Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 148 of 325
Found at i:47082136 original size:47 final size:47
Alignment explanation
Indices: 47082083--47082330 Score: 379
Period size: 47 Copynumber: 5.3 Consensus size: 47
47082073 ACAAGATATG
*
47082083 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
47082130 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
47082177 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
47082224 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
47082271 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
47082318 TAAATGTGATAAG
1 TATATGTGATAAG
47082331 TCTCGAAGGG
Statistics
Matches: 180, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:47084323 original size:38 final size:38
Alignment explanation
Indices: 47084278--47084390 Score: 140
Period size: 38 Copynumber: 3.0 Consensus size: 38
47084268 AATCCGGGCT
* *
47084278 TAAAGACCCGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATATGTAGAGATTATGTCCGGG
47084316 TAAAGACCCGATGACTATATGT-GAAGATTATG-CCTGGG
1 TAAAGACCCGATGACTATATGTAG-AGATTATGTCC-GGG
* * * *
47084354 TAAAGATCCGATGGCTATGTGCAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGTAGAGATTATGTCCGG
47084391 ATTAAAATTC
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
37 3 0.05
38 59 0.91
39 3 0.05
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGTAGAGATTATGTCCGGG
Found at i:47084511 original size:40 final size:40
Alignment explanation
Indices: 47084448--47084638 Score: 337
Period size: 40 Copynumber: 4.8 Consensus size: 40
47084438 CTCGACGATG
*
47084448 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* *
47084488 ATCTGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
47084528 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
47084568 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* *
47084608 ATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
47084639 CGATGATGTG
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:47084849 original size:25 final size:25
Alignment explanation
Indices: 47084807--47084861 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
47084797 TGTGTAATAA
*
47084807 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGACACTATGTGTG
*
47084832 CGAATGAAT-TGAGACACTGTGTGTG
1 CGAATGAATAT-AGACACTATGTGTG
47084857 CGAAT
1 CGAAT
47084862 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGACACTATGTGTG
Found at i:47084885 original size:28 final size:28
Alignment explanation
Indices: 47084846--47084997 Score: 105
Period size: 28 Copynumber: 5.4 Consensus size: 28
47084836 TGAATTGAGA
*
47084846 CACTGTGTGTGCGAATTCTTTAACCGAG
1 CACTATGTGTGCGAATTCTTTAACCGAG
** * **
47084874 CACTATGTGTGCGAGA-TCGGTCAGTG-G
1 CACTATGTGTGCGA-ATTCTTTAACCGAG
*
47084901 ACACTGTGTGTGCGAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
** * **
47084930 CACTATGTGTGCGAGA-TCGGTCAGTG-G
1 CACTATGTGTGCGA-ATTCTTTAACCGAG
*
47084957 ACACTGTGTGTGCGAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
* *
47084986 AACTACGTGTGC
1 CACTATGTGTGC
47084998 AAGATCGGTC
Statistics
Matches: 89, Mismatches: 27, Indels: 16
0.67 0.20 0.12
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTATGTGTGCGAATTCTTTAACCGAG
Found at i:47084914 original size:56 final size:56
Alignment explanation
Indices: 47084844--47085026 Score: 330
Period size: 56 Copynumber: 3.3 Consensus size: 56
47084834 AATGAATTGA
47084844 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
47084900 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
* * *
47084956 GACACTGTGTGTGCGAATTCTTTAACCGAGAACTACGTGTGCAAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
47085012 GGCACTGTGTGTGCG
1 GACACTGTGTGTGCG
47085027 GATTTCGTTT
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 123 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (56 bp):
GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
Found at i:47088137 original size:47 final size:47
Alignment explanation
Indices: 47088084--47088303 Score: 359
Period size: 47 Copynumber: 4.7 Consensus size: 47
47088074 ATAAGATATG
47088084 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
47088131 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
47088178 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
47088225 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
47088272 TATATGTGATAAGGCCGAGTGGCCAATGTGAT
1 TATATGTGATAAGGCCGAATGGCCAATGTGAT
47088304 AAGTCCCGAA
Statistics
Matches: 157, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 157 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:47088196 original size:94 final size:94
Alignment explanation
Indices: 47088084--47088303 Score: 395
Period size: 94 Copynumber: 2.3 Consensus size: 94
47088074 ATAAGATATG
* *
47088084 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGACAAGACCTA
47088149 ATGGCCGATGTGATGAATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
*
47088178 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGACAAGACCTA
*
47088243 ATGGCCGATGTGATGGATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
*
47088272 TATATGTGATAAGGCCGAGTGGCCAATGTGAT
1 TATATGTGATAAGGCCGAATGGCCAATGTGAT
47088304 AAGTCCCGAA
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 121 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGACAAGACCTA
ATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:47104322 original size:39 final size:39
Alignment explanation
Indices: 47104243--47104463 Score: 345
Period size: 39 Copynumber: 5.7 Consensus size: 39
47104233 TGTGTGAGAT
* * *
47104243 TTATATTCGGGCTAAG-CCCAAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
47104281 TTATATCTGGGCTAAGTCCCGAAGGAATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
47104320 TTATATCCGGGCTATGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
47104359 TTATATCCGGGCCATGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
47104398 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
47104437 TTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
47104464 ATTGTGTTGG
Statistics
Matches: 169, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 14 0.08
39 155 0.92
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:47112186 original size:29 final size:29
Alignment explanation
Indices: 47112153--47112211 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
47112143 ATTGCCAAGC
47112153 CGTGTTCACTCCGTTAAATTGCACACGGT
1 CGTGTTCACTCCGTTAAATTGCACACGGT
* * * *
47112182 CGTGTTCGCTCTGTTAAATTGTACATGGT
1 CGTGTTCACTCCGTTAAATTGCACACGGT
47112211 C
1 C
47112212 ATGTGAATCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (29 bp):
CGTGTTCACTCCGTTAAATTGCACACGGT
Found at i:47114223 original size:6 final size:6
Alignment explanation
Indices: 47114214--47114287 Score: 98
Period size: 6 Copynumber: 12.5 Consensus size: 6
47114204 AATAAAATTG
*
47114214 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA ATAA-AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATAA
* *
47114262 AAATAA ATA-AA AAATAA GAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
47114288 GATAGGAAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
5 6 0.10
6 52 0.87
7 2 0.03
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:47116397 original size:55 final size:53
Alignment explanation
Indices: 47116295--47116409 Score: 142
Period size: 55 Copynumber: 2.1 Consensus size: 53
47116285 TGGAGGAAGC
* *
47116295 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCCCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACCCTGCCAC-AATATAT
* ** *
47116349 GTTTCTGGTGGCTCTGCCA-TAATATCTGTATCTGGTGATTCTGTCACAATATAT
1 G-TTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACCCTGCCACAATATAT
47116403 GTTCTGG
1 GTTCTGG
47116410 CGACCATGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
53 6 0.11
54 16 0.30
55 31 0.58
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACCCTGCCACAATATAT
Found at i:47116400 original size:27 final size:28
Alignment explanation
Indices: 47116297--47116385 Score: 137
Period size: 27 Copynumber: 3.2 Consensus size: 28
47116287 GAGGAAGCGT
47116297 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
47116324 TCTGGTGGCCCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
47116352 TCTGGTGGCTCTGCCA-TAATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
47116379 TCTGGTG
1 TCTGGTG
47116386 ATTCTGTCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 41 0.73
28 15 0.27
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.34
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:47125920 original size:44 final size:45
Alignment explanation
Indices: 47125866--47126078 Score: 209
Period size: 47 Copynumber: 4.6 Consensus size: 45
47125856 TACCCGTGCT
* *
47125866 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGG-C
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTAGGCC
* * *
47125910 GATGCGTGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCT-T--AGGCC
*
47125957 GATGCATGTCCCAGACATGTCTTACACTGGCAC-TCATCTTTGTGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACATC-TCTTAG-GCC
* ** *
47126003 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TATCATAGTATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACATC-TCTTA-GGCC
* *
47126051 AATGCATGTCCAAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
47126079 AGCCCTTGTC
Statistics
Matches: 142, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
43 5 0.04
44 29 0.20
45 1 0.01
46 20 0.14
47 60 0.42
48 26 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTAGGCC
Found at i:47125970 original size:47 final size:45
Alignment explanation
Indices: 47125866--47126172 Score: 203
Period size: 47 Copynumber: 6.6 Consensus size: 45
47125856 TACCCGTGCT
* * *
47125866 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTT-AGG-C
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTTGAGGCC
* *
47125910 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCT-T-GAGGCC
*
47125957 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTTTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TC-TC-TTGAGGCC
* * *
47126003 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-ATAGTATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTCTTG-A-GGCC
* * * * * * *
47126051 AATGCATGTCCAAGACATGTCTTACACTAGCCCT-TGTCTGGATGCT
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTATCTCTTGAGGCC
* * * * * * ** *
47126097 AATATCATGTCTCAGACATGGTCTTACACTGACTCTAGTAATGTGGCC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTAT-CTCTTGAGGCC
*
47126145 GAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
47126173 AGCGCACAAA
Statistics
Matches: 210, Mismatches: 33, Indels: 38
0.75 0.12 0.14
Matches are distributed among these distances:
43 5 0.02
44 29 0.14
45 2 0.01
46 39 0.19
47 90 0.43
48 43 0.20
49 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTTGAGGCC
Found at i:47126069 original size:94 final size:90
Alignment explanation
Indices: 47125816--47126175 Score: 282
Period size: 94 Copynumber: 3.9 Consensus size: 90
47125806 ATATATTGCT
* * *
47125816 GATGTCATGTCCCAAACATGGACTTACACTGGCTCTCATA-TACCCGTGCTGATGCATGTCCCAG
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA---G-GCTGATGCATGTCCCAG
47125880 ACATGTCTTACACTAGCACAACTCTTAGGC
61 ACATGTCTTACACTAGCACAACTCTTAGGC
* * * *
47125910 GATGCGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGCCGATGCATGTCCCAGAC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--AGGCTGATGCATGTCCCAGAC
* * *
47125973 ATGTCTTACACTGGCAC-TCATCTTTGTGCC
63 ATGTCTTACACTAGCACAAC-TCTTAG-G-C
* *
47126003 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTAATGCATGTCCAAGACA
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA-GGCTGATGCATGTCCCAGACA
* *** * *
47126068 TGTCTTACACTAGCCCTTGTCTGGATGC
64 TGTCTTACACTAGCACAACTCT-TAGGC
* * * * * * *
47126096 TAATATCATGTCTCAGACATGGTCTTACACTGACTCT-AGTAATGT-GGCCGAAGCATGTCCCAG
1 -GAT-GCATGTCCCAGACATGGTCTTACACTGGCTATCA-T-A-GTAGGCTGATGCATGTCCCAG
47126159 ACATGTCTTACACTAGC
61 ACATGTCTTACACTAGC
47126176 GCACAAATCA
Statistics
Matches: 217, Mismatches: 31, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
90 1 0.00
91 40 0.18
92 17 0.08
93 20 0.09
94 114 0.53
95 22 0.10
