Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 147 of 325
Found at i:46682884 original size:10 final size:10
Alignment explanation
Indices: 46682862--46682896 Score: 56
Period size: 9 Copynumber: 3.7 Consensus size: 10
46682852 AATTTAAAAG
46682862 AAAAAATAG-
1 AAAAAATAGA
46682871 AAAAAATAGA
1 AAAAAATAGA
46682881 AAAAAATA-A
1 AAAAAATAGA
46682890 AAAAAAT
1 AAAAAAT
46682897 TAAAATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (10 bp):
AAAAAATAGA
Found at i:46682900 original size:10 final size:9
Alignment explanation
Indices: 46682862--46682901 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
46682852 AATTTAAAAG
*
46682862 AAAAAATAG
1 AAAAAATAA
46682871 AAAAAATAGA
1 AAAAAATA-A
46682881 AAAAAATAA
1 AAAAAATAA
46682890 AAAAAATTAA
1 AAAAAA-TAA
46682900 AA
1 AA
46682902 TTAAACAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 15 0.54
10 13 0.46
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:46684593 original size:23 final size:23
Alignment explanation
Indices: 46684561--46684604 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
46684551 GCAATCTACT
46684561 GACTAATTGTTTTTGCTTAAGAG
1 GACTAATTGTTTTTGCTTAAGAG
* *
46684584 GACTACTTGTTTTTGTTTAAG
1 GACTAATTGTTTTTGCTTAAG
46684605 CAGATCCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (23 bp):
GACTAATTGTTTTTGCTTAAGAG
Found at i:46687951 original size:40 final size:40
Alignment explanation
Indices: 46687714--46687937 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
46687704 TGAATGATGT
* * * * *
46687714 CCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
46687754 CCGGACTAAGAT-CCGAAGGAATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
46687794 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46687832 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
46687873 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46687913 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46687938 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:46687959 original size:119 final size:119
Alignment explanation
Indices: 46687713--46687970 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
46687703 TTGAATGATG
* * *
46687713 TCCGGGCTAAGTCCCGAAGGTTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGAATTT
1 TCCGGGTTAAGTCCCGAAGGATTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGAATTT
* **
46687778 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * * *
46687832 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGAAT
* * *
46687895 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
46687952 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46687971 TACGTGATTC
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGATTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGAATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:46695881 original size:39 final size:40
Alignment explanation
Indices: 46695780--46696022 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
46695770 TTGAATGATG
* * *
46695780 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
46695820 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
46695859 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
46695899 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
46695939 ACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
46695978 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
46696018 TCCGG
1 TCCGG
46696023 TTAAATTCCG
Statistics
Matches: 180, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
39 75 0.42
40 97 0.54
41 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:46695916 original size:79 final size:79
Alignment explanation
Indices: 46695780--46696022 Score: 289
Period size: 79 Copynumber: 3.1 Consensus size: 79
46695770 TTGAATGATG
* * * * *
46695780 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
46695843 TTGTGCGAGTTACTA-A
63 TTGTGCGAGTTACTATA
* *
46695859 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
46695924 GTGCGAGTTACTATA
65 GTGCGAGTTACTATA
* * *
46695939 ACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
**
46696003 GAACGAG-TAGCTATA
65 GTGCGAGTTA-CTATA
46696018 TCCGG
1 TCCGG
46696023 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
78 3 0.02
79 120 0.84
80 20 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:46697777 original size:43 final size:43
Alignment explanation
Indices: 46697665--46697831 Score: 182
Period size: 43 Copynumber: 3.9 Consensus size: 43
46697655 TTTAGAGTTC
* *
46697665 ATGATTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCT
1 ATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGT-T
* *
46697709 -TG-TCTTTAGTGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTT
1 ATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTT
* * * *
46697750 ATGATTTTTAGCGGCGTTT-TCGGGAAAAGCGCTGCTAAAGGTC
1 ATGATCTTTAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAAGGTT
*
46697793 ATGGA-CTTTAGCGGCGTTTGT-AAAAAGAGCGCCGCTAAA
1 AT-GATCTTTAGCGGCGTTTGTGAGAAA-AGCGCCGCTAAA
46697832 AGTCTGTTCT
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 40 0.38
43 60 0.58
44 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
ATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTT
Found at i:46697892 original size:28 final size:28
Alignment explanation
Indices: 46697861--46697922 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
46697851 GCCTCTTTAG
* * *
46697861 GCCCAATCTCGTTCACATGGCCTATCAA
1 GCCCAATCACATTCACATGGCCCATCAA
*
46697889 GCCCAATCACATTCATATGGCCCATCAA
1 GCCCAATCACATTCACATGGCCCATCAA
46697917 GCCCAA
1 GCCCAA
46697923 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.37, G:0.13, T:0.21
Consensus pattern (28 bp):
GCCCAATCACATTCACATGGCCCATCAA
Found at i:46700295 original size:11 final size:11
Alignment explanation
Indices: 46700279--46700304 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46700269 CGAAGTCCAC
46700279 ATCACAATAAT
1 ATCACAATAAT
46700290 ATCACAATAAT
1 ATCACAATAAT
46700301 ATCA
1 ATCA
46700305 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:46700806 original size:27 final size:28
Alignment explanation
Indices: 46700776--46701222 Score: 272
Period size: 27 Copynumber: 16.7 Consensus size: 28
46700766 TTTACCCTAT
*
46700776 AGGGGTATGTCGGTAATTTCAC-AATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
** *
46700803 A-GGGTATTTCTATAATTTTACAAATC-
1 AGGGGTATTTCGGTAATTTCACAAATCG
* * *
46700829 AGGGGTATTTTGGTAATTTTAAAAATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* *
46700857 A-GGGTGTTTCAGTAATTTCACAAATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* * * * * *
46700884 -GTGGCATTTAGATTATTTTACAAATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* * *
46700911 A-GGGTATTTCAGTAACTTCAC-AATTG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* * *
46700937 A-GTGTATTTCGGTAGTTTTACAAATC-
1 AGGGGTATTTCGGTAATTTCACAAATCG
* * * * *
46700963 AAGGGTGTTTCGATAATTTTACTAATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* * *
46700991 A-GGGTGTTTCGATAATTTCACAAATTG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* *
46701018 -GGGGTATTTTGATGAATTT-ACAAATCG
1 AGGGGTATTTCGGT-AATTTCACAAATCG
** * *
46701045 A-GGGTATTTTAGTAATTTC-CCAATCT
1 AGGGGTATTTCGGTAATTTCACAAATCG
* *
46701071 A-CGGTATTTCGGTAATTTTACAAATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
**
46701098 A-GGGTATTTTAGTAATTTCAC-AATC-
1 AGGGGTATTTCGGTAATTTCACAAATCG
* **
46701123 AAGGGTATTTTAGTAATTTCAC-AATC-
1 AGGGGTATTTCGGTAATTTCACAAATCG
** * *
46701149 AATGGTATTTCGATAATTTTACAAATCG
1 AGGGGTATTTCGGTAATTTCACAAATCG
* *
46701177 -GGGGTATTTCAGTAATTTTACAAATC-
1 AGGGGTATTTCGGTAATTTCACAAATCG
* **
46701203 AAGGGTATTTTAGTAATTTC
1 AGGGGTATTTCGGTAATTTC
46701223 TCTTTATTAT
Statistics
Matches: 330, Mismatches: 73, Indels: 34
0.76 0.17 0.08
Matches are distributed among these distances:
25 1 0.00
26 108 0.33
27 214 0.65
28 7 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (28 bp):
AGGGGTATTTCGGTAATTTCACAAATCG
Found at i:46700833 original size:53 final size:54
Alignment explanation
Indices: 46700776--46701222 Score: 326
Period size: 54 Copynumber: 8.4 Consensus size: 54
46700766 TTTACCCTAT
*
46700776 AGGGGTATGTCGGTAATTTCAC-AATCGAGGGTATTTCTA-TAATTTTACAAATC
1 AGGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTC-AGTAATTTTACAAATC
* * * * *
46700829 AGGGGTATTTTGGTAATTTTAAAAATCGAGGGTGTTTCAGTAATTTCACAAATC
1 AGGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATC
* * * * * * * * *
46700883 -GGTGGCATTTAGATTATTTTACAAATCGAGGGTATTTCAGTAACTTCACAATTG
1 AGG-GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATC
* * * * * *
46700937 A-GTGTATTTCGGTAGTTTTACAAATCAAGGGTGTTTC-GATAATTTTACTAATC
1 AGGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAG-TAATTTTACAAATC
* * * * *
46700990 -GAGGGTGTTTCGATAATTTCACAAATTGGGGGTATTT-TGATGAA-TTTACAAATC
1 AG-GGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAG-T-AATTTTACAAATC
** * * * *
46701044 -GAGGGTATTTTAGTAATTTC-CCAATCTACGGTATTTCGGTAATTTTACAAATC
1 AG-GGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATC
** * * *
46701097 -GAGGGTATTTTAGTAATTTCAC-AATCAAGGGTATTTTAGTAATTTCAC-AATC
1 AG-GGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATC
** * * *
46701149 AATGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAATC
1 AGGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATC
* **
46701203 AAGGGTATTTTAGTAATTTC
1 AGGGGTATTTCGGTAATTTC
46701223 TCTTTATTAT
Statistics
Matches: 311, Mismatches: 68, Indels: 29
0.76 0.17 0.07
Matches are distributed among these distances:
52 22 0.07
53 142 0.46
54 145 0.47
55 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATC
Found at i:46701007 original size:134 final size:131
Alignment explanation
Indices: 46700778--46701199 Score: 456
Period size: 134 Copynumber: 3.2 Consensus size: 131
46700768 TACCCTATAG
* * * ** * *
46700778 GGGTATGTCGGTAATTTCACAATCGAGGGTATTTCTATAATTTTACAAATCAGGGGTATTTTGGT
1 GGGTATTTCAGTAATTTCACAATTGA-GGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTGAT
* * *
46700843 AATTTTAAAAATCGAGGGTGTTTCAGTAATTTCACAAATCGGTGGCATTTAGATTATTTTACAAA
64 AATTTT-ACAATCGAGGGTGTTTCAGTAATTTCACAAATCGGTGGTATTTAGATAATTTTACAAA
46700908 TCGA
128 TCGA
* * *
46700912 GGGTATTTCAGTAACTTCACAATTGAGTGTATTTCGGTAGTTTTACAAATCAAGGGTGTTTCGAT
1 GGGTATTTCAGTAATTTCACAATTGAG-GTATTTCGGTAATTTTACAAATCAAGGGTATTT-GAT
