Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 149 of 325
Found at i:47375785 original size:14 final size:15
Alignment explanation
Indices: 47375756--47375789 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
47375746 ATGAAATAGC
47375756 TAAAATTAAAAATTA
1 TAAAATTAAAAATTA
*
47375771 TAAAA-TAATAATTA
1 TAAAATTAAAAATTA
47375785 TAAAA
1 TAAAA
47375790 CCTAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAATTAAAAATTA
Found at i:47375818 original size:22 final size:23
Alignment explanation
Indices: 47375793--47375844 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
47375783 TATAAAACCT
47375793 AATAAAAA-TAAG-CTTAAA-GAAA
1 AATAAAAAGT-AGTCTTAAATG-AA
47375815 AATAAAAAGTAGTCTTAAATGAA
1 AATAAAAAGTAGTCTTAAATGAA
47375838 AATAAAA
1 AATAAAA
47375845 GGAACAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 16 0.59
24 1 0.04
ACGTcount: A:0.65, C:0.04, G:0.10, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAATGAA
Found at i:47384697 original size:40 final size:40
Alignment explanation
Indices: 47384660--47384881 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
47384650 GCTACTCGTT
* *
47384660 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
47384700 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
47384740 CGAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
**
47384780 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
47384819 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
47384860 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
47384882 AGACATCATT
Statistics
Matches: 160, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 3 0.02
39 30 0.19
40 111 0.69
41 16 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:47458696 original size:81 final size:79
Alignment explanation
Indices: 47458576--47458728 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 79
47458566 AAATTGTACA
* * * *
47458576 GCACTAAGTTGCGATTCGACTTGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTG
1 GCACTAAGTTGCGAGTCAACTTGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTGTG
47458640 CGAATTGACCATGCG
65 CGAATTGACCATGCG
** *
47458655 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGT-TGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGT-TGCGAGTC-AACT-TGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
47458719 TGCGAGTTGA
63 TGCGAATTGA
47458729 TTGTATAGCA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
79 9 0.15
80 8 0.13
81 33 0.53
82 12 0.19
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (79 bp):
GCACTAAGTTGCGAGTCAACTTGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGTGC
GAATTGACCATGCG
Found at i:47458722 original size:27 final size:27
Alignment explanation
Indices: 47458576--47458730 Score: 120
Period size: 27 Copynumber: 5.8 Consensus size: 27
47458566 AAATTGTACA
* * *
47458576 GCACTAAGT-TGCGATTCGACT-TGTT
1 GCACTAAGTGTGCGATTTGATTATGTG
** *
47458601 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGATTATG-TG
* ** *
47458628 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGATTATGTG
* * * *
47458655 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-TTTGATTATGTG
*
47458683 GCACTAAGT-TGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGATTATGTG
*
47458709 GCACTAAGTGTGCGAGTTGATT
1 GCACTAAGTGTGCGATTTGATT
47458731 GTATAGCACT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
25 9 0.09
26 24 0.23
27 55 0.53
28 16 0.15
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGATTATGTG
Found at i:47458739 original size:27 final size:27
Alignment explanation
Indices: 47458568--47458745 Score: 82
Period size: 27 Copynumber: 6.7 Consensus size: 27
47458558 GCGGGATTAA
*
47458568 ATTGTACAGCACTAAGT-TGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
47458594 ACTTGT-T-GCACTAAGTGTGCGAAATG
1 A-TTGTATAGCACTAAGTGTGCGAATTG
47458620 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
47458647 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
47458675 ACTATGTAGCACTAAGT-TGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
47458701 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
47458728 ATTGTATAGCACTGAGTG
1 ATTGTATAGCACTAAGTG
47458746 CGGGCTCAAT
Statistics
Matches: 118, Mismatches: 24, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
25 9 0.08
26 23 0.19
27 71 0.60
28 15 0.13
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:47460136 original size:23 final size:23
Alignment explanation
Indices: 47460084--47460155 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 23
47460074 GGGGTGTTAC
47460084 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAAT-GGTTAGGT-AATGTT-CATG
47460110 ATAATGGTTAGGTAATGTTCATG
1 ATAATGGTTAGGTAATGTTCATG
47460133 ATAATGG---GGTACATGTTCATG
1 ATAATGGTTAGGTA-ATGTTCATG
47460154 AT
1 AT
47460156 CCATTTTGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.09
21 11 0.24
23 11 0.24
24 6 0.13
25 8 0.18
26 5 0.11
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (23 bp):
ATAATGGTTAGGTAATGTTCATG
Found at i:47461808 original size:27 final size:27
Alignment explanation
Indices: 47461759--47461898 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
47461749 AGGAAGCGTC
*
47461759 CTGGTGGCTATG-CACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
47461785 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
47461812 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
47461839 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
47461866 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
47461893 CTGGTG
1 CTGGTG
47461899 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
26 20 0.20
27 79 0.77
28 3 0.03
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:47461841 original size:54 final size:53
Alignment explanation
Indices: 47461759--47461898 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
47461749 AGGAAGCGTC
47461759 CTGGTGGCTATG-CACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
47461812 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
47461866 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
47461899 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
53 19 0.23
54 63 0.77
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:47461909 original size:27 final size:27
Alignment explanation
Indices: 47461759--47461916 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
47461749 AGGAAGCGTC
*
47461759 CTGGTGGCTATG-CACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
47461785 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
47461812 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
47461839 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
47461866 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
47461893 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
47461917 GCAGCCTCGC
Statistics
Matches: 116, Mismatches: 7, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
26 21 0.18
27 93 0.80
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:47468089 original size:26 final size:26
Alignment explanation
Indices: 47468060--47468167 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
47468050 TGGTACAAAT
*
47468060 TGATAATGGGTTAGGTAGATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
47468086 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
47468112 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
47468138 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
47468164 TGAT
1 TGAT
47468168 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:47469876 original size:54 final size:54
Alignment explanation
Indices: 47469794--47469935 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
47469784 ATGGAGGAAG
* * *
47469794 TGTCCTAGTGGCTATGCTACAATTATCTGATCTGGTAGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTACCACATATATC
* *
47469848 TGTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTACCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTACCACATATATC
* *
47469902 TGTTCTGGTGGCTCTGCCACAA-TATCTGTATCTG
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCTG
47469936 TTGACTTCGT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 6 0.08
54 73 0.92
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTACCACATATATC
Found at i:47469935 original size:27 final size:27
Alignment explanation
Indices: 47469801--47469935 Score: 143
Period size: 27 Copynumber: 5.0 Consensus size: 27
47469791 AAGTGTCCTA
* *
47469801 GTGGCTATGCTACAATTATCTG-ATCTG
1 GTGGCTCTGCCACAA-TATCTGTATCTG
* *
47469828 GTAGCTCTGCCACATATATCTGT-CCTG
1 GTGGCTCTGCCACA-ATATCTGTATCTG
* *
47469855 GTGGCTATGCCACAATTATCTG-ATCTA
1 GTGGCTCTGCCACAA-TATCTGTATCTG
*
47469882 GTGGCTCTACCACATATATCTGT-TCTG
1 GTGGCTCTGCCACA-ATATCTGTATCTG
47469909 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
47469936 TTGACTTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
26 9 0.10
27 78 0.88
28 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:47488982 original size:12 final size:14
Alignment explanation
Indices: 47488951--47488987 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
47488941 AAGCTCGAAA
47488951 ATCACA-ATATAGT
1 ATCACATATATAGT
47488964 ATCACATATATA-T
1 ATCACATATATAGT
47488977 AT-ACATATATA
1 ATCACATATATA
47488988 AATATCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
13 9 0.39
14 5 0.22
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.35
Consensus pattern (14 bp):
ATCACATATATAGT
Found at i:47490967 original size:21 final size:20
Alignment explanation
Indices: 47490938--47490979 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
47490928 GTAACACTTA
47490938 TGATATTTTTTTGGGTAATT
1 TGATATTTTTTTGGGTAATT
47490958 TGATATTTTTTTGGGTAATT
1 TGATATTTTTTTGGGTAATT
47490978 TG
1 TG
47490980 GCTAAGGTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (20 bp):
TGATATTTTTTTGGGTAATT
Found at i:47493246 original size:20 final size:20
Alignment explanation
Indices: 47493193--47493238 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
47493183 CACGGCCTAC
47493193 CCACACGGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
47493213 CCACACGGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