96 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (90 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAGGCTGATGCATGTCCCAGACATG
TCTTACACTAGCACAACTCTTAGGC
Found at i:47126549 original size:30 final size:30
Alignment explanation
Indices: 47126515--47126572 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
47126505 AAATTTACAT
* *
47126515 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
47126545 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
47126573 TGCCCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:47128377 original size:47 final size:47
Alignment explanation
Indices: 47128254--47128383 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
47128244 GTGAAAATGA
* * * * *
47128254 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTTCAAAGAGGAGT
1 TACCTTGATTTGGCTACGAGTCATGGTATAGGTA-CTCAAAGAGAAGT
* *** *
47128302 TACCTTGATTTGGCTACGA-TCATAGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGAGTCATGGTATAGGTACTCAAAGAGAAGT
47128348 TACCTTGATTTGGCTACGAGTCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGAGTCATGGTATAGGTACT
47128384 TATCGATTGT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 26 0.37
47 27 0.39
48 17 0.24
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGAGTCATGGTATAGGTACTCAAAGAGAAGT
Found at i:47132401 original size:11 final size:12
Alignment explanation
Indices: 47132384--47132413 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
47132374 TTCAGTGGTT
47132384 AAGTGTTCTGAG
1 AAGTGTTCTGAG
47132396 -AGTGTTCTGAG
1 AAGTGTTCTGAG
47132407 AAGTGTT
1 AAGTGTT
47132414 GAAGAACTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.23, C:0.07, G:0.33, T:0.37
Consensus pattern (12 bp):
AAGTGTTCTGAG
Found at i:47135021 original size:28 final size:28
Alignment explanation
Indices: 47134958--47135080 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
47134948 ATATTAAGTC
*
47134958 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
47134985 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
47135013 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
47135041 CACACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
47135070 CGCACACTTAG
1 CGCACACTTAG
47135081 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.26
28 48 0.56
29 15 0.18
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:47136994 original size:27 final size:27
Alignment explanation
Indices: 47136937--47136997 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
47136927 ACCTCGATTT
* * *
47136937 GTAAAATTACTAAAATACCCTTGTAGT
1 GTAAAATTACCAAAATACCCTTATAGG
*
47136964 GTAAAATTACCGAAATACCAC-TATAGG
1 GTAAAATTACCAAAATACC-CTTATAGG
47136991 GTAAAAT
1 GTAAAAT
47136998 AACTGTTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCTTATAGG
Found at i:47139817 original size:25 final size:25
Alignment explanation
Indices: 47139789--47139839 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
47139779 AATACCAAAA
* *
47139789 TACCCTCTAGGGTAAAATGACT-ATT
1 TACCCTCGAAGGT-AAATGACTGATT
47139814 TACCCTCGAAGGTAAATGACTGATT
1 TACCCTCGAAGGTAAATGACTGATT
47139839 T
1 T
47139840 GTTTGTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (25 bp):
TACCCTCGAAGGTAAATGACTGATT
Found at i:47142135 original size:47 final size:47
Alignment explanation
Indices: 47142082--47142209 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 47
47142072 CACAATCGAT
*
47142082 AAGTACCTATACCATGGCCTGTAGCAAAATCAAGGTAACT-TATCCCG
1 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCT-TCCCG
* *
47142129 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCCTTTCTG
1 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACT-CTTCCCG
* * *
47142177 AAATACCTATATCATGGCCCGTAGCCAAATCAA
1 AAGTACCTATACCATGGCCTGTAGCCAAATCAA
47142210 TGTATCATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 39 0.53
48 33 0.45
49 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCTTCCCG
Found at i:47149080 original size:27 final size:27
Alignment explanation
Indices: 47149050--47149227 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
47149040 ATATTGAGCC
* * *
47149050 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
47149077 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
47149104 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
47149132 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
47149159 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
47149186 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
47149213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47149228 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:47149143 original size:55 final size:55
Alignment explanation
Indices: 47149050--47149227 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
47149040 ATATTGAGCC
* * *
47149050 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
47149104 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
47149159 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
47149213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47149228 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:47149189 original size:82 final size:81
Alignment explanation
Indices: 47149071--47149226 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
47149061 TGCTATACAA
* * *
47149071 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
47149136 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
47149153 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
47149217 CACTTAGTGC
65 CACTTAGTGC
47149227 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47151690 original size:45 final size:47
Alignment explanation
Indices: 47151604--47151696 Score: 129
Period size: 45 Copynumber: 2.0 Consensus size: 47
47151594 GATACTCGAG
* *
47151604 AATCTTGCACCCTAAGTGCCAATATATATAGCCGAAGCTATCTCAATA
1 AATCTTGCA-CCTAAGTGCCAATATACATAGCCGAAACTATCTCAATA
47151652 AATCTTGCA-CTGAAGTGCC-A-ATACATAGCCGAAACTATCTCAATA
1 AATCTTGCACCT-AAGTGCCAATATACATAGCCGAAACTATCTCAATA
47151697 TCATATTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
45 23 0.55
46 3 0.07
47 7 0.17
48 9 0.21
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.26
Consensus pattern (47 bp):
AATCTTGCACCTAAGTGCCAATATACATAGCCGAAACTATCTCAATA
Found at i:47163369 original size:18 final size:17
Alignment explanation
Indices: 47163346--47163382 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
47163336 GAATACCTTC
*
47163346 TTTTCCCTTCTCTGCTCT
1 TTTTCCC-TCTCTACTCT
47163364 TTTTCCCTCTCTACTCT
1 TTTTCCCTCTCTACTCT
47163381 TT
1 TT
47163383 CAGCTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.03, C:0.38, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTTCCCTCTCTACTCT
Found at i:47164683 original size:34 final size:34
Alignment explanation
Indices: 47164611--47164676 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
47164601 GCATATATAT
*
47164611 ACTGTTACTGTCACTGAATTGGGCTAAGGCCCAC
1 ACTGATACTGTCACTGAATTGGGCTAAGGCCCAC
* *
47164645 ACTGATACTGTTACTGTAA-TGGGTTAAGGCCC
1 ACTGATACTGTCACTG-AATTGGGCTAAGGCCC
47164677 TAACTGAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (34 bp):
ACTGATACTGTCACTGAATTGGGCTAAGGCCCAC
Found at i:47170555 original size:22 final size:22
Alignment explanation
Indices: 47170521--47170589 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
47170511 TATGCACTAT
* *
47170521 TAAACAGAGAGCACAAAAGTGT
1 TAAACAGATAGCACAAAAGTGC
* * *
47170543 TATACAGATAGCACAGATGTGC
1 TAAACAGATAGCACAAAAGTGC
* *
47170565 TAAACAGATAGCACTAATGTGC
1 TAAACAGATAGCACAAAAGTGC
47170587 TAA
1 TAA
47170590 TAATCAAAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (22 bp):
TAAACAGATAGCACAAAAGTGC
Found at i:47178460 original size:79 final size:81
Alignment explanation
Indices: 47178324--47178508 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
47178314 TTGAATGATG
*
47178324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
47178388 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
47178403 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47178465 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
47178483 ACCGGGCTATGTCCCTAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47178509 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:47178515 original size:40 final size:40
Alignment explanation
Indices: 47178324--47178508 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
47178314 TTGAATGATG
* * * *
47178324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
47178364 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
47178404 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47178443 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
47178484 -CCGGGCTATGTCCCTAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47178509 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47178530 original size:79 final size:79
Alignment explanation
Indices: 47178377--47178541 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47178367 GGACTAAGAT
* **
47178377 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47178442 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
47178456 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCTAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47178519 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47178535 CCGAAGG
1 CCGAAGG
47178542 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47182787 original size:47 final size:46
Alignment explanation
Indices: 47182717--47182847 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 46
47182707 CTCAATCGGT
* *
47182717 AAGTACCTATACCATGGCCCGTAGCCAAATTAAGGTAACTTATCTCG
1 AAGTACCTATACCATGG-CCGTAGCCAAATTAAGGTAACTCATCTCA
* * *
47182764 GAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGC-CGTAGCCAAATTAAGGTAACTCATCTCA
* *
47182811 AAATACCTATATCATGGCCTGTAGCCAAATTAAGGTA
1 AAGTACCTATACCATGGCC-GTAGCCAAATTAAGGTA
47182848 TTACTCGCAC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 2 0.03
47 71 0.97
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (46 bp):
AAGTACCTATACCATGGCCGTAGCCAAATTAAGGTAACTCATCTCA
Found at i:47188705 original size:39 final size:38
Alignment explanation
Indices: 47188648--47188899 Score: 360
Period size: 39 Copynumber: 6.5 Consensus size: 38
47188638 CAGGACTTTA
* * *
47188648 AGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACAATGCCTTCGGGAC-TT
*
47188687 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTT
47188726 AGCCCGGATATAACACCAGCACCAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCA-CAATGCCTTCGGGACTT
* *
47188765 AGCCCGGATATAACACTAGGACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTT
* *
47188804 AGCCCGGATATAACACCAGCATGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCA-CAATGCCTTCGGGACTT
* *
47188843 AACCCGGATATAACACCAACACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTT
47188882 AGCCCGGATATAACACCA
1 AGCCCGGATATAACACCA
47188900 TTATAAAGTC
Statistics
Matches: 192, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 179 0.93
40 12 0.06
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (38 bp):
AGCCCGGATATAACACCAGCACAATGCCTTCGGGACTT
Found at i:47189005 original size:28 final size:28
Alignment explanation
Indices: 47188972--47189037 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
47188962 ATTTAATCAT
**
47188972 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCACACACTAAGTGTCATTC
* *
47189000 TCAATATCTCACACATTAAGTGTCATTC
1 TCAATATTTCACACACTAAGTGTCATTC
47189028 TCAATATTTC
1 TCAATATTTC
47189038 GTACACTGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (28 bp):
TCAATATTTCACACACTAAGTGTCATTC
Found at i:47196073 original size:41 final size:41
Alignment explanation
Indices: 47196044--47196163 Score: 168
Period size: 41 Copynumber: 2.9 Consensus size: 41
47196034 CGTTTGGACC
* *
47196044 AAAAACGCCGCAAAAGGTCAAGCAGTAGTGTCGTTTATGAG
1 AAAAACGCCGCAAAAGGTCAAGTAGTAGTGGCGTTTATGAG
* * *
47196085 AAAAATGCCGTAAAAGGTCAAGTAGTAGCGGCGTTTATGAG
1 AAAAACGCCGCAAAAGGTCAAGTAGTAGTGGCGTTTATGAG
* * *
47196126 AAAAACGCCACAAAAGGTCAAGTAGTAGCGGCATTTAT
1 AAAAACGCCGCAAAAGGTCAAGTAGTAGTGGCGTTTAT
47196164 ATATGAGAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (41 bp):
AAAAACGCCGCAAAAGGTCAAGTAGTAGTGGCGTTTATGAG
