Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 120 of 325
Found at i:37451465 original size:16 final size:15
Alignment explanation
Indices: 37451431--37451466 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
37451421 ATTTTTTTTT
37451431 AAAAAGTCGATTTCC
1 AAAAAGTCGATTTCC
37451446 AAAAAGTCGATTTCC
1 AAAAAGTCGATTTCC
37451461 AAAAAG
1 AAAAAG
37451467 GTTTTGACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (15 bp):
AAAAAGTCGATTTCC
Found at i:37453293 original size:18 final size:18
Alignment explanation
Indices: 37453272--37453311 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37453262 TCAGTAATTT
* *
37453272 AGTAATAGTCAATTAGTC
1 AGTAACAGTCAATTACTC
*
37453290 AGTAGCAGTCAATTACTC
1 AGTAACAGTCAATTACTC
37453308 AGTA
1 AGTA
37453312 CCTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (18 bp):
AGTAACAGTCAATTACTC
Found at i:37454050 original size:36 final size:36
Alignment explanation
Indices: 37454002--37454074 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 36
37453992 AACTTTTGTC
*
37454002 TAAATTCTAATTTAGCCCCTAAATCGAGACTAACTT
1 TAAATTCTAATTTAGCCCCTAAACCGAGACTAACTT
37454038 TAAATT-TCAATTTAGCCCCTAAACCGAGACTAACTT
1 TAAATTCT-AATTTAGCCCCTAAACCGAGACTAACTT
37454074 T
1 T
37454075 TATTCTTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (36 bp):
TAAATTCTAATTTAGCCCCTAAACCGAGACTAACTT
Found at i:37454537 original size:20 final size:22
Alignment explanation
Indices: 37454499--37454538 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
37454489 TTTCGTTTGC
37454499 TTTGTTTCTCTTATTCATTTCT
1 TTTGTTTCTCTTATTCATTTCT
37454521 TTTGTTTC-CTT-TTCATTT
1 TTTGTTTCTCTTATTCATTT
37454539 ATTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 8 0.44
ACGTcount: A:0.07, C:0.17, G:0.05, T:0.70
Consensus pattern (22 bp):
TTTGTTTCTCTTATTCATTTCT
Found at i:37454715 original size:14 final size:15
Alignment explanation
Indices: 37454691--37454736 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
37454681 ATAAATATCT
37454691 TATAATATAATTATAA
1 TATAAT-TAATTATAA
37454707 TA-AATTAATT-TAA
1 TATAATTAATTATAA
*
37454720 TATAATTTATTACTAA
1 TATAATTAATTA-TAA
37454736 T
1 T
37454737 TCGTATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATTAATTATAA
Found at i:37458643 original size:26 final size:25
Alignment explanation
Indices: 37458597--37458648 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
37458587 TCAAACATGC
37458597 ATTTAGGTCAATTTAACCCTAGAGGT
1 ATTTAGGTCAATTTAACCCTAG-GGT
* *
37458623 ATTTCGGT-AATTTATCTCCTAGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGT
37458648 A
1 A
37458649 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (25 bp):
ATTTAGGTCAATTTAACCCTAGGGT
Found at i:37460169 original size:26 final size:26
Alignment explanation
Indices: 37460133--37460242 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
37460123 CATGAAATTC
37460133 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
37460159 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
37460185 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
37460211 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
37460237 TTATCA
1 TTATCA
37460243 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:37463891 original size:9 final size:9
Alignment explanation
Indices: 37463879--37463915 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
37463869 CCCTTTTCTC
37463879 CCTTTCTTT
1 CCTTTCTTT
37463888 CCTTTCTTT
1 CCTTTCTTT
37463897 CCTTTCTTT
1 CCTTTCTTT
37463906 CCTTTCTTT
1 CCTTTCTTT
37463915 C
1 C
37463916 TCCCCTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (9 bp):
CCTTTCTTT
Found at i:37463951 original size:22 final size:22
Alignment explanation
Indices: 37463926--37463982 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
37463916 TCCCCTGTTC
*
37463926 TTCTCTGTTTCGTTTGC-TTTGT
1 TTCTCTGTTTCATTT-CTTTTGT
*
37463948 TTCTCTTTTTCATTTCTTTTGT
1 TTCTCTGTTTCATTTCTTTTGT
37463970 TTCT-T-TTTCATTT
1 TTCTCTGTTTCATTT
37463983 ATTATTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.25
21 2 0.06
22 22 0.69
ACGTcount: A:0.04, C:0.18, G:0.09, T:0.70
Consensus pattern (22 bp):
TTCTCTGTTTCATTTCTTTTGT
Found at i:37464159 original size:14 final size:15
Alignment explanation
Indices: 37464135--37464180 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
37464125 ATAAATATCT
37464135 TATAATATAATTATAA
1 TATAAT-TAATTATAA
37464151 TA-AATTAATT-TAA
1 TATAATTAATTATAA
*
37464164 TATAATTTATTACTAA
1 TATAATTAATTA-TAA
37464180 T
1 T
37464181 TCGTATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATTAATTATAA
Found at i:37465925 original size:178 final size:179
Alignment explanation
Indices: 37465625--37465969 Score: 579
Period size: 178 Copynumber: 1.9 Consensus size: 179
37465615 TAATAACCAT
* * *
37465625 TTAGGTCGTCAAGTATTTTTTTAATATAAAACTCAATAGCGATTGGATTTTTACAATTTAGTCTC
1 TTAGGTCATCAAGTATTTTTCTAATATAAAACTCAATAGCAATTGGATTTTTACAATTTAGTCTC
37465690 TGAACTTTAATTAATAAATTTTTCGATTAAATTTCTGAACCAATCTTTAATATATTTTCATACTA
66 TGAACTTTAATTAATAAATTTTTCGATTAAATTTCTGAACCAATCTTTAATATATTTTCATACTA
37465755 ACTCCATAAAACCTCTTATTATAATCTCACGGACTTGATTAATTGCCAA
131 ACTCCATAAAACCTCTTATTATAATCTCACGGACTTGATTAATTGCCAA
* * *
37465804 TTAGGTCATCAAGTA-TTTTCTAATATGAAACTCAATAGCAATTGGA-TTTTATAATTTAGTCTT
1 TTAGGTCATCAAGTATTTTTCTAATATAAAACTCAATAGCAATTGGATTTTTACAATTTAGTCTC
* *
37465867 TGAACTTTAATTAACT-ATTTTTCTCGGTTAAATTTCTGAACCAATCTTTAATATATTTTCATAC
66 TGAACTTTAATTAA-TAAATTTT-TCGATTAAATTTCTGAACCAATCTTTAATATATTTTCATAC
37465931 TAACTCCATAAAACCTCTTATTATAATCTCACGGACTTG
129 TAACTCCATAAAACCTCTTATTATAATCTCACGGACTTG
37465970 GTTTATAGAA
Statistics
Matches: 156, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
177 34 0.22
178 108 0.69
179 14 0.09
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (179 bp):
TTAGGTCATCAAGTATTTTTCTAATATAAAACTCAATAGCAATTGGATTTTTACAATTTAGTCTC
TGAACTTTAATTAATAAATTTTTCGATTAAATTTCTGAACCAATCTTTAATATATTTTCATACTA
ACTCCATAAAACCTCTTATTATAATCTCACGGACTTGATTAATTGCCAA
Found at i:37479441 original size:23 final size:23
Alignment explanation
Indices: 37479415--37479505 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 23
37479405 AATTGTGATG
37479415 TTAAAGTGCTGCAAATTGAAGTA
1 TTAAAGTGCTGCAAATTGAAGTA
* * * *
37479438 TTAAAGTGTTGTAAATTAAAGTGT
1 TTAAAGTGCTGCAAATTGAAGT-A
* * *
37479462 TTAAA-TGTTGTAAATTGAAGTG
1 TTAAAGTGCTGCAAATTGAAGTA
*
37479484 TCT-AAGTACTGCAAATTGAAGT
1 T-TAAAGTGCTGCAAATTGAAGT
37479506 GTTTAGTTGC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
22 3 0.05
23 48 0.86
24 5 0.09
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.36
Consensus pattern (23 bp):
TTAAAGTGCTGCAAATTGAAGTA
Found at i:37479455 original size:15 final size:14
Alignment explanation
Indices: 37479437--37479467 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
37479427 AAATTGAAGT
37479437 ATTAAAGTGTTGTAA
1 ATTAAAGTGTT-TAA
37479452 ATTAAAGTGTTTAA
1 ATTAAAGTGTTTAA
37479466 AT
1 AT
37479468 GTTGTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (14 bp):
ATTAAAGTGTTTAA
Found at i:37483979 original size:15 final size:16
Alignment explanation
Indices: 37483945--37483981 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
37483935 ATATACTAGA
*
37483945 ATAACAGATTATTCAG
1 ATAACAGATTAGTCAG
37483961 -TAACAGATT-GTCAG
1 ATAACAGATTAGTCAG
37483975 ATAACAG
1 ATAACAG
37483982 TTTCAATGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (16 bp):
ATAACAGATTAGTCAG
Found at i:37484918 original size:25 final size:25
Alignment explanation
Indices: 37484897--37484949 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
37484887 AAGAAAAGTG
37484897 AAATAAGAA-AGAAAGAACAAAAGAA
1 AAATAAGAACA-AAAGAACAAAAGAA
*
37484922 AAATAAGAACAAAAGAAGAAAA-AA
1 AAATAAGAACAAAAGAACAAAAGAA
37484946 AAAT
1 AAAT
37484950 TAAAGAGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 6 0.23
25 19 0.73
26 1 0.04
ACGTcount: A:0.77, C:0.04, G:0.13, T:0.06
Consensus pattern (25 bp):
AAATAAGAACAAAAGAACAAAAGAA
Found at i:37485367 original size:29 final size:30
Alignment explanation
Indices: 37485309--37485369 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
37485299 ATAACATTTG
*
37485309 AAAAGTTTAGGTACCAAATTAGATAAAAAA
1 AAAAGTTTAGGTACCAAATTAGAGAAAAAA
* * *
37485339 AAAAGTTTATGTATCAAATTAGGGAAAAAA
1 AAAAGTTTAGGTACCAAATTAGAGAAAAAA
37485369 A
1 A
37485370 TGTCAAGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.25
Consensus pattern (30 bp):
AAAAGTTTAGGTACCAAATTAGAGAAAAAA
Found at i:37485458 original size:28 final size:26
Alignment explanation
Indices: 37485418--37485472 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 26
37485408 AAAAAGTATC
*
37485418 AAGTTCAGGTACCAAATTAGGTAAAAAA
1 AAGTTCAGATACCAAATTA-G-AAAAAA
*
37485446 AAGTTTAGATACCAAATTAGAAAAAA
1 AAGTTCAGATACCAAATTAGAAAAAA
37485472 A
1 A
37485473 TGTCAAGGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 7 0.28
27 1 0.04
28 17 0.68
ACGTcount: A:0.55, C:0.09, G:0.15, T:0.22
Consensus pattern (26 bp):
AAGTTCAGATACCAAATTAGAAAAAA
Found at i:37486817 original size:21 final size:22
Alignment explanation
Indices: 37486761--37486818 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
37486751 TGCCTTTTAC
**
37486761 ATTAAAATATTATTTTTTAATTT
1 ATTAAAATATTATTCATT-ATTT
** *
37486784 ATTAGTATTTTATTCATT-TTT
1 ATTAAAATATTATTCATTATTT
37486805 ATTAAAATATTATT
1 ATTAAAATATTATT
37486819 TTTATATTGA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 14 0.52
23 13 0.48
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTAAAATATTATTCATTATTT
Found at i:37487884 original size:43 final size:41
Alignment explanation
Indices: 37487800--37487888 Score: 106
Period size: 43 Copynumber: 2.1 Consensus size: 41
37487790 AAAAAAAATT
** *
37487800 TTAGGTATTAAATTAAAAAAAAATCAAGTTCATGTATCAAA
1 TTAGGTATTAAATTAAAAAAAAATCAAGTTCAAATACCAAA
* * *
37487841 TTAGGTATTAAATTAAGAAAAAATGTTAAGTTTAAATACCAAA
1 TTAGGTATTAAATTAA-AAAAAA-ATCAAGTTCAAATACCAAA
37487884 TTAGG
1 TTAGG
37487889 GGAAAAAAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 16 0.40
42 6 0.15
43 18 0.45
ACGTcount: A:0.49, C:0.06, G:0.12, T:0.33
Consensus pattern (41 bp):
TTAGGTATTAAATTAAAAAAAAATCAAGTTCAAATACCAAA
Found at i:37489791 original size:11 final size:11
Alignment explanation
Indices: 37489775--37489799 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37489765 TTATTTTGAA
37489775 TTTAATTTAAT
1 TTTAATTTAAT
37489786 TTTAATTTAAT
1 TTTAATTTAAT
37489797 TTT
1 TTT
37489800 TTATTTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTAATTTAAT
Found at i:37489794 original size:16 final size:17
Alignment explanation
Indices: 37489767--37489798 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
37489757 TGAGAGTATT
