices: 37327082--37327128 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
37327072 TGATAATGTA
37327082 AATAAC-AATAATACT
1 AATAACGAATAATACT
* *
37327097 AAT-ACTAATAATAAT
1 AATAACGAATAATACT
37327112 AATAACGAATAAT-CT
1 AATAACGAATAATACT
37327127 AA
1 AA
37327129 ATTTTCGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.07
15 17 0.63
16 8 0.30
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.28
Consensus pattern (16 bp):
AATAACGAATAATACT
Found at i:37328816 original size:29 final size:31
Alignment explanation
Indices: 37328765--37328856 Score: 111
Period size: 29 Copynumber: 3.1 Consensus size: 31
37328755 CTTTTTAAAC
* *
37328765 ATTATATATATATTTTT-ATATTATGTCTAT
1 ATTATGTATATATTTTTAATATTATGTATAT
*
37328795 ATT-T-TATGTATTTTTAATATTATGTATAT
1 ATTATGTATATATTTTTAATATTATGTATAT
* *
37328824 ATTATGTATATACTTTTAATATCAT-TATAT
1 ATTATGTATATATTTTTAATATTATGTATAT
37328854 ATT
1 ATT
37328857 TATTTTTAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
28 10 0.19
29 16 0.30
30 12 0.22
31 16 0.30
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (31 bp):
ATTATGTATATATTTTTAATATTATGTATAT
Found at i:37328822 original size:27 final size:27
Alignment explanation
Indices: 37328767--37328832 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
37328757 TTTTAAACAT
*
37328767 TATA-TATATATTTTTATATTATGTCTA
1 TATATTATGTATTTTTATATTATG-CTA
*
37328794 TATTTTATGTATTTTTAATATTATG-TA
1 TATATTATGTATTTTT-ATATTATGCTA
37328821 TATATTATGTAT
1 TATATTATGTAT
37328833 ATACTTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 16 0.47
28 10 0.29
29 8 0.24
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.61
Consensus pattern (27 bp):
TATATTATGTATTTTTATATTATGCTA
Found at i:37328827 original size:11 final size:11
Alignment explanation
Indices: 37328765--37328835 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
37328755 CTTTTTAAAC
*
37328765 ATTATATATAT
1 ATTATGTATAT
37328776 ATT-T-T-TAT
1 ATTATGTATAT
*
37328784 ATTATGTCTAT
1 ATTATGTATAT
*
37328795 ATT-T-TATGT
1 ATTATGTATAT
*
37328804 ATT-TTTA-AT
1 ATTATGTATAT
37328813 ATTATGTATAT
1 ATTATGTATAT
37328824 ATTATGTATAT
1 ATTATGTATAT
37328835 A
1 A
37328836 CTTTTAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
8 6 0.12
9 13 0.26
10 8 0.16
11 23 0.46
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (11 bp):
ATTATGTATAT
Found at i:37328863 original size:23 final size:22
Alignment explanation
Indices: 37328820--37328870 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
37328810 AATATTATGT
*
37328820 ATATATTATGTATATACTTTTA
1 ATATATTATATATATACTTTTA
* *
37328842 ATATCATTATATATTTATTTTTA
1 ATAT-ATTATATATATACTTTTA
37328865 ATATAT
1 ATATAT
37328871 ACGTATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (22 bp):
ATATATTATATATATACTTTTA
Found at i:37329285 original size:13 final size:13
Alignment explanation
Indices: 37329267--37329291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37329257 ATTATTATTA
37329267 TATATATTTCTTT
1 TATATATTTCTTT
37329280 TATATATTTCTT
1 TATATATTTCTT
37329292 ATTACTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATATTTCTTT
Found at i:37333184 original size:9 final size:9
Alignment explanation
Indices: 37333168--37333244 Score: 120
Period size: 9 Copynumber: 8.7 Consensus size: 9
37333158 ATCAACGCTT
37333168 TTGCATTCA
1 TTGCATTCA
*
37333177 TCGCATTCA
1 TTGCATTCA
37333186 TTGCATTCA
1 TTGCATTCA
37333195 TTGCATTCA
1 TTGCATTCA
*
37333204 TCGCATTCA
1 TTGCATTCA
*
37333213 TCGCATTCA
1 TTGCATTCA
37333222 TTGCATTCA
1 TTGCATTCA
37333231 TTGCATTCA
1 TTGCATTCA
37333240 -TGCAT
1 TTGCAT
37333245 CAGCATTGCA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
8 5 0.08
9 59 0.92
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (9 bp):
TTGCATTCA
Found at i:37341339 original size:43 final size:43
Alignment explanation
Indices: 37341275--37341662 Score: 220
Period size: 43 Copynumber: 8.9 Consensus size: 43
37341265 AGAATCAGTG
* * *
37341275 AATTCACCAGACCTTAACCCCCTAAGCAGTAGGGTAACATGTTA
1 AATTCA-CAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGTTA
*
37341319 AATTCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGTTG
1 AATTCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGTTA
* * * *
37341362 AATTCATAGATCTCAACCCCCTAAGCAGTAGGGAAATAGATTGA
1 AATTCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGTT-A
* * ** * * *
37341406 AGATGAT-A-AG-CCTTAACCCTTTATGCAGTAAGGTAACAGGCTAAA
1 A-AT--TCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGG-T-TA
* * * * * *
37341451 AATT-ACAGATCTTATCACCCTAAGCAGTAGGGAAACAGATCGA
1 AATTCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGT-TA
* * * * * *
37341494 AGA-TGA-AGAACCTTAAACCCCTAAGTAGTAGGGTAACAGGTTG
1 A-ATTCACAG-ATCTCAACCCCCTAAGCAGTAGGGTAACAGGTTA
* * * * *