47493233 CCACAC
1 CCACAC
47493239 AGGTGTGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.43, G:0.26, T:0.09
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAG
Found at i:47495212 original size:14 final size:14
Alignment explanation
Indices: 47495193--47495220 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47495183 CTTTCACGTC
47495193 GGTTGAAGAAGATA
1 GGTTGAAGAAGATA
47495207 GGTTGAAGAAGATA
1 GGTTGAAGAAGATA
47495221 ACCCTCCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (14 bp):
GGTTGAAGAAGATA
Found at i:47497935 original size:109 final size:109
Alignment explanation
Indices: 47497743--47497963 Score: 376
Period size: 109 Copynumber: 2.0 Consensus size: 109
47497733 CGGATATAGC
47497743 TCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAATGCCTTCGGACTTAAC
1 TCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAATGCCTTCGGACTTAAC
47497808 CCGGATTTAATGACTCGCACG-GCCTTCGGGACTTAA-CCGGAT
66 CCGGATTTAATGACTCGCACGAGCCTTCGGGACTTAACCCGGAT
47497850 TCCTCGTTCAAATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTT
1 TCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACT--CACAATGCCTTC-GGACTT
47497914 AACCCGGATTTAATGACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
63 AACCCGGATTTAATGACTCGCACG-A-GCCTTCGGGACTTAACCCGGAT
47497963 T
1 T
47497964 TAATATCTCA
Statistics
Matches: 107, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
106 24 0.22
107 19 0.18
108 12 0.11
109 30 0.28
112 15 0.14
113 7 0.07
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (109 bp):
TCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAATGCCTTCGGACTTAAC
CCGGATTTAATGACTCGCACGAGCCTTCGGGACTTAACCCGGAT
Found at i:47497984 original size:78 final size:73
Alignment explanation
Indices: 47497751--47498079 Score: 237
Period size: 78 Copynumber: 4.4 Consensus size: 73
47497741 GCTCCTCGTT
* * * *
47497751 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACT--CACAATGCCTTCGGACTTAACCCGGAT
1 CAAAGGCCTTCGGGACTTAACCCGGATTTA-T-ACTCGCACAATGCCTTCGGACTTAACCCGGAT
*
47497814 TTAATGACTCG
64 TTAAT-ACTCA
* * * * *
47497825 C-ACGGCCTTCGGGACTTAA-CCGGA--T-TCCTCGTTCA-AATGCCTTCGGACATAGCCCGGTT
1 CAAAGGCCTTCGGGACTTAACCCGGATTTATACTCG--CACAATGCCTTCGGACTTAACCCGGAT
*
47497884 TTAGTAACTCA
64 TTAAT-ACTCA
*
47497895 CACAATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CA-AAGGCCTTCGGGACTTAACCCGGATTT-AT-ACTCGCAC-AATGCCTTC-GGACTTAACCCG
47497960 GATTTAATATCTCA
61 GATTTAATA-CTCA
* **
47497974 CAAAGGCCTTCGGGGCTTAACCCGGAACTTGTAT-CTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAAGGCCTTCGGGACTTAACCCGG-A-TT-TATACTCGCAC-AATGCCTTCGGA-CTTAACCCG
* *
47498038 GATATATTCACTTAGCA
61 GATTTAAT-AC-T--CA
*
47498055 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGA
47498080 CAGCATTCAA
Statistics
Matches: 203, Mismatches: 28, Indels: 43
0.74 0.10 0.16
Matches are distributed among these distances:
67 2 0.01
68 1 0.00
70 31 0.15
71 2 0.01
72 20 0.10
73 19 0.09
74 1 0.00
75 1 0.00
76 2 0.01
77 4 0.02
78 65 0.32
79 26 0.13
80 22 0.11
81 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (73 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTATACTCGCACAATGCCTTCGGACTTAACCCGGATTT
AATACTCA
Found at i:47497993 original size:38 final size:38
Alignment explanation
Indices: 47497751--47498026 Score: 205
Period size: 40 Copynumber: 7.3 Consensus size: 38
47497741 GCTCCTCGTT
* * * * *
47497751 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATATCTCA
*
47497789 C-AATGCCTTC-GGACTTAACCCGGATTTAATGA-CTCG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAAT-ATCTCA
** ** *
47497825 C-ACGGCCTTCGGGACTTAA-CCGGA-TT--CCTCGT-T
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATATC-TCA
* * * * *
47497858 CAAATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATATCTCA
*
47497895 CACAATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CA-AATGCCTTCGGGACTTAACCCGGATTTAAT-A-TCTCA
*
47497936 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATATCTCA
* * * *
47497974 CAAAGGCCTTCGGGGCTTAACCCGGAACTTGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-A-TT-TAATATCTCA
47498014 CAAATGCCTTCGG
1 CAAATGCCTTCGG
47498027 ATCTTAGTCC
Statistics
Matches: 188, Mismatches: 33, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
33 8 0.04
34 12 0.06
35 4 0.02
36 33 0.18
37 21 0.11
38 36 0.19
39 18 0.10
40 51 0.27
41 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATATCTCA
Found at i:47498088 original size:41 final size:41
Alignment explanation
Indices: 47498011--47498088 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47498001 CTTGTATCTC
* * *
47498011 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47498052 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47498089 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47505510 original size:39 final size:39
Alignment explanation
Indices: 47505465--47505688 Score: 211
Period size: 40 Copynumber: 5.7 Consensus size: 39
47505455 GCTCCTCGTT
* * * *
47505465 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCA
*
47505505 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTT-ATAACTCGCA
* *
47505544 CGAATGCCTTCGGGACTTAACCCGGATTTATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTATAACTCGCA
* * * * *
47505583 CAAAGGCCTTCGGGGCTTAACCCGGAACTTGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTATAACTCGCA
** * * *
47505623 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-TAAC-TCGCA
*
47505664 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
47505689 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
39 66 0.43
40 77 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTATAACTCGCA
Found at i:47505621 original size:79 final size:78
Alignment explanation
Indices: 47505465--47505688 Score: 204
Period size: 79 Copynumber: 2.8 Consensus size: 78
47505455 GCTCCTCGTT
* * *
47505465 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
47505530 TTTAATGACTCGCA
66 TTTAAT-ACTCGCA
* * * * *
47505544 CGAATGCCTTCGGGACTTAACCCGGATTTA-TATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGG
47505608 AACTTGT-AT-CTCGCA
65 -A-TT-TAATACTCGCA
* ** * * * * * *
47505623 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTAACCCG
47505687 GA
64 GA
47505689 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
78 11 0.09
79 76 0.64
80 24 0.20
81 7 0.06
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:47505632 original size:40 final size:37
Alignment explanation
Indices: 47505428--47505688 Score: 179
Period size: 40 Copynumber: 6.6 Consensus size: 37
47505418 CTAAATCACG
* * **
47505428 AATGCCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA
1 AATGCCTTCGGGACTTAACCCGGATTTA--T-CTCGCACA
* * * *
47505467 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-T--CTCGCACA
*
47505506 AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTT-AT--CTCGCACA
47505546 AATGCCTTCGGGACTTAACCCGGATTTATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGA-TT-TATCTCGCACA
* *
47505585 AAGGCCTTCGGGGCTTAACCCGGAACTTGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-A-TT-TATCTCGCACA
** * *
47505625 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-T--C-TCGCACA
*
47505666 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47505689 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 27, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 79 0.43
40 83 0.46
41 15 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (37 bp):
AATGCCTTCGGGACTTAACCCGGATTTATCTCGCACA
Found at i:47505697 original size:41 final size:41
Alignment explanation
Indices: 47505620--47505697 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47505610 CTTGTATCTC
* * *
47505620 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47505661 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47505698 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47505836 original size:14 final size:13
Alignment explanation
Indices: 47505817--47505846 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
47505807 ACACATAGAG
47505817 CATGATTTAATGCA
1 CATGATTTAAT-CA
47505831 CATGATTTAATCA
1 CATGATTTAATCA
47505844 CAT
1 CAT
47505847 CGTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
CATGATTTAATCA
Found at i:47507305 original size:55 final size:54
Alignment explanation
Indices: 47507186--47507326 Score: 140
Period size: 55 Copynumber: 2.6 Consensus size: 54
47507176 GACATGGCCG
* * * **
47507186 TGGGCGAACCTACCAAAACAACACGGGCGTTCGACACACTCATGCCTCGAAACTG
1 TGGGCGAACCTGCCAAAACAACACGGGCGTGCGACACACCCATGCCTC-AAACCA
* *
47507241 TGGGCGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCATGCC-CATCATCCA
1 TGGGCGAACCTGCCAAAACAACACGGGCGTGCGACACACCCATGCCTCA--AACCA
* * ***
47507296 TGGGTGAACCTGTCAAGTTAACACGGGCGTG
1 TGGGCGAACCTGCCAAAACAACACGGGCGTG
47507327 GACCTATGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 1 0.01
55 70 0.97
ACGTcount: A:0.28, C:0.32, G:0.26, T:0.15
Consensus pattern (54 bp):
TGGGCGAACCTGCCAAAACAACACGGGCGTGCGACACACCCATGCCTCAAACCA
Found at i:47509806 original size:13 final size:13
Alignment explanation
Indices: 47509788--47509812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47509778 TTGCGTCTTA
47509788 TTCTCATGTGATC
1 TTCTCATGTGATC
47509801 TTCTCATGTGAT
1 TTCTCATGTGAT
47509813 GATTAGAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCTCATGTGATC
Found at i:47527346 original size:47 final size:47
Alignment explanation
Indices: 47527283--47527765 Score: 750
Period size: 47 Copynumber: 10.3 Consensus size: 47
47527273 CCCTTCGGGA
* *
47527283 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
47527330 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
47527377 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
47527424 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
47527471 CTTATCTCATATATACACTTTCACATTCGTCAAATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
47527518 CTTATCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47527565 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
47527612 CTTATTACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47527659 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
