Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 150 of 325
Found at i:47723873 original size:26 final size:26
Alignment explanation
Indices: 47723815--47724327 Score: 87
Period size: 25 Copynumber: 19.9 Consensus size: 26
47723805 AATCTATGTC
* *
47723815 TTATATATGTTATTATATTCTATATA
1 TTATATATATTATTATATTATATATA
47723841 TCT-TATATATTATTATA-TATATATTA
1 T-TATATATATTATTATATTATATA-TA
* * * * *
47723867 TTATATATATCCTTTTTTATTCTCTCTA
1 TTATATATAT--TATTATATTATATATA
* * * *
47723895 ATATATCTA-TATTATACTATCTATA
1 TTATATATATTATTATATTATATATA
* *
47723920 TCTATAT-TATTTATCTATATATCTATATC
1 T-TATATATA-TTAT-TATAT-TATATATA
*
47723949 TTATATAT-TTA-TATATT-TATATG
1 TTATATATATTATTATATTATATATA
* * * *
47723972 CTATATAT-TAATCTATA-TATATGTTT
1 TTATATATATTAT-TATATTATAT-ATA
*
47723998 TCTATATATATATATAATATTATATATA
1 T-TATATATAT-TATTATATTATATATA
* * *
47724026 TT-T-T-TATTATCTGTGTT-TATAACCTC
1 TTATATATATTAT-TATATTATAT-A--TA
* * *
47724052 TTCCTCTAT-TTA-TAT-TTTTATATA
1 TT-ATATATATTATTATATTATATATA
* **
47724076 TT-TATTTTGTATTTATATT-TATATA
1 TTATATATATTA-TTATATTATATATA
* *
47724101 TTAT-TATTTCTATTAT-TT-T-TTTA
1 TTATATATAT-TATTATATTATATATA
* * *
47724124 TTATTTTTTATT-TTATCTTATATATA
1 TTA-TATATATTATTATATTATATATA
*
47724150 TCT-TCT-TA-TATTAT-TT-TATATA
1 T-TATATATATTATTATATTATATATA
* * *
47724172 TTATATATA-TATCTATATTTTCT-TC
1 TTATATATATTAT-TATATTATATATA
*
47724197 TTATCA-AT-TCT-TTATATTATATCT-
1 TTAT-ATATAT-TATTATATTATATATA
*
47724221 TTATATATATTATT-TATCGTATATGTATC
1 TTATATATATTATTATAT--TATA--TATA
47724250 TTATATATATATATT-TATGTATATTATA
1 TTATATATAT-TATTATAT-TATA-TATA
*
47724278 TT-TATATATTATTTATATTATCTATA
1 TTATATATATTA-TTATATTATATATA
47724304 -TATATATATATATTTATATT-TATA
1 TTATATATAT-TA-TTATATTATATA
47724328 ACCATGCACA
Statistics
Matches: 368, Mismatches: 55, Indels: 128
0.67 0.10 0.23
Matches are distributed among these distances:
21 1 0.00
22 12 0.03
23 41 0.11
24 46 0.12
25 71 0.19
26 70 0.19
27 43 0.12
28 40 0.11
29 36 0.10
30 8 0.02
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (26 bp):
TTATATATATTATTATATTATATATA
Found at i:47723900 original size:2 final size:2
Alignment explanation
Indices: 47723895--47724026 Score: 64
Period size: 2 Copynumber: 69.0 Consensus size: 2
47723885 ATTCTCTCTA
* * * * *
47723895 AT AT AT CT AT AT -T AT ACT AT CT AT AT CT AT AT -T AT TT AT CT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
47723936 AT AT AT CT AT AT CT -T AT AT AT TT AT AT AT TT AT AT GCT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
* * * *
47723978 AT -T A- AT CT AT AT AT AT GT -T TT CT AT AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47724016 AT -T AT AT AT AT
1 AT AT AT AT AT AT
47724027 TTTTATTATC
Statistics
Matches: 96, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
1 8 0.08
2 85 0.89
3 3 0.03
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (2 bp):
AT
Found at i:47723940 original size:15 final size:13
Alignment explanation
Indices: 47723895--47724022 Score: 85
Period size: 12 Copynumber: 9.8 Consensus size: 13
47723885 ATTCTCTCTA
47723895 ATATATCTATAT-T
1 ATATAT-TATATCT
47723908 ATACTATCTATATCT
1 ATA-TAT-TATATCT
47723923 ATATTATT-TATCT
1 ATA-TATTATATCT
47723936 ATATATCTATATCT
1 ATATAT-TATATCT
47723950 -TATA-TAT-T-T
1 ATATATTATATCT
47723959 ATATATTTATATGCT
1 ATATA-TTATAT-CT
47723974 ATATATTA-ATCT
1 ATATATTATATCT
* *
47723986 ATATATATGTTTTCT
1 ATATAT-T-ATATCT
*
47724001 ATATA-TATATAT
1 ATATATTATATCT
47724013 A-ATATTATAT
1 ATATATTATAT
47724023 ATATTTTTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 29
0.73 0.05 0.22
Matches are distributed among these distances:
9 1 0.01
10 5 0.05
11 6 0.06
12 23 0.24
13 21 0.22
14 18 0.19
15 21 0.22
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (13 bp):
ATATATTATATCT
Found at i:47723946 original size:27 final size:27
Alignment explanation
Indices: 47723907--47723991 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
47723897 ATATCTATAT
47723907 TATACTATCTATATCTATATTATTTATC
1 TATA-TATCTATATCTATATTATTTATC
47723935 TATATATCTATATCT-TATATATTTA--
1 TATATATCTATATCTATAT-TATTTATC
*
47723960 TATAT-T-TATATGCTATA-TATTAATC
1 TATATATCTATAT-CTATATTATTTATC
47723985 TATATAT
1 TATATAT
47723992 ATGTTTTCTA
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
23 10 0.20
24 3 0.06
25 12 0.24
26 4 0.08
27 17 0.34
28 4 0.08
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.54
Consensus pattern (27 bp):
TATATATCTATATCTATATTATTTATC
Found at i:47724067 original size:6 final size:6
Alignment explanation
Indices: 47724058--47724327 Score: 80
Period size: 6 Copynumber: 44.3 Consensus size: 6
47724048 CCTCTTCCTC
* *
47724058 TATTTA TATTT- T-TATA TATTTA T-TTTG TATTTA TATTTA TATATTA
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TAT-TTA
* * * * *
47724104 TTATTTC TA-TTA TTTTTT TA-TTA T-TTTT TATTT- TATCTTA TATATA
1 -TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TAT-TTA TATTTA
* * * *
47724150 TCTTCT- TATATTA T-TTTA TATATTA TATATA TATCTA TATTT- TCTTCT-
1 TATT-TA TAT-TTA TATTTA TAT-TTA TATTTA TATTTA TATTTA TATT-TA
** * * * ** *
47724198 TATCAA TTCTTTA TATTATA TCTTTA TATATA TTATTTA T-CGTA TATGTA
1 TATTTA -TATTTA TATT-TA TATTTA TATTTA -TATTTA TATTTA TATTTA
* *
47724248 TCTTATA TATATA TATTTA TGTATATTA TATTTA TATATTA T-TTATA
1 TATT-TA TATTTA TATTTA --TAT-TTA TATTTA TAT-TTA TATT-TA
* * *
47724295 TTATCTA TATATA TATATA TATTTA TATTTA TA
1 -TATTTA TATTTA TATTTA TATTTA TATTTA TA
47724328 ACCATGCACA
Statistics
Matches: 194, Mismatches: 41, Indels: 58
0.66 0.14 0.20
Matches are distributed among these distances:
4 2 0.01
5 29 0.15
6 109 0.56
7 44 0.23
8 7 0.04
9 3 0.02
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (6 bp):
TATTTA
Found at i:47724088 original size:27 final size:26