* * *
46700977 AATTTTACTAATCGAGGGTGTTTC-GATAATTTCACAAATTGGGGGTATTTTGATGAA-TTTACA
64 AATTTTAC-AATCGAGGGTGTTTCAG-TAATTTCACAAATCGGTGGTATTTAGAT-AATTTTACA
46701040 AATCGA
126 AATCGA
* * * *
46701046 GGGTATTTTAGTAATTTCCCAATCT-ACGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG
1 GGGTATTTCAGTAATTTCACAAT-TGA-GGTATTTCGGTAATTTTACAAATCAAGGGTATTTGA-
* * * * ** *
46701110 TAATTTCACAATCAAGGGTATTTTAGTAATTTCAC-AATCAATGGTATTTCGATAATTTTACAAA
63 TAATTTTACAATCGAGGGTGTTTCAGTAATTTCACAAATCGGTGGTATTTAGATAATTTTACAAA
*
46701174 TCGG
128 TCGA
*
46701178 GGGTATTTCAGTAATTTTACAA
1 GGGTATTTCAGTAATTTCACAA
46701200 ATCAAGGGTA
Statistics
Matches: 242, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
131 2 0.01
132 43 0.18
133 28 0.12
134 166 0.69
135 3 0.01
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (131 bp):
GGGTATTTCAGTAATTTCACAATTGAGGTATTTCGGTAATTTTACAAATCAAGGGTATTTGATAA
TTTTACAATCGAGGGTGTTTCAGTAATTTCACAAATCGGTGGTATTTAGATAATTTTACAAATCG
A
Found at i:46705750 original size:141 final size:141
Alignment explanation
Indices: 46705480--46705760 Score: 449
Period size: 141 Copynumber: 2.0 Consensus size: 141
46705470 GATTTTATGA
46705480 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * *
46705545 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTTGCATATGTGTGATAAGGCCGA
66 TATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACTTACATATGTGTGAGAAGGCCGA
46705610 ATGGCCAATGT
131 ATGGCCAATGT
46705621 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * *
46705686 TATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTG-GCGAA-GCC
66 TATATGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACT-TACATATGTGTGAGAAGGCC
*
46705749 GAATGGCTAATG
129 GAATGGCCAATG
46705761 CGAAACGTGT
Statistics
Matches: 129, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
141 114 0.88
142 7 0.05
143 8 0.06
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACTTACATATGTGTGAGAAGGCCGA
ATGGCCAATGT
Found at i:46705755 original size:47 final size:47
Alignment explanation
Indices: 46705480--46705720 Score: 446
Period size: 47 Copynumber: 5.1 Consensus size: 47
46705470 GATTTTATGA
46705480 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
46705527 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
46705574 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
46705621 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
46705668 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
46705715 GATGAA
1 GATGAA
46705721 CGTGGAAGTG
Statistics
Matches: 188, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 188 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:46705847 original size:96 final size:96
Alignment explanation
Indices: 46705744--46705920 Score: 309
Period size: 96 Copynumber: 1.8 Consensus size: 96
46705734 ATATGTGGCG
46705744 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCAGAATGGCTAATGCG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCAGAATGGCTAATGCG
*
46705809 AAACGTGTATGAGATGGACGGATATGAGGTA
66 AAACATGTATGAGATGGACGGATATGAGGTA
* *
46705840 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCAGAATGGCTAATGCG
* *
46705905 AGATATGTATGAGATG
66 AAACATGTATGAGATG
46705921 TGTATATATA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.22
Consensus pattern (96 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCAGAATGGCTAATGCG
AAACATGTATGAGATGGACGGATATGAGGTA
Found at i:46705853 original size:50 final size:46
Alignment explanation
Indices: 46705744--46705920 Score: 273
Period size: 46 Copynumber: 3.8 Consensus size: 46
46705734 ATATGTGGCG
46705744 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
*
46705790 AAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGACGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGAT----GGATATGAGGTA
46705840 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * **
46705886 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
46705921 TGTATATATA
Statistics
Matches: 121, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
46 76 0.63
50 45 0.37
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.22
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:46713775 original size:41 final size:40
Alignment explanation
Indices: 46713729--46714020 Score: 282
Period size: 41 Copynumber: 7.2 Consensus size: 40
46713719 CGTAAAAATT
* * *
46713729 CTAAAACATAGAGCAATAGCGGCGTTTTACAAAAAACGCCG
1 CTAAAA-ACAGAGCAATAGCGGCGCTTTACATAAAACGCCG
* ***
46713770 CTAAAAACAGAGCAATAGCGGCGTTTTTTGGTAAAACGCCG
1 CTAAAAACAGAGCAATAGCGGCG-CTTTACATAAAACGCCG
* ***
46713811 CTAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCG
1 CTAAAAACAGAGCAATAGCGGCGCTTTACATAAAACGCCG
* * *
46713851 CTAAAAATCGGAGCATTAGCGGCGCTTTAGATAAAACGCCG
1 CTAAAAA-CAGAGCAATAGCGGCGCTTTACATAAAACGCCG
* *
46713892 CTAAAAACTAGAGCATTAGCGACGCTTT-CGATAAAACGCCG
1 CTAAAAAC-AGAGCAATAGCGGCGCTTTAC-ATAAAACGCCG
* * * * *
46713933 TTAAAAACCAGAGCATTAGCGGCGCTTTCCGTAAAACACCG
1 CTAAAAA-CAGAGCAATAGCGGCGCTTTACATAAAACGCCG
* * *
46713974 CTAAAAACCAAAGCATTAGCGGCGCTTT-CTGTAAAACGCCG
1 CTAAAAA-CAGAGCAATAGCGGCGCTTTAC-ATAAAACGCCG
46714015 CTAAAA
1 CTAAAA
46714021 GTTATATAAC
Statistics
Matches: 224, Mismatches: 20, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
40 42 0.19
41 180 0.80
42 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (40 bp):
CTAAAAACAGAGCAATAGCGGCGCTTTACATAAAACGCCG
Found at i:46713928 original size:82 final size:78
Alignment explanation
Indices: 46713729--46714020 Score: 314
Period size: 82 Copynumber: 3.6 Consensus size: 78
46713719 CGTAAAAATT
* * * ** *
46713729 CTAAAACATAGAGCAATAGCGGCGTTTTACAAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGT
1 CTAAAA-ACAGAGCATTAGCGGCGCTTT-CGTAAAACGCCGCTAAAAACAGAGCATTAGCGGCG-
* *
46713794 TTTTTGGTAAAACGCCG
63 -CTTTAGTAAAACGCCG
* * * *
46713811 CTAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAATCGGAGCATTAGCGGCGC
1 CTAAAAACAGAGCATTAGCGGCG-CTTTCGTAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGC
46713876 TTTAGATAAAACGCCG
64 TTTAG-TAAAACGCCG
* *
46713892 CTAAAAACTAGAGCATTAGCGACGCTTTCGATAAAACGCCGTTAAAAACCAGAGCATTAGCGGCG
1 CTAAAAAC-AGAGCATTAGCGGCGCTTTCG-TAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCG
* *
46713957 CTTTCCGTAAAACACCG
63 CTTT-AGTAAAACGCCG
*
46713974 CTAAAAACCAAAGCATTAGCGGCGCTTTCTGTAAAACGCCGCTAAAA
1 CTAAAAA-CAGAGCATTAGCGGCGCTTTC-GTAAAACGCCGCTAAAA
46714021 GTTATATAAC
Statistics
Matches: 182, Mismatches: 20, Indels: 16
0.83 0.09 0.07
Matches are distributed among these distances:
80 4 0.02
81 54 0.30
82 121 0.66
83 3 0.02
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (78 bp):
CTAAAAACAGAGCATTAGCGGCGCTTTCGTAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTT
TAGTAAAACGCCG
Found at i:46713989 original size:123 final size:122
Alignment explanation
Indices: 46713740--46714020 Score: 350
Period size: 123 Copynumber: 2.3 Consensus size: 122
46713730 TAAAACATAG
* * * * * * * *
46713740 AGCAATAGCGGCGTTTTACAAAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTTGGTAAA
1 AGCATTAGCGGCGCTTTAGATAAAACGCCGCTAAAAACAGAGCAATAGCGACGTCTTTCGATAAA
* ** * * **
46713805 ACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAATCGG
66 ACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTCCGTAAAACACCGCTAAAAACCAA
*
46713862 AGCATTAGCGGCGCTTTAGATAAAACGCCGCTAAAAACTAGAGCATTAGCGACG-CTTTCGATAA
1 AGCATTAGCGGCGCTTTAGATAAAACGCCGCTAAAAAC-AGAGCAATAGCGACGTCTTTCGATAA
* *
46713926 AACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCCGTAAAACACCGCTAAAAACCAA
65 AACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTCCGTAAAACACCGCTAAAAACCAA
*
46713985 AGCATTAGCGGCGCTTTCTG-TAAAACGCCGCTAAAA
1 AGCATTAGCGGCGCTTT-AGATAAAACGCCGCTAAAA
46714021 GTTATATAAC
Statistics
Matches: 137, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
122 54 0.39
123 82 0.60
124 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.20
Consensus pattern (122 bp):
AGCATTAGCGGCGCTTTAGATAAAACGCCGCTAAAAACAGAGCAATAGCGACGTCTTTCGATAAA
ACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTCCGTAAAACACCGCTAAAAACCAA
Found at i:46714656 original size:22 final size:22
Alignment explanation
Indices: 46714602--46714653 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
46714592 TATGGTTAAA
*
46714602 GGTTTAAGGTTTATGAGTTACT
1 GGTTTAAGGTTTATGAATTACT
**
46714624 ATTTTAAGGTTTATGAATTA-T
1 GGTTTAAGGTTTATGAATTACT
46714645 GGTTTAAGG
1 GGTTTAAGG
46714654 GTTGAGGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.46
Consensus pattern (22 bp):
GGTTTAAGGTTTATGAATTACT
Found at i:46714733 original size:16 final size:16
Alignment explanation
Indices: 46714712--46714753 Score: 77
Period size: 15 Copynumber: 2.7 Consensus size: 16
46714702 GGTTAATATT
46714712 AACCCCTAAAACCTTA
1 AACCCCTAAAACCTTA
46714728 AACCCCT-AAACCTTA
1 AACCCCTAAAACCTTA
46714743 AACCCCTAAAA
1 AACCCCTAAAA
46714754 AATCATAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (16 bp):
AACCCCTAAAACCTTA
Found at i:46715444 original size:19 final size:20
Alignment explanation
Indices: 46715409--46715452 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
46715399 TAGATTTTAA
46715409 AAAAACATCGATAAATAAAT
1 AAAAACATCGATAAATAAAT
*
46715429 AAAAACATTGAT-AATAAAT
1 AAAAACATCGATAAATAAAT
46715448 AAAAA
1 AAAAA
46715453 TAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (20 bp):
AAAAACATCGATAAATAAAT
Found at i:46715455 original size:6 final size:6
Alignment explanation
Indices: 46715439--46715472 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
46715429 AAAAACATTG
46715439 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA AT
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA AT
46715473 GTATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:46715462 original size:13 final size:13
Alignment explanation
Indices: 46715446--46715470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46715436 TTGATAATAA
46715446 ATAAAAATAAAAT
1 ATAAAAATAAAAT
46715459 ATAAAAATAAAA
1 ATAAAAATAAAA
46715471 ATGTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:46715482 original size:15 final size:14
Alignment explanation
Indices: 46715446--46715487 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
46715436 TTGATAATAA
46715446 ATAAAAAT-AAAAT
1 ATAAAAATAAAAAT
46715459 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
* *
46715473 GTATAAAATAGAAAT