37489767 ATTTTGAATTTAATTTA
1 ATTTTGAATTTAATTTA
37489784 ATTTT-AATTTAATTT
1 ATTTTGAATTTAATTT
37489799 TTTATTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTTTGAATTTAATTTA
Found at i:37491050 original size:24 final size:23
Alignment explanation
Indices: 37490993--37491052 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
37490983 TTTCATTTAC
37490993 TTATTGTT-TATTATTATTAGAT
1 TTATTGTTATATTATTATTAGAT
* * * *
37491015 TAAGTTGATATATTGTTATTATAT
1 TTA-TTGTTATATTATTATTAGAT
37491039 ATTATTGTTATATT
1 -TTATTGTTATATT
37491053 CCTATTTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
22 2 0.07
23 4 0.14
24 21 0.72
25 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (23 bp):
TTATTGTTATATTATTATTAGAT
Found at i:37491300 original size:55 final size:53
Alignment explanation
Indices: 37491211--37491314 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 53
37491201 AATATTATTA
*
37491211 ATAATTATTTTTAAACATTATTATTATTTTTAATACGTGCATATATATTATGTGTAT
1 ATAATTATTTTTAAACATTATTATTATTTCTAATA--TG--TATATATTATGTGTAT
* *
37491268 ATAATTGTTTTT-AATATTA-TATTATTTCTAATATGTATATATTATGT
1 ATAATTATTTTTAAACATTATTATTATTTCTAATATGTATATATTATGT
37491315 ATTTATCTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
51 12 0.27
53 2 0.05
55 13 0.30
56 6 0.14
57 11 0.25
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.55
Consensus pattern (53 bp):
ATAATTATTTTTAAACATTATTATTATTTCTAATATGTATATATTATGTGTAT
Found at i:37491312 original size:25 final size:24
Alignment explanation
Indices: 37491281--37491355 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 24
37491271 ATTGTTTTTA
*
37491281 ATATTATATTATTTCTAATATGTAT
1 ATATTATATTATTTCTAATA-CTAT
*
37491306 ATATTATGTATTTATCTCTAATACTAT
1 ATATTA--TA-TTATTTCTAATACTAT
* *
37491333 ACATTGTA-TATTTCTAATACTAT
1 ATATTATATTATTTCTAATACTAT
37491356 TATGCTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
23 14 0.33
25 8 0.19
27 9 0.21
28 11 0.26
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (24 bp):
ATATTATATTATTTCTAATACTAT
Found at i:37491381 original size:3 final size:3
Alignment explanation
Indices: 37491368--37491470 Score: 95
Period size: 3 Copynumber: 34.7 Consensus size: 3
37491358 TGCTATTACC
* * *
37491368 ATT ACT ATT ATT ATT ATT ATT ACTT A-T ATT ATT ATC ATT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * *
37491413 ATT ATG ATTT ATT ACT -TT ATT ATT ATC ATT ATT ACT ACT ATT A-T
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37491457 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
37491471 ATTTTTACCC
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
2 5 0.06
3 71 0.88
4 5 0.06
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:37491459 original size:23 final size:23
Alignment explanation
Indices: 37491425--37491469 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37491415 TATGATTTAT
37491425 TACTTTATTATTATCATTATTAC
1 TACTTTATTATTATCATTATTAC
*
37491448 TACTATTA-TATTATTATTATTA
1 TACT-TTATTATTATCATTATTA
37491470 TATTTTTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (23 bp):
TACTTTATTATTATCATTATTAC
Found at i:37493737 original size:19 final size:19
Alignment explanation
Indices: 37493715--37493760 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
37493705 ATTCCTTTCT
*
37493715 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-CA
*
37493734 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATCA
37493753 TTTGCATT
1 TTTGCATT
37493761 AGACTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:37496432 original size:3 final size:3
Alignment explanation
Indices: 37496426--37496456 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37496416 AATCCTAAAA
37496426 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
37496457 TCATGGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37498300 original size:66 final size:66
Alignment explanation
Indices: 37498180--37498311 Score: 201
Period size: 66 Copynumber: 2.0 Consensus size: 66
37498170 ATTCATATGT
* ** * * *
37498180 CATTCATAACATATCTAATTAGGAGCATTTGATTCATTTTGATCATAGCCTCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAATCATTTGAC
37498245 A
66 A
*
37498246 CATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAATCATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAATCATTTGAC
37498311 A
66 A
37498312 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAATCATTTGAC
A
Found at i:37498552 original size:89 final size:88
Alignment explanation
Indices: 37498369--37498584 Score: 285
Period size: 89 Copynumber: 2.5 Consensus size: 88
37498359 CAGTGAATTC
* *
37498369 ACAAGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTG-AATTGACAGATCTTAATCCCCTAAGC
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAATTGACAGATCCTAATCCCCTAAGC
* **
37498433 AGTAGGGAAACAGATCGAAGGTA
66 AGTAGGGAAACAGATCAAAGACA
* *
37498456 ACAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTG-CAGA-CCTCATCACCCTA
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAA-A-TTGACAGATCCTAATC-CCCTA
*
37498519 AGCAGTAGGGAAACAGATCAAAGACG
63 AGCAGTAGGGAAACAGATCAAAGACA
* * *
37498545 GCGAGCCTTAACCCCCTAAGCAGTAGAGTAACAGGCTGAA
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAA
37498585 TTACAAATCA
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
87 36 0.32
88 6 0.05
89 68 0.60
90 3 0.03
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (88 bp):
ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAATTGACAGATCCTAATCCCCTAAGC
AGTAGGGAAACAGATCAAAGACA
Found at i:37498737 original size:45 final size:45
Alignment explanation
Indices: 37498677--37499158 Score: 223
Period size: 45 Copynumber: 10.6 Consensus size: 45
37498667 AAATCACAAG
37498677 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
* * * * *
37498722 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---ATATAGCA-A-A
* * * * * *
37498773 TCTCATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA-ACA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
*
37498814 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
* * * * * *
37498859 TCTTATTTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAACCATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---ATATAGCA-A-A
* * * * * * * * *
37498910 TCTCATCTCTCTAAAGATGTAGTAGAGCAGA-T-CA-ACA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
* * * * * *
37498951 TCTTATCTCTCTAAAGTTGCAGTGGAGTAGACTAAAGAAAGAAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
* * * * * * *
37498996 TTTTATTTCACTGAAGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA---ATATAGCA-A-A
* * * * * * * *
37499047 TCTCATCTCTCTGAAGATGTAGTAGAGCAGA-T-CA-ACA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
* * * * *
37499088 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
* *
37499133 TCTTATTTCCCTGAAGTCGCAGTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGA
37499159 ACATATTGAA
Statistics
Matches: 330, Mismatches: 77, Indels: 60
0.71 0.16 0.13
Matches are distributed among these distances:
41 81 0.25
42 6 0.02
43 9 0.03
44 12 0.04
45 120 0.36
46 6 0.02
49 16 0.05
50 6 0.02
51 74 0.22
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAA
Found at i:37498827 original size:137 final size:137
Alignment explanation
Indices: 37498671--37499219 Score: 846
Period size: 137 Copynumber: 4.0 Consensus size: 137
37498661 AGATTGAAAT
* *
37498671 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATATAGCAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATTTCCCTGA
* * *
37498736 AGTTGCAGTGGAACAGATTGAAGCTATAAATCATAGATCTCATCTCTCTGAAGTTGCAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGATGCAGTAGAGC
37498801 AGATCAA
131 AGATCAA
*
37498808 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATTTCCCTGA
* * * *
37498873 AGTTGCAGTGGAACAAATTGAAGCTATAAACCATAGATCTCATCTCTCTAAAGATGTAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGATGCAGTAGAGC
37498938 AGATCAA
131 AGATCAA
* * * * * *
37498945 CACAAGTCTTATCTCTCTAAAGTTGCAGTGGAGTAGACTAAAGAAAGAAAATTTTATTTCACTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATTTCCCTGA
*
37499010 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGATGTAGTAGAGC
66 AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGATGCAGTAGAGC
37499075 AGATCAA
131 AGATCAA
* * *
37499082 CACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGAAAACAAGTCTTATTTCCCTGA
1 CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATTTCCCTGA
* * ** * *
37499147 AGTCGCAGTGGAACATATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAG
66 AGTTGCAGTGGAACAGATTGAAGCTATAAA-CCACAGATCTCATCTCTCTGAAGATGCAGTAGAG
*
37499212 CAAATCAA
130 CAGATCAA
37499220 AATAAACTTT
Statistics
Matches: 378, Mismatches: 33, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
137 342 0.90
138 36 0.10
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (137 bp):
CACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCTTATTTCCCTGA
AGTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGATGCAGTAGAGC
AGATCAA
Found at i:37500816 original size:3 final size:3
Alignment explanation
Indices: 37500803--37500905 Score: 86
Period size: 3 Copynumber: 34.7 Consensus size: 3
37500793 TGCTATTACC
* * * *
37500803 ATT ACT ATT ATT ATC ATT ATT ACTT A-T ATT ATT ATC ATT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * *
37500848 ATT ATG ATTT ATT ACT -TT ATT ATT ATC ATT ATT ACT ACT ATT A-T
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37500892 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
37500906 ATTTTTACCC
Statistics
Matches: 79, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
2 5 0.06
3 69 0.87
4 5 0.06
ACGTcount: A:0.33, C:0.09, G:0.01, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:37500879 original size:36 final size:36
Alignment explanation
Indices: 37500796--37500902 Score: 121
Period size: 36 Copynumber: 2.9 Consensus size: 36
37500786 ACTATTATGC
* * *
37500796 TATTACCATTACTATTATTATCATTATTACTTATAT
1 TATTATCATTATTATCATTATCATTATTACTTATAT
*
37500832 TATTATCATTATTATCATTATGATTTATTACTT-TAT
1 TATTATCATTATTATCATTATCA-TTATTACTTATAT
37500868 TATTATCATTATTACTACTATTAT-ATTATTA-TTAT
1 TATTATCATTATTA-T-C-ATTATCATTATTACTTAT
37500903 TATATTTTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
36 38 0.61
37 17 0.27
38 2 0.03
39 5 0.08
ACGTcount: A:0.33, C:0.10, G:0.01, T:0.56
Consensus pattern (36 bp):
TATTATCATTATTATCATTATCATTATTACTTATAT
Found at i:37500894 original size:23 final size:23
Alignment explanation
Indices: 37500860--37500904 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37500850 TATGATTTAT
37500860 TACTTTATTATTATCATTATTAC
1 TACTTTATTATTATCATTATTAC
*
37500883 TACTATTA-TATTATTATTATTA
1 TACT-TTATTATTATCATTATTA