Alignment explanation
Indices: 47724056--47724129 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
47724046 AACCTCTTCC
47724056 TCTATTTATATTTTTATATATTTATTT
1 TCTATTTATATTTTTATATATTTA-TT
* *
47724083 TGTATTTATATTTATATAT-TATTATT
1 TCTATTTATATTTTTATATAT-TTATT
*
47724109 TCTA-TTATTTTTTTAT-TATTT
1 TCTATTTATATTTTTATATATTT
47724130 TTTATTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
24 3 0.08
25 11 0.28
26 6 0.15
27 20 0.50
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (26 bp):
TCTATTTATATTTTTATATATTTATT
Found at i:47724144 original size:20 final size:21
Alignment explanation
Indices: 47724091--47724144 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
47724081 TTTGTATTTA
47724091 TATTTATATATTATTATTTCTAT
1 TATTT-TAT-TTATTATTTCTAT
47724114 TATTTT-TTTATTATTT-T-T
1 TATTTTATTTATTATTTCTAT
47724132 TATTTTATCTTAT
1 TATTTTAT-TTAT
47724145 ATATATCTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 7 0.24
19 2 0.07
20 13 0.45
21 1 0.03
22 1 0.03
23 5 0.17
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (21 bp):
TATTTTATTTATTATTTCTAT
Found at i:47724162 original size:47 final size:48
Alignment explanation
Indices: 47724058--47724175 Score: 131
Period size: 47 Copynumber: 2.5 Consensus size: 48
47724048 CCTCTTCCTC
47724058 TATTTATA-T-TTTTATATATTTATTTTGTATTTATATTTATATATTAT
1 TATTTATATTATTTTATATA-TTATTTTGTATTTATATTTATATATTAT
* * *
47724105 TATTTCTATTATTTT-TTTATTATTTTTTATTT-TATCTTATATA-TAT
1 TATTTATATTATTTTATATATTATTTTGTATTTATAT-TTATATATTAT
47724151 CT-TCTTATATTATTTTATATATTAT
1 -TAT-TTATATTATTTTATATATTAT
47724176 ATATATATCT
Statistics
Matches: 60, Mismatches: 5, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
46 7 0.12
47 38 0.63
48 11 0.18
49 4 0.07
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (48 bp):
TATTTATATTATTTTATATATTATTTTGTATTTATATTTATATATTAT
Found at i:47724224 original size:56 final size:58
Alignment explanation
Indices: 47724142--47724322 Score: 148
Period size: 60 Copynumber: 3.2 Consensus size: 58
47724132 TATTTTATCT
* * *
47724142 TATATATATCT-TCTTATATTAT-TTTATATATTATATATATATCTATAT-TTTCTTCT-
1 TATATATATCTAT-GTATATTATATTTATATATTAT-TATATATCTATATGTATCTTATA
*
47724198 TATCA-AT-TCT-T-TATATTATATCTT-TATATATATTATTTATCGTATATGTATCTTATA
1 TAT-ATATATCTATGTATATTATAT-TTATATAT-TATTATATATC-TATATGTATCTTATA
* * *
47724255 TATATATATTTATGTATATTATATTTATATATTATTTATATTATCTATATATAT-ATATA
1 TATATATATCTATGTATATTATATTTATATATTA-TTATA-TATCTATATGTATCTTATA
*
47724314 TATTTATAT
1 TATATATAT
47724323 TTATAACCAT
Statistics
Matches: 103, Mismatches: 8, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
53 8 0.08
54 13 0.13
55 14 0.14
56 12 0.12
57 6 0.06
58 2 0.02
59 17 0.17
60 27 0.26
61 4 0.04
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.59
Consensus pattern (58 bp):
TATATATATCTATGTATATTATATTTATATATTATTATATATCTATATGTATCTTATA
Found at i:47724258 original size:2 final size:2
Alignment explanation
Indices: 47724251--47724327 Score: 70
Period size: 2 Copynumber: 40.0 Consensus size: 2
47724241 ATATGTATCT
* * * *
47724251 TA TA TA TA TA TA TT TA TG TA TA T- TA TA TT TA TA TA T- TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
47724291 TA TA T- TA TC TA TA TA TA TA TA TA TA TT TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47724328 ACCATGCACA
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
1 3 0.05
2 55 0.95
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (2 bp):
TA
Found at i:47724263 original size:45 final size:46
Alignment explanation
Indices: 47724205--47724322 Score: 111
Period size: 51 Copynumber: 2.5 Consensus size: 46
47724195 TCTTATCAAT
*
47724205 TCTT-TATAT-TATATCTTTATATATA-T-TAT-TTATCGTATATGTA
1 TCTTATATATATATATATTTATATATATTATATATTAT-GTATAT-TA
* *
47724248 TCTTATATATATATATTTATGTATATTATATTTATATATTATTTATATTA
1 TCTTATATATATATA--TATTTATA-TATA-TTATATATTATGTATATTA
47724298 TCTATATATATATATATATTTATAT
1 TCT-TATATATATATATATTTATAT
47724323 TTATAACCAT
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
43 4 0.07
44 5 0.08
45 4 0.07
47 6 0.10
48 5 0.08
49 7 0.11
50 6 0.10
51 20 0.33
52 4 0.07
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (46 bp):
TCTTATATATATATATATTTATATATATTATATATTATGTATATTA
Found at i:47724463 original size:14 final size:15
Alignment explanation
Indices: 47724446--47724482 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
47724436 GATGAATATA
47724446 TTATTTTATA-TTAT
1 TTATTTTATATTTAT
47724460 TTA-TTTATATTTAT
1 TTATTTTATATTTAT
*
47724474 TCATTTTAT
1 TTATTTTAT
47724483 TGCTAACGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 6 0.30
14 9 0.45
15 5 0.25
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATTTTATATTTAT
Found at i:47724616 original size:7 final size:7
Alignment explanation
Indices: 47724595--47724700 Score: 60
Period size: 7 Copynumber: 15.0 Consensus size: 7
47724585 TGTCTATATA
47724595 ATATTAT
1 ATATTAT
*
47724602 ATACTAT
1 ATATTAT
47724609 ATTATATAT
1 A-TAT-TAT
*
47724618 ATCTTA-
1 ATATTAT
47724624 AT-TTAGT
1 ATATTA-T
*
47724631 ATCTCTAT
1 ATAT-TAT
47724639 ATATTAT
1 ATATTAT
47724646 ATA-TAT
1 ATATTAT
47724652 ATATTAT
1 ATATTAT
47724659 AGTTATTAT
1 A--TATTAT
47724668 ATA-TAT
1 ATATTAT
*
47724674 TTATTAT
1 ATATTAT
*
47724681 TTATT-T
1 ATATTAT
* *
47724687 TTATTCT
1 ATATTAT
47724694 ATATTAT
1 ATATTAT
47724701 TGTTCTTATG
Statistics
Matches: 81, Mismatches: 7, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
5 3 0.04
6 19 0.23
7 37 0.46
8 9 0.11
9 13 0.16
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (7 bp):
ATATTAT
Found at i:47724672 original size:13 final size:12
Alignment explanation
Indices: 47724589--47724701 Score: 57
Period size: 11 Copynumber: 9.9 Consensus size: 12
47724579 TTCTTATGTC
*
47724589 TATATAATATTA
1 TATATATTATTA