1 ATA-AAAATAAAAAT
46715488 TAGTGCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 8 0.32
14 7 0.28
15 10 0.40
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:46715706 original size:6 final size:6
Alignment explanation
Indices: 46715694--46715730 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
46715684 ACCCATACGA
* *
46715694 TCCCTT CCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
46715731 GGTTTTGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (6 bp):
TCCCTT
Found at i:46718166 original size:13 final size:13
Alignment explanation
Indices: 46718123--46718166 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
46718113 GTTTATCTAC
*
46718123 AATATTTAAATTT
1 AATATTTAAAATT
*
46718136 AAAATTTAAAATT
1 AATATTTAAAATT
*
46718149 TATATTTAAAATT
1 AATATTTAAAATT
46718162 AATAT
1 AATAT
46718167 AATTTAATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATATTTAAAATT
Found at i:46718227 original size:22 final size:21
Alignment explanation
Indices: 46718188--46718228 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
46718178 TTTACATAAT
*
46718188 ATTATTTAACTAATATATTTA
1 ATTATTTAACTAAAATATTTA
*
46718209 ATTATTTTAATTAAAATATT
1 ATTA-TTTAACTAAAATATT
46718229 GAAGTCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATTTAACTAAAATATTTA
Found at i:46719785 original size:93 final size:93
Alignment explanation
Indices: 46719621--46719792 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
46719611 GGATGGTTGA
* *
46719621 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
46719686 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
46719714 GCATTCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
46719779 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
46719793 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46719797 original size:46 final size:46
Alignment explanation
Indices: 46719625--46719799 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
46719615 GGTTGAGCAT
* * *
46719625 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
46719671 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
46719716 ATTCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
46719764 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46719800 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 26 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:46724463 original size:40 final size:40
Alignment explanation
Indices: 46724379--46724603 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
46724369 TTGAATGATG
* * * *
46724379 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
46724419 TCCGGACTAAGAT-CAGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46724459 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46724498 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46724538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46724579 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46724604 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46724621 original size:80 final size:80
Alignment explanation
Indices: 46724379--46724636 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
46724369 TTGAATGATG
* * * * * * * *
46724379 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CAGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
46724442 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
46724459 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
46724523 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
46724538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
46724602 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
46724618 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46724637 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 76 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:46724625 original size:119 final size:119
Alignment explanation
Indices: 46724379--46724636 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
46724369 TTGAATGATG
* *
46724379 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCAGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCAGAAGGCATTT
* ** *
46724444 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * ** *
46724498 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CAGAAGGCAT
* * * *
46724561 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
46724618 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46724637 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCAGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:46732477 original size:39 final size:40
Alignment explanation
Indices: 46732343--46732565 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
46732333 TTGAATGATG
* * * *
46732343 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
46732383 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46732423 TCCGGGCTAAG-CCCGAA-GCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46732461 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46732500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46732541 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46732566 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 26 0.16
39 50 0.31
40 73 0.46
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46732559 original size:79 final size:80
Alignment explanation
Indices: 46732343--46732565 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
46732333 TTGAATGATG
* * * * *
46732343 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
46732406 TTGTGCAAGATACTAAT
64 TTGTGCAAGATACTAAT
* * *
46732423 TCCGGGCTAAG-CCCGAA-GCATTGGTGCGAGTTATTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
* *
46732485 TGTGCGAGTTACTAA-
65 TGTGCAAGATACTAAT
* *
46732500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
46732565 G
66 G
46732566 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
77 12 0.10
78 45 0.37
79 52 0.43
80 13 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCAAGATACTAAT
Found at i:46732587 original size:79 final size:77
Alignment explanation
Indices: 46732382--46732588 Score: 199
Period size: 79 Copynumber: 2.6 Consensus size: 77
46732372 AAGTGACCAT
* ** * *
46732382 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGAT-ACTAATTCCGGGCTAAGCCCGAAGCATT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAA-TCCGGGTTAAGCCCGAAGCATT
*
46732445 GGTGCGAGTTATTAA
63 GGTGCGAGTTACTAA
* ** * *
46732460 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAATCCGGGTTAAG-CCCGAA-GCATTG
46732525 GTGCGAGTTACTATA
64 GTGCGAGTTACTA-A
*
46732540 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTA-ATCCGGGTTAA
46732589 ATTCCGAAAG
Statistics
Matches: 111, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
77 12 0.11
78 40 0.36
79 53 0.48
80 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAATCCGGGTTAAGCCCGAAGCATTGGT
GCGAGTTACTAA
Found at i:46738540 original size:46 final size:46
Alignment explanation
Indices: 46738376--46738549 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
46738366 GGTTGAGCAT
*
46738376 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
46738421 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
46738466 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
46738514 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46738550 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.25
46 34 0.31
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:46742570 original size:19 final size:21
Alignment explanation
Indices: 46742542--46742589 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
46742532 TTATTATTTA
46742542 TTTTAGTTTTGATTATAA-AT
1 TTTTAGTTTTGATTATAATAT
* *
46742562 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTATAATAT
46742582 TTTTAGTT
1 TTTTAGTT
46742590 ACAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTATAATAT
Found at i:46742571 original size:20 final size:20
Alignment explanation
Indices: 46742530--46742589 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
46742520 TTAATCTAAT
*
46742530 TTTTATTAT-TTA-TTTTAG
1 TTTTATTATAATATTTTTAG
*
46742548 TTTTGATTATAA-ATTTTTAT
1 TTTT-ATTATAATATTTTTAG
*
46742568 TTTTATTTTAATATTTTTAG
1 TTTTATTATAATATTTTTAG
46742588 TT
1 TT
46742590 ACAATTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 4 0.12
19 12 0.35
20 18 0.53
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTATTATAATATTTTTAG
Found at i:46770589 original size:30 final size:30
Alignment explanation
Indices: 46770555--46770615 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46770545 TCCTTAACTC
46770555 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
46770585 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
46770615 A
1 A
46770616 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:46772518 original size:20 final size:20
Alignment explanation
Indices: 46772493--46772535 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
46772483 TGTTATATCG
46772493 AGTTTTCAACCCGAGGGTTA
1 AGTTTTCAACCCGAGGGTTA
46772513 AGTTTTCAACCCGAGGGTTA
1 AGTTTTCAACCCGAGGGTTA
46772533 AGT
1 AGT
46772536 ACATACCTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (20 bp):
AGTTTTCAACCCGAGGGTTA
Found at i:46772778 original size:46 final size:46
Alignment explanation
Indices: 46772711--46772884 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
46772701 GTAACCCGCT
*
46772711 CATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGTATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATC
* * *
46772757 CATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCTAGTTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTA--TC
*** * * *
46772803 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATC
* *
46772850 CATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
46772885 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
44 5 0.05
45 2 0.02
46 64 0.60
47 30 0.28
48 1 0.01
49 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTATC
Found at i:46772844 original size:93 final size:93
Alignment explanation
Indices: 46772718--46772889 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
46772708 GCTCATAAGT
* * * *
46772718 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
46772783 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
46772811 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