37341537 AATTTACAGATCTCACCCCCCTAAGCAGTAGGGAAACAGATCGA
1 AATTCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGT-TA
* * *
37341581 AGATGAT-A-AG-CCTTAA-CCCCTAAGCAGTAGGGTAACAGGTTG
1 A-AT--TCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGTTA
* * * *
37341623 AATTTATAGATCTTAACCCCCCTAAGCAGTAGGGAAACAG
1 AATTCACAGATCTCAA-CCCCCTAAGCAGTAGGGTAACAG
37341663 ATCAGGAGTG
Statistics
Matches: 264, Mismatches: 58, Indels: 44
0.72 0.16 0.12
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 4 0.02
42 9 0.03
43 129 0.49
44 105 0.40
45 11 0.04
46 2 0.01
47 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (43 bp):
AATTCACAGATCTCAACCCCCTAAGCAGTAGGGTAACAGGTTA
Found at i:37341435 original size:87 final size:86
Alignment explanation
Indices: 37341336--37341707 Score: 469
Period size: 87 Copynumber: 4.3 Consensus size: 86
37341326 AGATCTCAAC
* * *
37341336 CCCCTAAGCAGTAGGGTAACAGGTTGAATTCATAGATCTCAACCCCCTAAGCAGTAGGGAAATAG
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAG
*
37341401 ATTGAAGATGATAAGCCTTAA
66 ATCGAAGATGATAAGCCTTAA
* * * ** * * * *
37341422 CCCTTTATGCAGTAAGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGCAGTAGGGAAAC
1 CCC-CTAAGCAGTAGGGTAACAGG-TTGAATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAAC
*
37341487 AGATCGAAGATGA-AGAACCTTAAA
64 AGATCGAAGATGATA-AGCCTT-AA
* *
37341511 CCCCTAAGTAGTAGGGTAACAGGTTGAATTTACAGATCTCACCCCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAG
37341576 ATCGAAGATGATAAGCCTTAA
66 ATCGAAGATGATAAGCCTTAA
* *
37341597 CCCCTAAGCAGTAGGGTAACAGGTTGAATTTATAGATCTTAACCCCCCTAAGCAGTAGGGAAACA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTCAA-CCCCCTAAGCAGTAGGGAAACA
* *
37341662 GATC-AGGAGTGATGAGCCTTAAA
65 GATCGAAGA-TGATAAGCCTT-AA
* *
37341685 CCCCTAAGCAATAGGGTCACAGG
1 CCCCTAAGCAGTAGGGTAACAGG
37341708 CTAGAAATTA
Statistics
Matches: 245, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
86 46 0.19
87 106 0.43
88 88 0.36
89 5 0.02
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (86 bp):
CCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAG
ATCGAAGATGATAAGCCTTAA
Found at i:37341516 original size:44 final size:45
Alignment explanation
Indices: 37341468--37341700 Score: 187
Period size: 44 Copynumber: 5.3 Consensus size: 45
37341458 GATCTTATCA
37341468 CCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAACCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAACCTTAAAC
* * * * * * * * * **
37341512 CCCTAAGTAGTAGGGTAACAGGTTGAA-TTTACAG-ATCTCACCC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAACCTTAAAC
*
37341555 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATA-AGCCTT-AAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAACCTTAAAC
* * * * * * *
37341598 CCCTAAGCAGTAGGGTAACAGGTTGAA-TTTATAG-ATCTTAACCC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAACCTTAA-AC
* *
37341642 CCCTAAGCAGTAGGGAAACAGATC-AGGAGTGAT-GAGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGA-TGATAGAACCTTAAAC
*
37341686 CCCTAAGCAATAGGG
1 CCCTAAGCAGTAGGG
37341701 TCACAGGCTA
Statistics
Matches: 140, Mismatches: 40, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
42 7 0.05
43 57 0.41
44 68 0.49
45 8 0.06
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (45 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAACCTTAAAC
Found at i:37343487 original size:30 final size:30
Alignment explanation
Indices: 37343437--37343527 Score: 87
Period size: 30 Copynumber: 3.0 Consensus size: 30
37343427 TTTTTAAACA
* *
37343437 TTATATATATTTTTATATTATGTCTATATT
1 TTATATATATTTTTAGATTATGTATATATT
* *
37343467 TTATGTATTTTTTTAGATTATGTATATATT
1 TTATATATATTTTTAGATTATGTATATATT
* * *
37343497 ATGTATATACTTTTA-ATATCAT-TATATATT
1 TTATATATATTTTTAGAT-T-ATGTATATATT
37343527 T
1 T
37343528 ATTTTTAATA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 2 0.04
30 45 0.92
31 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.60
Consensus pattern (30 bp):
TTATATATATTTTTAGATTATGTATATATT
Found at i:37343520 original size:23 final size:22
Alignment explanation
Indices: 37343490--37343539 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
37343480 TAGATTATGT
*
37343490 ATATATTATGTATATACTTTTA
1 ATATATTATATATATACTTTTA
* *
37343512 ATATCATTATATATTTATTTTTA
1 ATAT-ATTATATATATACTTTTA
37343535 ATATA
1 ATATA
37343540 AACGTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
ATATATTATATATATACTTTTA
Found at i:37343954 original size:13 final size:13
Alignment explanation
Indices: 37343936--37343960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37343926 TATTATTATA
37343936 TATATATTTCTTT
1 TATATATTTCTTT
37343949 TATATATTTCTT
1 TATATATTTCTT
37343961 ATTACTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATATTTCTTT
Found at i:37345039 original size:3 final size:3
Alignment explanation