47724601 TATACTA-TATTA
1 TATA-TATTATTA
*
47724613 TATATA-TCTTA
1 TATATATTATTA
* * *
47724624 -ATTTAGTATCTC
1 TATATATTAT-TA
47724636 TATATATTA-TA
1 TATATATTATTA
47724647 TATATA-TATTA
1 TATATATTATTA
47724658 TAGT-TATTA-TA
1 TA-TATATTATTA
47724669 TATAT-TTATTA
1 TATATATTATTA
*
47724680 T-T-TATTTTTA
1 TATATATTATTA
*
47724690 TTCTATATTATT
1 -TATATATTATT
47724702 GTTCTTATGA
Statistics
Matches: 79, Mismatches: 9, Indels: 25
0.70 0.08 0.22
Matches are distributed among these distances:
9 1 0.01
10 16 0.20
11 30 0.38
12 18 0.23
13 14 0.18
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (12 bp):
TATATATTATTA
Found at i:47724760 original size:16 final size:17
Alignment explanation
Indices: 47724724--47724762 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
47724714 TTAATATGAG
47724724 TATATTCTATGTATATA
1 TATATTCTATGTATATA
* *
47724741 TATATTCT-TTTATATC
1 TATATTCTATGTATATA
47724757 TATATT
1 TATATT
47724763 ATATATCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (17 bp):
TATATTCTATGTATATA
Found at i:47724889 original size:16 final size:16
Alignment explanation
Indices: 47724854--47724904 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
47724844 CTCTATATTC
*
47724854 TATATTATAATATATAT
1 TATA-TATATTATATAT
* * *
47724871 TATCTTTATTATATCT
1 TATATATATTATATAT
47724887 TATATATATTATA-AT
1 TATATATATTATATAT
47724902 TAT
1 TAT
47724905 TTGAGATATC
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 4 0.15
16 20 0.74
17 3 0.11
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATATATTATATAT
Found at i:47725097 original size:18 final size:17
Alignment explanation
Indices: 47725069--47725122 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
47725059 TGTGGCTAGC
47725069 TTTATTGTATAATATATA
1 TTTA-TGTATAATATATA
*
47725087 TGTTATGTATATTATATA
1 T-TTATGTATAATATATA
*
47725105 TTTA--TATTATATATA
1 TTTATGTATAATATATA
47725120 TTT
1 TTT
47725123 CGTATTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
15 12 0.38
17 3 0.09
18 14 0.44
19 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTATGTATAATATATA
Found at i:47725110 original size:13 final size:13
Alignment explanation
Indices: 47725094--47725118 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47725084 ATATGTTATG
47725094 TATATTATATATT
1 TATATTATATATT
47725107 TATATTATATAT
1 TATATTATATAT
47725119 ATTTCGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATATTATATATT
Found at i:47725114 original size:22 final size:22
Alignment explanation
Indices: 47725080--47725121 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
47725070 TTATTGTATA
* *
47725080 ATATATATGTTATGTATATTAT
1 ATATATATATTATATATATTAT
*
47725102 ATATTTATATTATATATATT
1 ATATATATATTATATATATT
47725122 TCGTATTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATATATATATTATATATATTAT
Found at i:47725171 original size:21 final size:23
Alignment explanation
Indices: 47725146--47725187 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
47725136 CTGTTTATTA
47725146 TTCTTATATA-TATAT-TATTTT
1 TTCTTATATATTATATATATTTT
*
47725167 TTCTTGTATATTATATATATT
1 TTCTTATATATTATATATATT
47725188 ATTTATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (23 bp):
TTCTTATATATTATATATATTTT
Found at i:47725239 original size:79 final size:78
Alignment explanation
Indices: 47725092--47725243 Score: 175
Period size: 79 Copynumber: 1.9 Consensus size: 78
47725082 ATATATGTTA
* * * *
47725092 TGTATATTATATATTTATATTATATATATTTCGTATTATTATTTCTGTTTATTATTCTTATATAT
1 TGTATATTATATATTTATATTATATAAATTTCGTATTATTATTTCTCTTCAATATTCTTATATAT
47725157 ATATTATTTTTTCT
66 ATA-TATTTTTTCT
* * * *
47725171 TGTATATTATATATATTAT-TTATATAAATTATTGTTTTA-TATTTTTCTTCAATATT-TTATCT
1 TGTATATTATATAT-TTATATTATATAAATT-TCGTATTATTATTTCTCTTCAATATTCTTATAT
47725233 ATTATATATTT
64 A-TATATATTT
47725244 ATCTTCCAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
78 11 0.18
79 41 0.66
80 10 0.16
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (78 bp):
TGTATATTATATATTTATATTATATAAATTTCGTATTATTATTTCTCTTCAATATTCTTATATAT
ATATATTTTTTCT
Found at i:47725423 original size:1 final size:1
Alignment explanation
Indices: 47725417--47725443 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
47725407 GTGTTATATA
47725417 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
47725444 ATATTCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:47725521 original size:2 final size:2
Alignment explanation
Indices: 47725508--47725601 Score: 60
Period size: 2 Copynumber: 50.5 Consensus size: 2
47725498 AAATGGTATT
* * *
47725508 TA TA TA TG TA TA TA TA TA TA TA TA TA T- TA T- TA TA TT TC T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
47725547 TA TA TA TA TA T- TA TC T- TA TA TG T- TA T- TGA GA T- TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
47725585 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
47725602 TTATGTAATA
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
1 8 0.11
2 66 0.89
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.54
Consensus pattern (2 bp):
TA
Found at i:47725572 original size:23 final size:23
Alignment explanation
Indices: 47725508--47725560 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
47725498 AAATGGTATT
*
47725508 TATA-TATGTATATAT-ATATATA
1 TATATTAT-TATATATCTTATATA
*
47725530 TATATTATTATATTTCTTATATA
1 TATATTATTATATATCTTATATA
47725553 TATATTAT
1 TATATTAT
47725561 CTTATATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TATATTATTATATATCTTATATA
Found at i:47725679 original size:24 final size:24
Alignment explanation
Indices: 47725652--47725718 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
47725642 GAACTATCTG
47725652 TATATATATTTTATGTATATTATA
1 TATATATATTTTATGTATATTATA
* *
47725676 TATATATATATTATTGTAT-TTTTA