37500905 TATTTTTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (23 bp):
TACTTTATTATTATCATTATTAC
Found at i:37510102 original size:125 final size:125
Alignment explanation
Indices: 37509889--37510139 Score: 475
Period size: 125 Copynumber: 2.0 Consensus size: 125
37509879 TGATTTCATG
*
37509889 ACTGGTGGAGGTGGGAGCCTTAATCGGCTAGTGATGTTCCAGCATGATGTTGAGTTTGGGGGTTG
1 ACTGGTGGAGGTGGGAGCCTTAATCGGCTAGTGATATTCCAGCATGATGTTGAGTTTGGGGGTTG
*
37509954 TAATACCATGGGAGTATTGATAAAATTGTTGATATGATTTGTACTGATAGGGATTTTGCT
66 TAATACCATGGGAGTATTGATAAAATTATTGATATGATTTGTACTGATAGGGATTTTGCT
*
37510014 ACTGGTGGAGGTGGGAGCCTTAATCGGCTAGTGATATTCCAGTATGATGTTGAGTTTGGGGGTTG
1 ACTGGTGGAGGTGGGAGCCTTAATCGGCTAGTGATATTCCAGCATGATGTTGAGTTTGGGGGTTG
37510079 TAATACCATGGGAGTATTGATAAAATTATTGATATGATTTGTACTGATAGGGATTTTGCT
66 TAATACCATGGGAGTATTGATAAAATTATTGATATGATTTGTACTGATAGGGATTTTGCT
37510139 A
1 A
37510140 GTTTTAAGGT
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 123 1.00
ACGTcount: A:0.24, C:0.09, G:0.31, T:0.35
Consensus pattern (125 bp):
ACTGGTGGAGGTGGGAGCCTTAATCGGCTAGTGATATTCCAGCATGATGTTGAGTTTGGGGGTTG
TAATACCATGGGAGTATTGATAAAATTATTGATATGATTTGTACTGATAGGGATTTTGCT
Found at i:37515341 original size:24 final size:25
Alignment explanation
Indices: 37515282--37515346 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
37515272 TATATAATAT
*
37515282 AATAATATATAATAACA-TGATGTAA
1 AATAATATATAATAA-ATTGATGAAA
37515307 AATAATA-ATAATAAATTG-TGAAA
1 AATAATATATAATAAATTGATGAAA
*
37515330 AATAAGATATAATAAAT
1 AATAATATATAATAAAT
37515347 AATAATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
23 11 0.31
24 18 0.50
25 7 0.19
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (25 bp):
AATAATATATAATAAATTGATGAAA
Found at i:37515417 original size:15 final size:15
Alignment explanation
Indices: 37515397--37515434 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
37515387 AAAAGTAAGG
37515397 TAAAAAATATCA-ATA
1 TAAAAAATAT-ATATA
37515412 TAAAAAATATATATA
1 TAAAAAATATATATA
37515427 TACAAAAA
1 TA-AAAAA
37515435 ATAAACATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 15 0.71
16 5 0.24
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAAATATATATA
Found at i:37517465 original size:205 final size:206
Alignment explanation
Indices: 37517009--37518214 Score: 1566
Period size: 205 Copynumber: 5.8 Consensus size: 206
37516999 AAATCTACTT
* * *
37517009 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
37517074 GTGAAAGCCAAATCAGCTATGTCTTTGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * *
37517139 GGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTG
131 GGATCTTGCTTCAGTCTAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTCTCCATCGAAGTG
37517204 GAGATGCCAGA
196 GAGATGCCAGA
* * * * * *
37517215 TTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
37517280 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGCCATACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * ** * **
37517345 GGATC-TACTTCAGTATAAACATCCGAAGGTTGGATCTGCTATGTGTCTGCCCTCTGTCGAAGTG
131 GGATCTTGCTTCAGTCTAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTCTCCATCGAAGTG
37517409 GAGATGCCAGA
196 GAGATGCCAGA
* * *
37517420 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
37517485 GTGAAAACCAAATCAGCTATGTCTTCGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * * * *
37517550 GGTTCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTATGTATCTGCTCTCCATTGAAGTG
131 GGATCTTGCTTCAGTCTAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTCTCCATCGAAGTG
*
37517615 CAGATGCCAGA
196 GAGATGCCAGA
* ** * * *
37517626 TTTTAATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
37517691 GTGAAAGCCAAATCAGCTATGTCTTCTATTTGTTCCTTGTAAACACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * * * *
37517756 GGATC-CGCTTCAG-CATAAACATCCGAAGG-CGAGATCTGCTATATGTCTGTTCTCTATCAAAG
131 GGATCTTGCTTCAGTC-TAAACATCTGAAGGTC-AGATCTGCTATGTGTCTGCTCTCCATCGAAG
37517818 TGGAGATGCCAGA
194 TGGAGATGCCAGA
* * *
37517831 CTTCGATTCGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * ** * * * **
37517896 GTGGAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAA-TACAGAGAGATAAGATC-TG
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG--TAAGCACA-AG-GAT--G-CCAAA
* *
37517959 TCATCTAGGATC-TGCTTCAG-CGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGC-CTTCC
124 TCATCTTGGATCTTGCTTCAGTC-TAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTC-TCC
* *
37518021 ATCAAAGTGGAAATGCCAGA
187 ATCGAAGTGGAGATGCCAGA
37518041 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
37518106 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCCCAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
37518171 GGATCTTGCTTCAGTCTAATCATCTGAAGGTCAGATCTGCTATG
131 GGATCTTGCTTCAGTCTAAACATCTGAAGGTCAGATCTGCTATG
37518215 CTGCGGCCTA
Statistics
Matches: 856, Mismatches: 128, Indels: 32
0.84 0.13 0.03
Matches are distributed among these distances:
204 3 0.00
205 337 0.39
206 334 0.39
207 8 0.01
208 7 0.01
209 3 0.00
210 163 0.19
211 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTCTAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCTCTCCATCGAAGTG
GAGATGCCAGA
Found at i:37517776 original size:411 final size:411
Alignment explanation
Indices: 37517009--37518214 Score: 1701
Period size: 411 Copynumber: 2.9 Consensus size: 411
37516999 AAATCTACTT
* * *
37517009 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAGTAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
37517074 GTGAAAGCCAAATCAGCTATGTCTTTGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
37517139 GGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTG
131 GGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTG
* *
37517204 GAGATGCCAGATTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTC
196 GAGATGCCAGATTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTC
* * *
37517269 AACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATGC
261 AACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCTATTTGTTCCTTGTAAGCACAAGGATGC
* * * *
37517334 CATACCATCTTGGATCTACTTCAGTATAAACATCCGAAGGTTGGATCTGCTATGTGTCTGCCCTC
326 CAAACCATCTTGGATCTGCTTCAGCATAAACATCCGAAGGTCGGATCTGCTATGTGTCTGCCCTC
* *
37517399 TGTCGAAGTGGAGATGCCAGA
391 TATCAAAGTGGAGATGCCAGA
*
37517420 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
37517485 GTGAAAACCAAATCAGCTATGTCTTCGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* *
37517550 GGTTCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTATGTATCTGCTCTCCATTGAAGTG
131 GGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTG
* *
37517615 CAGATGCCAGATTTTAATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTC
196 GAGATGCCAGATTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTC
* * *
37517680 AACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCTATTTGTTCCTTGTAAACACAAGGATAC
261 AACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCTATTTGTTCCTTGTAAGCACAAGGATGC
* * **
37517745 CAAACCATCTTGGATCCGCTTCAGCATAAACATCCGAAGG-CGAGATCTGCTATATGTCTGTTCT
326 CAAACCATCTTGGATCTGCTTCAGCATAAACATCCGAAGGTCG-GATCTGCTATGTGTCTGCCCT
37517809 CTATCAAAGTGGAGATGCCAGA
390 CTATCAAAGTGGAGATGCCAGA
* * *
37517831 CTTCGATTCGTTCTCTAACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * ** * * * *
37517896 GTGGAAGCCAAATCAGCTATATCTTCGA-TCTGCTCCCCGCCGAA-TACAGAGAGATAAGATC-T
66 GTGAAAGCCAAATCAGCTATGTCTTCGACT-TGTTCCTTG--TAAGCACA-AG-GAT--G-CCAA
* * * * * *
37517958 GTCATCTAGGATC-TGCTTCAG-CGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGC-CTTC
123 ATCATCTTGGATCTTGCTTCAGTC-TAATCGTCTGAAGGTCAGATCTGCTATGTATCTGCTC-TC
** * * *
37518020 CATCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTA
186 CATTGAAGTGGAGATGCCAGATTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTA
* *
37518085 GATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTT-TGATTTGTTCCTTGTAAG
251 GATTTGTTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCT-ATTTGTTCCTTGTAAG
* * * * *
37518149 CCCAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC-TAATCATCTGAAGGTCAGATCTGCTA
315 CACAAGGATGCCAAACCATCTTGGATC-TGCTTCAG-CATAAACATCCGAAGGTCGGATCTGCTA
37518213 TG
378 TG
37518215 CTGCGGCCTA
Statistics
Matches: 711, Mismatches: 69, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
410 2 0.00
411 473 0.67
412 3 0.00
413 4 0.01
414 6 0.01
415 180 0.25
416 40 0.06
417 3 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (411 bp):
CTTCGATTTGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGACTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATTGAAGTG
GAGATGCCAGATTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTC
AACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCTATTTGTTCCTTGTAAGCACAAGGATGC
CAAACCATCTTGGATCTGCTTCAGCATAAACATCCGAAGGTCGGATCTGCTATGTGTCTGCCCTC
TATCAAAGTGGAGATGCCAGA
Found at i:37526261 original size:15 final size:15
Alignment explanation
Indices: 37526219--37526261 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
37526209 ATAACTTTGA
*
37526219 ATGCAAATG-ATGTG
1 ATGCAAATGCATGAG
37526233 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
37526248 ATGCAAATGCATGA
1 ATGCAAATGCATGA
37526262 ATACAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 11 0.44
16 6 0.24
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:37526906 original size:13 final size:13
Alignment explanation
Indices: 37526888--37526922 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
37526878 AGGATACTTG
37526888 TGCCCTTTTGTAA
1 TGCCCTTTTGTAA
37526901 TGCCCTTTTGTAA
1 TGCCCTTTTGTAA
*
37526914 TGCTCTTTT
1 TGCCCTTTT
37526923 AGATCATCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.11, C:0.23, G:0.14, T:0.51
Consensus pattern (13 bp):
TGCCCTTTTGTAA
Found at i:37530329 original size:19 final size:19
Alignment explanation
Indices: 37530301--37530339 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37530291 ATATACATAA
37530301 AAAATAAAAA-ATATAGAAT
1 AAAATAAAAATATATA-AAT
*
37530320 AAAATGAAAATATATAAAT
1 AAAATAAAAATATATAAAT
37530339 A
1 A
37530340 TTATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAATAAAAATATATAAAT
Found at i:37530493 original size:15 final size:15
Alignment explanation
Indices: 37530473--37530510 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
37530463 AAAAGTAAGG
37530473 TAAAAAATATCA-ATA
1 TAAAAAATAT-ATATA
37530488 TAAAAAATATATATA
1 TAAAAAATATATATA
37530503 TACAAAAA
1 TA-AAAAA
37530511 ATAAACATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 15 0.71
16 5 0.24
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAAATATATATA
Found at i:37532705 original size:11 final size:11
Alignment explanation
Indices: 37532689--37532737 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