Found at i:47196913 original size:27 final size:27
Alignment explanation
Indices: 47196871--47196962 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 27
47196861 AACCCATCTT
47196871 TACATCGCCG--GACCCGACCATCTG-
1 TACATCGCCGTCGACCCGACCATCTGC
*
47196895 TCACCTCGCCGTCGACCCGACCATCTGC
1 T-ACATCGCCGTCGACCCGACCATCTGC
*
47196923 TACATCGCCGTTGACCCGACCATCTGC
1 TACATCGCCGTCGACCCGACCATCTGC
* *
47196950 TGCGTCGCCGTCG
1 TACATCGCCGTCG
47196963 CACTCCTCTA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 1 0.02
25 8 0.14
27 48 0.83
28 1 0.02
ACGTcount: A:0.15, C:0.43, G:0.22, T:0.20
Consensus pattern (27 bp):
TACATCGCCGTCGACCCGACCATCTGC
Found at i:47198969 original size:22 final size:22
Alignment explanation
Indices: 47198944--47199024 Score: 56
Period size: 22 Copynumber: 3.5 Consensus size: 22
47198934 TTCTAAATTT
47198944 TTATTTTTATTTATATAAATAA
1 TTATTTTTATTTATATAAATAA
* *** *
47198966 TTATTATTCAAAGATATACAATTAG
1 TTATT-TTTATTTATATA-AA-TAA
*
47198991 TTATTTTTATTTAT-TTAATAA
1 TTATTTTTATTTATATAAATAA
*
47199012 TATATTTCTATTT
1 T-TATTTTTATTT
47199025 CATGTAATAT
Statistics
Matches: 43, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
21 3 0.07
22 17 0.40
23 9 0.21
24 7 0.16
25 7 0.16
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (22 bp):
TTATTTTTATTTATATAAATAA
Found at i:47199454 original size:9 final size:9
Alignment explanation
Indices: 47199427--47199517 Score: 68
Period size: 9 Copynumber: 10.6 Consensus size: 9
47199417 TTTTTTAATG
47199427 CATAACTTA
1 CATAACTTA
**
47199436 GTTAACTTA
1 CATAACTTA
*
47199445 CATAATTTA
1 CATAACTTA
47199454 CATAACTTA
1 CATAACTTA
* *
47199463 AATAA-ATA
1 CATAACTTA
47199471 TCAT-A--T-
1 -CATAACTTA
47199477 CATAACTTA
1 CATAACTTA
47199486 CATAACTTA
1 CATAACTTA
*
47199495 CCA-AATTTA
1 -CATAACTTA
47199504 CATAACTTA
1 CATAACTTA
47199513 CATAA
1 CATAA
47199518 ATAAATATCA
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
5 3 0.05
6 1 0.02
7 1 0.02
8 6 0.09
9 51 0.80
10 2 0.03
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:47199459 original size:18 final size:18
Alignment explanation
Indices: 47199438--47199554 Score: 77
Period size: 18 Copynumber: 6.7 Consensus size: 18
47199428 ATAACTTAGT
47199438 TAACTTACATAATTTACA
1 TAACTTACATAATTTACA
* *
47199456 TAACTTAAATAA-ATATCA
1 TAACTTACATAATTTA-CA
*
47199474 T-A--T-CATAACTTACA
1 TAACTTACATAATTTACA
47199488 TAACTTACCA-AATTTACA
1 TAACTTA-CATAATTTACA
* *
47199506 TAACTTACATAA-ATAAA
1 TAACTTACATAATTTACA
* * *
47199523 TATCATATCGTAATTTACA
1 TAACTTA-CATAATTTACA
*
47199542 TAACTTACGTAAT
1 TAACTTACATAAT
47199555 ACATAAATAT
Statistics
Matches: 75, Mismatches: 14, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
14 7 0.09
15 4 0.05
17 14 0.19
18 40 0.53
19 10 0.13
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (18 bp):
TAACTTACATAATTTACA
Found at i:47199502 original size:50 final size:53
Alignment explanation
Indices: 47199427--47199549 Score: 164
Period size: 54 Copynumber: 2.4 Consensus size: 53
47199417 TTTTTTAATG
**
47199427 CATAACTTAGTTAACTTA-CATAATTTACATAAC-T-TAAATAAATATCATAT
1 CATAACTTACATAACTTACCATAATTTACATAACTTATAAATAAATATCATAT
47199477 CATAACTTACATAACTTACCA-AATTTACATAACTTACATAAATAAATATCATAT
1 CATAACTTACATAACTTACCATAATTTACATAACTT--ATAAATAAATATCATAT
* *
47199531 CGTAATTTACATAACTTAC
1 CATAACTTACATAACTTAC
47199550 GTAATACATA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
50 28 0.44
51 3 0.05
54 33 0.52
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.36
Consensus pattern (53 bp):
CATAACTTACATAACTTACCATAATTTACATAACTTATAAATAAATATCATAT
Found at i:47203913 original size:153 final size:153
Alignment explanation
Indices: 47203635--47203942 Score: 433
Period size: 153 Copynumber: 2.0 Consensus size: 153
47203625 ATTATTTTGG
* * * * * *
47203635 TGATTGTATATTATAAATGATGTGATTAAGTTATTAATGTGGAATGATGTGTATATTTCAATTCT
1 TGATTGTATACTATAAATGATGTGATTAAATGATTAACGTGAAATGATGTGTATATTCCAATTCT
* *
47203700 CATGACGTGATTTTATGACGAAATTGATTATGCATGATATATATATATGTTTTAATCATGCTACT
66 CATGACGTGATTTTATGACGAAATTAATTACGCATGATATATATATATGTTTTAATCATGCTACT
47203765 ATTATATTAATTGACATTTGATT
131 ATTATATTAATTGACATTTGATT
* *
47203788 TGATTGTATGCTATAAATGATGTGATTAAATGATTAACGTGAAATTATGTGTAT-TTACCAATTC
1 TGATTGTATACTATAAATGATGTGATTAAATGATTAACGTGAAATGATGTGTATATT-CCAATTC
* * **
47203852 TTATTACATGTGATTTTATGGTGAAATTAATTACGCATGATAT-T-TATATGTTTTAATCATGCT
65 TCATGAC--GTGATTTTATGACGAAATTAATTACGCATGATATATATATATGTTTTAATCATGCT
*
47203915 ACTGTTATATTAATTGACATTTGATT
128 ACTATTATATTAATTGACATTTGATT
47203941 TG
1 TG
47203943 CATGTTAAGC
Statistics
Matches: 137, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
152 2 0.01
153 104 0.76
154 1 0.01
155 30 0.22
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (153 bp):
TGATTGTATACTATAAATGATGTGATTAAATGATTAACGTGAAATGATGTGTATATTCCAATTCT
CATGACGTGATTTTATGACGAAATTAATTACGCATGATATATATATATGTTTTAATCATGCTACT
ATTATATTAATTGACATTTGATT
Found at i:47203980 original size:42 final size:42
Alignment explanation
Indices: 47203933--47204036 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
47203923 ATTAATTGAC
*
47203933 ATTTGATTTGCATGTTAAGCAAGCT-GACTATGATAAACTGAT
1 ATTTGATTTGCATGTTAAGCAAG-TAGACTATGATAAACTGAG
* * * * *
47203975 ATTTGATTTGCATGTTAAGCATGTAGACTATGTTGATCTTAG
1 ATTTGATTTGCATGTTAAGCAAGTAGACTATGATAAACTGAG
*
47204017 ATTTGATTTGCATATTAAGC
1 ATTTGATTTGCATGTTAAGC
47204037 GTGCCTATTG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.02
42 53 0.98
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (42 bp):
ATTTGATTTGCATGTTAAGCAAGTAGACTATGATAAACTGAG
Found at i:47206566 original size:20 final size:20
Alignment explanation
Indices: 47206541--47206586 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
47206531 AGACTATGAA
47206541 CCATTCCATCTACTTACTTT
1 CCATTCCATCTACTTACTTT
*
47206561 CCATTCCATTTACTTACTTT
1 CCATTCCATCTACTTACTTT
*
47206581 ACATTC
1 CCATTC
47206587 ATTTACTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.46
Consensus pattern (20 bp):
CCATTCCATCTACTTACTTT
Found at i:47207402 original size:40 final size:40
Alignment explanation
Indices: 47207358--47207486 Score: 170
Period size: 40 Copynumber: 3.2 Consensus size: 40
47207348 GGGAATTGAT
* * *
47207358 GTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACATAA
1 GTGCAATCAAGGGTACCGAAGTACAAACAAGGGCACGTAA
* * *
47207398 GTGCAATCAAGGGCACCAAATTACAAACAAGGGCACGTAA
1 GTGCAATCAAGGGTACCGAAGTACAAACAAGGGCACGTAA
* *
47207438 GTGCAATCAAGGGTATCGAAGTACAAA-TAGCGGCACGTAA
1 GTGCAATCAAGGGTACCGAAGTACAAACAAG-GGCACGTAA
47207478 GTGCAATCA
1 GTGCAATCA
47207487 TTCAATAATT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.03
40 75 0.97
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.16
Consensus pattern (40 bp):
GTGCAATCAAGGGTACCGAAGTACAAACAAGGGCACGTAA
Found at i:47207408 original size:20 final size:20
Alignment explanation
Indices: 47207385--47207450 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
47207375 GAAGTACAAA
47207385 CAAGGGCACATAAGTGCAAT
1 CAAGGGCACATAAGTGCAAT
* * *
47207405 CAAGGGCACCA-AATTACAAA
1 CAAGGGCA-CATAAGTGCAAT
*
47207425 CAAGGGCACGTAAGTGCAAT
1 CAAGGGCACATAAGTGCAAT
47207445 CAAGGG
1 CAAGGG
47207451 TATCGAAGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 1 0.03
20 34 0.92
21 2 0.05
ACGTcount: A:0.41, C:0.21, G:0.26, T:0.12
Consensus pattern (20 bp):
CAAGGGCACATAAGTGCAAT
Found at i:47207459 original size:20 final size:19
Alignment explanation
Indices: 47207374--47207486 Score: 68
Period size: 20 Copynumber: 5.7 Consensus size: 19
47207364 TCAGGGGTAC
* *
47207374 CGAAGTACAAACAAGGGCA
1 CGAAGTGCAATCAAGGGCA
*
47207393 CATAAGTGCAATCAAGGGCA
1 C-GAAGTGCAATCAAGGGCA
* * * *
47207413 CCAAATTACAAACAAGGGCA
1 -CGAAGTGCAATCAAGGGCA
*
47207433 CGTAAGTGCAATCAAGGGTA
1 CG-AAGTGCAATCAAGGGCA
*
47207453 TCGAAGTACAA--ATAGCGGCA
1 -CGAAGTGCAATCA-AG-GGCA
47207473 CGTAAGTGCAATCA
1 CG-AAGTGCAATCA
47207487 TTCAATAATT
Statistics
Matches: 70, Mismatches: 15, Indels: 15
0.70 0.15 0.15
Matches are distributed among these distances:
18 1 0.01
19 6 0.09
20 59 0.84
21 3 0.04
22 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.14
Consensus pattern (19 bp):
CGAAGTGCAATCAAGGGCA
Found at i:47216317 original size:26 final size:26
Alignment explanation
Indices: 47216282--47216332 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
47216272 AATGTGAAAG
*
47216282 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47216308 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
47216333 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47216415 original size:26 final size:26
Alignment explanation
Indices: 47216380--47216431 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
47216370 GAAATGAAAG
*
47216380 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47216406 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47216432 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47216515 original size:26 final size:26
Alignment explanation
Indices: 47216479--47216531 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
47216469 TTGAAATAAA
*
47216479 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
47216505 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
47216531 A
1 A
47216532 TTCAGTGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.23, G:0.34, T:0.28
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:47216528 original size:100 final size:100
Alignment explanation
Indices: 47216204--47216563 Score: 582
Period size: 100 Copynumber: 3.6 Consensus size: 100
47216194 TGTATATAAA
** * * *
47216204 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGT-ATCCACCATATCTT
47216269 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCG
47216307 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCG-ATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTATCCACCATATCTTT
47216370 GAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 GAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
47216405 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCTT
*
47216470 TGAAAT-AAAAGGGGTTGCTATGTGCTGATTCCCCG
65 TGAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
47216505 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TATCCACCA
47216564 ATAACGGTTA
Statistics
Matches: 246, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
98 57 0.23
99 22 0.09
100 104 0.42
101 20 0.08
102 19 0.08
103 24 0.10
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (100 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTATCCACCATATCTTT
GAAATGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:47223891 original size:26 final size:26
Alignment explanation
Indices: 47223856--47223907 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
47223846 AATGTGAAAG
*
47223856 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47223882 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47223908 TTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47223961 original size:103 final size:104
Alignment explanation
Indices: 47223778--47223985 Score: 332
Period size: 104 Copynumber: 2.0 Consensus size: 104
47223768 TGTATATAAA
* *
47223778 AGGGGTTGCTATGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
* *
47223843 TGAAATGTGAAA-GGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTAAAAGGGGGGTTGCTAAGTGCTGATTCCCCG
*
47223881 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTT-ATGGGTGGTGCTAAGTGCG-TGATCCACCATATC
47223945 TTTGAAATG-AAAAGGGGGGTTGCTAAGTGCTGATTCCCCG
64 TTTGAAATGTAAAAGGGGGGTTGCTAAGTGCTGATTCCCCG
47223985 A
1 A
47223986 TTCATTAGTG
Statistics
Matches: 97, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
103 32 0.33
104 64 0.66
105 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTTATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTAAAAGGGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:47224014 original size:77 final size:77
Alignment explanation
Indices: 47223882--47224061 Score: 317
Period size: 77 Copynumber: 2.3 Consensus size: 77
47223872 GATTCCCCGA
*
47223882 GGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTTCATTAGTGGTGCTAAGTGCGATATCCACCATATCTT
*
47223947 TGAAATGAAAAGG
66 TGAAAT-AAAAAG