1 TATATATATTTTA-TGTATATTATA
47725700 TATATAT-TATTTAT-TATAT
1 TATATATAT-TTTATGTATAT
47725719 GTACAGGGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 3 0.08
23 3 0.08
24 26 0.70
25 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (24 bp):
TATATATATTTTATGTATATTATA
Found at i:47725820 original size:20 final size:20
Alignment explanation
Indices: 47725759--47725917 Score: 83
Period size: 21 Copynumber: 7.5 Consensus size: 20
47725749 GTTCGACTTG
*
47725759 ATATATATATTATATATATTT
1 ATATCTATATTATATAT-TTT
47725780 ATATCTATATTTATATATTTT
1 ATATCTATA-TTATATATTTT
* *
47725801 ATATTTCTATTATATATTTTTTT
1 ATATCTATATTATATA---TTTT
* *
47725824 ATTAT-TGATTTTATTTATTTT
1 A-TATCT-ATATTATATATTTT
* *
47725845 ATATAT-TATTATATCTTATAT
1 ATATCTATATTATATATT-T-T
*
47725866 ATATCTATATT-CATATTTT
1 ATATCTATATTATATATTTT
*
47725885 AT-TCTTATATGGATATATCTCTT
1 ATATC-TATAT-TATATAT-T-TT
*
47725908 ATATATATAT
1 ATATCTATAT
47725918 ATGTATAATA
Statistics
Matches: 107, Mismatches: 15, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
18 2 0.02
19 16 0.15
20 12 0.11
21 38 0.36
22 13 0.12
23 15 0.14
24 11 0.10
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (20 bp):
ATATCTATATTATATATTTT
Found at i:47725875 original size:17 final size:17
Alignment explanation
Indices: 47725834--47725867 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
47725824 ATTATTGATT
*
47725834 TTATT-TATTTTATATA
1 TTATTATATCTTATATA
47725850 TTATTATATCTTATATA
1 TTATTATATCTTATATA
47725867 T
1 T
47725868 ATCTATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATATCTTATATA
Found at i:47725883 original size:44 final size:43
Alignment explanation
Indices: 47725759--47725915 Score: 117
Period size: 44 Copynumber: 3.6 Consensus size: 43
47725749 GTTCGACTTG
* * *
47725759 ATATATATATTATAT-ATATTTATATCTATATTTATATATTTT
1 ATATATATATTATATCTTATATATATCTATATTTATTTATTTT
* * * * *
47725801 ATATTTCTATTATATATT-TTTTTAT-TATTGATTTTATTTATTTT
1 ATATATATATTATATCTTATATATATCTA-T-A-TTTATTTATTTT
47725845 ATATAT-TATTATATCTTATATATATCTATATTCATATTTTATTCTT
1 ATATATATATTATATCTTATATATATCTATATT--TA-TTTATT-TT
** *
47725891 ATATGGATA-TATCTCTTATATATAT
1 ATATATATATTATATCTTATATATAT
47725916 ATATGTATAA
Statistics
Matches: 92, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 22 0.24
43 13 0.14
44 24 0.26
45 8 0.09
46 21 0.23
47 2 0.02
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (43 bp):
ATATATATATTATATCTTATATATATCTATATTTATTTATTTT
Found at i:47725917 original size:17 final size:17
Alignment explanation
Indices: 47725843--47725919 Score: 58
Period size: 17 Copynumber: 4.8 Consensus size: 17
47725833 TTTATTTATT
47725843 TTATATAT-TATTATATC
1 TTATATATATA-TATATC
*
47725860 TTATATATATCTATAT-
1 TTATATATATATATATC
*
47725876 TCATAT-T-T-TAT-TC
1 TTATATATATATATATC
** *
47725889 TTATATGGATATATCTC
1 TTATATATATATATATC
47725906 TTATATATATATAT
1 TTATATATATATAT
47725920 GTATAATATT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
12 1 0.02
13 8 0.17
14 1 0.02
15 2 0.04
16 8 0.17
17 27 0.56
18 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.56
Consensus pattern (17 bp):
TTATATATATATATATC
Found at i:47726114 original size:20 final size:21
Alignment explanation
Indices: 47726089--47726141 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
47726079 AAAGATATGG
* *
47726089 TATATATATATCTCTTATA-T
1 TATATATATATATATTATAGT
*
47726109 TATATATATTTATATTATATGT
1 TATATATATATATATTATA-GT
47726131 TATATATATAT
1 TATATATATAT
47726142 TTATGTATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 16 0.59
22 11 0.41
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (21 bp):
TATATATATATATATTATAGT
Found at i:47726114 original size:22 final size:22
Alignment explanation
Indices: 47726089--47726141 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
47726079 AAAGATATGG
*
47726089 TATATATATATCTCT-TATATTA
1 TATATATATATAT-TATATATTA
* *
47726111 TATATATTTATATTATATGTTA
1 TATATATATATATTATATATTA
47726133 TATATATAT
1 TATATATAT
47726142 TTATGTATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (22 bp):
TATATATATATATTATATATTA
Found at i:47726121 original size:15 final size:16
Alignment explanation
Indices: 47726089--47726128 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
47726079 AAAGATATGG
*
47726089 TATA-TATATATCTCT
1 TATATTATATATATCT
47726104 TATATTATATATAT-T
1 TATATTATATATATCT
47726119 TATATTATAT
1 TATATTATAT
47726129 GTTATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATTATATATATCT
Found at i:47726134 original size:18 final size:17
Alignment explanation
Indices: 47726113--47726147 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47726103 TTATATTATA
*
47726113 TATATTTATATTATATGT
1 TATATATATATT-TATGT
47726131 TATATATATATTTATGT
1 TATATATATATTTATGT
47726148 ATGTGTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TATATATATATTTATGT
Found at i:47726217 original size:22 final size:22
Alignment explanation
Indices: 47726192--47726233 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
47726182 TATATATTTA
* *
47726192 TGTTATATATTGTGTTATATGT
1 TGTTATATATTATATTATATGT
*
47726214 TGTTATCTATTATATTATAT
1 TGTTATATATTATATTATAT
47726234 TGTATATGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (22 bp):
TGTTATATATTATATTATATGT
Found at i:47726233 original size:47 final size:46
Alignment explanation
Indices: 47726130--47726233 Score: 115
Period size: 47 Copynumber: 2.2 Consensus size: 46
47726120 ATATTATATG
* * * *
47726130 TTATA-TATATATTTATGTATGTGTTTGTGTTATATTTTGTATGTA
1 TTATATTATATATTTATGTATATGATTGTGTTATATGTTGTATCTA
47726175 TTCAT-TGTATATATTTATGTTATAT-ATTGTGTTATATGTTGTTATCTA
1 TT-ATAT-TATATATTTATG-TATATGATTGTGTTATATGTTG-TATCTA
47726223 TTATATTATAT
1 TTATATTATAT
47726234 TGTATATGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