46772876 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
46772890 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:46772904 original size:46 final size:44
Alignment explanation
Indices: 46772761--46772904 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
46772751 CGTATCCATA
* *
46772761 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
46772810 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
*
46772853 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
46772900 AGTGA
1 AGTGA
46772905 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.42
47 28 0.37
48 4 0.05
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:46777230 original size:15 final size:16
Alignment explanation
Indices: 46777206--46777283 Score: 67
Period size: 15 Copynumber: 5.1 Consensus size: 16
46777196 AAAGAAAACC
46777206 GAATAAAGAAATCCAA
1 GAATAAAGAAATCCAA
* *
46777222 G-ATAGAGAAA-CCCA
1 GAATAAAGAAATCCAA
46777236 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
* *
46777251 TAATAAAGAGATGCC-A
1 GAATAAAGAAAT-CCAA
*
46777267 G-ATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
46777282 GA
1 GA
46777284 TTATGCCAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
14 6 0.12
15 37 0.76
16 6 0.12
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:46777240 original size:30 final size:30
Alignment explanation
Indices: 46777196--46777284 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
46777186 GGAACAAATA
46777196 AAAGAAAACC-GAATAAAGAAATCCAAGAT
1 AAAGAAAACCAGAATAAAGAAATCCAAGAT
* *
46777225 AGAGAAACCCAGAATAAAGAAATCCATA-AT
1 AAAGAAAACCAGAATAAAGAAATCCA-AGAT
** *
46777255 AAAGAGATGCCAG-ATAAAGAAACCCAAGAT
1 AAAGA-AAACCAGAATAAAGAAATCCAAGAT
46777285 TATGCCAGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 35 0.70
31 6 0.12
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.11
Consensus pattern (30 bp):
AAAGAAAACCAGAATAAAGAAATCCAAGAT
Found at i:46784229 original size:49 final size:49
Alignment explanation
Indices: 46784157--46784381 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 49
46784147 CTGGTATGCA
* *
46784157 TAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACG
* ** *
46784206 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGATACACG
* * * * * * * *
46784256 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGATACACG
* * *
46784307 TAGTAGCCTACACTTAGTACTACACATCCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACG
46784356 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
46784382 CGTGACCTCA
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 67 0.45
50 46 0.31
51 37 0.25
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACG
Found at i:46784381 original size:100 final size:99
Alignment explanation
Indices: 46784157--46784388 Score: 286
Period size: 100 Copynumber: 2.3 Consensus size: 99
46784147 CTGGTATGCA
* * * * *
46784157 TAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATCCAATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAATACACATAGTAGCCTACACTTA
** *
46784222 GTACTACACATGTGACCTAACCATCTGATACACG
66 GTACTACACATCCGACCTAACCATCCGATACACG
* * *** *
46784256 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCAATACACATAGTAGCCTACACT
** *
46784321 TAGTACTACACATCCGACC-AATTATCCGGTACACG
64 TAGTACTACACATCCGACCTAACCATCCGATACACG
46784356 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
46784389 TCACAATAGA
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 28 0.25
100 45 0.40
101 39 0.35
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAATACACATAGTAGCCTACACTTA
GTACTACACATCCGACCTAACCATCCGATACACG
Found at i:46784665 original size:27 final size:27
Alignment explanation
Indices: 46784635--46784688 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
46784625 TCATACAACC
* *
46784635 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
46784662 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
46784689 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:46792993 original size:49 final size:49
Alignment explanation
Indices: 46792940--46793171 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
46792930 TTGGTACGCA
* * *
46792940 TAGTAGCCTGCACCTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
* * ** *
46792989 TAGTAGCCTGCACTTAGTACTACGCACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACACG
* * * * * * *
46793039 TAGTAGCCTGCAATTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGATACACG
* * *
46793090 TAGTAGCCTGCACTCAGTACTACACATGCGACCAATTATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
*
46793139 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
46793172 TCACAATAGA
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 68 0.45
50 46 0.31
51 36 0.24
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
Found at i:46793164 original size:100 final size:99
Alignment explanation
Indices: 46792940--46793171 Score: 295
Period size: 100 Copynumber: 2.3 Consensus size: 99
46792930 TTGGTACGCA
* * * * *
46792940 TAGTAGCCTGCACCTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTCA
* * **
46793005 GTACTACGCACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCAATACACG
* * * *
46793039 TAGTAGCCTGCAATTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* **
46793104 CAGTACTACACATGCGACC-AATTATCCAATACACG
64 CAGTACTACACACGCGACCTAACCATCCAATACACG
46793139 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
46793172 TCACAATAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 28 0.25
100 45 0.40
101 40 0.35
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTCA
GTACTACACACGCGACCTAACCATCCAATACACG
Found at i:46800426 original size:22 final size:22
Alignment explanation
Indices: 46800398--46800442 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
46800388 TTGGAATGAG
46800398 TAAGGTTTTCGGTTATGTTGTT
1 TAAGGTTTTCGGTTATGTTGTT
46800420 TAAGGTTTTCGGTTATGTTGTT
1 TAAGGTTTTCGGTTATGTTGTT
46800442 T
1 T
46800443 TGTATGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.04, G:0.27, T:0.56
Consensus pattern (22 bp):
TAAGGTTTTCGGTTATGTTGTT
Found at i:46802688 original size:43 final size:43
Alignment explanation
Indices: 46802640--46802742 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
46802630 TTGGTTTTCA
46802640 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46802683 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46802726 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
46802743 TTGAAAAGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:46802783 original size:29 final size:29
Alignment explanation
Indices: 46802724--46802796 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
46802714 GTTGTGAGAT
* *
46802724 TGGCACTAAGTGTGCGGGCTTGAAAAGCA
1 TGGCACTAAGTGTGCGAGCTTCAAAAGCA
46802753 TGGCACTAAGTGTGCGAG-TTC-AAAGTACA
1 TGGCACTAAGTGTGCGAGCTTCAAAAG--CA
*
46802782 TGGCATTAAGTGTGC
1 TGGCACTAAGTGTGC
46802797 ATGGTTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
27 4 0.10
28 2 0.05
29 33 0.85
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTCAAAAGCA
Found at i:46803198 original size:40 final size:40
Alignment explanation
Indices: 46803111--46803311 Score: 253
Period size: 40 Copynumber: 5.0 Consensus size: 40
46803101 AATGATGTCT
* * *
46803111 GGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCT
1 GGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCC
* * *
46803151 GGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
* *
46803191 GGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
* *
46803231 GGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
* * *
46803271 GGGCTAAGTTCCGAAGAGCAATCGTGCTAGTAATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
46803311 G
1 G
46803312 TTCTAAACCT
Statistics
Matches: 141, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 127 0.90
41 7 0.05
42 7 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
Found at i:46803336 original size:120 final size:120
Alignment explanation
Indices: 46803111--46803343 Score: 274
Period size: 120 Copynumber: 1.9 Consensus size: 120
46803101 AATGATGTCT
* * *
46803111 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCTGGACTAAGTTCCGAAGAGCATTCGT
1 GGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAGAGCAATCGT
* * * * *
46803176 GCTAGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCC
66 GCTAGTAATATATCCGGGCTAAGACCCGAAGAGCAATCATGCTAGTGATATATCC
* ** *
46803231 GGGCTAAGTCCCGAGGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAATC
1 GGGCTAAGTCCCGAAG-GC-TTCGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAGAGCAATC
** * *
46803294 GTGCTAGTAATATATCCGTTCTAA-ACCTCGAAGAGTAATCATGCTGGTGA
64 GTGCTAGTAATATATCCGGGCTAAGACC-CGAAGAGCAATCATGCTAGTGA
46803344 CGTGTATTCG
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
119 2 0.02
120 78 0.83
121 7 0.07
122 7 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
GGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAGAGCAATCGT
GCTAGTAATATATCCGGGCTAAGACCCGAAGAGCAATCATGCTAGTGATATATCC
Found at i:46811189 original size:15 final size:15
Alignment explanation
Indices: 46811169--46811200 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
46811159 AGGGGTATTG
*
46811169 GTAACGCGGATGCTC
1 GTAACGCGAATGCTC
46811184 GTAACGCGAATGCTC
1 GTAACGCGAATGCTC
46811199 GT
1 GT
46811201 CAGCCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (15 bp):
GTAACGCGAATGCTC
Found at i:46817608 original size:48 final size:48
Alignment explanation
Indices: 46817551--46817647 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
46817541 GTAGAGTCTT
46817551 ACTAGATGCTAAAGTCTCACATACATATGAATGAGTAGAGCCAGGGTC
1 ACTAGATGCTAAAGTCTCACATACATATGAATGAGTAGAGCCAGGGTC
46817599 ACTAGATGCTAAAGTCTCACATACATATGAATGAGTAGAGCCAGGGTC
1 ACTAGATGCTAAAGTCTCACATACATATGAATGAGTAGAGCCAGGGTC
46817647 A
1 A
46817648 ATCAATGTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (48 bp):
ACTAGATGCTAAAGTCTCACATACATATGAATGAGTAGAGCCAGGGTC
Found at i:46823528 original size:93 final size:93
Alignment explanation
Indices: 46823416--46823587 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
46823406 CGCCCATAAG
*
46823416 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
46823480 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
46823509 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46823574 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