47223960 GGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTAGTGGTGCTAAGTGCGATATCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTTCATTAGTGGTGCTAAGTGCGATATCCACCATATCTT
47224024 TGAAATAAAAAG
66 TGAAATAAAAAG
*
47224036 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47224062 GGGGTTGCTA
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
76 30 0.30
77 43 0.43
78 26 0.26
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (77 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTTCATTAGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATAAAAAG
Found at i:47224071 original size:26 final size:26
Alignment explanation
Indices: 47224036--47224087 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
47224026 AAATAAAAAG
*
47224036 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47224062 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
47224088 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:47228698 original size:37 final size:38
Alignment explanation
Indices: 47228650--47228722 Score: 139
Period size: 37 Copynumber: 1.9 Consensus size: 38
47228640 TGGAAATTAA
47228650 TAATTTAATTGTTAATAAGTG-TTTTTTTATGGATGAT
1 TAATTTAATTGTTAATAAGTGTTTTTTTTATGGATGAT
47228687 TAATTTAATTGTTAATAAGTGTTTTTTTTATGGATG
1 TAATTTAATTGTTAATAAGTGTTTTTTTTATGGATG
47228723 CCGAATGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 21 0.60
38 14 0.40
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (38 bp):
TAATTTAATTGTTAATAAGTGTTTTTTTTATGGATGAT
Found at i:47230302 original size:31 final size:31
Alignment explanation
Indices: 47230265--47230392 Score: 126
Period size: 31 Copynumber: 4.4 Consensus size: 31
47230255 AATCAAAATG
47230265 AGAATCAGAATCAGAATCAAGTGACAGAATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
47230296 AGAATCAGAATCAG----AA-T--CAGAATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
* * *
47230320 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
* * * *
47230351 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
* *
47230382 AAAATTAGAAT
1 AGAATCAGAAT
47230393 GTGAAGGCAA
Statistics
Matches: 81, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
24 21 0.26
26 1 0.01
27 2 0.02
28 1 0.01
29 1 0.01
31 55 0.68
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAGTGACAGAATC
Found at i:47230328 original size:55 final size:55
Alignment explanation
Indices: 47230244--47230392 Score: 176
Period size: 55 Copynumber: 2.7 Consensus size: 55
47230234 AAGAAACATT
* *
47230244 ATCAGAA-CTAGAATCAAAATGAGAATCAGAATCAGAATCAAGTGACAGAATCAGA
1 ATCAGAATC-AGAATCAGAATCAGAATCAGAATCAGAATCAAGTGACAGAATCAGA
* * *
47230299 ATCAGAATCAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATTAGA
1 ATCAGAATCAGAATCAGAATCAGAATCAGAATCAGAATCAAGTGACAGAATCAGA
* * * *
47230354 ATCAGAATTAGTATCAGGTAA-CAGAATCAAAATTAGAAT
1 ATCAGAATCAGAATCA-G-AATCAGAATCAGAATCAGAAT
47230393 GTGAAGGCAA
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
55 62 0.76
56 18 0.22
57 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (55 bp):
ATCAGAATCAGAATCAGAATCAGAATCAGAATCAGAATCAAGTGACAGAATCAGA
Found at i:47230355 original size:6 final size:6
Alignment explanation
Indices: 47230244--47230336 Score: 118
Period size: 6 Copynumber: 15.3 Consensus size: 6
47230234 AAGAAACATT
* * *
47230244 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
47230293 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
47230337 TAGGTGACAG
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
5 3 0.04
6 68 0.89
7 3 0.04
8 2 0.03
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:47230559 original size:27 final size:26
Alignment explanation
Indices: 47230511--47230570 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
47230501 GCGAGGCTGC
*
47230511 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
47230538 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
47230564 CAGATAT
1 CAGATAT
47230571 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47230926 original size:27 final size:27
Alignment explanation
Indices: 47230896--47231278 Score: 410
Period size: 27 Copynumber: 14.2 Consensus size: 27
47230886 AACACCCTAG
* *
47230896 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
47230923 GGGTAAAA-CGATAATTCTATAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
* * *
47230950 AGGTAAAATAGTAATTTTGTAAACCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
47230977 GGGTGAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * * * *
47231004 GTGTAAAACAGTAATTCTATAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
47231031 AGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
47231058 AGGTAAAAT-GATAATTCTGTAAATCGA
1 GGGTAAAATAG-TAATTTTGTAAATCGA
*
47231085 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * * *
47231112 GGGTAAAATAGTAACTCTATAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
47231139 GGGTAAAACAATAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* ** *
47231166 TGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
47231193 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
47231220 AGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
47231247 GGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
47231274 GGGTA
1 GGGTA
47231279 CTTTGATAAT
Statistics
Matches: 303, Mismatches: 49, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 299 0.99
28 2 0.01
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:47231288 original size:54 final size:54
Alignment explanation
Indices: 47230896--47231332 Score: 389
Period size: 54 Copynumber: 8.1 Consensus size: 54
47230886 AACACCCTAG
* * *
47230896 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAC-GATAATTCTATAAATCGA
1 GGGTAAAATGATAATTTTATAAATCGAGGGTAAAACAG-TAATTTTGTAAATCGA
* * * * * *
47230950 AGGTAAAAT-AGTAATTTTGTAAACCAAGGGTGAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGA-TAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
* * * * * * *
47231004 GTGTAAAA-CAGTAATTCTATAAATCAAAGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAATGA-TAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
47231058 AGGTAAAATGATAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATGATAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
47231112 GGGTAAAAT-AGTAACTCTATAAATTGAGGGTAAAACAATAATTCTGTAAATCGA
1 GGGTAAAATGA-TAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
47231166 TGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATGATAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
* ** * *
47231220 AGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAATGATAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
*** * * *** *
47231274 GGGTACTTTGATAATTTTACATATCGAGGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTAAAATGATAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATC-GA
47231328 GGGTA
1 GGGTA
47231333 TTTTGGTAAT
Statistics
Matches: 316, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.01
54 312 0.99
55 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (54 bp):
GGGTAAAATGATAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
Found at i:47231300 original size:27 final size:26
Alignment explanation
Indices: 47231270--47231403 Score: 126
Period size: 27 Copynumber: 5.0 Consensus size: 26
47231260 ATTTTGTAAT
* *
47231270 TCGAGGGTACTTTGATAATTTTACATA
1 TCGAGGGTA-TTTGGTAATTTTACAAA
* *
47231297 TCGAGGGTATTTCAGTAATTTTGCAAA
1 TCGAGGGTATTT-GGTAATTTTACAAA
47231324 -CTGAGGGTATTTTGGTAATTTTACAAA
1 TC-GAGGGTA-TTTGGTAATTTTACAAA
* * *
47231351 TCAAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTT-GGTAATTTTACAAA
* *
47231378 CCGGGGGTACTTTGGTAATTTTACAA
1 TCGAGGGTA-TTTGGTAATTTTACAA
47231404 CTAAGGGTAT
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
26 7 0.08
27 73 0.84
28 7 0.08
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
TCGAGGGTATTTGGTAATTTTACAAA
Found at i:47231343 original size:54 final size:52
Alignment explanation
Indices: 47231255--47231424 Score: 180
Period size: 54 Copynumber: 3.2 Consensus size: 52
47231245 GAGGGTAAAA
* * * *
47231255 CAGTAATTTTGTAATTCGAGGGTACTTTGATAATTTTACATATCGAGGGTATTT
1 CAGTAATTTTGAAACT-GAGGGTACTTTGGTAATTTTACA-ATCAAGGGTATTT
* *
47231309 CAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAATCAAGGATATTT
1 CAGTAATTTTG-AAACTGAGGGTACTTTGGTAATTTTAC-AATCAAGGGTATTT
** * * *
47231363 GGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA-CTAAGGGTATTT
1 CAGTAATTTT-GAAACTGAGGGTACTTTGGTAATTTTACAATC-AAGGGTATTT
47231416 CAGTAATTT
1 CAGTAATTT
47231425 CGTAAATTAA
Statistics
Matches: 97, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 18 0.19
54 74 0.76
55 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (52 bp):
CAGTAATTTTGAAACTGAGGGTACTTTGGTAATTTTACAATCAAGGGTATTT
Found at i:47231421 original size:26 final size:26
Alignment explanation
Indices: 47231300--47231424 Score: 99
Period size: 27 Copynumber: 4.7 Consensus size: 26
47231290 TTACATATCG
* * *
47231300 AGGGTATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTAC-AACTA
* *
47231327 AGGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAACT-A
* * * **
47231354 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTA-CAACTA
*
47231381 GGGGTACTTT-GGTAATTTTACAACTA
1 AGGGTA-TTTCGGTAATTTTACAACTA
*
47231407 AGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
47231425 CGTAAATTAA
Statistics
Matches: 76, Mismatches: 18, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
25 3 0.04
26 18 0.24
27 50 0.66
28 5 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAACTA
Found at i:47232565 original size:30 final size:30
Alignment explanation
Indices: 47232531--47232592 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
47232521 TACCGCTACG
*
47232531 CACTCTGATCGTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
47232561 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
47232591 CA
1 CA
47232593 ACTAGAACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.35, G:0.05, T:0.32
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:47236412 original size:6 final size:6
Alignment explanation
Indices: 47236382--47236481 Score: 53
Period size: 6 Copynumber: 16.3 Consensus size: 6
47236372 AAGAAACATT
* * * * *
47236382 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAG- GTGACAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
47236431 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
47236480 AT
1 AT
47236482 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 18, Indels: 16
0.67 0.18 0.16
Matches are distributed among these distances:
5 3 0.04
6 58 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:47236478 original size:31 final size:31
Alignment explanation
Indices: 47236396--47236481 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
47236386 GAACTAGAAT
* *
47236396 CAAAATGAGAATCAGAATCAAAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGTGA
*
47236427 CAAAATCAGAATCAGAATCAGAATTAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGTGA
* * *
47236458 CAGAATTAGAATCAAAATCAGAAT
1 CAAAATCAGAATCAGAATCAGAAT
47236482 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (31 bp):
CAAAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:47236648 original size:27 final size:26
Alignment explanation
Indices: 47236600--47236682 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 26
47236590 GCGAGGCTGC
* *
47236600 CAGATATTGTGTCGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGA-A
* *
47236627 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGGCGAAGCCACCAGAA
47236653 CAGATATATATATGTGGCGAAGCCACCAGA
1 CAG----ATAT-TGTGGCGAAGCCACCAGA
47236683 TTGTAGCGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.09
27 21 0.47
30 4 0.09
31 16 0.36
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGGCGAAGCCACCAGAA
Found at i:47236926 original size:27 final size:27
Alignment explanation
Indices: 47236893--47237248 Score: 360
Period size: 27 Copynumber: 13.2 Consensus size: 27
47236883 AACACCCTAG
** * *
47236893 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
47236920 GGATAAAAC-GATAATTCTGTAAATCGA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
** *
47236947 GGGTAAAGTAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * *
47236974 GGGTAAAATAATAATTCTATCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
47237001 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
47237028 GGGTAAAACAGTAATTCTGTTAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
47237055 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
47237082 GGGTAAAATAGTAACTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
47237109 TGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
47237136 GGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
47237163 GGGTAAAAC-GAAAATTTTGTAAGT-GAA
1 GGGTAAAACAG-TAATTCTGTAAATCG-A
*
47237190 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
47237217 GGGTAAAATAGTAATTTTG-AAATTCGA
1 GGGTAAAACAGTAATTCTGTAAA-TCGA
47237244 GGGTA
1 GGGTA
47237249 CTTTGATAAT
Statistics
Matches: 275, Mismatches: 47, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.02
27 267 0.97
28 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:47237031 original size:81 final size:81
Alignment explanation
Indices: 47236893--47237248 Score: 401
Period size: 81 Copynumber: 4.4 Consensus size: 81
47236883 AACACCCTAG
* * * **
47236893 GGGTAAAATGGTAATTTTATAAATCGAGGATAAAACGATAATTCTGTAAATCGAGGGTAAAGTAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAG
*
47236958 TAATTTTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * *
47236974 GGGTAAAATAATAATTCTATCAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAG
*
47237039 TAATTCTGTTAATCGA
66 TAATTCTGTAAATCGA
* * * * * * * * *
47237055 GGGTAAAACAATAATTTTGTAAATCGAGGGTAAAA-TAGTAACTCTATAAATCGATGGTAAAATA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAAGGGTAAAACA
*
47237119 GTAATTCTGTAAATTGA
65 GTAATTCTGTAAATCGA
** * * * * * *
47237136 GGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGAAAATTTTGTAAGTGAAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAG
*
47237201 TAATTCTGTAAATCAA
66 TAATTCTGTAAATCGA
*
47237217 GGGTAAAATAGTAATTTTGA-AATTCGAGGGTA
1 GGGTAAAATAGTAATTTT-ATAAATCGAGGGTA
47237249 CTTTGATAAT
Statistics
Matches: 228, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
81 227 1.00
82 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:47237271 original size:54 final size:54
Alignment explanation
Indices: 47237213--47237318 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
47237203 ATTCTGTAAA
*
47237213 TCAAGGGTAAAAT-AGTAATTTTG-AAATTCGAGGGTACTTT-GATAATTTTACATG
1 TCAAGGGT-AAATCAGTAATTTTGCAAACT-GAGGGTA-TTTCGATAATTTTACATG
** *
47237267 TCAAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACA
1 TCAAGGGTAAATCAGTAATTTTGCAAACTGAGGGTATTTCGATAATTTTACA
47237319 AATCAAGGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
53 5 0.11
54 36 0.80
55 4 0.09
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
TCAAGGGTAAATCAGTAATTTTGCAAACTGAGGGTATTTCGATAATTTTACATG
Found at i:47237300 original size:27 final size:27
Alignment explanation
Indices: 47237270--47237394 Score: 121
Period size: 27 Copynumber: 4.7 Consensus size: 27
47237260 TTACATGTCA
* *
47237270 AGGGTATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTACAAACTG
*
47237297 AGGGTATTTCGGTAATTTTACAAA-TCA
1 AGGGTATTTCGGTAATTTTACAAACT-G
* * * *
47237324 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAACTG
*
47237351 GGGGTACTTT-GGTAATTTTAC-AACTG
1 AGGGTA-TTTCGGTAATTTTACAAACTG
* *
47237377 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
47237395 GGTAAATTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
25 3 0.04
26 18 0.22
27 57 0.70
28 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAACTG
Found at i:47237325 original size:54 final size:53
Alignment explanation
Indices: 47237226--47237394 Score: 171
Period size: 54 Copynumber: 3.2 Consensus size: 53
47237216 AGGGTAAAAT
* * **
47237226 AGTAATTTTGAAATTCGAGGGTACTTTGATAATTTTACATGTCAAGGGTATTTC
1 AGTAATTTTGAAACT-GAGGGTACTTTGGTAATTTTACAAATCAAGGGTATTTC
* *
47237280 AGTAATTTTGCAAACTGAGGGTA-TTTCGGTAATTTTACAAATCAAGGATATTTG
1 AGTAATTTTG-AAACTGAGGGTACTTT-GGTAATTTTACAAATCAAGGGTATTTC
* * * * * **
47237334 GGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTC
1 AGTAATTTT-GAAACTGAGGGTACTTTGGTAATTTTACAAATCAAGGGTATTTC
47237387 AGTAATTT
1 AGTAATTT
47237395 GGTAAATTAA
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
53 17 0.18
54 71 0.75
55 7 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
AGTAATTTTGAAACTGAGGGTACTTTGGTAATTTTACAAATCAAGGGTATTTC
Found at i:47239941 original size:37 final size:37
Alignment explanation
Indices: 47239877--47239977 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
47239867 AGCTCAGACG
* * *
47239877 AAATCTCCACACGAAGTTATCGCGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
47239914 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
47239951 TAATCTCCACACGTAGTCATC-GGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
47239978 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 6 0.10
37 54 0.90
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:47240174 original size:47 final size:47
Alignment explanation
Indices: 47240096--47242082 Score: 2946
Period size: 47 Copynumber: 41.4 Consensus size: 47
47240086 CCCTTCGGGA
* * * * * *
47240096 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47240143 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240190 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47240237 CTTATCACATATATACACCTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240284 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240331 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240425 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240472 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240519 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240568 CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47240711 CTTACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47240758 CTTATCACATATATACACTTTCACATTAATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240805 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240852 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240899 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
47240946 CTTATCACA-ATCGGCCATTAGGC-CTTATCACATAT-ATATACAAT-TTCACATTCA-TC
1 CTTATCACATAT-----A-TA--CACTT-TCACAT-TCAT-CAC-ATCGGC-CATT-AGGC
* ** ** *
47241002 AC--ATCGGCCAT-TAGGC-CTTATCACATATATACACTTTCACATTCATCACATCA-GC
1 -CTTATC--ACATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CATTAGGC
* * ** *
47241057 CATTAGGC-C-T-TAT-CACATATATATACACTT--TCACATTCATCACA-TCGGCCATTAGGC
1 C-TTA-TCACATATATACAC-T-T-T-CACA-TTCATCACA-TCGGC-CATTAGG--------C
47241114 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241161 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241208 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47241304 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241351 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47241400 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47241447 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* **
47241541 CTTATCACATATATACAGTTTCACATTCATCACATCGGTGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47241588 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241637 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241731 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241778 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241827 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241874 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241921 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241968 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47242017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47242064 CTTATCACATATATACACT
1 CTTATCACATATATACACT
47242083 GTCTTGGCTG
Statistics
Matches: 1804, Mismatches: 70, Indels: 132
0.90 0.03 0.07
Matches are distributed among these distances:
46 2 0.00
47 1351 0.75
49 346 0.19
51 5 0.00
52 3 0.00
53 5 0.00
54 19 0.01
55 26 0.01
56 27 0.01
57 12 0.01
58 5 0.00
59 3 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47240597 original size:143 final size:141
Alignment explanation
Indices: 47240096--47242082 Score: 3144
Period size: 143 Copynumber: 13.8 Consensus size: 141
47240086 CCCTTCGGGA
* * * * * * * *
47240096 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47240161 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47240226 GGCCATTAGGC
131 GGCCATTAGGC
* *
47240237 CTTATCACATATATACACCTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47240302 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
47240367 GACCATTAGGC
131 GGCCATTAGGC
47240378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47240443 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47240508 GGCCATTAGGC
131 GGCCATTAGGC
* *
47240519 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAAATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47240584 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
47240649 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
47240662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
47240727 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTAATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
47240792 TCGGCTATTAGGC
129 TCGGCCATTAGGC
47240805 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47240870 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
47240935 GGCTATTAGGC
131 GGCCATTAGGC
* ** *
47240946 CTTATCACA-ATCGGCCATTAGGC-CTTATCACATAT-ATATACAAT-TTCACATTCA-TCAC--
1 CTTATCACATAT-----A-TA--CACTT-TCACAT-TCAT-CAC-ATCGGC-CATT-AGGC-CTT
* ** * *
47241004 ATCGGCCAT-TAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTT
51 ATC--ACATATA-TAC--A-C-T-----------TTCACATTCATCACATCGGCCATTAGGCCTT
47241068 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241114 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47241179 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
47241244 TCGGCCATTAGGC
129 TCGGCCATTAGGC
47241257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
47241322 TTTCACATTCATCACATCGACCATTGGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
47241387 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
47241400 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47241465 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47241530 GGCCATTAGGC
131 GGCCATTAGGC
* **
47241541 CTTATCACATATATACAGTTTCACATTCATCACATCGGTGATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
47241606 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
47241671 TCGGCCATTAGGC
129 TCGGCCATTAGGC
47241684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47241749 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
47241814 TCGGCCATTAGGC
129 TCGGCCATTAGGC
47241827 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47241892 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47241957 GGCCATTAGGC
131 GGCCATTAGGC
47241968 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47242033 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
47242083 GTCTTGGCTG
Statistics
Matches: 1735, Mismatches: 60, Indels: 100
0.92 0.03 0.05
Matches are distributed among these distances:
140 2 0.00
141 597 0.34
143 973 0.56
145 1 0.00
146 2 0.00
147 3 0.00
148 9 0.01
149 7 0.00
150 9 0.01
151 6 0.00
153 1 0.00
154 1 0.00
155 2 0.00
156 1 0.00
158 6 0.00
159 9 0.01
160 7 0.00
161 9 0.01
162 3 0.00
163 2 0.00
164 1 0.00
166 35 0.02
168 47 0.03
169 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:47240630 original size:190 final size:188
Alignment explanation
Indices: 47240096--47242082 Score: 3171
Period size: 190 Copynumber: 10.4 Consensus size: 188
47240086 CCCTTCGGGA
* * * * * * * *
47240096 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47240161 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
47240226 GGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGACCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240284 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47240349 TTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47240414 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47240472 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