47527706 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
47527753 CTTATCACATATA
1 CTTATCACATATA
47527766 CATATCTTGT
Statistics
Matches: 396, Mismatches: 40, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 396 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:47527715 original size:22 final size:22
Alignment explanation
Indices: 47527687--47527762 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
47527677 TTTCACATTC
47527687 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
47527709 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
47527733 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
47527756 ATCACAT
1 ATCACAT
47527763 ATACATATCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:47533775 original size:21 final size:22
Alignment explanation
Indices: 47533751--47533802 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
47533741 TCAAATGGAG
* *
47533751 TAAAGAAATCTTGTA-ATGAAA
1 TAAAGAAAACTTGAACATGAAA
*
47533772 TAAAAAAAACTTGAACATGAAA
1 TAAAGAAAACTTGAACATGAAA
47533794 -AAATGAAAA
1 TAAA-GAAAA
47533803 TTATTCTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (22 bp):
TAAAGAAAACTTGAACATGAAA
Found at i:47543975 original size:27 final size:27
Alignment explanation
Indices: 47543945--47544122 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
47543935 ATATTGAGCC
* * *
47543945 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
47543972 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
47543999 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
47544027 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
47544054 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
47544081 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
47544108 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47544123 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:47544038 original size:55 final size:55
Alignment explanation
Indices: 47543945--47544122 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
47543935 ATATTGAGCC
* * *
47543945 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
47543999 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
47544054 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
47544108 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47544123 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:47544084 original size:82 final size:81
Alignment explanation
Indices: 47543966--47544121 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
47543956 TGCTATACAA
* * *
47543966 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
47544031 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
47544048 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
47544112 CACTTAGTGC
65 CACTTAGTGC
47544122 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47551872 original size:27 final size:27
Alignment explanation
Indices: 47551842--47552019 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
47551832 ATATTGAGCC
* * *
47551842 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
47551869 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
47551896 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
47551924 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
47551951 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
47551978 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
47552005 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47552020 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:47551935 original size:55 final size:55
Alignment explanation
Indices: 47551842--47552019 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
47551832 ATATTGAGCC
* * *
47551842 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
47551896 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
47551951 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
47552005 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47552020 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:47551981 original size:82 final size:81
Alignment explanation
Indices: 47551863--47552018 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
47551853 TGCTATACAA
* * *
47551863 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
47551928 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
47551945 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
47552009 CACTTAGTGC
65 CACTTAGTGC
47552019 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47558860 original size:79 final size:81
Alignment explanation
Indices: 47558715--47558877 Score: 287
Period size: 79 Copynumber: 2.0 Consensus size: 81
47558705 TGTCGAAAAT
47558715 CTTTATTTTTGTAAACCCATTCCACAGCCGAGTTGTTGCAACTTAGGTCTGATACCACTAAATGT
1 CTTTATTTTTGTAAACCCATTCCACA-CCGAGTTGTTGCAACTTAGGTCTGATACCACTAAATGT
47558780 AACACCCCTTACCCAGC
65 AACACCCCTTACCCAGC
47558797 CTTTA-TTTTGTAAACCCATTCCACA-C-AGTTGTTGCAACTTAGGCTCTGATACCACTAAATGT
1 CTTTATTTTTGTAAACCCATTCCACACCGAGTTGTTGCAACTTAGG-TCTGATACCACTAAATGT
47558859 AACACCCCTTACCCAGC
65 AACACCCCTTACCCAGC
47558876 CT
1 CT
47558878 AGACGTTATG
Statistics
Matches: 80, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
78 17 0.21
79 38 0.47
81 20 0.25
82 5 0.06
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (81 bp):
CTTTATTTTTGTAAACCCATTCCACACCGAGTTGTTGCAACTTAGGTCTGATACCACTAAATGTA
ACACCCCTTACCCAGC
Found at i:47559525 original size:21 final size:22
Alignment explanation
Indices: 47559499--47559539 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
47559489 ACTCAGTGTG
47559499 TAAAAT-AACCCAACCATAGTC
1 TAAAATCAACCCAACCATAGTC
*
47559520 TAAAATCAACTCAACCATAG
1 TAAAATCAACCCAACCATAG
47559540 AAACAGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.49, C:0.27, G:0.05, T:0.20
Consensus pattern (22 bp):
TAAAATCAACCCAACCATAGTC
Found at i:47559790 original size:27 final size:27
Alignment explanation
Indices: 47559742--47559872 Score: 119
Period size: 27 Copynumber: 4.9 Consensus size: 27
47559732 GCGAGGCTGC
*
47559742 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGACAG-AGCCACCAGATA
*
47559769 CAGATATTGTGATAGAGCCACCAGA-A
1 CAGATATTGTGACAGAGCCACCAGATA
* * *
47559795 CAAATATATGTGGCAGAGCCACCAAAT-
1 CAGATAT-TGTGACAGAGCCACCAGATA
*
47559822 CAGATAATTGTGGCAGAGCCACCAGATA
1 CAGAT-ATTGTGACAGAGCCACCAGATA
* *
47559850 -A-ATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGACAGAGCCACCAG
47559873 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
26 28 0.31
27 59 0.66
28 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGACAGAGCCACCAGATA
Found at i:47559842 original size:54 final size:53
Alignment explanation
Indices: 47559760--47559871 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 53
47559750 GTGACGAAGT
* *
47559760 CACCAGATACAGATATTGTGATAGAGCCACCAGAACAAAT-ATATGTGGCAGAGC
1 CACCAAATACAGATATTGTGACAGAGCCACCAG-ACAAATAAT-TGTGGCAGAGC
* * *
47559814 CACCAAAT-CAGATAATTGTGGCAGAGCCACCAGATAAATAATTGTGGCATAGC
1 CACCAAATACAGAT-ATTGTGACAGAGCCACCAGACAAATAATTGTGGCAGAGC
47559867 CACCA
1 CACCA
47559872 GGACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 25 0.49
54 26 0.51
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (53 bp):
CACCAAATACAGATATTGTGACAGAGCCACCAGACAAATAATTGTGGCAGAGC
Found at i:47561535 original size:26 final size:26
Alignment explanation
Indices: 47561435--47561538 Score: 119
Period size: 25 Copynumber: 4.2 Consensus size: 26
47561425 TGAAATGCCC
*
47561435 ATCAT-GAAC-TTTACCTAAACC--T
1 ATCATGGAACATTTACCTAACCCATT
*
47561457 ATCATGGAAACATTTACCTAACCTATT
1 ATCATGG-AACATTTACCTAACCCATT
* *
47561484 ATCATGGAATATTTA-CTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
47561509 ATCATGGAACATTGACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
47561535 ATCA
1 ATCA
47561539 ATTTGTACCA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
22 5 0.07
23 1 0.01
24 3 0.04
25 31 0.46
26 20 0.29
27 8 0.12
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:47561735 original size:39 final size:39
Alignment explanation
Indices: 47561681--47561760 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
47561671 CAATTTAGCC
47561681 TATAGCATTTTCAAACATTTTCACATAGGTCCTATTTCA
1 TATAGCATTTTCAAACATTTTCACATAGGTCCTATTTCA
47561720 TATAGCATTTTCAAACATTTTCACATAGGTCCTATTTCA
1 TATAGCATTTTCAAACATTTTCACATAGGTCCTATTTCA
47561759 TA
1 TA
47561761 ATTTCACCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (39 bp):
TATAGCATTTTCAAACATTTTCACATAGGTCCTATTTCA
Found at i:47563145 original size:25 final size:25
Alignment explanation
Indices: 47563086--47563148 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
47563076 GACCCACAAC
* * *
47563086 TTGTGTGAGCATACCAATTTATAGC
1 TTGTGTGAGCATACCAATCTACAGA
* * *
47563111 TCGTGAGAGCATACCGATCTACAGA
1 TTGTGTGAGCATACCAATCTACAGA
47563136 TTGTGTGAGCATA
1 TTGTGTGAGCATA
47563149 TATACCGATT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (25 bp):
TTGTGTGAGCATACCAATCTACAGA
Found at i:47563175 original size:29 final size:29
Alignment explanation
Indices: 47563121--47563177 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
47563111 TCGTGAGAGC
*
47563121 ATACCGATCTACAGATTGTGTGAGCATAT
1 ATACCGATCTACAGATCGTGTGAGCATAT
* *
47563150 ATACCGATTTACAGCTCGTGAT-AGCATA
1 ATACCGATCTACAGATCGTG-TGAGCATA
47563178 CCGATCTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (29 bp):
ATACCGATCTACAGATCGTGTGAGCATAT
Found at i:47563178 original size:25 final size:25
Alignment explanation
Indices: 47563093--47563192 Score: 76
Period size: 25 Copynumber: 3.8 Consensus size: 25
47563083 AACTTGTGTG
* * * *
47563093 AGCATACCAATTTATAGCTCGTGAG
1 AGCATACCGATCTACAGCTCGTGAT
* *
47563118 AGCATACCGATCTACAGATTGTG-T
1 AGCATACCGATCTACAGCTCGTGAT
*
47563142 GAGCATATATACCGATTTACAGCTCGTGAT
1 -AGC----ATACCGATCTACAGCTCGTGAT
*
47563172 AGCATACCGATCTATAGCTCG
1 AGCATACCGATCTACAGCTCG
47563193 AGTAAGCATA
Statistics
Matches: 58, Mismatches: 11, Indels: 12
0.72 0.14 0.15
Matches are distributed among these distances:
25 37 0.64
29 20 0.34
30 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCATACCGATCTACAGCTCGTGAT
Found at i:47563200 original size:25 final size:25
Alignment explanation
Indices: 47563150--47563203 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
47563140 GTGAGCATAT
* *
47563150 ATACCGATTTACAGCTCGTGATAGC
1 ATACCGATCTACAGCTCGAGATAGC
*
47563175 ATACCGATCTATAGCTCGAG-TAAGC
1 ATACCGATCTACAGCTCGAGAT-AGC
47563200 ATAC
1 ATAC
47563204 AGGTTCACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (25 bp):
ATACCGATCTACAGCTCGAGATAGC
Found at i:47563201 original size:54 final size:54
Alignment explanation
Indices: 47563096--47563202 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
47563086 TTGTGTGAGC
* * * *
47563096 ATACCAATTTATAGCTCGTGAGAGCATACCGATCTACAGATTGTGTGAGCATAT
1 ATACCAATTTACAGCTCGTGAGAGCATACCGATCTACAGATCGAGTAAGCATAT
* * * *
47563150 ATACCGATTTACAGCTCGTGATAGCATACCGATCTATAGCTCGAGTAAGCATA
1 ATACCAATTTACAGCTCGTGAGAGCATACCGATCTACAGATCGAGTAAGCATA
47563203 CAGGTTCACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (54 bp):
ATACCAATTTACAGCTCGTGAGAGCATACCGATCTACAGATCGAGTAAGCATAT
Found at i:47564356 original size:20 final size:20
Alignment explanation
Indices: 47564323--47564361 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
47564313 ACCATATGAT
47564323 TTGGCTTGTGTTATAGTATC
1 TTGGCTTGTGTTATAGTATC
*
47564343 TTGG-TTGTGATTATGGTAT
1 TTGGCTTGTG-TTATAGTAT
47564362 TTTGAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.15, C:0.05, G:0.28, T:0.51
Consensus pattern (20 bp):
TTGGCTTGTGTTATAGTATC
Found at i:47565548 original size:18 final size:18
Alignment explanation
Indices: 47565509--47565550 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
47565499 ACTGATCCCA
47565509 TACAAAATTTTTCGAAGC
1 TACAAAATTTTTCGAAGC
* * *
47565527 TACACAATTTTTCTAAGT
1 TACAAAATTTTTCGAAGC
47565545 TACAAA
1 TACAAA
47565551 GGTCATACAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (18 bp):
TACAAAATTTTTCGAAGC
Found at i:47566886 original size:43 final size:42
Alignment explanation
Indices: 47566853--47566934 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
47566843 TTATATGTAA
* *
47566853 TCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACACGAAG
1 TCAAATAT-AATGCCAATGTCCCAAACAGGGTCTTACACGAAG
* *
47566896 TCAAATATGATGCCAATGTCCCAAACATGGTCTTACACG
1 TCAAATATAATGCCAATGTCCCAAACAGGGTCTTACACG
47566935 TAAATCTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 27 0.77
43 8 0.23
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
TCAAATATAATGCCAATGTCCCAAACAGGGTCTTACACGAAG
Found at i:47566961 original size:44 final size:43
Alignment explanation
Indices: 47566820--47566986 Score: 146
Period size: 44 Copynumber: 3.9 Consensus size: 43
47566810 AACTCGTAAA
** * * * *
47566820 ATGCCAACGTCCCAGATGTGGTCTTATATGTAATC-AAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCG
* * *
47566863 ATGCC-ACTGTCCCAGACAGGGTCTTACACG-AA-GTCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCTCAAAT-CG
* *
47566905 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCTCAAATCG
*
47566949 ATGCCAACGTCCCAGACTTGGTCTTACACGATAA-CTCA
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCTCA
47566987 TATTGGAATC
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 31 0.31
43 27 0.27
44 32 0.32
45 7 0.07
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCTCAAATCG
Found at i:47583813 original size:42 final size:42
Alignment explanation
Indices: 47583749--47583831 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
47583739 TGGCTATGTA
*
47583749 TGATGATGGTTCGATAAGAGCTGATTTGAAAGCAAGATCGTC
1 TGATGATGGTTCGATAAGAGCTGAATTGAAAGCAAGATCGTC
*
47583791 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGT
1 TGATGATGGTTCGATAAGAGCTGAATTGAAAGCAAGATCGT
47583832 TATTTATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (42 bp):
TGATGATGGTTCGATAAGAGCTGAATTGAAAGCAAGATCGTC
Found at i:47590132 original size:30 final size:30
Alignment explanation
Indices: 47590087--47590145 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
47590077 GCCTTCCCTT
*
47590087 CCCATTATTGATGCTTAAAGGGAAGGATAA
1 CCCATGATTGATGCTTAAAGGGAAGGATAA
*
47590117 CCCATGATTGGTGCTTAAAGGGAAGGATA
1 CCCATGATTGATGCTTAAAGGGAAGGATA
47590146 GCGACTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (30 bp):
CCCATGATTGATGCTTAAAGGGAAGGATAA
Found at i:47592182 original size:39 final size:39
Alignment explanation
Indices: 47592124--47592246 Score: 147
Period size: 39 Copynumber: 3.2 Consensus size: 39
47592114 TATCATATCC
* **
47592124 AGAATACGGAGGTATATTTTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
* * ** **
47592163 AGAATAGGGAGATGGATTTTGCTTAAAACTGCCAGATTG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
**
47592202 AGAATACGGAGATGGATCCTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
47592241 AGAATA
1 AGAATA
47592247 AGACTTCGGG
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (39 bp):
AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
Found at i:47600776 original size:18 final size:18
Alignment explanation
Indices: 47600753--47600840 Score: 158
Period size: 18 Copynumber: 4.9 Consensus size: 18
47600743 CATTGAAATG
*
47600753 TTTCAATGAAAACCTTGT
1 TTTCATTGAAAACCTTGT
*
47600771 TTTCAATGAAAACCTTGT
1 TTTCATTGAAAACCTTGT
47600789 TTTCATTGAAAACCTTGT
1 TTTCATTGAAAACCTTGT
47600807 TTTCATTGAAAACCTTGT
1 TTTCATTGAAAACCTTGT
47600825 TTTCATTGAAAACCTT
1 TTTCATTGAAAACCTT
47600841 TCCTTGAAAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (18 bp):
TTTCATTGAAAACCTTGT
Found at i:47602549 original size:14 final size:15
Alignment explanation
Indices: 47602530--47602562 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
47602520 ATATTTAACT
47602530 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
47602544 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
47602559 TGTT
1 TGTT
47602563 GATATTCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.18, C:0.09, G:0.15, T:0.58
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:47605919 original size:14 final size:15
Alignment explanation
Indices: 47605900--47605929 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47605890 GTTTATTATA
47605900 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
47605914 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
47605929 T
1 T
47605930 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:47606168 original size:31 final size:31
Alignment explanation
Indices: 47606114--47606174 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
47606104 ATTATATGCA
* *
47606114 TTTTATATATAAGAAATATAATTATTAAAAG
1 TTTTATATATAAGAAATAGAATTAATAAAAG
*
47606145 TTTTATA-ATATGAAATAAGAATTAATAAAA
1 TTTTATATATAAGAAAT-AGAATTAATAAAA
47606175 CAAAAAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (31 bp):
TTTTATATATAAGAAATAGAATTAATAAAAG
Found at i:47608762 original size:38 final size:37
Alignment explanation
Indices: 47608717--47608835 Score: 125
Period size: 38 Copynumber: 3.1 Consensus size: 37
47608707 TTTAAGTTCA
*
47608717 GATATAATACTAGCATTAGGCCCGCGGGACTTTAA-CCG
1 GATATAATAC-AGCATTA-GCCTGCGGGACTTTAACCCG
**
47608755 GATATAATACAGCACGAAGCCTGCGGGA-TTTAACCCG
1 GATATAATACAGCA-TTAGCCTGCGGGACTTTAACCCG
* *
47608792 GATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAA-TACAGCAT-TAGCCTGCGGGACTTTAA-CCCG
47608832 GATA
1 GATA
47608836 CACATCAAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
36 5 0.07
37 23 0.34
38 27 0.40
39 5 0.07
40 8 0.12
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (37 bp):
GATATAATACAGCATTAGCCTGCGGGACTTTAACCCG
Found at i:47611311 original size:43 final size:43
Alignment explanation
Indices: 47611240--47611452 Score: 209
Period size: 43 Copynumber: 5.0 Consensus size: 43
47611230 GCTGGTGAAT
* * * *
47611240 AATATTATAGGGCTTCGGGCC-AGCAGGCTATAATACCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
*
47611282 GATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * * * ** *
47611325 AATGATATCGGGCTTCAAGTCTAGCAAGCT-TCGTGCAGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * *
47611367 GATAATATCAGGCTTCGAGCCTAGCTA-GTTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGA
* * * * *
47611410 AATGATATCAGGCTTCAAGCCTAGCAGGCGA-AATGTCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
47611452 A
1 A
47611453 TGAGTTCAGA
Statistics
Matches: 139, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
42 60 0.43
43 79 0.57
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:47611369 original size:85 final size:85
Alignment explanation
Indices: 47611277--47611435 Score: 266
Period size: 85 Copynumber: 1.9 Consensus size: 85
47611267 CTATAATACC
* *
47611277 GGTGAGATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGAAATGATATCGGGCTTC
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTA-GCTATAATGCCGGTGAAATGATATCAGGCTTC
*
47611341 AAGTCTAGCAAGCTTCGTGCA
65 AAGCCTAGCAAGCTTCGTGCA
*
47611362 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGTTATAATGCCGGTGAAATGATATCAGGCTTCA
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
47611427 AGCCTAGCA
66 AGCCTAGCA
47611436 GGCGAAATGT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
85 68 0.99
86 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (85 bp):
GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
AGCCTAGCAAGCTTCGTGCA
Found at i:47611475 original size:41 final size:42
Alignment explanation
Indices: 47611299--47611479 Score: 107
Period size: 43 Copynumber: 4.3 Consensus size: 42
47611289 TCGGGCTTCG
* * * *
47611299 AGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCA
1 AGCCTAGCAGGCGA-AATGCCGGTGAAATGATATCAGACTTAA
* * **** * * * * **
47611342 AGTCTAGCAAGCTTCGTGCAGGTGAGATAATATCAGGCTTCG
1 AGCCTAGCAGGCGAAATGCCGGTGAAATGATATCAGACTTAA
** * *
47611384 AGCCTAGCTA-GTTATAATGCCGGTGAAATGATATCAGGCTTCA
1 AGCCTAGC-AGGCGA-AATGCCGGTGAAATGATATCAGACTTAA
*
47611427 AGCCTAGCAGGCGAAATGTCGGTG-AATGAGT-TCAGACTTAA
1 AGCCTAGCAGGCGAAATGCCGGTGAAATGA-TATCAGACTTAA
*
47611468 AGTCTAGCAGGC
1 AGCCTAGCAGGC
47611480 TTCGTGCCGG
Statistics
Matches: 109, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
41 24 0.22
42 41 0.38
43 44 0.40
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (42 bp):
AGCCTAGCAGGCGAAATGCCGGTGAAATGATATCAGACTTAA