Indices: 37345033--37345065 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37345023 TGGTTACGAC
37345033 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37345066 TGAGGTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37346073 original size:10 final size:10
Alignment explanation
Indices: 37346058--37346089 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
37346048 TGGGCTGCTA
*
37346058 TTTGTTTTGT
1 TTTGTTTTAT
37346068 TTTGTTTTAT
1 TTTGTTTTAT
37346078 TTTGTTTTAT
1 TTTGTTTTAT
37346088 TT
1 TT
37346090 AATATTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.06, C:0.00, G:0.12, T:0.81
Consensus pattern (10 bp):
TTTGTTTTAT
Found at i:37351405 original size:13 final size:13
Alignment explanation
Indices: 37351387--37351411 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37351377 GAGTGAAAAT
37351387 ATCATTAATTTTC
1 ATCATTAATTTTC
37351400 ATCATTAATTTT
1 ATCATTAATTTT
37351412 TTAAAATGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (13 bp):
ATCATTAATTTTC
Found at i:37351920 original size:22 final size:23
Alignment explanation
Indices: 37351862--37351921 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
37351852 AGTGTTTGGG
37351862 AAATATTAAA-AT-AAATATATA
1 AAATATTAAATATAAAATATATA
* *
37351883 AAAAAGGT-AATGATAAAATAT-TA
1 AAATA-TTAAAT-ATAAAATATATA
37351906 AAATATTAAATATAAA
1 AAATATTAAATATAAA
37351922 TTACACTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 9
0.70 0.09 0.21
Matches are distributed among these distances:
21 6 0.20
22 7 0.23
23 11 0.37
24 6 0.20
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (23 bp):
AAATATTAAATATAAAATATATA
Found at i:37359966 original size:43 final size:42
Alignment explanation
Indices: 37359896--37360077 Score: 165
Period size: 43 Copynumber: 4.3 Consensus size: 42
37359886 TTATGTGGAA
* * * * * *
37359896 AAACGCCGTTATAGAACATTACATTTAGCGACGCTTTTTCCAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGACGC-TTTCCCAC
*
37359939 AAACGCCGCTAAAGAACGTGACCTTTAGCGACGCTTTCCCCAT
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGACGCTTT-CCCAC
*
37359982 AAACGCCACTAAAGAACGTGACCTTTAGCTG-CGCTTTCCCAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGC-GACGCTTTCCCAC
** * *
37360024 AAACGTTGCTAAGAGAA--TGACCTTTAGC-AGCGCTTTTCTCAA
1 AAACGCCGCTAA-AGAACGTGACCTTTAGCGA-CGC-TTTCCCAC
*
37360066 AAACGCCACTAA
1 AAACGCCGCTAA
37360078 GGTTATGTTC
Statistics
Matches: 116, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
41 14 0.12
42 31 0.27
43 70 0.60
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACGTGACCTTTAGCGACGCTTTCCCAC
Found at i:37360563 original size:66 final size:65
Alignment explanation
Indices: 37360435--37360568 Score: 153
Period size: 66 Copynumber: 2.0 Consensus size: 65
37360425 ATTCTGAAGC
* * ***
37360435 TGTAGCTGGAGTTCGTCATATTTTCTGCTTGCCTCTGCTTCCCCCGCTGCTACCTTTGCTTTAAG
1 TGTAGCTGGAGTTCGTCATATTTTCT-CTTGCCTCTACTTCCCCCGATGCTACCTCCACTTTAAG
37360500 T
65 T
* * * *
37360501 TGTAGCTGGAGTTCTTCATATTTTCT-TTGAGCCTCTACTTCTCTCGATGCTGCCTCCACTTTAA
1 TGTAGCTGGAGTTCGTCATATTTTCTCTT--GCCTCTACTTCCCCCGATGCTACCTCCACTTTAA
37360565 GT
64 GT
37360567 TG
1 TG
37360569 AGCAATTTGC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
64 2 0.04
66 55 0.96
ACGTcount: A:0.13, C:0.27, G:0.19, T:0.42
Consensus pattern (65 bp):
TGTAGCTGGAGTTCGTCATATTTTCTCTTGCCTCTACTTCCCCCGATGCTACCTCCACTTTAAGT
Found at i:37362350 original size:5 final size:5
Alignment explanation
Indices: 37362340--37362386 Score: 85
Period size: 5 Copynumber: 9.2 Consensus size: 5
37362330 TTAAGTATAT
37362340 TATTA TATTA TATTA TATTA TATTTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TA-TTA TATTA TATTA TATTA TATTA T
37362387 GTATAAAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 36 0.88
6 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:37362368 original size:21 final size:21
Alignment explanation
Indices: 37362342--37362384 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
37362332 AAGTATATTA
37362342 TTATATTATATTATATTATAT
1 TTATATTATATTATATTATAT
37362363 TTATATTATATTATATTATAT
1 TTATATTATATTATATTATAT
37362384 T
1 T
37362385 ATGTATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATATTATATTATATTATAT
Found at i:37366334 original size:46 final size:46
Alignment explanation
Indices: 37366274--37366591 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
37366264 TTTGACATGA
* * * ** * *
37366274 TGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
37366320 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37366366 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37366412 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** *
37366458 TGCCATGGTATCTTTCAACCATAATCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