47240537 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAAATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
47240602 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
47240727 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTAATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
47240792 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47240852 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47240917 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACA-ATCGGCCATTAGGC-CTTATCACATA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-----A-TA--CACTT-TCACAT-
* ** * *
47240980 T-ATATACAAT-TTCACATTCA-TCAC--ATCGGCCAT-TAGGCCTTATCACATATATACACTTT
121 TCAT-CAC-ATCGGC-CATT-AGGC-CTTATC--ACATATA-----TA-CA----------CTTT
*
47241039 CACATTCATCACATCAGCCATTAGGC
163 CACATTCATCACATCGGCCATTAGGC
47241065 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47241130 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
47241195 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
47241322 TTTCACATTCATCACATCGACCATTGGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
47241387 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47241447 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
47241512 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAGTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
** *
47241577 GGTGATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241637 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47241702 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47241767 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47241827 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47241892 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
47241957 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47242017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47242082 T
66 T
47242083 GTCTTGGCTG
Statistics
Matches: 1689, Mismatches: 57, Indels: 104
0.91 0.03 0.06
Matches are distributed among these distances:
187 2 0.00
188 365 0.22
190 981 0.58
192 131 0.08
193 2 0.00
194 3 0.00
195 9 0.01
196 7 0.00
197 8 0.00
198 5 0.00
202 4 0.00
203 4 0.00
205 3 0.00
206 7 0.00
207 9 0.01
208 11 0.01
209 3 0.00
210 2 0.00
211 1 0.00
213 37 0.02
215 93 0.06
216 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47240960 original size:23 final size:23
Alignment explanation
Indices: 47240927--47240977 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
47240917 TTTCACATTC
*
47240927 ATCAC-ATCGGCTATTAGGCCTT
1 ATCACAATCGGCCATTAGGCCTT
47240949 ATCACAATCGGCCATTAGGCCTT
1 ATCACAATCGGCCATTAGGCCTT
47240972 ATCACA
1 ATCACA
47240978 TATATATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (23 bp):
ATCACAATCGGCCATTAGGCCTT
Found at i:47240967 original size:70 final size:71
Alignment explanation
Indices: 47240880--47241026 Score: 253
Period size: 72 Copynumber: 2.1 Consensus size: 71
47240870 CTTCACATTC
* *
47240880 ATCAC-ATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTA
1 ATCACAATCGGCCATTAGGCCTTATCACAATATATACAATTTCACATTCATCACATCGGCCATTA
47240943 GGCCTT
66 GGCCTT
47240949 ATCACAATCGGCCATTAGGCCTTATCACATATATATACAATTTCACATTCATCACATCGGCCATT
1 ATCACAATCGGCCATTAGGCCTTATCACA-ATATATACAATTTCACATTCATCACATCGGCCATT
47241014 AGGCCTT
65 AGGCCTT
47241021 ATCACA
1 ATCACA
47241027 TATATACACT
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
69 5 0.07
70 22 0.30
72 46 0.63
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.31
Consensus pattern (71 bp):
ATCACAATCGGCCATTAGGCCTTATCACAATATATACAATTTCACATTCATCACATCGGCCATTA
GGCCTT
Found at i:47240995 original size:119 final size:117
Alignment explanation
Indices: 47240833--47241073 Score: 421
Period size: 119 Copynumber: 2.1 Consensus size: 117
47240823 TTTCACATTC
*
47240833 ATCAC-ATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAG
1 ATCACAATCGGCCATTAGGCCTTATCACATATATACAACTTCACATTCATCACATCGGCCATTAG
* *
47240897 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
66 GCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTT
*
47240949 ATCACAATCGGCCATTAGGCCTTATCACATATATATACAATTTCACATTCATCACATCGGCCATT
1 ATCACAATCGGCCATTAGGCCTTATCAC--ATATATACAACTTCACATTCATCACATCGGCCATT
47241014 AGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTT
64 AGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTT
47241068 ATCACA
1 ATCACA
47241074 TATATATACA
Statistics
Matches: 118, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
116 5 0.04
117 22 0.19
119 91 0.77
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (117 bp):
ATCACAATCGGCCATTAGGCCTTATCACATATATACAACTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTT
Found at i:47244932 original size:46 final size:46
Alignment explanation
Indices: 47244879--47245050 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
47244869 AACCCGCCCC
* *
47244879 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
47244925 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
47244973 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
47245018 TAAGTGAACTCGGACTTAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
47245051 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:47245012 original size:93 final size:93
Alignment explanation
Indices: 47244884--47245054 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
47244874 GCCCCTAAGT
* * * *
47244884 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
47244949 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
47244977 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
47245042 CGAGTTCGGATGC
66 CGAGTTCGGATGC
47245055 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:47245486 original size:30 final size:29
Alignment explanation
Indices: 47245452--47245510 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
47245442 ATTTAATACG
47245452 AACTTTGGAAAAATTATACTTTTGCCCCTA
1 AACTTTGGAAAAATTA-ACTTTTGCCCCTA
* * * *
47245482 AACTTTTGCATAATTACCTTTTGCCCCTA
1 AACTTTGGAAAAATTAACTTTTGCCCCTA
47245511 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (29 bp):
AACTTTGGAAAAATTAACTTTTGCCCCTA
Found at i:47251317 original size:37 final size:37
Alignment explanation
Indices: 47251264--47251366 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
47251254 CGAATAGTCC
* *
47251264 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT
*
47251301 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT
*
47251338 CCACACGTAGTCATCGAGTCTTACCCAGA
1 CCACACGTAGTCATCGGGTCTTACCCAGA
47251367 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT
Found at i:47251577 original size:60 final size:55
Alignment explanation
Indices: 47251507--47251777 Score: 220
Period size: 48 Copynumber: 5.3 Consensus size: 55
47251497 ATATACACAC
*
47251507 ATCTCCTACATATTTCACACTAGCCGAATCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCC--AT---TAGCCATTCGGCTTTACCACATATACAT
*
47251567 ATCTCATACATATTT----C--G-CATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
* *
47251615 ATCTCATACATATTT--CAC-A--C--TAGCCATTCGGCTTTAGCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
*
47251663 ATCTCATACATAGTT--CAC-A--C--TAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
* * * *
47251711 ATCTAAAACATATTT----C-A--CATTAGCCATTCAGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
47251759 ATCTCATACATATTTCACA
1 ATCTCATACATATTTCACA
47251778 TTTCGGCTTT
Statistics
Matches: 189, Mismatches: 13, Indels: 26
0.83 0.06 0.11
Matches are distributed among these distances:
46 3 0.02
48 165 0.87
50 2 0.01
51 2 0.01
53 1 0.01
54 1 0.01
56 1 0.01
60 14 0.07
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (55 bp):
ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
Found at i:47251593 original size:48 final size:48
Alignment explanation
Indices: 47251539--47252971 Score: 2105
Period size: 48 Copynumber: 30.4 Consensus size: 48
47251529 GCCGAATCAC
*
47251539 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47251587 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
47251635 TAGCCATTCGGCTTTAGCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47251683 TAGCCATTCGGCTTTACCACATATACATATCTAAAACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47251731 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACA-
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47251778 T-----TTCGGCTTTGCCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47251821 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47251869 TAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47251917 TAGCCATTCGGC-TT-----ATAT--ATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
47251957 TAGCCATTCGACTTTACCACCTATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252005 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
47252053 TAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252101 TAGCCATTCGGCTTTACCACATATACATATCTCATACATACTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252149 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252197 TAGCCATTCGGCTTTACCCCATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252245 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACA-
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252292 T-----TTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252335 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252383 TAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252431 TAGCCATTCGGC--T------TATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252471 TAGCCATTCGGCTTTACCAGC-TATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCA-CATATACATATCTCATACATATTTCACAT
* *
47252519 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
47252567 TAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252615 TAGCCATTCGGCTTTACCACATATACATATCTCATACATACTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
47252663 TGGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252711 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47252759 TAGCCATTCGGCTTTACCCCATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* **
47252807 TAGCCATTCCGCTTTACTGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252855 TAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252903 TAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47252951 TAGCCATTCAGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
47252972 CACATATATA
Statistics
Matches: 1285, Mismatches: 71, Indels: 58
0.91 0.05 0.04
Matches are distributed among these distances:
40 72 0.06
41 2 0.00
42 84 0.07
43 2 0.00
46 4 0.00
47 5 0.00
48 1116 0.87
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:47252503 original size:514 final size:514
Alignment explanation
Indices: 47251536--47252964 Score: 2498
Period size: 514 Copynumber: 2.8 Consensus size: 514
47251526 CTAGCCGAAT
* * * * *
47251536 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGCTT
1 CACTAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
* * * * *
47251601 TACCACGTATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAGCACGTATACATATC
66 TACCACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCTCATATACATATC
* * *
47251666 TCATACATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAAAACATATTTCACAT
131 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47251731 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACATTTCGGCTTTGCCGCATA
196 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACATTTCGGCTTTACCGCATA
47251796 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATA
261 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATA
47251861 TTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTC
326 TTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTC
*
47251926 GGCTTATATATATCTCATACATATTTCGCATTAGCCATTCGACTTTACCACCTATACATATCTCA
391 GGCTTATACATATCTCATACATATTTCGCATTAGCCATTCGACTTTACCACCTATACATATCTCA
47251991 TACATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
456 TACATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
47252050 CACTAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
1 CACTAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