37532679 CATACTCATA
37532689 TTTTTTTGAAT
1 TTTTTTTGAAT
* *
37532700 TTTTTTCGTAT
1 TTTTTTTGAAT
37532711 TTTTTTTGAAACT
1 TTTTTTTG-AA-T
37532724 TTTTTTTGAAT
1 TTTTTTTGAAT
37532735 TTT
1 TTT
37532738 ACTTGAGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 20 0.62
12 3 0.09
13 9 0.28
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.71
Consensus pattern (11 bp):
TTTTTTTGAAT
Found at i:37543211 original size:22 final size:20
Alignment explanation
Indices: 37543171--37543219 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
37543161 CAATTTAAAA
37543171 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
37543191 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
37543211 TGTAAAAAT
1 TATAAAAAT
37543220 AACTTTTACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:37550431 original size:20 final size:20
Alignment explanation
Indices: 37550398--37550436 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37550388 TGTATCGCCA
* *
37550398 ATTATATTTTTTATGATTAC
1 ATTATATATATTATGATTAC
*
37550418 ATTATATATATTATTATTA
1 ATTATATATATTATGATTA
37550437 TTATTAAATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTATATATATTATGATTAC
Found at i:37550450 original size:26 final size:24
Alignment explanation
Indices: 37550400--37550450 Score: 57
Period size: 26 Copynumber: 2.0 Consensus size: 24
37550390 TATCGCCAAT
* *
37550400 TATATTTTTTATGATTACATTATA
1 TATATTTTTTATGATTAAATCATA
*
37550424 TATATTATTATTATTATTAAATCATA
1 TATATT-TT-TTATGATTAAATCATA
37550450 T
1 T
37550451 TTTAACCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
26 14 0.64
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
TATATTTTTTATGATTAAATCATA
Found at i:37550954 original size:16 final size:17
Alignment explanation
Indices: 37550933--37550966 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37550923 CATTTTTTTG
*
37550933 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
37550949 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
37550966 C
1 C
37550967 ATTTTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:37554999 original size:128 final size:128
Alignment explanation
Indices: 37554762--37555062 Score: 381
Period size: 128 Copynumber: 2.3 Consensus size: 128
37554752 CATGAAAAAC
* * * * * * *
37554762 CGAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCTAAACATTGAACTTGCCTTGTTTTAGA
1 CGAAACCCAGCACGGTAGGGCACGATTCCTCAAATTTCCAAACATCGAACTTACCTTGTTGTAAA
* *
37554827 ATTTAAAAAAAAACACGAGTGAAGTTCTAAAGGAATATTTGATTATTTTGAACAAA-AGGACAAT
66 ATTT-AAAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGA-AAT
* *
37554891 CGAAACCCAGTACGGTAGGGCACGATTCCTCAAATCTCCAAACATCGAACATTACCTTGTTGTAA
1 CGAAACCCAGCACGGTAGGGCACGATTCCTCAAATTTCCAAACATCGAAC-TTACCTTGTTGTAA
* * * *
37554956 AATTT-AGAAAAACATGAGTGAAATTCTAAATGAATATTCGATTATTTTGAACAAACGGGAAAT
65 AATTTAAAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAAT
* * * * *
37555019 AGAAACCCAGCACGATAGGGCACTATTCCCCTAATTTCCAAACA
1 CGAAACCCAGCACGGTAGGGCACGATTCCTCAAATTTCCAAACA
37555063 CCAAATATTG
Statistics
Matches: 148, Mismatches: 22, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
128 85 0.57
129 47 0.32
130 16 0.11
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (128 bp):
CGAAACCCAGCACGGTAGGGCACGATTCCTCAAATTTCCAAACATCGAACTTACCTTGTTGTAAA
ATTTAAAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAAT
Found at i:37559942 original size:26 final size:26
Alignment explanation
Indices: 37559906--37559959 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
37559896 ACAGTTTTCG
37559906 TAAAATCAACCTATTCCCATAATTCT
1 TAAAATCAACCTATTCCCATAATTCT
37559932 TAAAATCAACCTATTCCCATAATTCT
1 TAAAATCAACCTATTCCCATAATTCT
37559958 TA
1 TA
37559960 CAAAAAAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAAATCAACCTATTCCCATAATTCT
Found at i:37560395 original size:13 final size:15
Alignment explanation
Indices: 37560366--37560400 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
37560356 CGTAAGAACA
37560366 ATTTTCAAGCTATAT
1 ATTTTCAAGCTATAT
37560381 ATTTTC-AGCATATAT
1 ATTTTCAAGC-TATAT
37560396 ATTTT
1 ATTTT
37560401 TTTTGCTCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (15 bp):
ATTTTCAAGCTATAT
Found at i:37561497 original size:19 final size:22
Alignment explanation
Indices: 37561473--37561512 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
37561463 CAGAAAGGAA
37561473 AAAGGA-AA-AAAA-AAATTTG
1 AAAGGAGAAGAAAATAAATTTG
37561492 AAAGGAGAAGAAAATAAATTT
1 AAAGGAGAAGAAAATAAATTT
37561513 TTTATTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 2 0.11
21 4 0.22
22 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.17, T:0.17
Consensus pattern (22 bp):
AAAGGAGAAGAAAATAAATTTG
Found at i:37563304 original size:19 final size:19
Alignment explanation
Indices: 37563280--37563317 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
37563270 AAAATTACGT
37563280 ATTTAAAATATAA-ATATAA
1 ATTTAAAA-ATAATATATAA
37563299 ATTTAAAAATAATATATAA
1 ATTTAAAAATAATATATAA
37563318 TAAATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTTAAAAATAATATATAA
Found at i:37563592 original size:20 final size:17
Alignment explanation
Indices: 37563547--37563583 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
37563537 TTTAGTTTAG
37563547 TGATAAAATTAATAGAA
1 TGATAAAATTAATAGAA
*
37563564 TGATAAAATTAATAGCA
1 TGATAAAATTAATAGAA
37563581 TGA
1 TGA
37563584 GTTTAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.30
Consensus pattern (17 bp):
TGATAAAATTAATAGAA
Found at i:37567765 original size:250 final size:252
Alignment explanation
Indices: 37567320--37567832 Score: 949
Period size: 250 Copynumber: 2.0 Consensus size: 252
37567310 AAATAATTAA
37567320 AAATCAATAGCGATTAATTTTTACCAATTTTATAATTTAGTCATTGTACCTAAATTAACTATCCA
1 AAATCAATAGCGATTAATTTTTACCAATTTTATAA-TTA-TCATTGTACCTAAATTAACTATCCA
37567385 ATTAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
64 ATTAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
37567450 TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAA
129 TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAA
*
37567515 ACGGGTTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
194 ACGGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
*
37567574 AAATCAATAGCGATTAATTTTTACCAATTTTATAA-T-TCATTGTACCTTAATTAACTATCCAAT
1 AAATCAATAGCGATTAATTTTTACCAATTTTATAATTATCATTGTACCTAAATTAACTATCCAAT
*
37567637 TAACAAAATTAAGGGATTGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAATA
66 TAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAATA
* *
37567702 ATATTTACGAACTCAAACATTAAAAATGGGGTTCCGTAATAGCCATTTTCAACACCACTGAAAAT
131 ATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAAAC
37567767 GGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
196 GGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
37567824 AAATCAATA
1 AAATCAATA
37567833 CAGTCAATAT
Statistics
Matches: 254, Mismatches: 5, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
250 218 0.86
252 1 0.00
254 35 0.14
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (252 bp):
AAATCAATAGCGATTAATTTTTACCAATTTTATAATTATCATTGTACCTAAATTAACTATCCAAT
TAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAATA
ATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAAAC
GGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
Found at i:37568941 original size:254 final size:254
Alignment explanation
Indices: 37568481--37568997 Score: 980
Period size: 254 Copynumber: 2.0 Consensus size: 254
37568471 AAATAATTAA
37568481 AAATCAATAGCGATTAATTTTTACCAATTTTATAATTTAGTCATTGTACCTAAATTAACTATCCA
1 AAATCAATAGCGATTAATTTTTACCAATTTTATAATTTAGTCATTGTACCTAAATTAACTATCCA
37568546 ATTAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
66 ATTAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
37568611 TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAA
131 TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAA
*
37568676 ACGGGTTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
196 ACGGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
*
37568735 AAATCAATAGCGATTAATTTTTACCAATTTTATAATTTAGTCATTGTACCTTAATTAACTATCCA
1 AAATCAATAGCGATTAATTTTTACCAATTTTATAATTTAGTCATTGTACCTAAATTAACTATCCA
*
37568800 ATTAACAAAATTAAGGGATTGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
66 ATTAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
*
37568865 TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGTAATAGCCATTTTCAACACCACTGAAA
131 TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAA
**
37568930 TTGGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
196 ACGGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
37568989 AAATCAATA
1 AAATCAATA
37568998 CAGTCAATAT
Statistics
Matches: 257, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
254 257 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (254 bp):
AAATCAATAGCGATTAATTTTTACCAATTTTATAATTTAGTCATTGTACCTAAATTAACTATCCA
ATTAACAAAATTAAGGGATCGAACTTTAATTAACTTTTATTATAATATCGTAAATATTAAAATAA
TAATATTTACGAACTCAAACATTAAAAATGGGGTTCCGAAATAGCCATTTTCAACACCACTGAAA
ACGGATTGTTATACTTCTTGGTACTTTCATGATTTAAATCAATAATCAATAGAACCAAG
Found at i:37570746 original size:142 final size:143
Alignment explanation
Indices: 37570577--37570854 Score: 459
Period size: 142 Copynumber: 2.0 Consensus size: 143
37570567 TAAATGACTG
* *
37570577 TCATCATTATCATCCATTATCTCATAAGAAACAATGAGTCAATAACCATTTAGGTCCCTTGGTTA
1 TCATCATTATCATCCACTATCTCATAAGAAACAATGAGTCAATAACCATTTAGGTCCCTTGATTA
* *
37570642 ATTACCAATTAGGTCATCAAACATTTTCCAATATAAAATTCAATAGCAATTGGAC-TTTACAATT
66 AATACCAATTAGGTCATCAAACATTTTCCAATATAAAATTCAATAACAATTGGACTTTTACAATT
37570706 TAGTCTCTAACTA
131 TAGTCTCTAACTA
* * *
37570719 TCATCATTATCATCCACTATCTTATAAGGAACAATGAGTTAATAACCATTTAGGTCCCTTGATTA
1 TCATCATTATCATCCACTATCTCATAAGAAACAATGAGTCAATAACCATTTAGGTCCCTTGATTA
* * *
37570784 AATACCAATTAGGTCATCAAGCATTTTCCACTATAAAATTTAATAACAATTGGACTTTTACAATT
66 AATACCAATTAGGTCATCAAACATTTTCCAATATAAAATTCAATAACAATTGGACTTTTACAATT
37570849 TAGTCT
131 TAGTCT
37570855 TTAAACTTTA
Statistics
Matches: 125, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
142 110 0.88
143 15 0.12
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.35
Consensus pattern (143 bp):
TCATCATTATCATCCACTATCTCATAAGAAACAATGAGTCAATAACCATTTAGGTCCCTTGATTA
AATACCAATTAGGTCATCAAACATTTTCCAATATAAAATTCAATAACAATTGGACTTTTACAATT
TAGTCTCTAACTA
Found at i:37573279 original size:14 final size:14
Alignment explanation
Indices: 37573260--37573286 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37573250 TTAGTGTAAG
37573260 AAAATAAATCCTTT
1 AAAATAAATCCTTT
37573274 AAAATAAATCCTT
1 AAAATAAATCCTT
37573287 GTTGTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAATAAATCCTTT
Found at i:37575810 original size:21 final size:21
Alignment explanation
Indices: 37575784--37575832 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
37575774 CTAAAACATT
*
37575784 GGCATGTCCCATAGCCACACG
1 GGCATGTCCCATAGCCACACA
* *
37575805 GGCATGTCCCTTGGCCACACA
1 GGCATGTCCCATAGCCACACA
37575826 GGCATGT
1 GGCATGT
37575833 GACCCCTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.35, G:0.27, T:0.18
Consensus pattern (21 bp):
GGCATGTCCCATAGCCACACA
Found at i:37581811 original size:21 final size:20
Alignment explanation
Indices: 37581787--37581826 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
37581777 AATTATGTTT
* *
37581787 ATTTTTACAATTTCAATTTCA
1 ATTTATACAATGTC-ATTTCA
37581808 ATTTATACAATGTCATTTC
1 ATTTATACAATGTCATTTC
37581827 GTCCATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.50
Consensus pattern (20 bp):
ATTTATACAATGTCATTTCA
Found at i:37582243 original size:28 final size:28
Alignment explanation
Indices: 37582203--37582257 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
37582193 ATTCCAATGA
37582203 TTACGTATTGGAGAAGAACTAAATCTTT
1 TTACGTATTGGAGAAGAACTAAATCTTT
37582231 TTACGTATTGGAGAAGAACTAAATCTT
1 TTACGTATTGGAGAAGAACTAAATCTT
37582258 GCTAAAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (28 bp):
TTACGTATTGGAGAAGAACTAAATCTTT
Found at i:37583589 original size:26 final size:26
Alignment explanation
Indices: 37583553--37583662 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
37583543 TGATACAAAT
*
37583553 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
37583579 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
37583605 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
37583631 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
37583657 TGATAA
1 TGATAA
37583663 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:37585321 original size:27 final size:27
Alignment explanation
Indices: 37585280--37585419 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
37585270 GAGGAAGCGT
*
37585280 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
37585307 TCCGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
37585334 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
37585361 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
37585389 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
37585415 TCTGG
1 TCTGG
37585420 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:37585368 original size:54 final size:55
Alignment explanation
Indices: 37585280--37585419 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
37585270 GAGGAAGCGT
* * * *
37585280 TCTGGTGGCTATGCCACAAATATCTGATCCGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
37585334 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
37585389 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
37585420 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:37601932 original size:54 final size:54
Alignment explanation
Indices: 37601857--37601966 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
37601847 TCCATTTCCT
*
37601857 AAGACTAAAAGTAGGCCTCTACCTTCTATGGGTAGAAAAACACAAGCTTCCTAA
1 AAGACTAAAAGCAGGCCTCTACCTTCTATGGGTAGAAAAACACAAGCTTCCTAA
37601911 AAGACTAAAAGCAGGCCTCTACCTTCTATGGGTAGAAAAACACAAGCTTCCTAA
1 AAGACTAAAAGCAGGCCTCTACCTTCTATGGGTAGAAAAACACAAGCTTCCTAA
37601965 AA
1 AA
37601967 ATAACTTTTG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.21
Consensus pattern (54 bp):
AAGACTAAAAGCAGGCCTCTACCTTCTATGGGTAGAAAAACACAAGCTTCCTAA
Found at i:37606654 original size:30 final size:30
Alignment explanation
Indices: 37606615--37606681 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
37606605 CGTTCAAAAA
* *
37606615 CTTGAGAAGACCCGATATCT-AGTTCAGGAG
1 CTTGGGAAGACCCGATATCTCA-CTCAGGAG
* *
37606645 CTTGGGAAGACTCGATATCTCACTCAGGAT
1 CTTGGGAAGACCCGATATCTCACTCAGGAG
37606675 CTTGGGA
1 CTTGGGA
37606682 TTGAGAAGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 31 0.97
31 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (30 bp):
CTTGGGAAGACCCGATATCTCACTCAGGAG
Found at i:37606728 original size:30 final size:29
Alignment explanation
Indices: 37606628--37606747 Score: 87
Period size: 30 Copynumber: 3.8 Consensus size: 29
37606618 GAGAAGACCC
*
37606628 GATATCTAGTTCAGGAGCTTGGGAAGACTC
1 GATATCTA-TTCAGGAGCTTGGGAAGACTA
* * *
37606658 GATATCTCACTCAGGATCTTGGGATTGAGAAGATAA
1 GATATCT-ATTCAGGAGCTTGGGA---AG-A-CT-A
*
37606694 GATATCTCATTCAGGAGCTTGGGAAGACTT
1 GATATCT-ATTCAGGAGCTTGGGAAGACTA
* *
37606724 GATATCGTGTTCAAGAGCTTGGGA
1 GATATC-TATTCAGGAGCTTGGGA
37606748 TGGAGAAGAC
Statistics
Matches: 72, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
30 40 0.56
31 3 0.04
32 1 0.01
33 4 0.06
34 1 0.01
35 1 0.01
36 22 0.31
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
GATATCTATTCAGGAGCTTGGGAAGACTA
Found at i:37606745 original size:66 final size:66
Alignment explanation
Indices: 37606628--37606786 Score: 178
Period size: 66 Copynumber: 2.4 Consensus size: 66
37606618 GAGAAGACCC
* * *
37606628 GATATCTAGTTCAGGAGCTTGGGAAGACTCGATATCTCACTCAGGATCTTGGGATTGAGAAGATA
1 GATATCTAGTTCAGGAGCTTGGGAAGACTCGATATCTCACTCAAGAGCTTGGGATGGAGAAGATA
37606693 A
66 A
* **
37606694 GATATCTCA-TTCAGGAGCTTGGGAAGACTTGATATCGT-GTTCAAGAGCTTGGGATGGAGAAGA
1 GATATCT-AGTTCAGGAGCTTGGGAAGACTCGATATC-TCACTCAAGAGCTTGGGATGGAGAAGA
***
37606757 CCT
64 TAA
* * *
37606760 GATATCTTGTTTAGGAGTTTGGGAAGA
1 GATATCTAGTTCAGGAGCTTGGGAAGA
37606787 TCCGGTGTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
66 76 0.97
67 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (66 bp):
GATATCTAGTTCAGGAGCTTGGGAAGACTCGATATCTCACTCAAGAGCTTGGGATGGAGAAGATA
A
Found at i:37612046 original size:131 final size:131
Alignment explanation
Indices: 37611808--37612049 Score: 360
Period size: 131 Copynumber: 1.8 Consensus size: 131
37611798 AAAATTCCTT
* * *
37611808 AAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCTTATCGTGCTGGGTTGTGAT
1 AAAACGAAGACAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAACGTGCTGGGTTGTGAT
* * **
37611873 TTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTC
66 TTCTCGTTTGTTCAAAACAATCGAAGATTCCTTGAGAATTTCACTCGTGTTTATTAAAAACCTTC
37611938 C
131 C
* * * *
37611939 AAAACGAATACAATACTCGGTGTTTGATAATTCGGGAATCGTGCCCTAACGTGTTGGGTTGTGAT
1 AAAACGAAGACAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAACGTGCTGGGTTGTGAT
*
37612004 TTCTCGTTTTTTCAAAACAATCGAAGATTCCTTCGA-AATTTCACTC
66 TTCTCGTTTGTTCAAAACAATCGAAGATTCCTT-GAGAATTTCACTC
37612050 ACGTTTTCAA
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
131 97 0.99
132 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (131 bp):
AAAACGAAGACAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAACGTGCTGGGTTGTGAT
TTCTCGTTTGTTCAAAACAATCGAAGATTCCTTGAGAATTTCACTCGTGTTTATTAAAAACCTTC
C
Found at i:37613726 original size:19 final size:18
Alignment explanation
Indices: 37613704--37613763 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
37613694 ATCCCATGCA
37613704 TTTGCATTGCATTGCATC
1 TTTGCATTGCATTGCATC
37613722 -TT---TTGCATTGCATC
1 TTTGCATTGCATTGCATC
*
37613736 TTTTACATTGCATTGCATC
1 -TTTGCATTGCATTGCATC
37613755 ATTTGCATT
1 -TTTGCATT
37613764 AGATTTTCCC
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
14 12 0.34
16 2 0.06
17 2 0.06
19 19 0.54
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.48
Consensus pattern (18 bp):
TTTGCATTGCATTGCATC
Found at i:37613763 original size:14 final size:14
Alignment explanation
Indices: 37613710--37613748 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
37613700 TGCATTTGCA
37613710 TTGCATTGCATCTT
1 TTGCATTGCATCTT
37613724 TTGCATTGCATCTT
1 TTGCATTGCATCTT
*
37613738 TTACATTGCAT
1 TTGCATTGCAT
37613749 TGCATCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.49
Consensus pattern (14 bp):
TTGCATTGCATCTT
Found at i:37617443 original size:64 final size:64
Alignment explanation
Indices: 37617367--37617554 Score: 277
Period size: 64 Copynumber: 2.9 Consensus size: 64
37617357 TCATTCATAA
* * * * *
37617367 CACATCTAGTTAGGAGCATTTGATTCGTGTCGATTATAACATTCTAATTATTTGAGATAAACAT
1 CACATCTAGTTAGGAACATTTGATTCATGTCGATCATAGCATTCTAATTATTTGACATAAACAT
*
37617431 CACATCTAGTTAGGAACATTTGATTCATTTCGATCATAGCATTCTAATTATTTGACATAAACAT
1 CACATCTAGTTAGGAACATTTGATTCATGTCGATCATAGCATTCTAATTATTTGACATAAACAT
* ** * *
37617495 CACATCTAGTTAGGAACAATTGATTCATGTTAATCATAGCATCCTAATTATTTGGCATAA
1 CACATCTAGTTAGGAACATTTGATTCATGTCGATCATAGCATTCTAATTATTTGACATAA
37617555 GCATAGGCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 112 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTGATTCATGTCGATCATAGCATTCTAATTATTTGACATAAACAT
Found at i:37617810 original size:131 final size:131
Alignment explanation
Indices: 37617576--37618102 Score: 779
Period size: 131 Copynumber: 4.0 Consensus size: 131
37617566 TGAAACAGAA
* * * ** * * *
37617576 TGTAGATCTTATCTCCTTGAAGCTGCAGTGGGGCAAATTGAAGATGATGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCAAAGACGACGAATCTTGGCTTCCTAA
* *
37617641 AGATGCAGTGAAGCATATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGATGAAGA
66 AGATGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
37617706 T
131 T
37617707 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCAAAGACGACGAATCTTGGCTTCCTAA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCAAAGACGACGAATCTTGGCTTCCTAA
* * * *
37617772 AGTTGCAGTGAAGCAGATTTAAGCTAGTCCTAGCTCCCTAAAATTGTAGTGGAGTAGGCTGAATA
66 AGATGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
37617837 T
131 T
* *
37617838 TGTAGATCTTGTCTCCCTGAAGTTACAGTGGGGCAAATCGAAA-ATGACGAATCTTGGCTTCCTA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATC-AAAGACGACGAATCTTGGCTTCCTA
* *
37617902 AAGATGCAGTGAAGCAGATTTAAGCAAGTCCTAGTTCCCTAAAGTTGTAGTGGAGTAGGCCGAAG
65 AAGATGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
37617967 AT
130 AT
* * *
37617969 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACAAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCAAAGACGACGAATCTTGGCTTCCTAA
* * * *
37618034 AGTTGTAGTGAAGCAAATTTAAGCCACCA-TCCTAGCTCCCTAATGTTGTAGTGGAGTAGGCTGA
66 AGATGCAGTGAAGCAGATTTAAG-CA--AGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
37618098 AGAT
128 AGAT
37618102 T
1 T
37618103 ACAGACCTTG
Statistics
Matches: 358, Mismatches: 33, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
130 2 0.01
131 313 0.87
132 5 0.01
133 37 0.10
134 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (131 bp):
TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCAAAGACGACGAATCTTGGCTTCCTAA
AGATGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
T
Found at i:37621283 original size:131 final size:131
Alignment explanation