37366504 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
37366550 TGCCATGGTATC-TT-AACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
37366592 AGAGCACACT
Statistics
Matches: 249, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
44 27 0.11
45 6 0.02
46 216 0.87
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:37368578 original size:14 final size:14
Alignment explanation
Indices: 37368542--37368587 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
37368532 GCTTTGTTTC
*
37368542 TTTATTTCTCTCC-T
1 TTTATTTC-CCCCTT
37368556 TTT-TTTCCCCCTT
1 TTTATTTCCCCCTT
*
37368569 TTTATTTCCCCTTT
1 TTTATTTCCCCCTT
37368583 TTTAT
1 TTTAT
37368588 ATATACACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 3 0.11
13 8 0.29
14 17 0.61
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTATTTCCCCCTT
Found at i:37370340 original size:30 final size:30
Alignment explanation
Indices: 37370306--37370368 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
37370296 ACTTAAGAAG
37370306 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
37370336 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
37370366 CAA
1 CAA
37370369 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:37373662 original size:5 final size:5
Alignment explanation
Indices: 37373652--37373734 Score: 166
Period size: 5 Copynumber: 16.6 Consensus size: 5
37373642 TTAAGTATAT
37373652 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
37373702 TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT
37373735 ATAAAAGAAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 78 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:37374383 original size:12 final size:12
Alignment explanation
Indices: 37374366--37374390 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37374356 GCCGACTACT
37374366 GTTACTGTTACC
1 GTTACTGTTACC
37374378 GTTACTGTTACC
1 GTTACTGTTACC
37374390 G
1 G
37374391 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:37374423 original size:45 final size:45
Alignment explanation
Indices: 37374368--37374474 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
37374358 CGACTACTGT
*
37374368 TACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAA
* * * * * *
37374413 TACTATTACCGTTACTATTATAGATTCAGTATTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
*
37374458 TACTGTTACTGTTACTG
1 TACTGTTACCGTTACTG
37374475 CTACTGCCAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:37388510 original size:19 final size:20
Alignment explanation
Indices: 37388473--37388510 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37388463 ATATGATTAA
37388473 TAAAATTTTCATGTGAAATT
1 TAAAATTTTCATGTGAAATT
37388493 TAAACATTTT-AT-TGAAAT
1 TAAA-ATTTTCATGTGAAAT
37388511 AATATAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 6 0.35
21 5 0.29
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (20 bp):
TAAAATTTTCATGTGAAATT
Found at i:37391985 original size:22 final size:22
Alignment explanation
Indices: 37391957--37392006 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
37391947 AACTATTGTA
37391957 CATATTAGATGAATTCAATAAT
1 CATATTAGATGAATTCAATAAT
*
37391979 CATATTAGATGAATTCAATAGT
1 CATATTAGATGAATTCAATAAT
37392001 CATATT
1 CATATT
37392007 TGATTCTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (22 bp):
CATATTAGATGAATTCAATAAT
Found at i:37394619 original size:15 final size:15
Alignment explanation
Indices: 37394599--37394628 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37394589 TTCATTCTTT
37394599 TATGTTTTCTTTGTA
1 TATGTTTTCTTTGTA
37394614 TATGTTTTCTTTGTA
1 TATGTTTTCTTTGTA
37394629 GTAAGTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67
Consensus pattern (15 bp):
TATGTTTTCTTTGTA
Found at i:37394637 original size:15 final size:15
Alignment explanation
Indices: 37394602--37394636 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
37394592 ATTCTTTTAT
*
37394602 GTTTTCTTTGTATAT
1 GTTTTCTTTGTATAA
37394617 GTTTTCTTTGTAGTAA
1 GTTTTCTTTGTA-TAA
37394633 GTTT
1 GTTT
37394637 CATTGTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.14, C:0.06, G:0.17, T:0.63
Consensus pattern (15 bp):
GTTTTCTTTGTATAA
Found at i:37394969 original size:49 final size:51
Alignment explanation
Indices: 37394803--37394979 Score: 191
Period size: 52 Copynumber: 3.5 Consensus size: 51
37394793 GGATACTCGA
* * ** *
37394803 TGGCCTGCACATAGTACCACCCTTGT-AGTTAAAGCTA-CATTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGA-CCAAAACTATC-TTCTTCACAAAG
*
37394854 TGGCCTTCACATAGTACTACACTTGTGACCAAAACTATCTTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGACCAAAACTATC-TTCTTCACAAAG
** * * *
37394906 TGGCCTTCTTATAGTACCATACTTGTGACC-AAGCTATC-TCTTCTCAAAG
1 TGGCCTTCACATAGTACCACACTTGTGACCAAAACTATCTTCTTCACAAAG
*
37394955 TGGCCTTCACATAGTACCACGCTTG