46823588 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:46823582 original size:46 final size:46
Alignment explanation
Indices: 46823409--46823584 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
46823399 TGTAACCCGC
* *
46823409 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
46823455 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
46823505 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46823548 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
46823585 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46831089 original size:93 final size:93
Alignment explanation
Indices: 46830977--46831148 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
46830967 CGCCCATAAG
*
46830977 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
46831041 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
46831070 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46831135 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
46831149 TCAACATCCT
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:46831143 original size:46 final size:46
Alignment explanation
Indices: 46830970--46831145 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
46830960 TGTAACCCGC
* *
46830970 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
46831016 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
46831066 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46831109 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
46831146 TGCTCAACAT
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46834590 original size:15 final size:16
Alignment explanation
Indices: 46834570--46834600 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
46834560 ATTTTCCTCC
46834570 TAGTTTTGA-AGTTTT
1 TAGTTTTGAGAGTTTT
46834585 TAGTTTTGAGAGTTTT
1 TAGTTTTGAGAGTTTT
46834601 CTCTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (16 bp):
TAGTTTTGAGAGTTTT
Found at i:46839025 original size:48 final size:48
Alignment explanation
Indices: 46838954--46839574 Score: 804
Period size: 48 Copynumber: 13.0 Consensus size: 48
46838944 CAAGATAAAT
46838954 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
46839002 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
46839050 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGCATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** * * * * * * *
46839098 --A--TA-A-GCCG-AATGGCTAATGTG-AAATATG---TATG--GGAT
1 ATATGTATATGTGGTAAAGCCGAATG-GCTAATGTGAAATATGTATGAG
* * *
46839134 ATGTATA--TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
46839180 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
46839228 ATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
46839276 ATGTGTGTATAATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 A------TAT-GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
46839331 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
46839379 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
46839427 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
46839477 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
46839525 ATACGTATATATGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
46839573 AT
1 AT
46839575 GTGTGTATAT
Statistics
Matches: 504, Mismatches: 45, Indels: 48
0.84 0.08 0.08
Matches are distributed among these distances:
36 2 0.00
38 4 0.01
40 5 0.01
41 26 0.05
42 3 0.01
43 1 0.00
44 6 0.01
46 7 0.01
48 357 0.71
49 7 0.01
50 43 0.09
54 2 0.00
55 41 0.08
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:46839104 original size:34 final size:34
Alignment explanation
Indices: 46839066--46839134 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
46839056 ATATGTGGTA
46839066 AAGCCGAATGGCTAATGTGAAATATGCATGAGAT
1 AAGCCGAATGGCTAATGTGAAATATGCATGAGAT
* *
46839100 AAGCCGAATGGCTAATGTGAAATATGTATGGGAT
1 AAGCCGAATGGCTAATGTGAAATATGCATGAGAT
46839134 A
1 A
46839135 TGTATATGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.25
Consensus pattern (34 bp):
AAGCCGAATGGCTAATGTGAAATATGCATGAGAT
Found at i:46839112 original size:82 final size:82
Alignment explanation
Indices: 46839018--46839182 Score: 303
Period size: 82 Copynumber: 2.0 Consensus size: 82
46839008 ATATGTGGTA
46839018 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
46839083 TGAAATATGCATGAGAT
66 TGAAATATGCATGAGAT
*
46839100 AAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
46839165 TGAAATATGTATGGGAT
66 TGAAATATGCATGAGAT
46839182 A
1 A
46839183 TGTATATGTG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (82 bp):
AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATGCATGAGAT
Found at i:46839313 original size:151 final size:151
Alignment explanation
Indices: 46839137--46839583 Score: 737
Period size: 151 Copynumber: 3.0 Consensus size: 151
46839127 ATGGGATATG
46839137 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCG
46839202 AATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAAT
66 AATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAAT
46839267 ATGTAGGAGATGTGTGTATAA
131 ATGTAGGAGATGTGTGTATAA
*
46839288 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCG
* * * *
46839353 AATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 AATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAAT
* *
46839418 ATGTATGAGA------TAT-G
131 ATGTAGGAGATGTGTGTATAA
46839432 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTATGGGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGGGATATGTATATGTGGTAAAGC
* * *
46839497 CAAATGGCTAGTGTGAAATATGTATGAGATACGTATATATGGTAAAGCCGAAGGGCTAGTGTGAA
64 CGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAA
46839562 ATATGTAGGAGATGTGTGTATA
129 ATATGTAGGAGATGTGTGTATA
46839584 TTGTGGCCGA
Statistics
Matches: 271, Mismatches: 16, Indels: 16
0.89 0.05 0.05
Matches are distributed among these distances:
144 30 0.11
145 5 0.02
146 99 0.37
151 134 0.49
152 3 0.01
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.30
Consensus pattern (151 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAAT
ATGTAGGAGATGTGTGTATAA
Found at i:46839440 original size:199 final size:194
Alignment explanation
Indices: 46839100--46839568 Score: 760
Period size: 199 Copynumber: 2.4 Consensus size: 194
46839090 TGCATGAGAT
*
46839100 AAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
46839165 TGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
66 TGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
46839230 ACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAGATGTGTG-TATAATATATG
131 ACGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATA--TAGG-GATG-G-GATAT-ATATATG
46839294 TGGTA
190 TGGTA
46839299 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
46839364 TGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
66 TGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* * * * *
46839429 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTATGGGATATGTATATGTGGTA
131 ACGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATAGGGATGGGATATATATATGTGGTA
* * * * * *
46839493 AAGCCAAATGGCTAGTGTGAAATATGTATGAGATACGTATATATGGTAAAGCCGAAGGGCTAGTG
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
46839558 TGAAATATGTA
66 TGAAATATGTA
46839569 GGAGATGTGT
Statistics
Matches: 256, Mismatches: 13, Indels: 7
0.93 0.05 0.03
Matches are distributed among these distances:
194 82 0.32
195 4 0.02
196 3 0.01
197 3 0.01
199 164 0.64
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.30
Consensus pattern (194 bp):
AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
ACGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATAGGGATGGGATATATATATGTGGTA
Found at i:46839823 original size:37 final size:37
Alignment explanation
Indices: 46839715--46839823 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
46839705 GGAAATATAT
*
46839715 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
46839752 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
46839789 TCTGGGTAATACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
46839824 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:46845323 original size:22 final size:20
Alignment explanation
Indices: 46845275--46845323 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
46845265 TCTTAACTAC
*
46845275 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
46845295 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
46845319 TCAAA
1 TCAAA
46845324 CTTGCATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:46846177 original size:43 final size:43
Alignment explanation
Indices: 46846119--46846234 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
46846109 TTTCACATAT
* * * *
46846119 CAATGCCACTATCCCAAACAGGGTCTTATACAAAATCAT-ATAA
1 CAATGCCAATGTCCCAAACATGGTCTTACACAAAATCATAAT-A
* **
46846162 CGATGCCAATGTCCCAGAA-ATGGTCTTACACATTATCATAATA
1 CAATGCCAATGTCCCA-AACATGGTCTTACACAAAATCATAATA
* *
46846205 CAATGCGAATGTCCCAGACATGGTCTTACA
1 CAATGCCAATGTCCCAAACATGGTCTTACA
46846235 TGTAATCACA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 1 0.02
43 55 0.92
44 4 0.07
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAAACATGGTCTTACACAAAATCATAATA
Found at i:46857748 original size:12 final size:12
Alignment explanation
Indices: 46857731--46857757 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
46857721 TCCGAAGAAT
46857731 ATATATATATAC
1 ATATATATATAC
46857743 ATATATATATAC
1 ATATATATATAC
46857755 ATA
1 ATA
46857758 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:46858273 original size:28 final size:28
Alignment explanation
Indices: 46858205--46858302 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
46858195 CATGAGATTG
* * * *
46858205 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
46858234 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46858262 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
46858289 ACACTGAGTGTGCG
1 GCACTAAGTGTGCG
46858303 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:46858313 original size:27 final size:27
Alignment explanation
Indices: 46858235--46858315 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
46858225 AATTGTACAG
* * *
46858235 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGA-CTTGAATATATAA
* *
46858263 CACTAAGTGTGCGAGTTGATTATATAA
1 CACTAAGTGTGCGACTTGAATATATAA
*