45 2 0.04
46 2 0.04
47 33 0.67
48 12 0.24
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (46 bp):
TTATATTATATATTTATGTATATGATTGTGTTATATGTTGTATCTA
Found at i:47726239 original size:12 final size:13
Alignment explanation
Indices: 47726224--47726307 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 13
47726214 TGTTATCTAT
47726224 TATAT-TATATTG
1 TATATGTATATTG
* *
47726236 TATATGTATGTACTA
1 TATATGTA--TATTG
47726251 TATATGTAATATGTG
1 TATATGT-ATAT-TG
* *
47726266 TTTAT-T-TATAG
1 TATATGTATATTG
47726277 TAATATGTATATTG
1 T-ATATGTATATTG
*
47726291 TATCT-TATATTG
1 TATATGTATATTG
47726303 TATAT
1 TATAT
47726308 ATTTTTATTC
Statistics
Matches: 54, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
11 2 0.04
12 22 0.41
13 6 0.11
14 8 0.15
15 15 0.28
16 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (13 bp):
TATATGTATATTG
Found at i:47726433 original size:15 final size:15
Alignment explanation
Indices: 47726396--47726449 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
47726386 TGTATATATA
* * *
47726396 TATATATATTTGATA
1 TATATATTTTTGTTT
47726411 TATAATATTTTTGTTT
1 TAT-ATATTTTTGTTT
* *
47726427 TATATATTTCTGTCT
1 TATATATTTTTGTTT
47726442 TATATATT
1 TATATATT
47726450 CTTATTCTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
15 21 0.64
16 12 0.36
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.61
Consensus pattern (15 bp):
TATATATTTTTGTTT
Found at i:47726514 original size:2 final size:2
Alignment explanation
Indices: 47726461--47726497 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
47726451 TTATTCTTAT
* *
47726461 TA TA TA TG TA TA TA TA TC TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47726498 CCTTAGTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:47726683 original size:24 final size:23
Alignment explanation
Indices: 47726656--47726703 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
47726646 CTGTATCTAT
* *
47726656 TTATTTATATACTTGTGTTGTATA
1 TTATGTATATA-TTGTGTTATATA
*
47726680 TTATGTATATATTTTGTTATATA
1 TTATGTATATATTGTGTTATATA
47726703 T
1 T
47726704 ATCTATGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.60
Consensus pattern (23 bp):
TTATGTATATATTGTGTTATATA
Found at i:47726720 original size:2 final size:2
Alignment explanation
Indices: 47726715--47726774 Score: 56
Period size: 2 Copynumber: 31.5 Consensus size: 2
47726705 TCTATGTTGG
*
47726715 AT AT AT AT AT AT AT AT AT AGT AT AT AT -T TT A- AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
* *
47726755 AT -T AT AT GT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
47726775 GCTATGCTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
1 4 0.08
2 42 0.88
3 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:47726962 original size:2 final size:2
Alignment explanation
Indices: 47726945--47727020 Score: 77
Period size: 2 Copynumber: 39.5 Consensus size: 2
47726935 CCGATAGATC
**
47726945 TA TA TA T- TA TA T- TA TA TA TA TA TA GG TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
47726984 TA AA TA TA TT TA TA TA TT TA TA TA TA TA TT TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47727021 TCGTATATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
1 3 0.05
2 56 0.95
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:47726962 original size:12 final size:11
Alignment explanation
Indices: 47726945--47727020 Score: 86
Period size: 10 Copynumber: 6.8 Consensus size: 11
47726935 CCGATAGATC
47726945 TATATATTATAT
1 TATATA-TATAT
47726957 TATATATATAT
1 TATATATATAT
47726968 AGGTATATATATAT
1 ---TATATATATAT
*
47726982 TATAAATATAT
1 TATATATATAT
47726993 T-TATATAT-T
1 TATATATATAT
47727002 TATATATATAT
1 TATATATATAT
47727013 T-TATATAT
1 TATATATAT
47727021 TCGTATATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
9 2 0.04
10 20 0.35
11 18 0.32
12 6 0.11
14 11 0.19
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (11 bp):
TATATATATAT
Found at i:47727206 original size:1 final size:1
Alignment explanation
Indices: 47727202--47727229 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
47727192 TTTTTTAAGA
47727202 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
47727230 ATTTATAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:47732522 original size:40 final size:40
Alignment explanation
Indices: 47732440--47732568 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
47732430 ATCCGGTAAG
47732440 CCGAA-GCA-TTGTGCGAGTTACT-AATCC-GGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
47732476 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
47732516 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
47732556 CCGAAGGCATTTG
1 CCGAAGGCATTTG
47732569 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
36 5 0.06
37 3 0.03
38 14 0.16
39 5 0.06
40 57 0.66
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:47732586 original size:80 final size:76
Alignment explanation
Indices: 47732440--47732601 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 76
47732430 ATCCGGTAAG
* * **
47732440 CCGAA-GCATTGTGCGAGTTACTAATCCGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGAAGGCATTGTGCGAGTTACTAAACCGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAAT
*
47732504 CCGGGTTAAGTC
66 CC-GGTTAAATC
*
47732516 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCA-TTGTGCGAGTTACTA-AACC-GGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CT
* *
47732580 ATATCCGGTTAAATT
62 AAATCCGGTTAAATC
47732595 CCGAAGG
1 CCGAAGG
47732602 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
76 5 0.07
77 3 0.04
78 15 0.21
79 19 0.26
80 31 0.42
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (76 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGTTAAATC
Found at i:47740532 original size:40 final size:40
Alignment explanation