1 TGGCCTTCACATAGTACCACACTTG
37394980 AGTCACTAGT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 31 0.29
51 36 0.34
52 40 0.37
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGACCAAAACTATCTTCTTCACAAAG
Found at i:37399258 original size:27 final size:27
Alignment explanation
Indices: 37399210--37399367 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
37399200 GCGAGGCTGC
* *
37399210 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
37399237 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
37399263 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
37399290 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
37399317 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
37399344 CAGATAATTGTGGCATAGCCACCA
1 CAGAT-ATTGTGGCAGAGCCACCA
37399368 TGACGCTTCC
Statistics
Matches: 116, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:37399303 original size:54 final size:54
Alignment explanation
Indices: 37399228--37399367 Score: 246
Period size: 54 Copynumber: 2.6 Consensus size: 54
37399218 GTGACGAAGT
*
37399228 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
37399282 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
37399336 CACCAGATCAGATAATTGTGGCATAGCCACCA
1 CACCAGATCAGATAATTGTGGCATAGCCACCA
37399368 TGACGCTTCC
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:37400971 original size:26 final size:26
Alignment explanation
Indices: 37400941--37401048 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
37400931 TGAAATTCCC
37400941 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
37400967 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
*
37400993 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37401019 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37401045 ATCA
1 ATCA
37401049 ATTTGTGTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37408474 original size:32 final size:34
Alignment explanation
Indices: 37408438--37408502 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
37408428 TAACAGTGGT
*
37408438 ACTGGACCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAATAA
* **
37408470 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAATA
37408503 TGACCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.33
33 5 0.19
34 13 0.48
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (34 bp):
ACTGGACCAGAGCCCCTTATTCAGATAACAATAA
Found at i:37408839 original size:26 final size:26
Alignment explanation
Indices: 37408810--37408862 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
37408800 TCAAACATGC
37408810 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
37408836 ATTTTGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
37408862 A
1 A
37408863 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:37410342 original size:26 final size:26
Alignment explanation
Indices: 37410313--37410387 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
37410303 TCAATCATGG
*
37410313 AACATTTACCTAACCTATTATCATAA
1 AACATTTACCTAACCCATTATCATAA
**
37410339 AACATTTACCTAACCCATTATCATGG
1 AACATTTACCTAACCCATTATCATAA
37410365 AACATTTACCTAACCCATTATCA
1 AACATTTACCTAACCCATTATCA
37410388 ATTTGTATCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.39, C:0.27, G:0.03, T:0.32
Consensus pattern (26 bp):
AACATTTACCTAACCCATTATCATAA
Found at i:37411205 original size:22 final size:23
Alignment explanation
Indices: 37411168--37411213 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
37411158 TACACATGCA
*
37411168 TTTTTCATATTAATA-TATATATG
1 TTTTTAATATTAATATTAT-TATG
37411191 TTTTTAATATT-ATATTATTATG
1 TTTTTAATATTAATATTATTATG
37411213 T
1 T
37411214 ATATGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTAATATTATTATG
Found at i:37411232 original size:30 final size:28
Alignment explanation
Indices: 37411174--37411230 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
37411164 TGCATTTTTC
37411174 ATATTAATATATATATGTTTTTAATATT
1 ATATTAATATATATATGTTTTTAATATT
* *
37411202 ATATTATTATGTATATG-TTTTAATATT
1 ATATTAATATATATATGTTTTTAATATT
37411229 AT
1 AT
37411231 TAGCTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (28 bp):
ATATTAATATATATATGTTTTTAATATT
Found at i:37411412 original size:21 final size:21
Alignment explanation
Indices: 37411370--37411412 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37411360 CTAATATAAA
* *
37411370 TATATATACATCATATAGGTT
1 TATATACACATCATACAGGTT
* *
37411391 TATATACATATCATACATGTT
1 TATATACACATCATACAGGTT
37411412 T
1 T
37411413 CATTATTTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (21 bp):
TATATACACATCATACAGGTT
Found at i:37419723 original size:11 final size:11
Alignment explanation
Indices: 37419709--37419753 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
37419699 AGATAAATAT
37419709 TATTTTATTAA