46858290 CACTGAGTGTGCGGACTT-AATATATA
1 CACTAAGTGTGC-GACTTGAATATATA
46858316 CTTTTGAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 29 0.62
28 18 0.38
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (27 bp):
CACTAAGTGTGCGACTTGAATATATAA
Found at i:46864049 original size:6 final size:6
Alignment explanation
Indices: 46864038--46864073 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
46864028 AAATCTGCTA
46864038 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA
46864074 GTAGTTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:46875017 original size:9 final size:9
Alignment explanation
Indices: 46875005--46875034 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
46874995 TGAGGAATCA
46875005 GAGGAGGTG
1 GAGGAGGTG
46875014 GAGGAGGTG
1 GAGGAGGTG
*
46875023 GGGGAGGTG
1 GAGGAGGTG
46875032 GAG
1 GAG
46875035 TGTTCGGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.10
Consensus pattern (9 bp):
GAGGAGGTG
Found at i:46876052 original size:367 final size:366
Alignment explanation
Indices: 46875380--46876111 Score: 1349
Period size: 367 Copynumber: 2.0 Consensus size: 366
46875370 AACCCGCACC
46875380 GGGGTAGATTACAAGGCATTACCTAACTTGATCTCATGCATACACCCAATCTCAAATTACCGAGA
1 GGGGTAGATTACAAGGCATTACCTAACTTGATCTCATGCATACACCCAATCTCAAATTACCGAGA
46875445 CTCGATCCAAATTAAAACTTTTTCAATTCTACTTTAATCTTCTTATTATGGACTTACGAGTCCCA
66 CTCGATCCAAATTAAAACTTTTTCAATTCTACTTTAATCTTCTTATTATGGACTTACGAGTCCCA
* *
46875510 AATAGATTGTTGATAACTATTCAGAACCATTCTTGGTCCTTAAACCAACCTTAAGAAATTACCTT
131 AATAGATCGTTGATAACAATTCAGAACCATTCTTGGTCCTTAAACCAACCTTAAGAAATTACCTT
*
46875575 TAAAACAGGGCACATGCCCGTATGGAAGGGTAACACGCCCGTGTGACCATTTCGACATGGTCGTG
196 TAAAACAGGGCACATGCCCATATGGAAGGGTAACACGCCCGTGTGACCATTTCGACATGGTCGTG
*
46875640 CCAATGGCCTGTGTGGCTCACATGACCTAAGCACACTGGGACACGCCCTTATACCACACCCGTGT
261 CCAATGGCCTGTGTGGCTCACATGACCTAAGCACACTGGGACACGCCCGTATACCACACCCGTGT
46875705 ATAATTAATTTCTAATTTACACCTATAGAGGTTTTCACACG
326 ATAATTAATTTCTAATTTACACCTATAGAGGTTTTCACACG
46875746 GGGGTAGATTACAAGGCATTACCTAACTTGATCTCATGCATACACCCAATCTCAAATTACCGAGA
1 GGGGTAGATTACAAGGCATTACCTAACTTGATCTCATGCATACACCCAATCTCAAATTACCGAGA
46875811 CTCGATCCAAATTAAAACTTTTTCAATTTCTACTTTAATCTTCTTATTATGGACTTACGAGTCCC
66 CTCGATCCAAATTAAAACTTTTTCAA-TTCTACTTTAATCTTCTTATTATGGACTTACGAGTCCC
* *
46875876 AAATCGATCGTTGATAACAATTCGGAACCATTCTTGGTCCTTAAACCAACCTTAAGAAATTACCT
130 AAATAGATCGTTGATAACAATTCAGAACCATTCTTGGTCCTTAAACCAACCTTAAGAAATTACCT
46875941 TTAAAACAGGGCACATGCCCATATGGAAGGGTAACACGCCCGTGTGACCATTTCGACATGGTCGT
195 TTAAAACAGGGCACATGCCCATATGGAAGGGTAACACGCCCGTGTGACCATTTCGACATGGTCGT
* * *
46876006 GCCAATGG-CTCGTGTGGCTTACATGACCTAAGCACACTGGGACACGCCCGTGTCCCACACCCGT
260 GCCAATGGCCT-GTGTGGCTCACATGACCTAAGCACACTGGGACACGCCCGTATACCACACCCGT
*
46876070 GTGTAATTAATTTCTAATTTACACCTATAGAGGTTTTCACAC
324 GTATAATTAATTTCTAATTTACACCTATAGAGGTTTTCACAC
46876112 TGCCAGACAC
Statistics
Matches: 354, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
366 93 0.26
367 261 0.74
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (366 bp):
GGGGTAGATTACAAGGCATTACCTAACTTGATCTCATGCATACACCCAATCTCAAATTACCGAGA
CTCGATCCAAATTAAAACTTTTTCAATTCTACTTTAATCTTCTTATTATGGACTTACGAGTCCCA
AATAGATCGTTGATAACAATTCAGAACCATTCTTGGTCCTTAAACCAACCTTAAGAAATTACCTT
TAAAACAGGGCACATGCCCATATGGAAGGGTAACACGCCCGTGTGACCATTTCGACATGGTCGTG
CCAATGGCCTGTGTGGCTCACATGACCTAAGCACACTGGGACACGCCCGTATACCACACCCGTGT
ATAATTAATTTCTAATTTACACCTATAGAGGTTTTCACACG
Found at i:46919365 original size:48 final size:48
Alignment explanation
Indices: 46919277--46919605 Score: 243
Period size: 48 Copynumber: 6.9 Consensus size: 48
46919267 AATTGTCGAC
* * * *
46919277 GCCATGCCCCAGACACGGTCTTACACTAGCAAACATATCAACGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGAT
* * * * *
46919325 GGCATGTCCCAAACATCGTCTTACAGTAGCACACATATCAACACTGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGAT
* * * * ** *
46919373 GCCATGTCCC-ATCATGGTCTTACACTGGCTCTCATACTC-TGGCCTAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATA-TCAACGCCGAT
* * * *
46919420 GCCATGTTCCACACATGGTCTTACACTAGTACACATATTAACGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGAT
* * * * * * *** *
46919468 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCAAAAT-GTGGCTGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCACAC-ATATCAACGCCGAT
* * * * * * **
46919516 TCCATGTCCCAAACATGATCTTACATTGGCTCTCATAAT-ATGGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACAT-ATCAACGCCGAT
* *
46919564 GCCATGTCCCAGACATGGTCTTACACAAGCACACATATCAAC
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAC
46919606 CAAATGTCAT
Statistics
Matches: 213, Mismatches: 62, Indels: 12
0.74 0.22 0.04
Matches are distributed among these distances:
47 36 0.17
48 174 0.82
49 3 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGAT
Found at i:46919522 original size:96 final size:96
Alignment explanation
Indices: 46919327--46919589 Score: 298
Period size: 96 Copynumber: 2.8 Consensus size: 96
46919317 ACGCCGATGG
* * * * * * *
46919327 CATGTCCCAAACATCGTCTTACAGTAGCACACATATCAACACTGATGCCATGTCCCA-TCATGGT
1 CATGTCCCAAACATGGTCTTACACTAGTACACATATTAACGCCGATGCCATGTCCCAGACATGGT
* *
46919391 CTTACACTGGCTCTCATACTCTGGCCTATGC
66 CTTACACTGGCTCTCAAAATCTGGCCTATGC
* * *
46919422 CATGTTCCACACATGGTCTTACACTAGTACACATATTAACGCCGATGCCATGTCCTAGACATGGT
1 CATGTCCCAAACATGGTCTTACACTAGTACACATATTAACGCCGATGCCATGTCCCAGACATGGT
* *
46919487 CTTACACTGGCTCTCAAAATGTGG-CTGATTC
66 CTTACACTGGCTCTCAAAATCTGGCCT-ATGC
* * * * * **
46919518 CATGTCCCAAACATGATCTTACATTGGCT-CTCATAATATGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTAG-TACACATATTAACGCCGATGCCATGTCCCAGACATGG
46919582 TCTTACAC
65 TCTTACAC
46919590 AAGCACACAT
Statistics
Matches: 141, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
95 50 0.35
96 90 0.64
97 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (96 bp):
CATGTCCCAAACATGGTCTTACACTAGTACACATATTAACGCCGATGCCATGTCCCAGACATGGT
CTTACACTGGCTCTCAAAATCTGGCCTATGC
Found at i:46928556 original size:39 final size:40
Alignment explanation
Indices: 46928456--46928640 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
46928446 TTGAATGATG
* * *
46928456 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
46928495 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46928536 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46928575 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46928614 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46928641 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46928596 original size:79 final size:81
Alignment explanation
Indices: 46928456--46928640 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
46928446 TTGAATGATG
* *
46928456 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
46928520 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
46928535 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
46928597 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
46928615 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46928641 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:46928662 original size:79 final size:79
Alignment explanation
Indices: 46928509--46928673 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
46928499 GGACTAAGAT
* **
46928509 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
46928574 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
46928588 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
46928651 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46928667 CCGAAGG
1 CCGAAGG
46928674 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46930238 original size:48 final size:48
Alignment explanation
Indices: 46930181--46930561 Score: 350
Period size: 48 Copynumber: 8.0 Consensus size: 48
46930171 GCGTCAATTA
46930181 CCGATGCCATG-CCCTAGACATGGTCTTACACTAGCACACATATCAATG
1 CCGATGCCATGTCCC-AGACATGGTCTTACACTAGCACACATATCAATG
* * *
46930229 CCAATGCCATGTCCCAGACATGGTCTTATACTAGCACACATATTAACT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA-TG
* * * * * *
46930277 CTGATGCCGTGTCACAGACATGGTCTTACACTGGC-CTCATA--ATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA-AT-G
* * *
46930324 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATG
* * * * * * *
46930372 CTGATGCCATGTCCTAGACATGGTTTTACACTGGCTCTCATA--ATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA-AT-G
* * * * * * *
46930420 CCGATGCCATGTCCTAAAGATGGTCTTACACTGGCTCTCATAATGC--GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-AT-CAATG
*
46930468 CCGATGCCATGCCCCAGACATGGTCTTACACTAGCACACATATCAACT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA-TG
* *
46930516 CCGATGCCATGTCCCAGACATGTTCTTACACTGGCACACATATCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA
46930562 CCAAATGTCA
Statistics
Matches: 272, Mismatches: 44, Indels: 34
0.78 0.13 0.10
Matches are distributed among these distances:
45 2 0.01
46 2 0.01
47 38 0.14
48 223 0.82
49 6 0.02
50 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATG
Found at i:46938540 original size:26 final size:26
Alignment explanation
Indices: 46938511--46938561 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
46938501 TGCATTACTG
* *
46938511 TTACTGGTAGCTTTGCTGCGATATTA
1 TTACTGGCAGCTTTGCTACGATATTA
*
46938537 TTACTGGCATCTTTGCTACGATATT
1 TTACTGGCAGCTTTGCTACGATATT
46938562 GGTGTGTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.43
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTACGATATTA
Found at i:46941378 original size:39 final size:39
Alignment explanation
Indices: 46941339--46941487 Score: 208
Period size: 39 Copynumber: 3.8 Consensus size: 39
46941329 ACATATTTCT
* * * *
46941339 AGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTCT
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
* * * *
46941378 AGTACATAGCCTGCGCACCTTAAGTTCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
46941417 AGCACATAGCCTGCGGACCCTAAGTCCTGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
46941456 AGCACATAGCCTGTGGACCCTAAGTCCGGATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
46941488 AACATCACTG
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:46949183 original size:39 final size:39
Alignment explanation
Indices: 46949140--46949292 Score: 209
Period size: 39 Copynumber: 3.9 Consensus size: 39
46949130 CCGAACATAT
* * *
46949140 TTCCAGCACGTAACCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAACCTGCGGACCCTAAGTCCGGATATAA
* *
46949179 TTCCAGCACA-AAGCCTGCAGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAA-CCTGCGGACCCTAAGTCCGGATATAA
* * *
46949218 TTCTAGCACATAGCCTGCGGACCCTAAGTCCTGATATAA
1 TTCCAGCACATAACCTGCGGACCCTAAGTCCGGATATAA
*
46949257 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAACCTGCGGACCCTAAGTCCGGATA
46949293 AACATCACTG
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 2 0.02
39 99 0.97
40 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAACCTGCGGACCCTAAGTCCGGATATAA
Found at i:46951503 original size:27 final size:27
Alignment explanation
Indices: 46951464--46951556 Score: 141
Period size: 27 Copynumber: 3.4 Consensus size: 27
46951454 AGTTGGTCCT
* *
46951464 AGCCCATTAACAAAATCAGGTGGGCCTA
1 AGCCCAGT-ACAAAATAAGGTGGGCCTA
*
46951492 AGCCCAGTACAAAATGAGGTGGGCCTA
1 AGCCCAGTACAAAATAAGGTGGGCCTA
*
46951519 AGCCCAGTACAGAATAAGGTGGGCCTA
1 AGCCCAGTACAAAATAAGGTGGGCCTA
46951546 AGCCCAGTACA
1 AGCCCAGTACA
46951557 GAATTAGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 54 0.89
28 7 0.11
ACGTcount: A:0.34, C:0.25, G:0.26, T:0.15
Consensus pattern (27 bp):
AGCCCAGTACAAAATAAGGTGGGCCTA
Found at i:46951557 original size:27 final size:27
Alignment explanation
Indices: 46951481--46951560 Score: 142
Period size: 27 Copynumber: 3.0 Consensus size: 27
46951471 TAACAAAATC
* *
46951481 AGGTGGGCCTAAGCCCAGTACAAAATG
1 AGGTGGGCCTAAGCCCAGTACAGAATA
46951508 AGGTGGGCCTAAGCCCAGTACAGAATA
1 AGGTGGGCCTAAGCCCAGTACAGAATA
46951535 AGGTGGGCCTAAGCCCAGTACAGAAT
1 AGGTGGGCCTAAGCCCAGTACAGAAT
46951561 TAGTATCAGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.30, T:0.15
Consensus pattern (27 bp):
AGGTGGGCCTAAGCCCAGTACAGAATA
Found at i:46951790 original size:22 final size:22
Alignment explanation
Indices: 46951706--46951790 Score: 80
Period size: 22 Copynumber: 3.9 Consensus size: 22
46951696 CTAAGTCAAT
* * *
46951706 AGGACAGCTCAATGCCATAGAC
1 AGGACGGCTCAACGCCGTAGAC
* * *
46951728 AGGATGGCTCAACGCTGTAGAT
1 AGGACGGCTCAACGCCGTAGAC
* *
46951750 AGGACGACTCAACGTCGTAGAC
1 AGGACGGCTCAACGCCGTAGAC
* *
46951772 AGGACGGCTAAAGGCCGTA
1 AGGACGGCTCAACGCCGTA
46951791 AATATCACAG
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.32, C:0.24, G:0.29, T:0.15
Consensus pattern (22 bp):
AGGACGGCTCAACGCCGTAGAC
Found at i:46956399 original size:68 final size:67
Alignment explanation
Indices: 46956327--46956476 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46956317 CATCATGTGT
* * * *
46956327 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46956389 ATGTAG
62 ATGTAG
** * *
46956395 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46956460 AG
66 AG
46956462 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46956477 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46956432 original size:64 final size:64
Alignment explanation
Indices: 46956351--46956534 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
46956341 AGACATTATG
* *
46956351 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46956415 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46956480 AA
63 AA
** * * *
46956482 ACTG--GCTAGGTCAAATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46956535 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46962859 original size:25 final size:24
Alignment explanation
Indices: 46962831--46962885 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
46962821 TGAGTGTCGA
46962831 ATTCTTCCTTCTCTTCTCCTCTCTT
1 ATTCTTCCTTCTCTTCTCCT-TCTT
* *
46962856 ATTCTAT-TTTCTTTTCTCCTTCTT
1 ATTCT-TCCTTCTCTTCTCCTTCTT
46962880 -TTCTTC
1 ATTCTTC
46962886 TCTAGCCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
22 1 0.04
23 4 0.15
24 4 0.15
25 16 0.62
26 1 0.04
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTCTTCCTTCTCTTCTCCTTCTT
Found at i:46964440 original size:60 final size:60
Alignment explanation
Indices: 46964369--46964503 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 60
46964359 CTGTGTTAAT
* * *
46964369 ATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTAAGGCCCAGATTGATACTGAC
1 ATGGGCTAGGCCCAATATACTCTCATA-TTGTAA-AGGGCCAAGGCCCAGATTAATACTGAC
* * * * * *
46964429 ATGGGCTAGGCCCAGTATACTCTGATATTGTAAGGGGCCATGGCCCAGATTAATATTGAT
1 ATGGGCTAGGCCCAATATACTCTCATATTGTAAAGGGCCAAGGCCCAGATTAATACTGAC
46964489 ATGGGCTAAGGCCCA
1 ATGGGCT-AGGCCCA
46964504 GTTAACTCTG
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
60 45 0.71
61 17 0.27
62 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (60 bp):
ATGGGCTAGGCCCAATATACTCTCATATTGTAAAGGGCCAAGGCCCAGATTAATACTGAC
Found at i:46978482 original size:16 final size:16
Alignment explanation
Indices: 46978461--46978492 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
46978451 GGCCACGACC
*
46978461 GTGCGACATGGCCGTG
1 GTGCGACATGCCCGTG
46978477 GTGCGACATGCCCGTG
1 GTGCGACATGCCCGTG
46978493 TCTAGAAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.28, G:0.41, T:0.19
Consensus pattern (16 bp):
GTGCGACATGCCCGTG
Found at i:46980574 original size:11 final size:11
Alignment explanation
Indices: 46980560--46980584 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46980550 TTCATTTTCC
46980560 TTTAATATTAG
1 TTTAATATTAG
46980571 TTTAATATTAG
1 TTTAATATTAG
46980582 TTT
1 TTT
46980585 TTATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (11 bp):
TTTAATATTAG
Found at i:46984146 original size:12 final size:12
Alignment explanation
Indices: 46984129--46984159 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
46984119 CCTCATACAC
*
46984129 CTGTGTGTTAGG
1 CTGTGTGCTAGG
46984141 CTGTGTGCTAGG
1 CTGTGTGCTAGG
46984153 CTGTGTG
1 CTGTGTG
46984160 AAAACTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.13, G:0.42, T:0.39
Consensus pattern (12 bp):
CTGTGTGCTAGG
Found at i:46987622 original size:46 final size:43
Alignment explanation
Indices: 46987474--46987614 Score: 115
Period size: 46 Copynumber: 3.1 Consensus size: 43
46987464 TGTAACCCAC
* *
46987474 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGATGCCTAGTTA
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---A
* * * *
46987521 -CATTTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAA
*
46987567 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAA
46987611 CCAT
1 CCAT
46987615 CCTAGTGACA
Statistics
Matches: 75, Mismatches: 12, Indels: 17
0.72 0.12 0.16
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 30 0.40
47 29 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAA
Found at i:46988058 original size:30 final size:30
Alignment explanation
Indices: 46988024--46988083 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
46988014 ATTTAATACG
46988024 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
46988054 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
46988084 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:46992889 original size:46 final size:45
Alignment explanation
Indices: 46992788--46992881 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 45
46992778 TGTAACCCAC
* *
46992788 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAA
*
46992834 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
46992878 CCAT
1 CCAT
46992882 CCTAGTGACA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 9 0.20
46 36 0.80
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
Found at i:46993325 original size:30 final size:30
Alignment explanation
Indices: 46993291--46993347 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
46993281 ATTTAATACG
46993291 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
46993321 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTAACAAAATTACACTTTTGCCC
46993348 TAGGCTCAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:47001205 original size:25 final size:25
Alignment explanation
Indices: 47001177--47001251 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
47001167 GCCGTGAATT
47001177 GGTATGCTCACTCAAGCTATAGGTC
1 GGTATGCTCACTCAAGCTATAGGTC
* * **
47001202 GGTATGCTC-TTACAAACTATAAATC
1 GGTATGCTCACT-CAAGCTATAGGTC
* * *
47001227 GGTATGCTCACACGAGCTATGGGTC
1 GGTATGCTCACTCAAGCTATAGGTC
47001252 AGAACGTAGC
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
GGTATGCTCACTCAAGCTATAGGTC
Found at i:47017083 original size:57 final size:57
Alignment explanation
Indices: 47016995--47017115 Score: 242
Period size: 57 Copynumber: 2.1 Consensus size: 57
47016985 CTCGTATGTG
47016995 CACATAGTTAGGCATCATTTCAATAATATTCAATTCACTTAGTCATAAGGCCGAATA
1 CACATAGTTAGGCATCATTTCAATAATATTCAATTCACTTAGTCATAAGGCCGAATA
47017052 CACATAGTTAGGCATCATTTCAATAATATTCAATTCACTTAGTCATAAGGCCGAATA
1 CACATAGTTAGGCATCATTTCAATAATATTCAATTCACTTAGTCATAAGGCCGAATA
47017109 CACATAG
1 CACATAG
47017116 CAATTTCCCA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (57 bp):
CACATAGTTAGGCATCATTTCAATAATATTCAATTCACTTAGTCATAAGGCCGAATA
Found at i:47025506 original size:21 final size:19
Alignment explanation
Indices: 47025466--47025502 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
47025456 CCAAAAAAAT
47025466 TCTCTCCCCTTTCTTTTTC
1 TCTCTCCCCTTTCTTTTTC
47025485 TCTCTCCCCTTTCTTTTT
1 TCTCTCCCCTTTCTTTTT
47025503 TTCTGTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (19 bp):
TCTCTCCCCTTTCTTTTTC
Found at i:47028105 original size:94 final size:93
Alignment explanation
Indices: 47027910--47028180 Score: 298
Period size: 94 Copynumber: 2.8 Consensus size: 93
47027900 GTTATTGTGG
* * * *
47027910 GCTAGTGTAAAACATGTCTGGGACATGCCTCGGCTGC-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTGCGA-GAT-AGTGCCAGTGTAAGACCATGT
** *
47027974 CTAGGACATGGCATCGGCATTGAGACGAGT
64 CTAGGACATGGCATCGGCACGGAGACGAGA
* *
47028004 G-TCAGTGTAAGACATGTCTGGGACATGCATCAGCTGCGAGAT-GTGTCAGTGTAAGACCATGTC
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCTGCGAGATAGTGCCAGTGTAAGACCATGTC
* * *
47028067 TGGGACATGGCATCTGCACGGATATGCGAGA
65 TAGGACATGGCATCGGCACGGAGA--CGAGA
*
47028098 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGAATAATAGCCAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTGCGAG-ATAGT-GCCAGTGTAAGACCA
*
47028162 TGCCTAGGACATGGCATCG
61 TGTCTAGGACATGGCATCG
47028181 ACACCTTACC
Statistics
Matches: 148, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
92 38 0.26
93 1 0.01
94 48 0.32
95 16 0.11
96 10 0.07
97 4 0.03
98 1 0.01
99 30 0.20