Indices: 37621132--37621375 Score: 366
Period size: 131 Copynumber: 1.9 Consensus size: 131
37621122 GTTTCACAAC
* *
37621132 TATTAAAAATTCTTTCAAACGAAGT-CAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAT
1 TATTAAAAATCCTTTCAAACGAA-TACAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAA
*
37621196 CGTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCATTCGTG
65 CGTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTTAGGTTTTCATTCGTG
37621261 TT
130 TT
* * *
37621263 TATTAAAAA-CCTTTCAAAACGAATACAATACTTGGTGTTTGATAATTCGGGAATCGTGCCCTAA
1 TATTAAAAATCCTTTC-AAACGAATACAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAA
* ** *
37621327 CGTGTTGGGTTGTGATTTCTCATTTTTTCAAAACAATCGAAGATTCCTT
65 CGTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTT
37621376 CGAAATTTCA
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
130 6 0.06
131 95 0.94
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (131 bp):
TATTAAAAATCCTTTCAAACGAATACAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAAC
GTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTTAGGTTTTCATTCGTGT
T
Found at i:37621401 original size:131 final size:130
Alignment explanation
Indices: 37621132--37621404 Score: 336
Period size: 131 Copynumber: 2.1 Consensus size: 130
37621122 GTTTCACAAC
* *
37621132 TATTAAAAATTCTTTCAAACGAAGTCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATC
1 TATTAAAAA-CCTTTCAAACGAAGTCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAAC
* * ** * **
37621197 GTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCATTCGTGT
65 GTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTGAGAATTTCACTCACGT
37621262 T
130 T
* * *
37621263 TATTAAAAACCTTTCAAAACGAA-TACAATACTTGGTGTTTGATAATTCGGGAATCGTGCCCTAA
1 TATTAAAAACCTTTC-AAACGAAGT-CAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAA
* ** *
37621327 CGTGTTGGGTTGTGATTTCTCATTTTTTCAAAACAATCGAAGATTCCTTCGA-AATTTCACTCAC
64 CGTGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTT-GAGAATTTCACTCAC
37621391 GTT
128 GTT
37621394 T-TCTAAAAACC
1 TAT-TAAAAACC
37621405 CTTGAAAATG
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
130 7 0.06
131 114 0.93
132 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (130 bp):
TATTAAAAACCTTTCAAACGAAGTCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTAACG
TGCTAAGTTGTGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTGAGAATTTCACTCACGTT
Found at i:37623480 original size:27 final size:27
Alignment explanation
Indices: 37623429--37623503 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
37623419 GAATTTGAAG
**
37623429 AAACTTAAAATCTAATTTTTTTTAAAA
1 AAACTTAAAATCTAATTTTACTTAAAA
**
37623456 AAACTTAAAAATCTAA-TTTACTTAACTT
1 AAACTT-AAAATCTAATTTTACTTAA-AA
* *
37623484 GAATTTAAAATCTAATTTTA
1 AAACTTAAAATCTAATTTTA
37623504 TTGAATTTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (27 bp):
AAACTTAAAATCTAATTTTACTTAAAA
Found at i:37623871 original size:23 final size:24
Alignment explanation
Indices: 37623839--37623904 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 24
37623829 AATTAATCTC
*
37623839 AATATAACTTAAAATCTAAATT-T
1 AATAAAACTTAAAATCTAAATTCT
* *
37623862 ACTAATACTTAAAAAATCT-AATTCT
1 AATAAAACTT--AAAATCTAAATTCT
37623887 AATAAAACTTAAAATCTA
1 AATAAAACTTAAAATCTA
37623905 TTTTTTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
23 14 0.41
24 4 0.12
25 16 0.47
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAAAACTTAAAATCTAAATTCT
Found at i:37623881 original size:25 final size:25
Alignment explanation
Indices: 37623826--37623900 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
37623816 CGGGTCACTG
*
37623826 AAAAAT-TAA-TCTCAATATAACTT-
1 AAAAATCTAATTCT-AATAAAACTTA
* *
37623849 -AAAATCTAAATT-TACTAATACTTA
1 AAAAATCT-AATTCTAATAAAACTTA
37623873 AAAAATCTAATTCTAATAAAACTTA
1 AAAAATCTAATTCTAATAAAACTTA
37623898 AAA
1 AAA
37623901 TCTATTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
22 5 0.12
23 8 0.20
24 7 0.17
25 21 0.51
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (25 bp):
AAAAATCTAATTCTAATAAAACTTA
Found at i:37628220 original size:5 final size:5
Alignment explanation
Indices: 37628212--37628262 Score: 68
Period size: 5 Copynumber: 10.0 Consensus size: 5
37628202 TAACTAATTT
*
37628212 AATAA AATAA AATAA AATAA AATAA ATTGAA AAT-A AATAAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AAT-AA AATAA AAT-AA AATAA AATAA
37628263 TGTATTCCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
4 4 0.10
5 29 0.71
6 8 0.20
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:37631437 original size:27 final size:27
Alignment explanation
Indices: 37631407--37631458 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
37631397 GGGTTACGGC
37631407 GTGAGGACGACAATGGGGGGCGACGAT
1 GTGAGGACGACAATGGGGGGCGACGAT
* * *
37631434 GTGAGGACGGCGATGGGGTGCGACG
1 GTGAGGACGACAATGGGGGGCGACG
37631459 GCGGTTGGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.52, T:0.12
Consensus pattern (27 bp):
GTGAGGACGACAATGGGGGGCGACGAT
Found at i:37639759 original size:47 final size:47
Alignment explanation
Indices: 37639705--37639989 Score: 410
Period size: 47 Copynumber: 6.1 Consensus size: 47
37639695 TTAGGATTTT
** * * *
37639705 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37639752 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37639799 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
37639846 ATGTGATGAATGTGAATATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
37639893 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
37639940 ATGTGATGAACGTGGAAC-TGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
37639987 ATG
1 ATG
37639990 CGAAATGTGT
Statistics
Matches: 217, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 213 0.98
48 4 0.02
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:37639852 original size:22 final size:22
Alignment explanation
Indices: 37639825--37639899 Score: 80
Period size: 22 Copynumber: 3.3 Consensus size: 22
37639815 CATGCATATG
37639825 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
37639847 TGTGATGAATG-TGAATATGCACATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
37639872 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
37639894 TGTGAT
1 TGTGAT
37639900 GAATGTGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
22 17 0.40
23 7 0.17
24 7 0.17
25 11 0.26
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:37640019 original size:46 final size:46
Alignment explanation
Indices: 37639963--37640145 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
37639953 GGAACTGTAT
* *
37639963 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
37640009 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTTTGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
37640055 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
37640101 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
37640146 TGTATATATA
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:37641654 original size:9 final size:11
Alignment explanation
Indices: 37641630--37641664 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
37641620 AATCTTTATC
37641630 ATATATTAATT
1 ATATATTAATT
37641641 ATATATTAATT
1 ATATATTAATT
37641652 ATAT-TTATATT
1 ATATATTA-ATT
37641663 AT
1 AT
37641665 TGTTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 3 0.13
11 20 0.87
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATATTAATT
Found at i:37641659 original size:31 final size:31
Alignment explanation
Indices: 37641588--37641659 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 31
37641578 TTTATTTCAC
*
37641588 TATATTTATCTATTATATTATTATACATTTT
1 TATATTTATCTATTATATTATTATACATTAT
* *
37641619 TAATCTTTATC-A-TATATTAATTATATATTAAT
1 T-ATATTTATCTATTATATT-ATTATACATT-AT
37641651 TATATTTAT
1 TATATTTAT
37641660 ATTATTGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 6 0.18
31 18 0.53
32 10 0.29
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (31 bp):
TATATTTATCTATTATATTATTATACATTAT
Found at i:37641665 original size:9 final size:9
Alignment explanation
Indices: 37641631--37641734 Score: 53
Period size: 9 Copynumber: 11.9 Consensus size: 9
37641621 ATCTTTATCA
*
37641631 TATATTAAT
1 TATATTATT
37641640 TATA-TATT
1 TATATTATT
*
37641648 AAT-TATATT
1 TATAT-TATT
37641657 TATATTATT
1 TATATTATT
* * *
37641666 GTTTTTTAGTA
1 -TATATTA-TT
37641677 TATATTATT
1 TATATTATT
37641686 TCATA-TA--
1 T-ATATTATT
*
37641693 T-TATTAGT
1 TATATTATT
37641701 TATATTATT
1 TATATTATT
37641710 TATATTATT
1 TATATTATT
37641719 GTATATT-TT
1 -TATATTATT
37641728 TAT-TTAT
1 TATATTAT
37641735 AAATTTAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
5 2 0.03
6 2 0.03
7 3 0.04
8 10 0.14
9 35 0.48
10 20 0.27
11 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (9 bp):
TATATTATT
Found at i:37655954 original size:39 final size:39
Alignment explanation
Indices: 37655875--37655965 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
37655865 TGCATGGTAT
* * * *
37655875 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCAGACTTAAAGTCCGCAGGCATAATGC
*
37655914 TGGAAATATATCCAGACTTAAAGTCCGCAGG-ATAAGTGC
1 TGGAAAAATATCCAGACTTAAAGTCCGCAGGCATAA-TGC
37655953 TGGAAAAATATCC
1 TGGAAAAATATCC
37655966 GGGCTAAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.04
39 43 0.96
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (39 bp):
TGGAAAAATATCCAGACTTAAAGTCCGCAGGCATAATGC
Found at i:37656003 original size:39 final size:39
Alignment explanation
Indices: 37655960--37656175 Score: 342
Period size: 39 Copynumber: 5.5 Consensus size: 39
37655950 TGCTGGAAAA
*
37655960 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
37655999 ATATCCGGGCTAAGTCCTAAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
37656038 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
37656077 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
37656116 ATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
37656155 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
37656176 CATGCTTTGT
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 153 0.94
40 1 0.01
41 8 0.05
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:37658145 original size:206 final size:206
Alignment explanation
Indices: 37657813--37658289 Score: 679
Period size: 206 Copynumber: 2.3 Consensus size: 206
37657803 TATACTAAAG
* * * *
37657813 CAAGATCCAAGGTGATTTGGCATCCTTGTGCTTACAAGGACCAAATCAAAGACATAGCTGATTTG
1 CAAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTG
* *
37657878 GCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTTTATTGTCAGAGAACA
66 GCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACA
* * * * *