47252115 TACCACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCTCATATACATATC
66 TACCACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCTCATATACATATC
* * *
47252180 TCATACATATTTCACATTAGCCATTCGGCTTTACCCCATATACATATCTCATATATATTTCACAT
131 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
47252245 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACATTTCGGCTTTACCGCATA
196 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACATTTCGGCTTTACCGCATA
47252310 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATA
261 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATA
47252375 TTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTC
326 TTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTC
* *
47252440 GGCTTATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCAGCTATACATATCTCA
391 GGCTTATACATATCTCATACATATTTCGCATTAGCCATTCGACTTTACCACCTATACATATCTCA
47252505 TACATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
456 TACATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
47252564 CACTAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
1 CACTAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
*
47252629 TACCACATATACATATCTCATACATACTTCACACTGGCCATTCGGCTTTACCTCATATACATATC
66 TACCACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCTCATATACATATC
*
47252694 TCATACATATTTCACACTAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
131 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
47252759 TAGCCATTCGGCTTTACCCCATATACATATCTCATATATATTTCACATTAGCCATTCCGCTTTAC
196 TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACA-T-----TTCGGCTTTAC
* * *
47252824 TGCATATACATATCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCA
255 CGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCA
* * * *
47252889 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAG
320 TACATATTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCATTAG
*
47252954 CCATTCAGCTT
385 CCATTCGGCTT
47252965 TACCACACAC
Statistics
Matches: 873, Mismatches: 36, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
514 729 0.84
515 1 0.00
520 143 0.16
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.35
Consensus pattern (514 bp):
CACTAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
TACCACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTACCTCATATACATATC
TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
TAGCCATTCAGCTTTACCGCATATACATATCTCATACATATTTCACATTTCGGCTTTACCGCATA
TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATA
TTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTC
GGCTTATACATATCTCATACATATTTCGCATTAGCCATTCGACTTTACCACCTATACATATCTCA
TACATATTTCGCATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
Found at i:47256625 original size:40 final size:40
Alignment explanation
Indices: 47256558--47256754 Score: 281
Period size: 40 Copynumber: 5.0 Consensus size: 40
47256548 CCTCATAATT
*
47256558 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
* *
47256597 CTAGCACGAATGCTCTTCGGGACTTAGCCTGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
47256637 CCAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
47256677 CCAGCACGAATGCTCTTCGGGACTTATCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
47256717 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
47256755 AACTCTCAAT
Statistics
Matches: 142, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.10
40 128 0.90
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:47258084 original size:37 final size:37
Alignment explanation
Indices: 47258031--47258133 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
47258021 CGAATAGTCC
*
47258031 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
47258068 CCACACGTAGTCATCGGATCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
47258105 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
47258134 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:47258360 original size:48 final size:48
Alignment explanation
Indices: 47258306--47258805 Score: 822
Period size: 48 Copynumber: 10.4 Consensus size: 48
47258296 GTCGAATCAC
*
47258306 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
47258354 TAGCCATTCGGCTTTACCACGTAAACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
47258402 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47258450 TAGCCATTCGGCTTTACCACATATACATATCTAATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47258498 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47258546 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
47258594 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47258642 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
47258690 TAGCCATTCGGCTTTACCGCATATACTTATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47258738 TAGCCATTCGGTTTTACCACATATACATATCTCATACA-ATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
47258785 TAGCCATTCAGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
47258806 CACATATATA
Statistics
Matches: 425, Mismatches: 27, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
47 28 0.07
48 397 0.93
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:47262975 original size:20 final size:20
Alignment explanation
Indices: 47262950--47262988 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47262940 TGTATTCTTA
* *
47262950 AAATTTTATAATTTTTCATC
1 AAATTTTACAACTTTTCATC
47262970 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
47262989 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:47265341 original size:31 final size:31
Alignment explanation
Indices: 47265306--47265368 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
47265296 ACTATCTCAA
* *
47265306 ATTCAAATCTTTCTGTTACGTTAAGTATTTC
1 ATTCAAATCTTTCTGTGACGTCAAGTATTTC
47265337 ATTCAAATCTTTCTGTGACGTCAAGTATTTC
1 ATTCAAATCTTTCTGTGACGTCAAGTATTTC
47265368 A
1 A
47265369 GACTTTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.44
Consensus pattern (31 bp):
ATTCAAATCTTTCTGTGACGTCAAGTATTTC
Found at i:47270786 original size:49 final size:49
Alignment explanation
Indices: 47270729--47271051 Score: 511
Period size: 47 Copynumber: 6.8 Consensus size: 49
47270719 GGCCAAGACA
47270729 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
47270778 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
47270827 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
47270874 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
47270923 ATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * *
47270970 ATGTGATGAATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCG
* *
47271017 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
47271052 TCCCGAAGGG
Statistics
Matches: 260, Mismatches: 8, Indels: 13
0.93 0.03 0.05
Matches are distributed among these distances:
46 2 0.01
47 137 0.53
48 3 0.01
49 118 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:47270873 original size:96 final size:96
Alignment explanation
Indices: 47270729--47271051 Score: 526
Period size: 96 Copynumber: 3.4 Consensus size: 96
47270719 GGCCAAGACA
47270729 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
47270794 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATATGTGATAAGGCCTAATGGCCG
47270827 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
47270892 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
*
47270923 ATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
47270988 TG--TATATATGTGA-CAGAGCCGAGTGGCCA
66 TGTATATATATGTGATAAG-GCCTAATGGCCG
* * *
47271017 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
47271052 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
93 2 0.01
94 51 0.24
96 142 0.66
98 20 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:47277056 original size:47 final size:47
Alignment explanation
Indices: 47276978--47277615 Score: 969
Period size: 47 Copynumber: 13.5 Consensus size: 47
47276968 CCCTTCGGGA
* * * * *
47276978 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
47277025 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * * *
47277072 CTCATCACATATATACACTTTCAAATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
47277119 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
47277166 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
47277215 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
47277264 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
47277311 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
47277358 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
47277407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
47277454 CTTATCAC-TATATACACTTTCACATTCATCACATTGG-CATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
47277499 CTTATCACATATATACACTTTCACATTCAT--CATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
47277544 CTTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 C-TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
47277594 CTTATCACATATGTACACTTTC
1 CTTATCACATATATACACTTTC
47277616 TCTTGGCCGA
Statistics
Matches: 551, Mismatches: 29, Indels: 22
0.92 0.05 0.04
Matches are distributed among these distances:
44 6 0.01
45 23 0.04
46 56 0.10
47 284 0.52
48 22 0.04
49 146 0.26
50 14 0.03
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:47277212 original size:96 final size:96
Alignment explanation
Indices: 47276978--47277615 Score: 976
Period size: 96 Copynumber: 6.7 Consensus size: 96
47276968 CCCTTCGGGA
* * * * * *
47276978 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
47277041 ACTTTCACATTCATCACATCGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTCGGC
* * * *
47277072 CTCATCAC--ATATATACACTTTCAAATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
47277135 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTCGGC
*
47277166 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATAT
* *
47277231 ACACTTTCACATTCATCACATTGGCCATTCGAC
64 ACACTTTCACATTCATCACATCGGCCATTCGGC
47277264 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
47277327 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTCGGC
47277358 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
47277423 ACTTTCACATTCATCACATCGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTCGGC
*
47277454 CTTATCAC---TATATACACTTTCACATTCATCACATTGG-CATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
* * *
47277515 ACTTTCACATTCAT--CATTGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTCGGC
* *
47277544 CTTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATGTA
1 C-TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATA
47277609 CACTTTC
65 CACTTTC
47277616 TCTTGGCCGA
Statistics
Matches: 506, Mismatches: 25, Indels: 25
0.91 0.04 0.04
Matches are distributed among these distances:
90 13 0.03
91 7 0.01
92 38 0.08
93 29 0.06
94 162 0.32
95 29 0.06
96 184 0.36
98 44 0.09
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:47277273 original size:22 final size:22
Alignment explanation
Indices: 47277245--47277367 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
47277235 TTTCACATTC
47277245 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
** * *
47277267 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGACCTT
* *
47277291 CATCACATCGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
** * *
47277314 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGACCTT
*
47277338 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
47277361 ATCACAT
1 ATCACAT
47277368 ATATATACAC
Statistics
Matches: 70, Mismatches: 21, Indels: 20
0.63 0.19 0.18
Matches are distributed among these distances:
22 29 0.41
23 9 0.13
24 10 0.14
25 22 0.31
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:47277276 original size:143 final size:140
Alignment explanation
Indices: 47276978--47277615 Score: 924
Period size: 143 Copynumber: 4.5 Consensus size: 140
47276968 CCCTTCGGGA
* * * * * * *
47276978 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
* *
47277043 TTTCACATTCATCACATCGGCCATTCGGCCTCATCACATATATACACTTTCAAATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
47277108 GGCTATTAGGC
130 GGCCATTAGGC
*
47277119 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATAC
*