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTGCGAGATAGTGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGGCACGGAGACGAGA
Found at i:47031400 original size:43 final size:42
Alignment explanation
Indices: 47031311--47031419 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 42
47031301 GATTACGTGT
* * *
47031311 AAGACCATATTTGGGATATGGCATCGATATGAGACTTCATGT
1 AAGACCATATCTGGGATATGGCATCGATACGAGACTTCATGC
* * *
47031353 AAGACCATAGCTGGGCTATTGGCATCGATACGAGA-TTATATGC
1 AAGACCATATCTGGGATA-TGGCATCGATACGAGACTT-CATGC
*
47031396 AAGACCATATCTGGGGTATGGCAT
1 AAGACCATATCTGGGATATGGCAT
47031420 TAGTACGATA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
42 23 0.40
43 34 0.60
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
AAGACCATATCTGGGATATGGCATCGATACGAGACTTCATGC
Found at i:47037579 original size:39 final size:39
Alignment explanation
Indices: 47037536--47037692 Score: 242
Period size: 39 Copynumber: 4.0 Consensus size: 39
47037526 CAAGATACTA
* *
47037536 GAAATGTATCCCGGCTAAAGTCCAGCAGGCTTCGTGCTG
1 GAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
47037575 GAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTG
1 GAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTG
** *
47037614 GAAATGTATCCAGGCTAAAGTCCCGTTGGCTTCGTGCAG
1 GAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
47037653 GAAATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTGCTG
1 GAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTG
47037692 G
1 G
47037693 TAATATAATT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
GAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:47039963 original size:28 final size:28
Alignment explanation
Indices: 47039927--47040026 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
47039917 GTGAACATAG
47039927 GCACTGTGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ** ****
47039955 GCATTGTGTGTGCCAGATAGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
47039983 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
47040012 GCACTGTGTGTGCGA
1 GCACTGTGTGTGCGA
47040027 CATCGATTGT
Statistics
Matches: 53, Mismatches: 18, Indels: 2
0.73 0.25 0.03
Matches are distributed among these distances:
28 34 0.64
29 19 0.36
ACGTcount: A:0.17, C:0.20, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:47039994 original size:57 final size:57
Alignment explanation
Indices: 47039925--47040053 Score: 213
Period size: 57 Copynumber: 2.3 Consensus size: 57
47039915 AAGTGAACAT
* * *
47039925 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCATTGTGTGTGCCAGATAGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCCACATAGATTGTTG
* *
47039982 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGACATCGATTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCCACATAGATTGTTG
47040039 AGGCACTGTGTGTGC
1 AGGCACTGTGTGTGC
47040054 AAGATCGGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 67 1.00
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCCACATAGATTGTTG
Found at i:47039995 original size:29 final size:29
Alignment explanation
Indices: 47039959--47040083 Score: 117
Period size: 29 Copynumber: 4.3 Consensus size: 29
47039949 AACCGAGCAT
* *
47039959 TGTGTGTGCCAGATAGGTTGTTGAGGCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
* * ****
47039988 TGTGTGTGCGAGTTCCGTAACCGA-GCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
* *
47040016 TGTGTGTGCGACATCGATTGTTGAGGCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
* *
47040045 TGTGTGTGCAAGATCGGTTGTTGGGGCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
47040074 TAAGTGTGTG
1 T--GTGTGTG
47040084 AAATGAGATC
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
28 20 0.27
29 46 0.63
31 7 0.10
ACGTcount: A:0.17, C:0.16, G:0.37, T:0.30
Consensus pattern (29 bp):
TGTGTGTGCGAGATCGGTTGTTGAGGCAC
Found at i:47042916 original size:39 final size:39
Alignment explanation
Indices: 47042871--47043067 Score: 290
Period size: 39 Copynumber: 5.1 Consensus size: 39
47042861 ATGCAAGATA
* * *
47042871 CTGGAAATGTATTCGGGCTAAAGTCCCATAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* *
47042910 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
47042949 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
*
47042988 CTGGAAATGTATCCAGGCTAAAGT-CCGT-GGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* * * *
47043025 CAGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
47043064 CTGG
1 CTGG
47043068 TAATATAATT
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
37 32 0.22
38 7 0.05
39 105 0.73
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
Found at i:47047910 original size:38 final size:38
Alignment explanation
Indices: 47047847--47047947 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 38
47047837 ATTTGATGTG
*
47047847 TATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
47047887 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* *
47047925 TATCCAGGATAAATCCCGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
47047948 CTAGTACTGG
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 43 0.77
39 5 0.09
40 8 0.14
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:47047958 original size:38 final size:38
Alignment explanation
Indices: 47047863--47047965 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
47047853 GGTTTAAAGA
* * *
47047863 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCAGGATAAAT
*
47047901 CCCGCAGGCTTCGTGCTGGTAGTATATCCAGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCAGGATAAAT
* * * *
47047939 CCCGCAGGCCTAGTACTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTAATATAT
47047966 TTGGGCCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.27
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCAGGATAAAT
Found at i:47048016 original size:43 final size:43
Alignment explanation
Indices: 47047963--47048117 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 43
47047953 ACTGGTATTA
* * *
47047963 TATTTGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTAATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
47048006 TATTCGGGCCTTCGTGCCTAGCAGGCTCCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
47048049 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
47048092 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
47048118 GTAATGCCGG
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 104 1.00
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:47055347 original size:79 final size:81
Alignment explanation
Indices: 47055245--47055429 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
47055235 GCTCCTCGTT
* *
47055245 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47055308 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
47055325 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
47055389 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
47055405 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47055430 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:47055429 original size:40 final size:40
Alignment explanation
Indices: 47055245--47055429 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
47055235 GCTCCTCGTT
* *
47055245 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
47055285 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47055325 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
47055364 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
47055405 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47055430 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47063255 original size:40 final size:40
Alignment explanation
Indices: 47063211--47063435 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
47063201 GCTCCTCGTT
* *
47063211 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
47063251 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47063291 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
47063330 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
* * * *
47063371 CAAA-GCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
47063411 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47063436 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47063313 original size:79 final size:79
Alignment explanation
Indices: 47063211--47063435 Score: 233
Period size: 79 Copynumber: 2.8 Consensus size: 79
47063201 GCTCCTCGTT
* *
47063211 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
47063276 ATTTAGTAAC-TCGCA
64 ATATAGTAACTTAGCA
* * *
47063291 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* *
47063355 ATATGGTCACTTAGCA
64 ATATAGTAACTTAGCA
* * * * *
47063371 CAAA-GCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
47063434 GA
63 GA
47063436 CATCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 54 0.45
80 51 0.42
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCA
Found at i:47077025 original size:47 final size:47
Alignment explanation
Indices: 47076972--47077218 Score: 388
Period size: 47 Copynumber: 5.3 Consensus size: 47
47076962 ACAAGATATG
47076972 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
47077019 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
47077066 TATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
47077112 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
47077159 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
47077206 TAAATGTGATAAG
1 TATATGTGATAAG
47077219 TCCCGAAGGG
Statistics
Matches: 181, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 42 0.23
47 139 0.77
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:47077094 original size:93 final size:94
Alignment explanation
Indices: 47076972--47077214 Score: 416
Period size: 93 Copynumber: 2.6 Consensus size: 94
47076962 ACAAGATATG
*
47076972 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGACCTA
47077037 ATGGCCGATGTGATGAATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
* *
47077066 TATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGACCTA
* *
47077130 ATGGCCGATGTGATGGATGTGAAGGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
* *
47077159 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
47077215 TAAGTCCCGA
Statistics
Matches: 140, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
93 88 0.63
94 52 0.37
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGACCTA
ATGGCCGATGTGATGAATGTGAAAGTGTA
Done.