Found at i:47619219 original size:40 final size:40
Alignment explanation
Indices: 47618989--47619212 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
47618979 TGAATGATGT
* * * *
47618989 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
47619029 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
47619069 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
47619107 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
47619148 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
47619188 CCGAGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47619213 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 35 0.21
40 118 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:47619234 original size:119 final size:119
Alignment explanation
Indices: 47618988--47619245 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
47618978 TTGAATGATG
* * *
47618988 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** * **
47619053 GTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* * * *
47619107 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* *
47619170 TTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAA
* *
47619227 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47619246 TACGTGATTC
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:47628073 original size:22 final size:24
Alignment explanation
Indices: 47628023--47628074 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
47628013 ATGTTGTTCC
47628023 TTTTA-TTTTCATTTAAGACTACT
1 TTTTATTTTTCATTTAAGACTACT
47628046 TTTTATTTTTC-TTTAAG-CTTA-T
1 TTTTATTTTTCATTTAAGAC-TACT
47628068 TTTTATT
1 TTTTATT
47628075 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.33
23 13 0.48
24 5 0.19
ACGTcount: A:0.21, C:0.10, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTATTTTTCATTTAAGACTACT
Found at i:47628097 original size:14 final size:14
Alignment explanation
Indices: 47628078--47628110 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
47628068 TTTTATTAGG
47628078 TTTTATAATTATT-A
1 TTTTATAATT-TTAA
47628092 TTTTATAATTTTAA
1 TTTTATAATTTTAA
47628106 TTTTA
1 TTTTA
47628111 GCTATTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTATAATTTTAA
Found at i:47631118 original size:74 final size:75
Alignment explanation
Indices: 47630994--47631139 Score: 215
Period size: 74 Copynumber: 2.0 Consensus size: 75
47630984 GAAAACCAAG
* * *
47630994 ATTATTCCTTTATTAATAGAGAAGGAAACTGGAAAATTAGAAAAACAAATTAT-TTTTTTCCAAA
1 ATTATTCCCTTATTAATAGAAAAGGAAACTGGAAAATTAGAAAAACAAATTATATTCTTTCCAAA
47631058 AGAATATACA
66 AGAATATACA
* * *
47631068 ATTATTCCCTTATTGATAGAAAAGGCAAA-TGGAAAGTTAGAAAAATAAATTATATTCTTTCCAA
1 ATTATTCCCTTATTAATAGAAAAGG-AAACTGGAAAATTAGAAAAACAAATTATATTCTTTCCAA
47631132 AAGAATAT
65 AAGAATAT
47631140 TAATTTTATA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
74 44 0.69
75 20 0.31
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.32
Consensus pattern (75 bp):
ATTATTCCCTTATTAATAGAAAAGGAAACTGGAAAATTAGAAAAACAAATTATATTCTTTCCAAA
AGAATATACA
Found at i:47631313 original size:138 final size:137
Alignment explanation
Indices: 47631143--47631661 Score: 695
Period size: 137 Copynumber: 3.8 Consensus size: 137
47631133 AGAATATTAA
* * *
47631143 TTTTATATTTTGACTAAAATTAATTAATATAACTGTTTATATTAATAAATTCAGTGAAATATATA
1 TTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATA
* * * **
47631208 CAATTAATATCTTGTATGAGTCAAATTCATATATTAATTATATTTTTTCCAGAAGAATGTTAATT
66 CAATTAATAT-TTGTATGAATCAAATTCATATATTAATTATATTATTTCCAAAAGAAAATTAATT
47631273 TCCATGTC
130 TCCATGTC
* * *
47631281 TTTTATATTTTGACCAAAATTAATTCATATAACTTTTTATATTAATAAATTCGATAAAATATATA
1 TTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATA
* * * *
47631346 CAA-TAATAATTTGTATGGATCAAATTCATATATTAATTATATCATTTCCAAAAGAACATTAACT
66 CAATTAAT-ATTTGTATGAATCAAATTCATATATTAATTATATTATTTCCAAAAGAAAATTAATT
*
47631410 TCAATGTC
130 TCCATGTC
* * * *
47631418 GTTTATA-TTTGACCGAAATTAATTAATATAATTGTTTATATTAATAAAATCGGTAAAATATATA
1 TTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATA
* *
47631482 CAAGTAATATTTTGTATGAATCAAATTCATATATTAATTATATTATTTCCAAAATAAAATTAATT
66 CAATTAATA-TTTGTATGAATCAAATTCATATATTAATTATATTATTTCCAAAAGAAAATTAATT
47631547 TCCATGT-
130 TCCATGTC
* * * * * * *
47631554 TTTATATATTTTTATCGAAATTAATAAATATAATTATTTATATTAA-AAATTCGGTAAAATAAAT
1 TTT-TATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATAT
*
47631618 AGAATTAATATTTAGTATGAATCAAATTCATATATTAATTATAT
65 ACAATTAATATTT-GTATGAATCAAATTCATATATTAATTATAT
47631662 CTATATTCTC
Statistics
Matches: 338, Mismatches: 37, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
136 60 0.18
137 181 0.54
138 97 0.29
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (137 bp):
TTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATA
CAATTAATATTTGTATGAATCAAATTCATATATTAATTATATTATTTCCAAAAGAAAATTAATTT
CCATGTC
Found at i:47634803 original size:40 final size:40
Alignment explanation
Indices: 47634732--47634903 Score: 303
Period size: 40 Copynumber: 4.3 Consensus size: 40
47634722 CTACTCGTTT
* *
47634732 CAAATGCCTTCGGGACATAGCCC-G-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
47634771 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
47634811 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
47634851 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
47634891 CAAATGCCTTCGG
1 CAAATGCCTTCGG
47634904 ATCTTAGTCT
Statistics
Matches: 129, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
39 21 0.16
40 106 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47634940 original size:80 final size:80
Alignment explanation
Indices: 47634732--47634956 Score: 294
Period size: 80 Copynumber: 2.8 Consensus size: 80
47634722 CTACTCGTTT
* * * *
47634732 CAAATGCCTTCGGGACATAGCCC-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGG
47634796 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* *
47634811 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGG
47634876 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
** * * * * *
47634891 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCACAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCC
47634954 GGA
64 GGA
47634957 CATCATTCAA
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 24 0.18
80 98 0.75
81 8 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:47634940 original size:120 final size:119
Alignment explanation
Indices: 47634732--47634956 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 119
47634722 CTACTCGTTT
*
47634732 CAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* * *
47634797 TTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 TATAGTAACTAGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
* ** *
47634851 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTTCGGGACATAACCC-G-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
47634914 GGATATGGTCACTTAGCACAAA-GCCTTCAGGACTTAGCCCGGA
63 GGATATAGTAAC-TAGCACAAATGCCTTCAGGACTTAACCCGGA
47634957 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 24 0.26
120 57 0.63
121 10 0.11
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAACCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47638341 original size:78 final size:81
Alignment explanation
Indices: 47638198--47638381 Score: 252
Period size: 78 Copynumber: 2.3 Consensus size: 81
47638188 GCTACTCGTT
* *
47638198 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
47638263 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
**
47638278 CAAATGCCTTCGGGACTTA-CCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
47638340 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
47638357 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47638382 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
77 3 0.03
78 52 0.56
79 20 0.22
80 18 0.19
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:47638381 original size:40 final size:40
Alignment explanation
Indices: 47638179--47638381 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
47638169 CGGAATTTAA
** *
47638179 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47638219 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47638259 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTA-C
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47638298 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47638337 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47638377 CCGGA
1 CCGGA
47638382 CATCATTCAA
Statistics
Matches: 145, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
37 3 0.02
38 27 0.19
39 14 0.10
40 90 0.62
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47642783 original size:31 final size:31
Alignment explanation
Indices: 47642745--47642807 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
47642735 CCCTTTTCAA
47642745 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
47642776 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
47642807 T
1 T
47642808 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:47643061 original size:23 final size:24
Alignment explanation
Indices: 47642998--47643138 Score: 186
Period size: 22 Copynumber: 6.0 Consensus size: 24
47642988 GCTTTATCAT
*
47642998 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
47643023 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47643046 A-AACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47643068 ATAACTGGGG-ATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
47643090 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
47643115 ATAACTGGGGCATAAGCCATTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47643139 CACTTCCTCC
Statistics
Matches: 106, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
22 37 0.35
23 29 0.27
24 10 0.09
25 30 0.28
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47643069 original size:45 final size:47
Alignment explanation
Indices: 47643019--47643138 Score: 185
Period size: 45 Copynumber: 2.6 Consensus size: 47
47643009 CCTAGCCTCT
47643019 TTTAATAACTGGGGCA-AAGCCCTTTTAA-AACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
47643064 TTTAATAACTGGGG-ATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