Indices: 47740300--47740525 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
47740290 TTGAATGATG
* * * *
47740300 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
47740340 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47740380 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47740420 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47740460 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47740501 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47740526 AACGAGTAGC
Statistics
Matches: 173, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 162 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47740532 original size:120 final size:120
Alignment explanation
Indices: 47740300--47740558 Score: 305
Period size: 120 Copynumber: 2.2 Consensus size: 120
47740290 TTGAATGATG
* *
47740300 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
**
47740365 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * * **
47740420 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
47740483 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
47740540 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47740559 TACGTGATTT
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 93 0.77
121 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:47742046 original size:15 final size:15
Alignment explanation
Indices: 47742026--47742072 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
47742016 TCAAAGATGG
47742026 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* *
47742041 GTTTATGTAGATG-A
1 GTTTATGGATATGAA
*
47742055 -TTTATGGATATAAA
1 GTTTATGGATATGAA
47742069 GTTT
1 GTTT
47742073 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
13 9 0.36
14 2 0.08
15 14 0.56
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:47746625 original size:43 final size:42
Alignment explanation
Indices: 47746578--47746752 Score: 192
Period size: 43 Copynumber: 4.1 Consensus size: 42
47746568 TTTATTTGAA
***
47746578 AAAAATGCCAC-AAAAGATCATGAATTTTAGCAGCGTTTGTAGG
1 AAAAATGCCACTAAAAG-TCATGGCCTTTAGCAGCGTTTGT-GG
* *
47746621 AAAAATGCCTCTAAAAGTCATGGCCTTTAGCGGCGTTTGTGG
1 AAAAATGCCACTAAAAGTCATGGCCTTTAGCAGCGTTTGTGG
*
47746663 GAAAA-GCGCACTAAAAGTCATGGCCTTTAGCAGCGTTTGTGG
1 AAAAATGC-CACTAAAAGTCATGGCCTTTAGCAGCGTTTGTGG
** * * *
47746705 TAAAAGCGCCGCTAAAAGTCATGGCCTTTAGTAGCGTTTATGG
1 -AAAAATGCCACTAAAAGTCATGGCCTTTAGCAGCGTTTGTGG
*
47746748 GAAAA
1 AAAAA
47746753 GCACCGCTAA
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 41 0.36
43 63 0.56
44 7 0.06
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (42 bp):
AAAAATGCCACTAAAAGTCATGGCCTTTAGCAGCGTTTGTGG
Found at i:47746753 original size:43 final size:43
Alignment explanation
Indices: 47746603--47746764 Score: 227
Period size: 43 Copynumber: 3.8 Consensus size: 43
47746593 GATCATGAAT
* ** *
47746603 TTTAGCAGCGTTTGTAGGAAAAATGCCTCTAAAAGTCATGGCC
1 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGGCC
* *
47746646 TTTAGCGGCGTTTGTGGGAAAAGCG-CACTAAAAGTCATGGCC
1 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGGCC
*
47746688 TTTAGCAGCGTTTGTGGTAAAAGCGCCGCTAAAAGTCATGGCC
1 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGGCC
* * *
47746731 TTTAGTAGCGTTTATGGGAAAAGCACCGCTAAAA
1 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAA
47746765 TCCATGTTAC
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 39 0.37
43 67 0.63
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (43 bp):
TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGGCC
Found at i:47747180 original size:21 final size:21
Alignment explanation
Indices: 47747135--47747205 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
47747125 TCGCACTTTC
* *
47747135 TGCT-CTG-CTCTGCTACCAT
1 TGCTGCTGCCTCTGCTTCCCT
47747154 TGCTGCTGCCTCTGCTTCCCT
1 TGCTGCTGCCTCTGCTTCCCT
* * * *
47747175 TACTGCTGTCGCTGCCTCCCT
1 TGCTGCTGCCTCTGCTTCCCT
*
47747196 CGCTGCTGCC
1 TGCTGCTGCC
47747206 GTTGCCTCTC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
19 4 0.10
20 3 0.07
21 34 0.83
ACGTcount: A:0.04, C:0.42, G:0.20, T:0.34
Consensus pattern (21 bp):
TGCTGCTGCCTCTGCTTCCCT
Found at i:47747211 original size:21 final size:21
Alignment explanation
Indices: 47747155--47747225 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
47747145 TGCTACCATT
*
47747155 GCTGCTGCC-TCTGCTTCCCTTA
1 GCTGCTGCCGT-TGCCTCCC-TA
* * *
47747177 -CTGCTGTCGCTGCCTCCCTC
1 GCTGCTGCCGTTGCCTCCCTA
*
47747197 GCTGCTGCCGTTGCCTCTCTA
1 GCTGCTGCCGTTGCCTCCCTA
47747218 GCTGCTGC
1 GCTGCTGC
47747226 ATCCGCTCTA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.03
21 38 0.97
ACGTcount: A:0.03, C:0.42, G:0.23, T:0.32
Consensus pattern (21 bp):
GCTGCTGCCGTTGCCTCCCTA
Found at i:47752097 original size:49 final size:49
Alignment explanation
Indices: 47752025--47752218 Score: 194
Period size: 50 Copynumber: 3.9 Consensus size: 49
47752015 GCTGAAGCTA
* *
47752025 TCTGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * * *
47752074 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * * * *
47752124 TCTAATACTCGTAATAGCCTGCACTTAGTACTACACACGTGA-TAACAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* *
47752172 TTTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ---TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
47752219 TCGCAATAGA
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
47 3 0.03
49 37 0.32
50 39 0.33
51 38 0.32
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:47754403 original size:15 final size:15
Alignment explanation
Indices: 47754351--47754404 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
47754341 TAAAGATAAC
*
47754351 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
47754365 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