47277184 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * *
47277249 CATTGGCCATTCGAC
126 CATCGGCCATTAGGC
47277264 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
*
47277329 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
47277394 TCGGCCATTCGGC
128 TCGGCCATTAGGC
47277407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC-TATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
* *
47277471 TTTCACATTCATCACATTGG-CATTCGGCCTTATCACATATATACACTTTCACATTCAT--CATT
65 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
47277533 GGCTATTAGGC
130 GGCCATTAGGC
* *
47277544 CTTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATGTA
1 C-TTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATA
47277609 CACTTTC
62 CACTTTC
47277616 TCTTGGCCGA
Statistics
Matches: 464, Mismatches: 25, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
137 13 0.03
138 7 0.02
139 22 0.05
140 46 0.10
141 75 0.16
142 29 0.06
143 184 0.40
145 88 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (140 bp):
CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:47283961 original size:40 final size:38
Alignment explanation
Indices: 47283917--47284135 Score: 205
Period size: 40 Copynumber: 5.6 Consensus size: 38
47283907 GCTCCTCGTT
*
47283917 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTT-TAGTAACTCGCA
*
47283957 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTTAGTAACTCGCA
* *
47283997 CAAATGCCTTCGG-CTTAGCCC--ATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTTAGTAACTCGCA
* *
47284032 C-AATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGG-TTTAGTAACTCGCA
* * * * * *
47284071 CAAATACCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
47284112 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
47284136 ACATCATTCA
Statistics
Matches: 155, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
34 11 0.07
35 13 0.08
36 7 0.05
38 7 0.05
39 16 0.10
40 88 0.57
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:47284059 original size:74 final size:75
Alignment explanation
Indices: 47283945--47284136 Score: 210
Period size: 74 Copynumber: 2.5 Consensus size: 75
47283935 AGCCCGGTTA
*
47283945 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATACCTTCGG
47284010 CTTAGCCCAT
66 CTTAGCCCAT
* ** *
47284020 TAGTATCTCGCAC-AATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCACAAATACCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATACCTTCG
*
47284083 GATCTTAGTCCGGAT
65 G--CTTAG-CC-CAT
* * * *
47284098 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
47284137 CATCATTCAA
Statistics
Matches: 97, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
73 3 0.03
74 43 0.44
75 12 0.12
76 5 0.05
77 2 0.02
78 2 0.02
79 4 0.04
80 21 0.22
81 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (75 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATACCTTCGG
CTTAGCCCAT
Found at i:47284120 original size:114 final size:116
Alignment explanation
Indices: 47283919--47284133 Score: 262
Period size: 114 Copynumber: 1.9 Consensus size: 116
47283909 TCCTCGTTCA
*
47283919 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
47283984 TTAGTAACTCGCACAAATGCCTTC-GG-CTTAGCCCATTAGTATCTCGCAC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCATTAGTATCTCGCAC
* * * **
47284033 AATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCG
1 AATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCG
* *
47284095 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
63 GATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCC
47284134 GGACATCATT
Statistics
Matches: 85, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
113 6 0.07
114 59 0.69
115 12 0.14
116 8 0.09
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (116 bp):
AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCATTAGTATCTCGCAC
Found at i:47288044 original size:27 final size:27
Alignment explanation
Indices: 47288014--47288079 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
47288004 GGAGGAAGTG
* *
47288014 TACTGTTACTGGTGGCTTTGTCACATA
1 TACTATTACTGGTGGCTTTGCCACATA
*
47288041 TACTATTATTGGTGGCTTTGCCACATA
1 TACTATTACTGGTGGCTTTGCCACATA
* *
47288068 TATTAATACTGG
1 TACTATTACTGG
47288080 CAGCTTTGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
TACTATTACTGGTGGCTTTGCCACATA
Found at i:47288085 original size:27 final size:27
Alignment explanation
Indices: 47288028--47288087 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
47288018 GTTACTGGTG
* * * **
47288028 GCTTTGTCACATATACTATTATTGGTG
1 GCTTTGCCACATATACTAATACTGGCA
*
47288055 GCTTTGCCACATATATTAATACTGGCA
1 GCTTTGCCACATATACTAATACTGGCA
47288082 GCTTTG
1 GCTTTG
47288088 GTGGGTTACT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Consensus pattern (27 bp):
GCTTTGCCACATATACTAATACTGGCA
Found at i:47291291 original size:16 final size:15
Alignment explanation
Indices: 47291270--47291313 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
47291260 TGTAGAATGG
47291270 AAAAAGCTGAAAAGTC
1 AAAAAGCTGAAAAG-C
* *
47291286 AAAAAGCCGACAAGC
1 AAAAAGCTGAAAAGC
47291301 AGAAAAGCTGAAA
1 A-AAAAGCTGAAA
47291314 GAATGGCCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 2 0.09
16 21 0.91
ACGTcount: A:0.57, C:0.16, G:0.20, T:0.07
Consensus pattern (15 bp):
AAAAAGCTGAAAAGC
Found at i:47291920 original size:27 final size:27
Alignment explanation
Indices: 47291881--47291939 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
47291871 GGAGGAAGTG
* *
47291881 TACTGTTATTGGTGGCTTTGTCACATA
1 TACTGTTACTGGTGGCTTTGCCACATA
*
47291908 TACTGTTACTGGTGGCTTTGCCGCATA
1 TACTGTTACTGGTGGCTTTGCCACATA
47291935 TACTG
1 TACTG
47291940 ATATGGCAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.41
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTTGCCACATA
Found at i:47312382 original size:40 final size:41
Alignment explanation
Indices: 47312286--47312390 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 41
47312276 TGAATGATGT
*
47312286 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * * *
47312326 CCTGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
47312366 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47312391 AACGAGTAGC
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.02
40 44 0.83
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:47319038 original size:12 final size:12
Alignment explanation
Indices: 47319021--47319054 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
47319011 ACATGCATGC
*
47319021 ATATATAAGTAT
1 ATATATAAGCAT
47319033 ATATATAAGCAT
1 ATATATAAGCAT
47319045 ATATATAAGC
1 ATATATAAGC
47319055 TTACAACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (12 bp):
ATATATAAGCAT
Found at i:47327591 original size:21 final size:21
Alignment explanation
Indices: 47327567--47327606 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
47327557 AAAACCCTTC
*
47327567 TTAAAATAAAAGAAACCTTAA
1 TTAAAATAAAAAAAACCTTAA
*
47327588 TTAAATTAAAAAAAACCTT
1 TTAAAATAAAAAAAACCTT
47327607 TTAGTTACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.28
Consensus pattern (21 bp):
TTAAAATAAAAAAAACCTTAA
Found at i:47328084 original size:28 final size:28
Alignment explanation
Indices: 47327992--47328085 Score: 75
Period size: 28 Copynumber: 3.2 Consensus size: 28
47327982 CTTACAAATG
*
47327992 CCAGATATATATATATGTGGCGAAGTCA
1 CCAGATATATATATATGTGGCGAAGCCA
* * *
47328020 CCAAATACAGATAT-TGTGGCTAGGACA-CCAAA
1 CCAGATATATATATATGTGGC---GA-AGCC--A
*
47328052 ACAGATATATATATATGTGGCGAAGCCA
1 CCAGATATATATATATGTGGCGAAGCCA
47328080 CCAGAT
1 CCAGAT
47328086 TGCAGCGAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
27 6 0.12
28 17 0.35
29 1 0.02
30 7 0.14
31 1 0.02
32 11 0.22
33 6 0.12
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.23
Consensus pattern (28 bp):
CCAGATATATATATATGTGGCGAAGCCA
Found at i:47328752 original size:26 final size:27
Alignment explanation
Indices: 47328723--47328776 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
47328713 TCACACAATT
47328723 TAGTCATTT-ACACACAAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
* *
47328749 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
47328776 T
1 T
47328777 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACAAGGGGCAAAA
Found at i:47328946 original size:27 final size:27
Alignment explanation
Indices: 47328777--47328948 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
47328767 GGGGCAAAAT
* * ** *
47328777 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47328804 GGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47328831 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
47328858 GGTAATTCTATTCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
47328885 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47328912 GGTAATTCTACCTTACACGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
47328939 GGTAATTCTA
1 GGTAATTCTA
47328949 TAACTTATCA
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:47335152 original size:16 final size:17
Alignment explanation
Indices: 47335117--47335155 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
47335107 ACAAAGAAAG
*
47335117 TTTGGGCTTTCAGGATT
1 TTTGGGCTTTCAGGACT
*
47335134 TTTGGG-TTTCGGGACT
1 TTTGGGCTTTCAGGACT
47335150 TTTGGG
1 TTTGGG
47335156 GCATTACATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.08, C:0.10, G:0.36, T:0.46
Consensus pattern (17 bp):
TTTGGGCTTTCAGGACT
Found at i:47346687 original size:13 final size:13
Alignment explanation
Indices: 47346669--47346694 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47346659 GGTTGGCAAG
47346669 GACACGCCCGTGT
1 GACACGCCCGTGT
47346682 GACACGCCCGTGT
1 GACACGCCCGTGT
47346695 ACGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:47354386 original size:27 final size:26
Alignment explanation
Indices: 47354338--47354397 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
47354328 GCAACGCTGC
*
47354338 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
47354365 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
47354391 TAGATAT
1 CAGATAT
47354398 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47355159 original size:26 final size:27
Alignment explanation
Indices: 47355137--47355219 Score: 132
Period size: 27 Copynumber: 3.1 Consensus size: 27
47355127 TAGGGGTAAA
* *
47355137 TCGGTAGTCCTACCCTAC-AGGGTATT
1 TCGGTATTTCTACCCTACAAGGGTATT
47355163 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGGTATTTCTACCCTACAAGGGTATT
*
47355190 TTGGTATTTCTACCCTACAAGGGTATT
1 TCGGTATTTCTACCCTACAAGGGTATT
47355217 TCG
1 TCG
47355220 ATAATTTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 16 0.31
27 36 0.69
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
TCGGTATTTCTACCCTACAAGGGTATT
Found at i:47362192 original size:27 final size:26
Alignment explanation
Indices: 47362144--47362195 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
47362134 GCGAGGTTGC
*
47362144 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
47362170 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
47362196 TTGCAGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47371944 original size:16 final size:16
Alignment explanation
Indices: 47371902--47371938 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
47371892 GTAGATCGGC
47371902 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGCCG
*
47371918 AAAAGTCGAAATGCTG
1 AAAAGTCGAAATGCCG
47371934 AAAAG
1 AAAAG
47371939 CTGAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:47372224 original size:29 final size:29
Alignment explanation
Indices: 47372156--47372250 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
47372146 GTGAGCATGA
*
47372156 ATAT-AATGTGATTTGGGCCT-ATGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
* * * *
47372183 ACATAAATGTGATTTGGGCGTAAAGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
47372212 ATATAAATATGATTTGGGCCTAATGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
*
47372241 ATGTAAATAT
1 ATATAAATAT
47372251 AGTTAGGTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 3 0.05
28 15 0.26
29 40 0.69
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.31
Consensus pattern (29 bp):
ATATAAATATGATTTGGGCCTAATGGGCC
Done.