47643109 TTTATCATAACTGGGGCATAAGCCATTTTA
1 TTTA--ATAACTGGGGCATAAGCCCTTTTA
47643139 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 1, Indels: 8
0.88 0.01 0.10
Matches are distributed among these distances:
44 6 0.09
45 41 0.60
47 10 0.15
48 7 0.10
49 4 0.06
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:47643213 original size:20 final size:20
Alignment explanation
Indices: 47643188--47643226 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
47643178 TATGAATACA
47643188 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
47643208 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
47643227 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:47643232 original size:20 final size:20
Alignment explanation
Indices: 47643189--47643233 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
47643179 ATGAATACAT
**
47643189 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
47643209 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
47643229 CATGT
1 CATGT
47643234 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:47646048 original size:24 final size:24
Alignment explanation
Indices: 47646016--47646063 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
47646006 AGATTTCGTG
47646016 ACTCTATCCACAATCACCCAAACC
1 ACTCTATCCACAATCACCCAAACC
47646040 ACTCTATCCACAATCACCCAAACC
1 ACTCTATCCACAATCACCCAAACC
47646064 GAATCCTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.17
Consensus pattern (24 bp):
ACTCTATCCACAATCACCCAAACC
Found at i:47650047 original size:13 final size:13
Alignment explanation
Indices: 47650029--47650060 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
47650019 AACATCTTTG
*
47650029 AAAATAATTTTCA
1 AAAATAATTTCCA
47650042 AAAATAATTTCCA
1 AAAATAATTTCCA
47650055 AAAATA
1 AAAATA
47650061 CCCTTCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATAATTTCCA
Found at i:47651144 original size:24 final size:24
Alignment explanation
Indices: 47651080--47651243 Score: 188
Period size: 24 Copynumber: 6.8 Consensus size: 24
47651070 GCTTTATCAT
*
47651080 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
47651105 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
47651128 ACAATTGGGACATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* **
47651152 ACAACTATGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
47651176 ATAACTGGGGCGTAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
47651201 ATAACTGGGGCATAAGCCCTTTATT
1 ATAACTGGGGCATAAGCCCTTT-TA
47651226 ATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCC
47651244 TTGTTACACT
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
23 15 0.12
24 56 0.46
25 50 0.41
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47651323 original size:20 final size:20
Alignment explanation
Indices: 47651298--47651364 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
47651288 TTATGAATAC
47651298 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47651318 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47651338 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47651358 ACCATGT
1 ATCATGT
47651365 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47651329 original size:11 final size:11
Alignment explanation
Indices: 47651298--47651353 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
47651288 TTATGAATAC
47651298 ATCATGTGCAT
1 ATCATGTGCAT
*
47651309 ATCA--TACAT
1 ATCATGTGCAT
47651318 ATCATGTGCAT
1 ATCATGTGCAT
*
47651329 ATCA--TACAT
1 ATCATGTGCAT
*
47651338 GTCATGTGCAT
1 ATCATGTGCAT
47651349 ATCAT
1 ATCAT
47651354 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:47657298 original size:40 final size:40
Alignment explanation
Indices: 47657252--47657415 Score: 267
Period size: 40 Copynumber: 4.1 Consensus size: 40
47657242 CAGGATTGAA
* * * *
47657252 CCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
47657292 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
47657332 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47657372 CCGGATATAGTAACTCGCACAAATGCCTACGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
47657412 CCGG
1 CCGG
47657416 TTATCATCCA
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.01
40 117 0.99
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47658115 original size:22 final size:21
Alignment explanation
Indices: 47658090--47658132 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
47658080 ACCACATATA
* *
47658090 AATGGCATACATTTTACTAACT
1 AATGCCATACATATTA-TAACT
*
47658112 AATGCCTTACATATTATAACT
1 AATGCCATACATATTATAACT
47658133 CAATACGCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (21 bp):
AATGCCATACATATTATAACT
Found at i:47659469 original size:144 final size:144
Alignment explanation
Indices: 47659204--47659491 Score: 531
Period size: 144 Copynumber: 2.0 Consensus size: 144
47659194 AATTCACATG
47659204 CAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATA
1 CAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATA
**
47659269 AAATATTCAAATAATTTGGTGACTCAGTTTAGCGGTCCCGAAACCGCTTTTTGACTAGGGTCACT
66 AAATATTCAAATAATTTGGTGACTCAGTTTAGCGGTCCCGAAACCGCTTTCCGACTAGGGTCACT
47659334 TTAGGGCTGTCACA
131 TTAGGGCTGTCACA
47659348 CAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATA
1 CAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATA
** *
47659413 TCATATTCAAATAATTTGGTGACTCGGTTTAGCGGTCCCGAAACCGCTTTCCGACTAGGGTCACT
66 AAATATTCAAATAATTTGGTGACTCAGTTTAGCGGTCCCGAAACCGCTTTCCGACTAGGGTCACT
47659478 TTAGGGCTGTCACA
131 TTAGGGCTGTCACA
47659492 TAAAAAACTT
Statistics
Matches: 139, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 139 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (144 bp):
CAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATA
AAATATTCAAATAATTTGGTGACTCAGTTTAGCGGTCCCGAAACCGCTTTCCGACTAGGGTCACT
TTAGGGCTGTCACA
Found at i:47662869 original size:15 final size:16
Alignment explanation
Indices: 47662839--47662871 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
47662829 GTAATTTGGT
*
47662839 AATTAAACATAAAATA
1 AATTAAACACAAAATA
47662855 AATTAAAC-CAAAATA
1 AATTAAACACAAAATA
47662870 AA
1 AA
47662872 AGTTATCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (16 bp):
AATTAAACACAAAATA
Found at i:47678148 original size:21 final size:21
Alignment explanation
Indices: 47678122--47678165 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
47678112 TGTAAGGTAA
47678122 AACTCCTAATTGTTTTTGTAC
1 AACTCCTAATTGTTTTTGTAC
47678143 AACTCCTAATTGTTTTTGTAC
1 AACTCCTAATTGTTTTTGTAC
47678164 AA
1 AA
47678166 TTTATAGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.45
Consensus pattern (21 bp):
AACTCCTAATTGTTTTTGTAC
Found at i:47682249 original size:29 final size:27
Alignment explanation
Indices: 47682211--47682275 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 27
47682201 AAAAGAGCCC
*
47682211 AAAATGAATAGTGTGTAAAAAAGAAATTT
1 AAAATAAATAGTGT-TAAAAAA-AAATTT
* * *
47682240 AAAATAAATATTGTTCAAAAATAATTT
1 AAAATAAATAGTGTTAAAAAAAAATTT
47682267 -AAATAAATA
1 AAAATAAATA
47682276 TATATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.28
27 5 0.16
28 6 0.19
29 12 0.38
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATAAATAGTGTTAAAAAAAAATTT
Found at i:47684639 original size:133 final size:132
Alignment explanation
Indices: 47684378--47684881 Score: 724
Period size: 133 Copynumber: 3.8 Consensus size: 132
47684368 AGATTTGCTA
* * *
47684378 TGCTCCACTGCAACATCAGAGAGATAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGG
1 TGCTCCACTGCAACTTCAG-GAAACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGG
* * **
47684443 GAGATAGGATGGTGGCTTAAATCTACTTCACTGCATCTTCTA-GAAGACTAGATTCACCATCTTC
65 GAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTC-AGGAAGACTAGATTTGCCATCTTC
47684507 GATC
129 GATC
* *
47684511 TGTTCCACTGCAACTTCAAGGAAACAAGATCTACCATCTTCAGCCTACTCCACTACAACTTTAGG
1 TGCTCCACTGCAACTTC-AGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGG
* * * * * *
47684576 GAGCTAGGATGGTGGCTTAAATCTGTTTTACTGCAACTTCAGGAA-AATAATATTTGCCGTCTTC
65 GAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACT-AGATTTGCCATCTTC
47684640 GATC
129 GATC
*
47684644 TGCTCCACTGCAACTTCAGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGG
1 TGCTCCACTGCAACTTCAGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGG
* * *
47684709 AGCTAGGATGGTGGCTTAAATCTGCTTCATTGCATCTTCAGGAAGACTAGATTTGCCATCTTCGA
66 AGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACTAGATTTGCCATCTTCGA
47684774 TC
131 TC
* * *
47684776 TGCTCCACTGGAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACTACAACTTTAAG
1 TGCTCCACTGCAACTTC-AGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGG
* * *
47684841 GAGATAGGATGGTGGTTTAAATCTGTTTTACTGCAACTTCA
65 GAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
47684882 TAGAGACAAG
Statistics
Matches: 331, Mismatches: 35, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
132 122 0.37
133 207 0.63
134 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (132 bp):
TGCTCCACTGCAACTTCAGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGG
AGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACTAGATTTGCCATCTTCGA
TC
Found at i:47684793 original size:265 final size:266
Alignment explanation
Indices: 47684304--47684881 Score: 847
Period size: 265 Copynumber: 2.2 Consensus size: 266
47684294 CCACTACAAC
* * * * * * *
47684304 CCACTACAA-TATATGGAGATAAGATGGTGGCTTAAATCTGCTTCATTGCAACTTCAGGAAAACA
1 CCACTACAACTTTAAGGAGATAGGATGGTGGCTTAAATCTGTTTTACTGCAACTTCAGGAAAATA
* * *
47684368 AGATTT---G-C-T--A--TGCTCCACTGCAACATCAGAGAGATAAGATCTACAATCTTCAGCCT
66 ATATTTGCCGTCTTCGATCTGCTCCACTGCAACATCAGAGAAACAAGATCTACAATCTTCAGCCT
*
47684424 ACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTACTTCACTGCATCTTCTAGAAG
131 ACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTACTTCACTGCATCTTCTAGAAG
* *
47684489 ACTAGATTCACCATCTTCGATCTGTTCCACTGCAACTTCAAGGAAACAAGATCTACCATCTTCAG
196 ACTAGATTCACCATCTTCGATCTGCTCCACTGCAACTTCAAGGAAACAAGATCTACAATCTTCAG
*
47684554 CCTACT
261 CCTAAT
* *
47684560 CCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGTTTTACTGCAACTTCAGGAAAATA