37657943 AATTGAAGTCTAGCATCTCCA-CTTCAACGG-GGAGTAGATACATAGCAGATCTCACCTTCAGAT
131 AATCGAAGTCTAGCATCTCCATATTCAACGGAGG-GCAGACACATAGCAGATCTAACCTTCAGAT
*
37658006 AATTCCACTGAAA
195 AATTACACTG-AA
37658019 CAAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTG
1 CAAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTG
*
37658084 GCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACA
66 GCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACA
* * ** * *
37658149 AATCGAAGTTTGGGGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATG
131 AATCGAAGTCTAGCATCTCCATATTCAACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATA
* *
37658214 TTTATACTGAA
196 ATTACACTGAA
** * * * *
37658225 GTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATGGCAGATTTG
1 CAAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTG
37658290 ACTCTCGGAT
Statistics
Matches: 242, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
206 200 0.83
207 40 0.17
208 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (206 bp):
CAAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTG
GCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACA
AATCGAAGTCTAGCATCTCCATATTCAACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATA
ATTACACTGAA
Found at i:37659940 original size:15 final size:15
Alignment explanation
Indices: 37659920--37659949 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37659910 CTTTACTTAT
37659920 AAATTTATTTATTTA
1 AAATTTATTTATTTA
37659935 AAATTTATTTATTTA
1 AAATTTATTTATTTA
37659950 TTTAGTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
AAATTTATTTATTTA
Found at i:37659962 original size:19 final size:19
Alignment explanation
Indices: 37659917--37659962 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37659907 CCCCTTTACT
*
37659917 TATAAATTTATTTATTTAA
1 TATATATTTATTTATTTAA
* * *
37659936 AATTTATTTATTTATTTAG
1 TATATATTTATTTATTTAA
37659955 TATATATT
1 TATATATT
37659963 AATATTTTAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATTTATTTATTTAA
Found at i:37660314 original size:9 final size:9
Alignment explanation
Indices: 37660291--37660331 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
37660281 TTTCATATAT
*
37660291 TATTAGTTA
1 TATTATTTA
37660300 TATTATTTA
1 TATTATTTA
37660309 TATTATTGTA
1 TATTATT-TA
37660319 TATT-TTTA
1 TATTATTTA
37660327 T-TTAT
1 TATTAT
37660332 AAATTTAGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
7 2 0.07
8 4 0.14
9 17 0.59
10 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (9 bp):
TATTATTTA
Found at i:37661153 original size:23 final size:24
Alignment explanation
Indices: 37661109--37661154 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
37661099 ATATGTAAAA
* *
37661109 CATATCATTTTTTAAACCAAAAGT
1 CATATCATTATTTAAACAAAAAGT
*
37661133 CATATC-TTATTTAAATAAAAAG
1 CATATCATTATTTAAACAAAAAG
37661155 GAACTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (24 bp):
CATATCATTATTTAAACAAAAAGT
Found at i:37662385 original size:38 final size:38
Alignment explanation
Indices: 37662334--37662409 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
37662324 ATAGCAGAGT
37662334 CGGCTAGTAAGAAAGGAAAAGCACGAAGTTTAATTTGG
1 CGGCTAGTAAGAAAGGAAAAGCACGAAGTTTAATTTGG
37662372 CGGCTAGTAAGAAAGGAAAAGCACGAAGTTTAATTTGG
1 CGGCTAGTAAGAAAGGAAAAGCACGAAGTTTAATTTGG
37662410 TCTTCGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.21
Consensus pattern (38 bp):
CGGCTAGTAAGAAAGGAAAAGCACGAAGTTTAATTTGG
Found at i:37664018 original size:6 final size:5
Alignment explanation
Indices: 37663965--37664032 Score: 100
Period size: 5 Copynumber: 13.0 Consensus size: 5
37663955 TAAATAATTT
*
37663965 AATAA AATAA AATAA AATAA AATAA AATAA ACTAA AATAA AATGAA AATAAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA
37664017 AATAAA AATAA AATAA
1 AAT-AA AATAA AATAA
37664033 TATATTCCTA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
5 43 0.73
6 16 0.27
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:37676637 original size:38 final size:38
Alignment explanation
Indices: 37676590--37676828 Score: 286
Period size: 38 Copynumber: 6.3 Consensus size: 38
37676580 AATCTAATGC
* * *
37676590 TATTTGGGCTATGTGCCTAGTAGGCTGTGTGCCGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
**
37676628 TATTCGGGCTGAT-TGCCTAGCAGGCTTTGTGCTAGTGA
1 TATTCGGGCT-ATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * ** *
37676666 TATTCGGGCT-TGTGCCAAGAAAACTTTGTGCCGATGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* *
37676703 TATTCGGGCTGTGTGCCTAGCAGGCTTTGTGCCGGAGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* *
37676741 TATTCGGGCTGTGTGCCTAGCAGGCTTTGTGCTGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * *
37676779 TATAT-AGGCTATGTGCCTAGTAGGCTGTGTGCCGGTGA
1 TAT-TCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
37676817 TATTCGGGCTAT
1 TATTCGGGCTAT
37676829 TCGGGCTATG
Statistics
Matches: 170, Mismatches: 26, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
36 1 0.01
37 29 0.17
38 137 0.81
39 3 0.02
ACGTcount: A:0.16, C:0.18, G:0.33, T:0.33
Consensus pattern (38 bp):
TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
Found at i:37678439 original size:239 final size:238
Alignment explanation
Indices: 37678008--37678484 Score: 792
Period size: 239 Copynumber: 2.0 Consensus size: 238
37677998 ATGTGCAAAG
* * *
37678008 GAGTATTTATTTTGCTGTTTGAGCTGTGTAGGAGGTGGAGTTGGACTGGAACTCTGTGGTTGAAG
1 GAGTATTTATTTTGCTATTTGAGCTGTGTAGGAAGTGGAGTTGGACTGAAACTCTGTGGTTGAAG
* *
37678073 TGGTCATAAGAAAATAAGGAATTTTCCTAATGGTTGAAAGTAATCCCACATCTGGAAGCTAACAT
66 TGGTCAAAAGAAAATAAGGAATTTTCCTAATGGTTGAAAGTAATCCCACATCGGGAAGCTAACAT
* * *
37678138 GGTAATTGGTGAGAAGCGGGCTTTAAATAGAGCGAACTAGATGAGTTGGTAGGGGAAAAAAAGGG
131 GGGAATTAGTGAGAAGCGGGCTTTAAATAGAGCGAACCAGATGAGTTGGTAGGGGAAAAAAA-GG
*
37678203 GATTAAGACCAAATGTAGAATGTGCCAAGGATGGTGATCGTGGA
195 GATTAAGACCAAATGTAGAATGTGCCAAGGATGGCGATCGTGGA
37678247 GAGTATTTATTTTGCTATTTGAGCTGTGTAGGAAGTGGAGTTGGACTGAAACTCTGTGGTTGAAG
1 GAGTATTTATTTTGCTATTTGAGCTGTGTAGGAAGTGGAGTTGGACTGAAACTCTGTGGTTGAAG
* *
37678312 TGGTCAAAAGAAAATAAGGAATTTTCTTAATGGTTGAAAGTAATCCCACATCGGGAAGGTAACAT
66 TGGTCAAAAGAAAATAAGGAATTTTCCTAATGGTTGAAAGTAATCCCACATCGGGAAGCTAACAT
* * *
37678377 GGGAATTAGTGAGAAGCTGGCTTTAAATAGAGCGAACCAGATGAGTTGGTGGGGGGAAAAAAGGG
131 GGGAATTAGTGAGAAGCGGGCTTTAAATAGAGCGAACCAGATGAGTTGGTAGGGGAAAAAAAGGG
* * *
37678442 ATTAAGACCCAATGTAGGATGTGCCAAGGTTGGCGATCGTGGA
196 ATTAAGACCAAATGTAGAATGTGCCAAGGATGGCGATCGTGGA
37678485 CTACTTCGGC
Statistics
Matches: 221, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
238 42 0.19
239 179 0.81
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (238 bp):
GAGTATTTATTTTGCTATTTGAGCTGTGTAGGAAGTGGAGTTGGACTGAAACTCTGTGGTTGAAG
TGGTCAAAAGAAAATAAGGAATTTTCCTAATGGTTGAAAGTAATCCCACATCGGGAAGCTAACAT
GGGAATTAGTGAGAAGCGGGCTTTAAATAGAGCGAACCAGATGAGTTGGTAGGGGAAAAAAAGGG
ATTAAGACCAAATGTAGAATGTGCCAAGGATGGCGATCGTGGA
Found at i:37679308 original size:40 final size:38
Alignment explanation
Indices: 37679264--37679359 Score: 102
Period size: 40 Copynumber: 2.5 Consensus size: 38
37679254 ACGGTACAAT
** * *
37679264 TTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAGGGTTGGATAAGTCGATTCTATCCCC--AC
* *
37679304 TTGGTGTGTAGGGCTGGGTAAGTCGATTCTATCCCCAC
1 TTGGTGTGTAGGGTTGGATAAGTCGATTCTATCCCCAC
* *
37679342 ATGGTGTGTTGGGTTGGA
1 TTGGTGTGTAGGGTTGGA
37679360 CAGAGATGGT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
38 16 0.35
40 30 0.65
ACGTcount: A:0.15, C:0.14, G:0.35, T:0.36
Consensus pattern (38 bp):
TTGGTGTGTAGGGTTGGATAAGTCGATTCTATCCCCAC
Found at i:37681516 original size:27 final size:27
Alignment explanation
Indices: 37681485--37681567 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 27
37681475 AGATATTTTG
*
37681485 ATATTTTATAATTATTTAATTAGATAA
1 ATATTTTATTATTATTTAATTAGATAA
*
37681512 ATATTATT-TTATTA-TTATTTTA-ATAA
1 ATATT-TTATTATTATTTA-ATTAGATAA
*
37681538 GATATTTTATTATTATTTTATTAGTATAA
1 -ATATTTTATTATTATTTAATTAG-ATAA
37681567 A
1 A
37681568 AAGAAAGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
26 9 0.20
27 27 0.60
28 5 0.11
29 4 0.09
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATTTTATTATTATTTAATTAGATAA
Found at i:37681527 original size:11 final size:11
Alignment explanation
Indices: 37681513--37681560 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
37681503 ATTAGATAAA
37681513 TATTATTTTAT
1 TATTATTTTAT
37681524 TATTATTTTAAT
1 TATTATTTT-AT
* *
37681536 AAGATATTTTAT
1 TA-TTATTTTAT
37681548 TATTATTTTAT
1 TATTATTTTAT
37681559 TA
1 TA
37681561 GTATAAAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 19 0.61
12 6 0.19
13 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:37683248 original size:33 final size:33
Alignment explanation
Indices: 37683200--37683276 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
37683190 ATCCTGATGA
* * * *
37683200 TAAGACCATATCTGGGATATGGCACTACGA-GTG
1 TAAGACCATAGCTGGGACATGACAATAC-ATGTG
* *
37683233 TAAGACCATGGCTGGGCCATGACAATACATGTG
1 TAAGACCATAGCTGGGACATGACAATACATGTG
37683266 TAAGACCATAG
1 TAAGACCATAG
37683277 TTGGATTATG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 1 0.03
33 35 0.97
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (33 bp):
TAAGACCATAGCTGGGACATGACAATACATGTG
Found at i:37683411 original size:46 final size:46
Alignment explanation
Indices: 37683351--37683601 Score: 371
Period size: 46 Copynumber: 5.5 Consensus size: 46
37683341 TTCAGATATG
* * *
37683351 TAAGACCATAGTTGAAAGATACTATGGCAATATGATGA-GAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGA-GAGGAAATGAA
* * *
37683397 TAAGACCATGGTTGAAAGATACCGTGGCAACATGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAGAGGAAATGAA
* **
37683443 TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGGAAACAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAGAGGAAATGAA
37683489 TAAGACCATGGTTGAAAGATACCATGGCAACATG-GCAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAG-AGGAAATGAA
* *
37683535 TAAGACCATGGTTGAAAGATACCATGGCAACATGAAAGGAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAGAGGAAATGAA
37683581 TAAGACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATA
37683602 TAAATGAATA
Statistics
Matches: 187, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 1 0.01
46 186 0.99
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGAGAGGAAATGAA
Found at i:37683969 original size:17 final size:17
Alignment explanation
Indices: 37683927--37683970 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
37683917 AATATATGGA
37683927 AATGATAATACATGAAAT
1 AATGAT-ATACATGAAAT
*
37683945 ATTGATATA-ATGAAAT
1 AATGATATACATGAAAT
37683961 GAATGATATA
1 -AATGATATA
37683971 TGCTTATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.32