1 TATTTTATTAA
*
37419720 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
37419733 TATTTTATTAT
1 TATTTTATTAA
37419744 TATTTTATTA
1 TATTTTATTA
37419754 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:37421941 original size:38 final size:38
Alignment explanation
Indices: 37421892--37421967 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
37421882 TGATATGAAA
37421892 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
37421930 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
37421968 ATATGAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (38 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:37422002 original size:46 final size:46
Alignment explanation
Indices: 37421930--37422146 Score: 265
Period size: 46 Copynumber: 4.7 Consensus size: 46
37421920 TGGCAACCTG
* *
37421930 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* * * * *
37421976 TGTGTAAGACCATGGTTGAAATATACCATGACAACTTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* *
37422022 TGTGTAAGACCATGGTTGAAAGATAACATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* ** *
37422068 AGAATAAGACCATGGTTAAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * * *
37422114 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
37422147 TCACGTCAAA
Statistics
Matches: 148, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 1 0.01
46 147 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:37422124 original size:138 final size:130
Alignment explanation
Indices: 37421882--37422134 Score: 337
Period size: 138 Copynumber: 1.9 Consensus size: 130
37421872 GTGTGCTCTC
* *
37421882 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAACCTGTGAGTAAGACCATGGTT
* * * * *
37421947 GAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAATATACCATGACAACT
66 AAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAATATACCATGACAACT
* *
37422012 TGATATGAGATGTGTAAGACCATGGTTGAAAGATAACATGGCAACGTGACATGAAAAGAATAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAACCTG---TG---AG--TAAGA
37422077 CCATGGTTAAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAA
58 CCATGGTTAAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAA
37422135 GACACTATGG
Statistics
Matches: 105, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
130 45 0.43
133 2 0.02
136 1 0.01
137 1 0.01
138 56 0.53
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (130 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAACCTGTGAGTAAGACCATGGTT
AAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAATATACCATGACAACT
Found at i:37428355 original size:14 final size:14
Alignment explanation
Indices: 37428325--37428358 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
37428315 GCTGACGTAA
*
37428325 TTTCAATTTCTATT
1 TTTCAATTTCTACT
*
37428339 TTTCAATTTCTGCT
1 TTTCAATTTCTACT
37428353 TTTCAA
1 TTTCAA
37428359 AAAAATCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:37428378 original size:89 final size:88
Alignment explanation
Indices: 37428158--37428482 Score: 361
Period size: 89 Copynumber: 3.6 Consensus size: 88
37428148 GCTGAGGTAA
* * * *
37428158 TTTCAATTTCTGTTTGTCAAAAAAAAATCAACTCATATTGCAAGAGAAGAGTTGAGCCTTGGTTC
1 TTTCAATTTCTGTTT-TC--AAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG--G
**
37428223 ACATATTGAGGT-ATTTCTAATTTCTGTT
61 ACATGCTGAGGTAATTTC-AATTTCTGTT
* *
37428251 CTTTCAATTTATG-TTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGGCAT
1 -TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACAT
* *
37428315 GCTGACGTAATTTCAATTTCTATT
65 GCTGAGGTAATTTCAATTTCTGTT
* * *
37428339 TTTCAATTTCTGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
1 TTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACAT
* * *
37428404 GCTGAGGTAATTTTAATTTATGTC
65 GCTGAGGTAATTTCAATTTCTGTT
* * * *
37428428 TTT-AATTTCTACTTTTC-CAAAAATCAACTCATATTTCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
37428483 TGACTCATAT
Statistics
Matches: 203, Mismatches: 24, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
87 46 0.23
88 29 0.14
89 74 0.36
90 39 0.19
92 2 0.01
93 2 0.01
94 11 0.05
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (88 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACATG
CTGAGGTAATTTCAATTTCTGTT
Found at i:37428547 original size:162 final size:148
Alignment explanation
Indices: 37428359--37428795 Score: 493
Period size: 162 Copynumber: 2.8 Consensus size: 148
37428349 TGCTTTTCAA
*
37428359 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACATGCTGAGGTAATTTT-AATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACATGCTGAGGT-ATTTTCAATT
* * * *
37428422 TATGTCTTTAATTTCTACTTTTCCAAAAATCAACTCATATTTCGAGAGGTGAGTTGAGCCTTGAC
64 TCTGTTTTTAATTTCT-GTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT---
* *