1 CCACTACAACTTTAAGGAGATAGGATGGTGGCTTAAATCTGTTTTACTGCAACTTCAGGAAAATA
*
47684625 ATATTTGCCGTCTTCGATCTGCTCCACTGCAACTTCAG-GAAACAAGATCTACAATCTTCAGCCT
66 ATATTTGCCGTCTTCGATCTGCTCCACTGCAACATCAGAGAAACAAGATCTACAATCTTCAGCCT
* * *
47684689 ACTCCACTACAAATTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCATTGCATCTTC-AGGAA
131 ACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTACTTCACTGCATCTTCTA-GAA
** *
47684753 GACTAGATTTGCCATCTTCGATCTGCTCCACTGGAACTTCAAGGAAACAAGATCTACAATCTTCA
195 GACTAGATTCACCATCTTCGATCTGCTCCACTGCAACTTCAAGGAAACAAGATCTACAATCTTCA
47684818 GCCTAAT
260 GCCTAAT
*
47684825 CCACTACAACTTTAAGGAGATAGGATGGTGGTTTAAATCTGTTTTACTGCAACTTCA
1 CCACTACAACTTTAAGGAGATAGGATGGTGGCTTAAATCTGTTTTACTGCAACTTCA
47684882 TAGAGACAAG
Statistics
Matches: 286, Mismatches: 25, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
256 9 0.03
257 52 0.18
260 1 0.00
261 1 0.00
262 1 0.00
264 2 0.01
265 202 0.71
266 18 0.06
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (266 bp):
CCACTACAACTTTAAGGAGATAGGATGGTGGCTTAAATCTGTTTTACTGCAACTTCAGGAAAATA
ATATTTGCCGTCTTCGATCTGCTCCACTGCAACATCAGAGAAACAAGATCTACAATCTTCAGCCT
ACTCCACTACAAATTTAGGGAGATAGGATGGTGGCTTAAATCTACTTCACTGCATCTTCTAGAAG
ACTAGATTCACCATCTTCGATCTGCTCCACTGCAACTTCAAGGAAACAAGATCTACAATCTTCAG
CCTAAT
Found at i:47684924 original size:88 final size:88
Alignment explanation
Indices: 47684773--47684973 Score: 262
Period size: 88 Copynumber: 2.3 Consensus size: 88
47684763 GCCATCTTCG
* * * *
47684773 ATCTGCTCCACTGGAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACTACAACTTT
1 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACCAAAACTTT
* *
47684838 AAGGAGATAGGATGGTGGTTTAA
66 AAGGAGATAGGATGGCGGGTTAA
* * * *
47684861 ATCTGTTTTACTGCAACTTCATA-GAGACAAGATCTACAATCTTCAGCCTACTCCACCAAAACTT
1 ATCTGCTTCACTGCAACTTCA-AGGAAACAAGATCTACAATCTTCAGCCTAATCCACCAAAACTT
* *
47684925 TAGGGAGCTAGGATGGCGGGTTAA
65 TAAGGAGATAGGATGGCGGGTTAA
*
47684949 ATCTGCTTCACTGCATCTTC-AGGAA
1 ATCTGCTTCACTGCAACTTCAAGGAA
47684974 GACTAGATTC
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
86 1 0.01
87 2 0.02
88 91 0.96
89 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (88 bp):
ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACCAAAACTTT
AAGGAGATAGGATGGCGGGTTAA
Found at i:47684931 original size:221 final size:220
Alignment explanation
Indices: 47684650--47685089 Score: 711
Period size: 221 Copynumber: 2.0 Consensus size: 220
47684640 GATCTGCTCC
* *
47684650 ACTGCAACTTCAGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGCTAG
1 ACTGCAACTTCAAGAAACAAGATCTACAATCTTCAGCCTACTCCACCACAAATTTAGGGAGCTAG
* * *
47684715 GATGGTGGCTTAAATCTGCTTCATTGCATCTTCAGGAAGACTAGATTTGCCATCTTCGATCTGCT
66 GATGGCGGCTTAAATCTGCTTCACTGCATCTTCAGGAAGACTAGATTCGCCATCTTCGATCTGCT
**
47684780 CCACTGGAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACTACAACTTTAAGGAGA
131 CCACTACAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACTACAACTTTAAGGAGA
*
47684845 TAGGATGGTGGTTTAAATCTGTTTT
196 TAGGATGGTGGCTTAAATCTGTTTT
*
47684870 ACTGCAACTTCATAGAGACAAGATCTACAATCTTCAGCCTACTCCACCA-AAACTTTAGGGAGCT
1 ACTGCAACTTCA-AGAAACAAGATCTACAATCTTCAGCCTACTCCACCACAAA-TTTAGGGAGCT
*
47684934 AGGATGGCGGGTTAAATCTGCTTCACTGCATCTTCAGGAAGACTAGATTCGCCATCTTCGATCTG
64 AGGATGGCGGCTTAAATCTGCTTCACTGCATCTTCAGGAAGACTAGATTCGCCATCTTCGATCTG
* * * *
47684999 CTCCACTACAACTTCATGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
129 CTCCACTACAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACTACAACTTTAAGGA
* *
47685064 GCTAGGATGGTGGCTTAAATTTGTTT
194 GATAGGATGGTGGCTTAAATCTGTTT
47685090 CACTACATCT
Statistics
Matches: 202, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
220 15 0.07
221 187 0.93
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (220 bp):
ACTGCAACTTCAAGAAACAAGATCTACAATCTTCAGCCTACTCCACCACAAATTTAGGGAGCTAG
GATGGCGGCTTAAATCTGCTTCACTGCATCTTCAGGAAGACTAGATTCGCCATCTTCGATCTGCT
CCACTACAACTTCAAGGAAACAAGATCTACAATCTTCAGCCTAATCCACTACAACTTTAAGGAGA
TAGGATGGTGGCTTAAATCTGTTTT
Found at i:47685014 original size:45 final size:44
Alignment explanation
Indices: 47684949--47685145 Score: 105
Period size: 45 Copynumber: 4.4 Consensus size: 44
47684939 GGCGGGTTAA
* * * *
47684949 ATCTGCTTCACTGCATCTTCAGGAAGACTAGATTCGCCATCTTCG
1 ATCTGCTCCACTACAACTTCAGGAAGACTAGA-TCACCATCTTCG
* *
47684994 ATCTGCTCCACTACAACTTCATGG-AGACAAGATCTACAATCTTC-
1 ATCTGCTCCACTACAACTTCA-GGAAGACTAGATC-ACCATCTTCG
* * * * ***** **
47685038 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGAT-GGTGGCTTAA
1 A-TCTGCTCCACTACAACTTCAGGAAGACTA-GATCACCATCTTCG
* * * * *
47685082 ATTTGTTTCACTACATCTTCAGGAAGACTAGATTCACCGTCTTCG
1 ATCTGCTCCACTACAACTTCAGGAAGACTAGA-TCACCATCTTCG
*
47685127 ATCTGCTCCACTGCAACTT
1 ATCTGCTCCACTACAACTT
47685146 GAAAGAAACA
Statistics
Matches: 108, Mismatches: 35, Indels: 18
0.67 0.22 0.11
Matches are distributed among these distances:
43 22 0.20
44 12 0.11
45 72 0.67
46 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTACAACTTCAGGAAGACTAGATCACCATCTTCG
Found at i:47685030 original size:133 final size:133
Alignment explanation
Indices: 47684874--47685161 Score: 450
Period size: 133 Copynumber: 2.2 Consensus size: 133
47684864 TGTTTTACTG
47684874 CAACTTCATAGAGACAAGATCTACAATCTTCAGCCTACTCCACCAAAACTTTAGGGAGCTAGGAT
1 CAACTTCATAGAGACAAGATCTACAATCTTCAGCCTACTCCACCAAAACTTTAGGGAGCTAGGAT
* * *
47684939 GGCGGGTTAAATCTGCTTCACTGCATCTTCAGGAAGACTAGATTCGCCATCTTCGATCTGCTCCA
66 GGCGGCTTAAATCTGCTTCACTACATCTTCAGGAAGACTAGATTCACCATCTTCGATCTGCTCCA
47685004 CTA
131 CTA
* * *
47685007 CAACTTCATGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGAT
1 CAACTTCATAGAGACAAGATCTACAATCTTCAGCCTACTCCACCAAAACTTTAGGGAGCTAGGAT
* * * *
47685072 GGTGGCTTAAATTTGTTTCACTACATCTTCAGGAAGACTAGATTCACCGTCTTCGATCTGCTCCA
66 GGCGGCTTAAATCTGCTTCACTACATCTTCAGGAAGACTAGATTCACCATCTTCGATCTGCTCCA
*
47685137 CTG
131 CTA
* * *
47685140 CAACTTGAAAGAAACAAGATCT
1 CAACTTCATAGAGACAAGATCT
47685162 GTAGAATTAG
Statistics
Matches: 140, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 140 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
CAACTTCATAGAGACAAGATCTACAATCTTCAGCCTACTCCACCAAAACTTTAGGGAGCTAGGAT
GGCGGCTTAAATCTGCTTCACTACATCTTCAGGAAGACTAGATTCACCATCTTCGATCTGCTCCA
CTA
Found at i:47690722 original size:30 final size:30
Alignment explanation
Indices: 47690688--47690749 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
47690678 CCCGTAAGTT
47690688 AGGACACGATACCATGAACTCCCGAACACA
1 AGGACACGATACCATGAACTCCCGAACACA
*
47690718 AGGACATGATACCATGAACTCCCGAACACA
1 AGGACACGATACCATGAACTCCCGAACACA
47690748 AG
1 AG
47690750 TTTTAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.31, G:0.18, T:0.11
Consensus pattern (30 bp):
AGGACACGATACCATGAACTCCCGAACACA
Found at i:47691548 original size:19 final size:18
Alignment explanation
Indices: 47691508--47691544 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
47691498 AAAAGGGGAC
47691508 ATAAAACAATTTAAAATA
1 ATAAAACAATTTAAAATA
* *
47691526 ATAAAACATTTTTAAATA
1 ATAAAACAATTTAAAATA
47691544 A
1 A
47691545 ATAATACACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAAACAATTTAAAATA
Found at i:47691782 original size:29 final size:27
Alignment explanation
Indices: 47691744--47691808 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 27
47691734 AAAAGAGCTC
*
47691744 AAAATGAATAGTGTGTAAAAAAGAAATTT
1 AAAATAAATAGTGT-TAAAAAA-AAATTT
* * *
47691773 AAAATAAATATTGTTCAAAAATAATTT
1 AAAATAAATAGTGTTAAAAAAAAATTT
47691800 -AAATAAATA
1 AAAATAAATA
47691809 AATATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.28
27 5 0.16
28 6 0.19
29 12 0.38
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATAAATAGTGTTAAAAAAAAATTT
Found at i:47692200 original size:3 final size:3
Alignment explanation
Indices: 47692192--47692251 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
47692182 AAATAAATGC
* * *
47692192 AAT AAT AAT AAT AAT AAT AAT -GT AGAT AAAT ACAT AAA AAT GAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT -AAT A-AT AAT AAT AAT AAT
47692238 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
47692252 CAAACTAAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 3 0.07
3 36 0.78
4 6 0.13
5 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:47693103 original size:18 final size:17
Alignment explanation
Indices: 47693068--47693104 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
47693058 AGGAAAATAA
*
47693068 AAAAATAAAGAGACGAG
1 AAAAATAAAGAAACGAG
47693085 AAAAATAAAGAAACAGAG
1 AAAAATAAAGAAAC-GAG
47693103 AA
1 AA
47693105 TGAAACTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.70, C:0.05, G:0.19, T:0.05
Consensus pattern (17 bp):
AAAAATAAAGAAACGAG
Found at i:47699291 original size:13 final size:13
Alignment explanation
Indices: 47699273--47699309 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
47699263 GTCCTGCTTC
47699273 CACACGGCCGTAT
1 CACACGGCCGTAT
47699286 CACACGGCCGTAT
1 CACACGGCCGTAT
47699299 CACACGGCCGT
1 CACACGGCCGT
47699310 GTCTCTTCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.22, C:0.41, G:0.24, T:0.14
Consensus pattern (13 bp):
CACACGGCCGTAT
Found at i:47702212 original size:9 final size:9
Alignment explanation
Indices: 47702190--47702229 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
47702180 AGGAAAAAGT
47702190 AAATTAAT-
1 AAATTAATA
47702198 -AATTAATA
1 AAATTAATA
47702206 AAATTAATA
1 AAATTAATA
47702215 AAATTAAATA
1 AAATT-AATA
47702225 AAATT
1 AAATT
47702230 GCAAGAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.24
9 13 0.45
10 9 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
AAATTAATA
Found at i:47702226 original size:19 final size:16
Alignment explanation
Indices: 47702190--47702229 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 16
47702180 AGGAAAAAGT
47702190 AAATTAATAATTAATA
1 AAATTAATAATTAATA
47702206 AAATTAATAAAATTAAATA
1 AAATTAAT--AATT-AATA
47702225 AAATT
1 AAATT
47702230 GCAAGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATTAATAATTAATA
Found at i:47708251 original size:53 final size:53
Alignment explanation
Indices: 47708059--47708263 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 53
47708049 TAGGGTTTAT
* * * * * *