Consensus pattern (17 bp):
AATGATATACATGAAAT
Found at i:37689892 original size:38 final size:38
Alignment explanation
Indices: 37689837--37690175 Score: 383
Period size: 38 Copynumber: 8.9 Consensus size: 38
37689827 AATGTAATGT
* * * *
37689837 TATTCGGGCTATATGCCTAGCAGGCTGTATGCCGATGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
*
37689875 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGT
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * *
37689913 TATTCGGGCTATGTACCTAGCAAGCTTTATGCCGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * *
37689951 TATTTGGGCTTTGTGCCTAGC-GGACTTTGTACCGGTGA
1 TATTCGGGCTATGTGCCTAGCAGG-CTTTGTGCCGGTGA
* **
37689989 TATTCGGGCTGTGTGCCTAGCAAACTTTGTGCCGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * * ***
37690027 TATTTGGGCTGTGTGCCTAGTAGGCTTTGTGCTAATGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* *
37690065 TATTCGGGCTATGTGCCTAGCACGCTTTGTGCTGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * * * *
37690103 TATACAGGCTATGTGCCTAGTAGGCTGTGTCCCGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* ** *
37690141 TATTCAGGCTATGTATCTAGCAGGCTGTGTGCCGG
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGG
37690176 GGTTTTTCAA
Statistics
Matches: 254, Mismatches: 45, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
37 1 0.00
38 253 1.00
ACGTcount: A:0.16, C:0.20, G:0.31, T:0.33
Consensus pattern (38 bp):
TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
Found at i:37698119 original size:21 final size:21
Alignment explanation
Indices: 37698093--37698151 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
37698083 GTGTGCCCTT
*
37698093 TCCACACAGGTGTGTAGGGCC
1 TCCACACAGGCGTGTAGGGCC
* * *
37698114 TTCACACGGGCGTGTATGGCC
1 TCCACACAGGCGTGTAGGGCC
**
37698135 TCCACATGGGCGTGTAG
1 TCCACACAGGCGTGTAG
37698152 ACACCTACAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.17, C:0.27, G:0.34, T:0.22
Consensus pattern (21 bp):
TCCACACAGGCGTGTAGGGCC
Found at i:37699876 original size:26 final size:27
Alignment explanation
Indices: 37699823--37699876 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
37699813 TGAGTTAATA
*
37699823 AATTCTCTTTAAGTTTCTCTTTTCAAG
1 AATTCTCTTTAAGTTTCTCTTTACAAG
*
37699850 AATT-TCTTCTAAGTTTCT-TTTAGAAG
1 AATTCTCTT-TAAGTTTCTCTTTACAAG
37699876 A
1 A
37699877 GTTTTTAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50
Consensus pattern (27 bp):
AATTCTCTTTAAGTTTCTCTTTACAAG
Found at i:37700102 original size:14 final size:13
Alignment explanation
Indices: 37700079--37700120 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
37700069 TAATATTTGA
37700079 TTTATTATTTTAT
1 TTTATTATTTTAT
37700092 TTTATT-TATTTAT
1 TTTATTAT-TTTAT
*
37700105 TTTAATTGTTTTAT
1 TTT-ATTATTTTAT
37700119 TT
1 TT
37700121 GACTTGGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 1 0.04
13 14 0.54
14 10 0.38
15 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:37700117 original size:18 final size:18
Alignment explanation
Indices: 37700078--37700120 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
37700068 CTAATATTTG
*
37700078 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTGT
37700095 ATTTATTTATTTTAATTGT
1 ATTTATTTATTTT-ATTGT
37700114 -TTTATTT
1 ATTTATTT
37700121 GACTTGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 5 0.22
18 14 0.61
19 4 0.17
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (18 bp):
ATTTATTTATTTTATTGT
Found at i:37700488 original size:16 final size:17
Alignment explanation
Indices: 37700469--37700514 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
37700459 AAAGTGATTG
*
37700469 AAAAAT-TGCAAAAAAT
1 AAAAATATGAAAAAAAT
37700485 -AAAATATGAAAAAAAT
1 AAAAATATGAAAAAAAT
*
37700501 AAAAAAAT-AAAAAA
1 AAAAATATGAAAAAA
37700515 TTTCTATGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (17 bp):
AAAAATATGAAAAAAAT
Found at i:37704497 original size:48 final size:48
Alignment explanation
Indices: 37704373--37704507 Score: 164
Period size: 48 Copynumber: 2.8 Consensus size: 48
37704363 TGTCTCATAT
* **
37704373 CAATGCCATGTCCCAGACACGATCTTACACT-AAATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGATCTTACA-TGGGATCACATATCGATGC
* * * *
37704421 CAATGCCATATCCCAGATATGCTATTACATGGGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATCGATGC
* * *
37704469 TAATTCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 CAATGCCATGTCCCAGACATGATCTTACATGGGATCACA
37704508 CATACCCTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 72 0.99
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATCGATGC
Found at i:37705986 original size:93 final size:93
Alignment explanation
Indices: 37705876--37706046 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37705866 GCCACTAAGT
* *
37705876 GAACTCAGACTCAACTCAACGAGCTT-GGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCA
*
37705940 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* * *
37705969 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGATTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
37706034 CGAGCTCGGATGC
66 CGAGCTCGGATGC
37706047 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:37706043 original size:46 final size:46
Alignment explanation
Indices: 37705871--37706043 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
37705861 AACCCGCCAC
* * * *
37705871 TAAGTGAACTCAGACTCAACTCAACGAGCTTGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
37705917 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
37705965 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
37706010 TAAGTGAACTCGGATTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37706044 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.54
47 29 0.28
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:37713583 original size:93 final size:91
Alignment explanation
Indices: 37713426--37713594 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 91
37713416 GCCCCTAAGT
*
37713426 GAACTCGGACTCAACTCAACGAGCTCGGCATTGCATCCATAAATGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGACATTGCATCCATAAATGAACTCGGACTCAACTCAACG
*
37713491 AGTTCGGATGCCTAGTTACATCTCAC
66 AGCTCGGATGCCTAGTTACATCTCAC
* *
37713517 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAATTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-GACA-TTGCATCCATAAATGAACTCGGACTCAACTCAA
37713582 CGAGCTCGGATGC
64 CGAGCTCGGATGC
37713595 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 25 0.35
92 3 0.04
93 44 0.61
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGACATTGCATCCATAAATGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCAC
Found at i:37716125 original size:49 final size:50
Alignment explanation
Indices: 37716053--37716182 Score: 201
Period size: 52 Copynumber: 2.6 Consensus size: 50
37716043 CTAGTGACTC
37716053 AAGTGTGGTACTATGTGAAGGCCACTTTGAA-AAGAGATAG-ATTGGTCAA
1 AAGTGTGGTACTATGTGAAGGCCACTTTGAAGAA-AGATAGCATTGGTCAA
* *
37716102 AAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAAAGATAGCTTTGGTCAC
1 AAGTGTGGTACTATGTGAAGGCCAC--TTTGAAGAAAGATAGCATTGGTCAA
37716154 AAGTGTGGTACTATGTGAAGGCCACTTTG
1 AAGTGTGGTACTATGTGAAGGCCACTTTG
37716183 TGAAGAAGGT
Statistics
Matches: 75, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
49 25 0.33
50 4 0.05
51 12 0.16
52 34 0.45
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.29
Consensus pattern (50 bp):
AAGTGTGGTACTATGTGAAGGCCACTTTGAAGAAAGATAGCATTGGTCAA
Found at i:37716172 original size:52 final size:52
Alignment explanation
Indices: 37716052--37716229 Score: 233
Period size: 51 Copynumber: 3.5 Consensus size: 52
37716042 ACTAGTGACT
*
37716052 CAAGTGTGGTACTATGTGAAGGCCAC--TTTGAA-AAGAGATAG-ATTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAA-AGATAGCTTTGGTCA
*
37716101 AAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAAAGATAGCTTTGGTCA
* * *
37716153 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAAAGATAGCTTTGGTC-A
* *
37716204 CAAGAGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
37716230 CGGGTATCCG
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
49 25 0.22
50 2 0.02
51 47 0.41
52 42 0.36
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGAAAGATAGCTTTGGTCA
Found at i:37722050 original size:43 final size:43
Alignment explanation
Indices: 37721953--37722066 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
37721943 ACCAAGATGT
* * * *
37721953 GATTACATGTAAGACCATGTCTGGGACATTGGTATTGTATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
37721996 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAATGC
* * *
37722039 GATTTCGTGTAAGA-CACTGCCTGGGACA
1 GATTACATGTAAGACCA-TGTCTGGGACA
37722067 GTGACATCCA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.03
43 57 0.92
44 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
Found at i:37723094 original size:18 final size:18
Alignment explanation
Indices: 37723071--37723141 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
37723061 AGGACGTGTC
*
37723071 ATTCATTTTCAAAACGTA
1 ATTCATTTTCAAAACGTT
*
37723089 ATTCATTATCACAAA-GTT
1 ATTCATTTTCA-AAACGTT
* *
37723107 ATTC-TCTTCAAAAATGTT
1 ATTCATTTTC-AAAACGTT
*
37723125 ATTAATTTTCAAAACGT
1 ATTCATTTTCAAAACGT
37723142 CACTTATTGC
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
17 6 0.14
18 29 0.69
19 7 0.17
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (18 bp):
ATTCATTTTCAAAACGTT
Found at i:37724046 original size:30 final size:30
Alignment explanation
Indices: 37724005--37724063 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
37723995 CCCGTGCAAC
* *
37724005 TAAGCATCAAAACAGTGAAAATGGGCCCAT
1 TAAGCAACAAAACAGTGAAAATAGGCCCAT
*
37724035 TAAGCAACAAAACTGTGAAAATAGGCCCA
1 TAAGCAACAAAACAGTGAAAATAGGCCCA
37724064 CATGCCCGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (30 bp):
TAAGCAACAAAACAGTGAAAATAGGCCCAT
Found at i:37731531 original size:42 final size:42
Alignment explanation
Indices: 37731466--37731616 Score: 122
Period size: 48 Copynumber: 3.3 Consensus size: 42
37731456 TAGCCCAGCT
* ** *
37731466 ATGGTCTTACACGATGTCTCATATTGATGCCATGTCCCAGAC
1 ATGGTCTTACATGAAATCACATATTGATGCCATGTCCCAGAC
* * *
37731508 ATGGTCTTACATGAAATCACATATCGATGCCAACACCATATCCCAGAT
1 ATGGTCTTACATGAAATCACATATTGATG------CCATGTCCCAGAC
*
37731556 ATGGTCTTACATGGAATCACATATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGAAATCACATAT---TG---ATGCCATGTCCCAGAC
37731604 ATGGTCTTACATG
1 ATGGTCTTACATG
37731617 GGATCACACA
Statistics
Matches: 86, Mismatches: 11, Indels: 18
0.75 0.10 0.16
Matches are distributed among these distances:
42 24 0.28
48 58 0.67
51 1 0.01
54 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACATGAAATCACATATTGATGCCATGTCCCAGAC
Done.