37428487 TCATATGTTGAGGTATTTTCAATTACTGTTTG
124 TCA-AT-TT-AGGT-TTTTCAATT--T-ATAG
* * * **
37428519 TCAAAAACCAACTCATATTGCTAGAGGTGAGTTGGGCCTCGGGTCACACACTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-CACATGCTGAGGTATTTTCAA
* * *
37428584 ATTCTGTTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTTTTA
62 TTTCTGTTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCA
*
37428649 ATTTATGTTTTTCAATTTATAG
127 ATTTAGGTTTTTCAATTTATAG
*
37428671 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAGTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACATGCTGAGGTATTTTCAATT
*
37428735 TCTGTTTTTCAAATTTCTGTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCT
64 TCTGTTTTT--AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
37428796 CAGGACACGC
Statistics
Matches: 243, Mismatches: 26, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
148 2 0.01
149 63 0.26
151 48 0.20
152 2 0.01
153 1 0.00
155 9 0.04
156 3 0.01
157 2 0.01
158 2 0.01
159 2 0.01
162 73 0.30
163 9 0.04
164 27 0.11
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (148 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACATGCTGAGGTATTTTCAATTTC
TGTTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTT
AGGTTTTTCAATTTATAG
Found at i:37428574 original size:75 final size:75
Alignment explanation
Indices: 37428445--37428592 Score: 181
Period size: 75 Copynumber: 2.0 Consensus size: 75
37428435 TCTACTTTTC
* * * * ***
37428445 CAAAAATCAACTCATATTTCGAGAGGTGAGTTGAGCCTTGACTCATATGTTGAGGTATTTTC-AA
1 CAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACACACTGAGGTATTTTCAAA
37428509 TTACTGTTTGT
66 TT-CTGTTTGT
* * **
37428520 CAAAAACCAACTCATATTGCTAGAGGTGAGTTGGGCCTCGGGTCACACACTGAGGTATTTTCAAA
1 CAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACACACTGAGGTATTTTCAAA
37428585 TTCTGTTT
66 TTCTGTTT
37428593 TTAATTTCTG
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
75 57 0.93
76 4 0.07
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (75 bp):
CAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACACACTGAGGTATTTTCAAA
TTCTGTTTGT
Found at i:37428745 original size:14 final size:15
Alignment explanation
Indices: 37428733--37428761 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37428723 GTATTTTCAG
37428733 TTTCTGTTTTTCAAA
1 TTTCTGTTTTTCAAA
37428748 TTTCTG-TTTTCAAA
1 TTTCTGTTTTTCAAA
37428762 AATCAACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (15 bp):
TTTCTGTTTTTCAAA
Found at i:37428921 original size:89 final size:87
Alignment explanation
Indices: 37428671--37428921 Score: 281
Period size: 89 Copynumber: 2.8 Consensus size: 87
37428661 CAATTTATAG
* *
37428671 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAGTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-ACTCACATGCTGAGGTATTTTCAATTT
* *
37428736 CTGTTTTTCAAATTTCTGTTTTCA
65 CTATTTTT-AAATTTCTCTTTTCA
* ** * * *
37428760 AAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCA-GGACACGCTAAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACTCACATGCTGAGGTATTTTCAATTTC
* * * *
37428824 TGTTTTTTTATTTTTTCTTTTCAAA
66 T-ATTTTTAAATTTCTCTTTTC--A
* *
37428849 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCAACTCACATGCTGAGG-AGTTTTTAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-ACTCACATGCTGAGGTA-TTTTCAATT
37428913 TCTATTTTT
64 TCTATTTTT
37428922 TTCAACTCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
87 31 0.23
88 5 0.04
89 72 0.54
90 7 0.05
91 19 0.14
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACTCACATGCTGAGGTATTTTCAATTTC
TATTTTTAAATTTCTCTTTTCA
Found at i:37431530 original size:21 final size:21
Alignment explanation
Indices: 37431488--37431530 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37431478 AATATAAATA
* *
37431488 TATATATACATCATATAGGTT
1 TATATACACATCATACAGGTT
* *
37431509 TATATACATATCATACATGTT
1 TATATACACATCATACAGGTT
37431530 T
1 T
37431531 CATTATTTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (21 bp):
TATATACACATCATACAGGTT
Found at i:37431594 original size:20 final size:21
Alignment explanation
Indices: 37431571--37431626 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
37431561 TTATTACTAT
37431571 TTTATGTATATATTTTT-ATC
1 TTTATGTATATATTTTTAATC
37431591 TTTAT-TACTATTATTTTTAATC
1 TTTATGTA-TA-TATTTTTAATC
*
37431613 -TTA-GTATATGTTTT
1 TTTATGTATATATTTT
37431627 ATATATGTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
19 7 0.23
20 9 0.29
21 12 0.39
22 3 0.10
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.64
Consensus pattern (21 bp):
TTTATGTATATATTTTTAATC
Found at i:37437343 original size:45 final size:45
Alignment explanation
Indices: 37437292--37437394 Score: 118
Period size: 46 Copynumber: 2.3 Consensus size: 45
37437282 GAGTCATGGT
* * *
37437292 CGGTAAGCTCTTTCGAGCTG-AATAGTAAGCTCTATTGAGCTAAAA