47754380 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
47754395 AAGAAACCCA
1 AAGAAACCCA
47754405 AGATACGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 11 0.33
15 19 0.58
16 3 0.09
ACGTcount: A:0.61, C:0.19, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:47757539 original size:99 final size:100
Alignment explanation
Indices: 47757425--47757609 Score: 248
Period size: 101 Copynumber: 1.9 Consensus size: 100
47757415 CTGGTACGCA
* *
47757425 TAGTACCCTGCACTTAGTACTACACATGCGACCAACAG-TTT-GGTACACGTAGTAGCCTGCACC
1 TAGTACCCTGCACTTAGTACTACACACGCGACC-ACAGTTTTGGGTACACATAGTAGCCTGCACC
* *
47757488 TAGTATTACACACGTGACCTCACCATCTAATACACG
65 TAGTACTACACACGCGACCTCACCATCTAATACACG
* * * * *
47757524 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCATAGTAGCCTGCACT
1 TAGTACCCTGCACTTAGTACTACACACGCGACCACAG-TTTTGGGTACACATAGTAGCCTGCACC
*
47757589 TAGTACTACACATGCGACCTC
65 TAGTACTACACACGCGACCTC
47757610 GCAATAGATC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
98 4 0.05
99 29 0.40
100 3 0.04
101 37 0.51
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTACCCTGCACTTAGTACTACACACGCGACCACAGTTTTGGGTACACATAGTAGCCTGCACCT
AGTACTACACACGCGACCTCACCATCTAATACACG
Found at i:47759459 original size:9 final size:9
Alignment explanation
Indices: 47759445--47759690 Score: 137
Period size: 9 Copynumber: 27.0 Consensus size: 9
47759435 TAAGTATAAT
47759445 TAAGTTATG
1 TAAGTTATG
47759454 TAAGTTATG
1 TAAGTTATG
* * *
47759463 ATATGATATA
1 -TAAGTTATG
*
47759473 T-ATTTATG
1 TAAGTTATG
47759481 T-A-TTATG
1 TAAGTTATG
*
47759488 TAAGTCATG
1 TAAGTTATG
* *
47759497 TAAATTATA
1 TAAGTTATG
47759506 TAAGTTATG
1 TAAGTTATG
* * *
47759515 AAATGTGATCTT
1 TAA-GT--TATG
*
47759527 TAAATTATG
1 TAAGTTATG
47759536 TAAGTTATG
1 TAAGTTATG
*
47759545 TAAATTATG
1 TAAGTTATG
47759554 TAAGTTATG
1 TAAGTTATG
* * *
47759563 AAATTTGATCTT
1 TAAGTT-A--TG
*
47759575 TAAATTATG
1 TAAGTTATG
*
47759584 TTAGTTATG
1 TAAGTTATG
47759593 T-A-TTATG
1 TAAGTTATG
47759600 TAAGTTATG
1 TAAGTTATG
*
47759609 TAAATTATG
1 TAAGTTATG
47759618 TAAGTTATG
1 TAAGTTATG
* * *
47759627 AAATTTGAACTT
1 TAAGTT--A-TG
*
47759639 TAAATTATG
1 TAAGTTATG
*
47759648 TTAGTTATG
1 TAAGTTATG
47759657 T-A-TTATG
1 TAAGTTATG
47759664 TAAGTTATG
1 TAAGTTATG
*
47759673 TAAATTATG
1 TAAGTTATG
47759682 TAAGTTATG
1 TAAGTTATG
47759691 AAATTTGAAC
Statistics
Matches: 178, Mismatches: 43, Indels: 32
0.70 0.17 0.13
Matches are distributed among these distances:
7 18 0.10
8 10 0.06
9 123 0.69
10 10 0.06
11 3 0.02
12 14 0.08
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:47759539 original size:48 final size:48
Alignment explanation
Indices: 47759482--47759613 Score: 205
Period size: 48 Copynumber: 2.8 Consensus size: 48
47759472 ATATTTATGT
* *
47759482 ATTATGTAAGTCATGTAAATTATATAAGTTATGAAATGTGATCTTTAA
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATGTGATCTTTAA
*
47759530 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATGTGATCTTTAA
*
47759578 ATTATGTTAGTTATGT--ATTATGTAAGTTATGTAAAT
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATG-AAAT
47759614 TATGTAAGTT
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
46 15 0.19
47 4 0.05
48 60 0.76
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.45
Consensus pattern (48 bp):
ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATGTGATCTTTAA
Found at i:47759579 original size:30 final size:30
Alignment explanation
Indices: 47759545--47759720 Score: 162
Period size: 30 Copynumber: 5.6 Consensus size: 30
47759535 GTAAGTTATG
47759545 TAAATTATGTAAGTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAAATTTGATCTT
* *
47759575 TAAATTATGTTAGTTATG-TATTATGTAAGT-TAT
1 TAAATTATGTAAGTTATGAAATT-TG--A-TCT-T
*
47759608 GTAAATTATGTAAGTTATGAAATTTGAACTT
1 -TAAATTATGTAAGTTATGAAATTTGATCTT
* *
47759639 TAAATTATGTTAGTTATG-TATTATGTAAGT-TAT
1 TAAATTATGTAAGTTATGAAATT-TG--A-TCT-T
*
47759672 GTAAATTATGTAAGTTATGAAATTTGAACTT
1 -TAAATTATGTAAGTTATGAAATTTGATCTT
47759703 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
47759721 CATTATGTAA
Statistics
Matches: 119, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
29 6 0.05
30 56 0.47
31 2 0.02
32 8 0.07
33 3 0.03
34 38 0.32
35 6 0.05
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGATCTT
Found at i:47759598 original size:64 final size:64
Alignment explanation
Indices: 47759530--47759751 Score: 390
Period size: 64 Copynumber: 3.5 Consensus size: 64
47759520 TGATCTTTAA
*
47759530 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTTAGTTATGT
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGTTATGT
47759594 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGTTATGT
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGTTATGT
* *
47759658 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGC
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGTTATGT
* * *
47759722 ATTATGTAAATTATATAAATTATGTGAGTT
1 ATTATGTAAGTTATGTAAATTATGTAAGTT
47759752 GCTAGTGAAC
Statistics
Matches: 152, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 152 1.00
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.46
Consensus pattern (64 bp):
ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGTTATGT
Found at i:47759601 original size:112 final size:111
Alignment explanation
Indices: 47759476--47759678 Score: 336
Period size: 112 Copynumber: 1.8 Consensus size: 111
47759466 TGATATATAT
*
47759476 TTATGTATTATGTAAGTCATGTAAATTATATAAGTTATGAAATGTGATCTTTAAATTATGTAAGT
1 TTATGTATTATGTAAGTCATGTAAATTATATAAGTTATGAAATGTGAACTTTAAATTATGTAAGT
47759541 TATGTAAATTATGTAAGTTATG-AAATTTGATCTTTAAATTATGTTAG
66 TATGT--ATTATGTAAGTTATGTAAATTTGATCTTTAAATTATGTTAG
* * * *
47759588 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGT
1 TTATGTATTATGTAAGTCATGTAAATTATATAAGTTATGAAATGTGAACTTTAAATTATGTAAGT