47708059 GGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGAAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGAAA
* * * * * * * *
47708113 GGAAATCATGTAAGACCATGTCAAGATATGGCATTGATAAACTACTATATGGAAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGAAA
* * * * * *
47708168 AGATCCCATGTAAGACCATGGCAAGGCATGGCAATGGTGAGTTCATAAGGCAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGAAA
*
47708221 GGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
47708264 TAAAAAGGAA
Statistics
Matches: 117, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 44 0.38
54 35 0.30
55 38 0.32
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGAAA
Found at i:47715452 original size:40 final size:40
Alignment explanation
Indices: 47715415--47715560 Score: 197
Period size: 40 Copynumber: 3.6 Consensus size: 40
47715405 GCTACTCGTT
47715415 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
47715455 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
47715495 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
47715536 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
47715561 CATCATTCAA
Statistics
Matches: 96, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.03
40 82 0.85
41 11 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47722952 original size:17 final size:19
Alignment explanation
Indices: 47722915--47722954 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
47722905 ATTATTTATC
47722915 TATTATATATCTCATATTA
1 TATTATATATCTCATATTA
*
47722934 TATTATATTTCT-ATA-TA
1 TATTATATATCTCATATTA
47722951 TATT
1 TATT
47722955 TCTCTTCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 3 0.15
19 11 0.55
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTATATATCTCATATTA
Found at i:47723025 original size:14 final size:14
Alignment explanation
Indices: 47723002--47723038 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
47722992 TTTTGGTGTT
47723002 GTTT-TATATATTA
1 GTTTATATATATTA
47723015 -TATTATATATATTA
1 GT-TTATATATATTA
47723029 GTTTATATAT
1 GTTTATATAT
47723039 CTTCTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.05
13 2 0.10
14 17 0.81
15 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
GTTTATATATATTA
Found at i:47723264 original size:33 final size:31
Alignment explanation
Indices: 47723216--47723310 Score: 92
Period size: 33 Copynumber: 3.0 Consensus size: 31
47723206 ATATATTCTC
47723216 TTTTATATATCTA-TAT-T-TATTATT-ATCTT
1 TTTTATATAT-TATTATATATATTATTAAT-TT
47723245 ATATTTATATATTATTATATATATATATTAATTT
1 -T-TTTATATATTATTATATATAT-TATTAATTT
47723279 TTTTATATAATTATTATATATATT-TTACATTT
1 TTTTATAT-ATTATTATATATATTATTA-ATTT
47723311 AGTGATTTTC
Statistics
Matches: 57, Mismatches: 0, Indels: 14
0.80 0.00 0.20
Matches are distributed among these distances:
30 3 0.05
31 15 0.26
32 13 0.23
33 18 0.32
34 6 0.11
35 2 0.04
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (31 bp):
TTTTATATATTATTATATATATTATTAATTT
Found at i:47723285 original size:16 final size:16
Alignment explanation
Indices: 47723171--47723297 Score: 78
Period size: 16 Copynumber: 7.4 Consensus size: 16
47723161 TTTCTGGTTA
47723171 ATTATATTTATATATT
1 ATTATATTTATATATT
* * *
47723187 ATAATATCATATATTTT
1 ATTATAT-TTATATATT
* * *
47723204 CTATATATTCTCTTTTATAT
1 AT-TATATT-T-ATATAT-T
47723224 ATCTATATTTAT-TATT
1 AT-TATATTTATATATT
47723240 ATCTTATATTTATATATT
1 A--TTATATTTATATATT
*
47723258 ATTATATATATATATT
1 ATTATATTTATATATT
*
47723274 AATT-TTTTTATATAATT
1 -ATTATATTTATAT-ATT
47723291 ATTATAT
1 ATTATAT
47723298 ATATTTTACA
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
16 32 0.38
17 28 0.33
18 12 0.14
19 4 0.05
20 8 0.10
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATATTTATATATT
Found at i:47723297 original size:41 final size:42
Alignment explanation
Indices: 47723218--47723302 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 42
47723208 ATATTCTCTT
* *
47723218 TTATATATCTATATTTATTATTATCTTATATTTATATAT-TA
1 TTATATATATATATTAATTATTATCTTATATTTATATATATA
47723259 TTATATATATATATTAATT-TT-T-TTATATAATTATTATATATA
1 TTATATATATATATTAATTATTATCTTATAT--TTA-TATATATA
47723301 TT
1 TT
47723303 TTACATTTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
38 6 0.16
39 1 0.03
40 5 0.13
41 22 0.58
42 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (42 bp):
TTATATATATATATTAATTATTATCTTATATTTATATATATA
Found at i:47723513 original size:12 final size:12
Alignment explanation
Indices: 47723496--47723546 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
47723486 TATATTCCTT
47723496 TTATATTATATA
1 TTATATTATATA
47723508 TTATATTATAT-
1 TTATATTATATA
*
47723519 TTATTTTCATATA
1 TTATATT-ATATA
47723532 -TATTATTAT-TA
1 TTA-TATTATATA
47723543 TTAT
1 TTAT
47723547 TTTTTGCTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
11 9 0.27
12 21 0.64
13 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATATTATATA
Found at i:47723530 original size:24 final size:22
Alignment explanation
Indices: 47723479--47723549 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 22
47723469 ATCCTATATA
* *
47723479 ATATATATATATTCCTTTTATATT
1 ATATATAT-TATT-ATTTTATTTT
47723503 ATATAT-TATATTATATTTATTTT
1 ATATATAT-TATTAT-TTTATTTT
47723526 CATATATATTATTATTATTATTTT
1 -ATATATATTATTATT-TTATTTT
47723550 TTGCTCTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 1 0.02
23 14 0.34
24 25 0.61
25 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
ATATATATTATTATTTTATTTT
Found at i:47723530 original size:29 final size:27
Alignment explanation
Indices: 47723473--47723546 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 27
47723463 CTTTATATCC
* *
47723473 TATATAATATATATATATTCCTTTTATA
1 TATATATTATAT-TATATTCATTTTATA
*
47723501 TTATATATTATATTATATTTATTTTCATA
1 -TATATATTATATTATATTCATTTT-ATA
47723530 TATATTATTATTATTAT
1 TATA-TATTA-TATTAT
47723547 TTTTTGCTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 14 0.36
29 19 0.49
30 6 0.15
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.59
Consensus pattern (27 bp):
TATATATTATATTATATTCATTTTATA
Found at i:47723561 original size:30 final size:26
Alignment explanation
Indices: 47723502--47723570 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 26
47723492 CCTTTTATAT
47723502 TATATATTATATTATATTTATTTTCA
1 TATATATTATATTATATTTATTTTCA
47723528 TATATATTATTATTATTATTT-TTTGCTCTA
1 TATATATTA-TATTA-TATTTATTT--TC-A
47723558 TATATATATATAT
1 TATATAT-TATAT
47723571 ATGTCATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
26 9 0.24
27 8 0.22
28 5 0.14
29 2 0.05
30 11 0.30
31 2 0.05
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (26 bp):
TATATATTATATTATATTTATTTTCA
Found at i:47723613 original size:9 final size:9
Alignment explanation
Indices: 47723599--47723658 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
47723589 TATCTTCTAT
47723599 TATATTATA
1 TATATTATA
*
47723608 TATATTAGTCC
1 TATATTA-T-A
* *
47723619 TATATCATT
1 TATATTATA
*
47723628 TATA-TCTA
1 TATATTATA
47723636 TATA-TATA
1 TATATTATA
47723644 TATATTATA
1 TATATTATA
47723653 TATATT
1 TATATT
47723659 GTAATTTATT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
8 12 0.29
9 21 0.51
10 2 0.05
11 6 0.15
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (9 bp):
TATATTATA
Found at i:47723720 original size:13 final size:13
Alignment explanation
Indices: 47723704--47723779 Score: 59
Period size: 13 Copynumber: 5.7 Consensus size: 13
47723694 AGTCCCGTTC
47723704 TATATTATATATCTA
1 TATATTATATA--TA
* *
47723719 TATATTCTATTTA
1 TATATTATATATA
*
47723732 TATATAATATATA
1 TATATTATATATA
47723745 T-TATTATATATA
1 TATATTATATATA
47723757 TGTATATT-TATA-A
1 --TATATTATATATA
47723770 TATCATTATA
1 TAT-ATTATA
47723780 GAGTCTAGGG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
11 3 0.06
12 13 0.26
13 16 0.32
14 5 0.10
15 13 0.26
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (13 bp):
TATATTATATATA
Found at i:47723722 original size:2 final size:2
Alignment explanation
Indices: 47723704--47723772 Score: 51
Period size: 2 Copynumber: 37.5 Consensus size: 2
47723694 AGTCCCGTTC
* * *
47723704 TA TA T- TA TA TA TC TA TA TA T- TC TA TT TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
47723743 TA T- TA T- TA TA TA TA TG TA TA TT TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47723773 CATTATAGAG
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
1 6 0.12
2 46 0.88
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (2 bp):
TA
Found at i:47723724 original size:15 final size:15
Alignment explanation
Indices: 47723704--47723773 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
47723694 AGTCCCGTTC
47723704 TATATTATATATCTA
1 TATATTATATATCTA
* * *
47723719 TATATTCTATTTATA
1 TATATTATATATCTA
*
47723734 TATAATATATAT-TA
1 TATATTATATATCTA
*
47723748 T-TA-TATATATGTA
1 TATATTATATATCTA
47723761 TAT-TTATAATATC
1 TATATTAT-ATATC
47723774 ATTATAGAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
12 7 0.16
13 5 0.11
14 7 0.16
15 25 0.57
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (15 bp):
TATATTATATATCTA
Found at i:47723861 original size:23 final size:23
Alignment explanation
Indices: 47723835--47724026 Score: 64
Period size: 23 Copynumber: 8.2 Consensus size: 23
47723825 TATTATATTC
47723835 TATATATCTTATATATTATTATA
1 TATATATCTTATATATTATTATA
* * * *
47723858 TATATATTATTATATATATCCTTTTT
1 TATATA-TCTTATATAT-T-ATTATA
*
47723884 TAT-TCTCTCTA-ATA-TATCTATA
1 TATATATCT-TATATATTAT-TATA
*
47723906 TTATACTATCTATATCTATATTATTTATC
1 -TATA-TATCT-TA--TATATTA-TTATA
* *
47723935 TATATATC-TATATCTTATATATT
1 TATATATCTTATATATTAT-TATA
**
47723958 TATATAT-TTATATGCTA-TATA
1 TATATATCTTATATATTATTATA
*
47723979 T-TA-ATCTATATATATGT-TT-TC
1 TATATATCT-TATATAT-TATTATA
* *
47724000 TATATAT-ATATATAATATTATA
1 TATATATCTTATATATTATTATA
47724022 TATAT
1 TATAT
47724027 TTTTATTATC
Statistics
Matches: 123, Mismatches: 23, Indels: 47
0.64 0.12 0.24
Matches are distributed among these distances:
19 2 0.02
20 4 0.03
21 20 0.16
22 14 0.11
23 34 0.28
24 14 0.11
25 12 0.10
26 6 0.05
27 4 0.03
28 7 0.06
29 5 0.04
30 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.55
Consensus pattern (23 bp):
TATATATCTTATATATTATTATA
Done.