1 CGGTAAGCTCTTT-GAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
** *
37437337 CGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCCAATGAGCTGAAA
1 CGGTAAGCT-CTTTGAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
*
37437383 CGATAAGCTCTT
1 CGGTAAGCTCTT
37437395 AAGAGCTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
45 16 0.34
46 31 0.66
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
CGGTAAGCTCTTTGAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
Found at i:37437346 original size:23 final size:23
Alignment explanation
Indices: 37437316--37437402 Score: 95
Period size: 23 Copynumber: 3.8 Consensus size: 23
37437306 GAGCTGAATA
*
37437316 GTAAGCTCTATTGAGCTAAAACG
1 GTAAGCTCTAATGAGCTAAAACG
* * *
37437339 GTAAGCTCCAATGAGCTGAAACA
1 GTAAGCTCTAATGAGCTAAAACG
* *
37437362 GTAAGCTCCAATGAGCTGAAACG
1 GTAAGCTCTAATGAGCTAAAACG
*
37437385 ATAAGCTCTTAA-GAGCTA
1 GTAAGCTC-TAATGAGCTA
37437403 TGGTGAGTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
23 53 0.96
24 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTAAAACG
Found at i:37437368 original size:46 final size:45
Alignment explanation
Indices: 37437306--37437392 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
37437296 AAGCTCTTTC
* * * *
37437306 GAGCTGAATAGTAAGCTCTATTGAGCTAAAACGGTAAGCTCCAAT
1 GAGCTGAACAGTAAGCTCCAATGAGCTAAAACGATAAGCTCCAAT
*
37437351 GAGCTGAAACAGTAAGCTCCAATGAGCTGAAACGATAAGCTC
1 GAGCTG-AACAGTAAGCTCCAATGAGCTAAAACGATAAGCTC
37437393 TTAAGAGCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 6 0.17
46 30 0.83
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (45 bp):
GAGCTGAACAGTAAGCTCCAATGAGCTAAAACGATAAGCTCCAAT
Found at i:37440373 original size:27 final size:26
Alignment explanation
Indices: 37440330--37440383 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
37440320 AACATTTGAC
*
37440330 AAGTTTAGGTACAAAATTAGATAAAAA
1 AAGTTCAGGTACAAAATTAGA-AAAAA
*
37440357 AAGTTCAGGTATC-AAATTGGAAAAAA
1 AAGTTCAGGTA-CAAAATTAGAAAAAA
37440383 A
1 A
37440384 TGTTAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.25
27 17 0.71
28 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.24
Consensus pattern (26 bp):
AAGTTCAGGTACAAAATTAGAAAAAA
Found at i:37440453 original size:59 final size:59
Alignment explanation
Indices: 37440352--37440463 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 59
37440342 AAAATTAGAT
* * * * *
37440352 AAAAAAAGTTCAGGTATCAAATTGGAAAAAAATGTTAAATTTAGATACCAAATTGTGTA
1 AAAAAAAGTTCAGATATCAAATTAGAAAAAAATATCAAATTTAAATACCAAATTGTGTA
*
37440411 AAAAAATAGTTTAGATATCAAATTAGAAAAAAA-ATCAAATTTAAATACCAAAT
1 AAAAAA-AGTTCAGATATCAAATTAGAAAAAAATATCAAATTTAAATACCAAAT
37440464 GTTATGTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 23 0.50
60 23 0.50
ACGTcount: A:0.54, C:0.07, G:0.11, T:0.28
Consensus pattern (59 bp):
AAAAAAAGTTCAGATATCAAATTAGAAAAAAATATCAAATTTAAATACCAAATTGTGTA
Found at i:37445284 original size:33 final size:34
Alignment explanation
Indices: 37445247--37445312 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
37445237 CATTCAAGCA
*
37445247 ACAATAATACTGGGCCAGAG-CCCTT-TTCAGATT
1 ACAATAA-ACTAGGCCAGAGCCCCTTATTCAGATT
**
37445280 ACAATAAACTAGGCCTTAGCCCCTTATTCAGAT
1 ACAATAAACTAGGCCAGAGCCCCTTATTCAGAT
37445313 AACAGTATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 9 0.32
33 12 0.43
34 7 0.25
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (34 bp):
ACAATAAACTAGGCCAGAGCCCCTTATTCAGATT
Found at i:37445666 original size:25 final size:27
Alignment explanation
Indices: 37445629--37445681 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
37445619 TCAAACATGC
37445629 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
37445655 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
37445681 A
1 A
37445682 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:37447198 original size:26 final size:26
Alignment explanation
Indices: 37447168--37447223 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
37447158 TGAAATGCCC
37447168 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37447194 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37447220 ATCA
1 ATCA
37447224 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37450159 original size:35 final size:35
Alignment explanation
Indices: 37450093--37450159 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
37450083 AGCCCTTTGG
* * *
37450093 AACGACGTCGTTTTGGGCTTAGCTTCAGACCCCCA
1 AACGACGTCATTTTGAGCTTAGCCTCAGACCCCCA
*
37450128 AACGACGTCATTTTGAGC-TAGACCTCTGACCC
1 AACGACGTCATTTTGAGCTTAG-CCTCAGACCC
37450160 ACTGTGGACC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 3 0.11
35 24 0.89
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.25
Consensus pattern (35 bp):
AACGACGTCATTTTGAGCTTAGCCTCAGACCCCCA
Done.