47759653 TATGTATTATGTAAGTTATGTAAATT
66 TATGTATTATGTAAGTTATGTAAATT
47759679 ATGTAAGTTA
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
110 15 0.18
111 5 0.06
112 65 0.76
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (111 bp):
TTATGTATTATGTAAGTCATGTAAATTATATAAGTTATGAAATGTGAACTTTAAATTATGTAAGT
TATGTATTATGTAAGTTATGTAAATTTGATCTTTAAATTATGTTAG
Found at i:47759727 original size:16 final size:16
Alignment explanation
Indices: 47759449--47759735 Score: 166
Period size: 18 Copynumber: 17.8 Consensus size: 16
47759439 TATAATTAAG
47759449 TTATGTAAGTTATGATA
1 TTATGTAAGTTATGA-A
* * * *
47759466 TGATATATATTTATGTA
1 TTATGTA-AGTTATGAA
*
47759483 TTATGTAAGTCATGTAAA
1 TTATGTAAGTTATG--AA
*
47759501 TTATATAAGTTATGAA
1 TTATGTAAGTTATGAA
* * *
47759517 --ATGTGA-TCTTTAAA
1 TTATGTAAGT-TATGAA
47759531 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATG--AA
47759549 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-AA
** *
47759566 TT-TG-ATCTT-TAAA
1 TTATGTAAGTTATGAA
* *
47759579 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGAA
47759595 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATG--AA
47759613 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-AA
* *
47759630 TT-TG-AACTT-TAAA
1 TTATGTAAGTTATGAA
* *
47759643 TTATGTTAGTTATGTA
1 TTATGTAAGTTATGAA
47759659 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATG--AA
47759677 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-AA
* *
47759694 TT-TG-AACTT-TAAA
1 TTATGTAAGTTATGAA
*
47759707 TTATGTAAGTTATGCA
1 TTATGTAAGTTATGAA
*
47759723 TTATGTAAATTAT
1 TTATGTAAGTTAT
47759736 ATAAATTATG
Statistics
Matches: 206, Mismatches: 42, Indels: 45
0.70 0.14 0.15
Matches are distributed among these distances:
13 13 0.06
14 17 0.08
15 20 0.10
16 64 0.31
17 27 0.13
18 65 0.32
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGAA
Found at i:47759734 original size:9 final size:9
Alignment explanation
Indices: 47759482--47759746 Score: 129
Period size: 9 Copynumber: 30.8 Consensus size: 9
47759472 ATATTTATGT
47759482 ATTATGTAA
1 ATTATGTAA
* *
47759491 GTCATGTAA
1 ATTATGTAA
*
47759500 ATTATATAA
1 ATTATGTAA
*
47759509 GTTATG-AA
1 ATTATGTAA
*
47759517 ATGTGATCTTTAA
1 AT-T-A--TGTAA
47759530 ATTATGTAA
1 ATTATGTAA
*
47759539 GTTATGTAA
1 ATTATGTAA
47759548 ATTATGTAA
1 ATTATGTAA
*
47759557 GTTATG-AA
1 ATTATGTAA
*
47759565 ATTTGATCTTTAA
1 A-TT-A--TGTAA
*
47759578 ATTATGTTA
1 ATTATGTAA
*
47759587 GTTATGT--
1 ATTATGTAA
47759594 ATTATGTAA
1 ATTATGTAA
*
47759603 GTTATGTAA
1 ATTATGTAA
47759612 ATTATGTAA
1 ATTATGTAA
*
47759621 GTTATG-AA
1 ATTATGTAA
47759629 ATT-TG--A
1 ATTATGTAA
*
47759635 ACT-T-TAA
1 ATTATGTAA
*
47759642 ATTATGTTA
1 ATTATGTAA
*
47759651 GTTATGT--
1 ATTATGTAA
47759658 ATTATGTAA
1 ATTATGTAA
*
47759667 GTTATGTAA
1 ATTATGTAA
47759676 ATTATGTAA
1 ATTATGTAA
*
47759685 GTTATG-AA
1 ATTATGTAA
47759693 ATT-TG--A
1 ATTATGTAA
*
47759699 ACT-T-TAA
1 ATTATGTAA
47759706 ATTATGTAA
1 ATTATGTAA
* *
47759715 GTTATG--C
1 ATTATGTAA
47759722 ATTATGTAA
1 ATTATGTAA
*
47759731 ATTATATAA
1 ATTATGTAA
47759740 ATTATGT
1 ATTATGT
47759747 GAGTTGCTAG
Statistics
Matches: 192, Mismatches: 40, Indels: 48
0.69 0.14 0.17
Matches are distributed among these distances:
6 8 0.04
7 27 0.14
8 15 0.08
9 126 0.66
10 2 0.01
11 2 0.01
12 5 0.03
13 7 0.04
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (9 bp):
ATTATGTAA
Found at i:47759807 original size:128 final size:127
Alignment explanation
Indices: 47759532--47759791 Score: 281
Period size: 128 Copynumber: 2.0 Consensus size: 127
47759522 ATCTTTAAAT
* * * * *
47759532 TATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTTAGTTATGTATT
1 TATGTAAG-AATGAAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGCATT
* * * ** * * * *
47759597 ATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTTAGTTATGTAT
65 ATGTAAATTATATAAATTATGTAAGTTATGAAACTTGAAAATAAAATTATGTTAATTAGGTAA
* *
47759660 TATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGCATT
1 TATGTAAG-AATGAAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGCATT
*
47759725 ATGTAAATTATATAAATTATGTGAGTTGCTAGTG-AACTTGAAAATAAAACTTAAT-TTAATTAG
65 ATGTAAATTATATAAATTATGTAAG-T--TA-TGAAACTTGAAAATAAAA-TT-ATGTTAATTAG
47759788 GTAA
124 GTAA
47759792 ATTGAAAATA
Statistics
Matches: 113, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
128 84 0.74
129 1 0.01
131 13 0.12
132 13 0.12
133 2 0.02
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (127 bp):
TATGTAAGAATGAAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGCATTA
TGTAAATTATATAAATTATGTAAGTTATGAAACTTGAAAATAAAATTATGTTAATTAGGTAA
Found at i:47759958 original size:99 final size:99
Alignment explanation
Indices: 47759845--47760419 Score: 578
Period size: 99 Copynumber: 5.7 Consensus size: 99
47759835 AATTAAAGTG
*
47759845 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGT-AATGTTAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAAAT-TGAAA
*
47759909 ATAAAATAAAATATTGAAATTAATTTTCGCGATTC
65 ATAAAATAAAATATTGAAATTAATTTTCGTGATTC
* * *
47759944 AAATAAAATAAAATATTTAAAATGAAACTTTAAATA-TACTTTAATTTAATTAGGTAAATTGAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAAC-TTAATTTAATTATGTAAATTGAAA
*** * *
47760008 ATAAAATTAAAGA-AGACAAAATATTTTTCGTGATT-
65 ATAAAA-TAAA-ATATTGAAATTAATTTTCGTGATTC
* * * * *
47760043 AAATTAAAGT-GAA-A--TAAAATAAAATATTTAAAATACAACTTAATTTAATTATAT-AATGTT
1 AAA-TAAAATAAAATATTTAAAATAAAA-CTTT-AAATACAACTTAATTTAATTATGTAAAT-TG
* *
47760103 AAAATAAAATAAAATATTGAAATTAATTTTCGCGATTA
62 AAAATAAAATAAAATATTGAAATTAATTTTCGTGATTC
* * *
47760141 AAATAAAATAAAATATTTAAAATGAAACTTTAAATATAATTTAATTTAATT-TGGTAAATTGAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTAT-GTAAATTGAAA
* * *** * * *
47760205 ATAAAATTAAAGAAAAAAAATATTTTTCGTGATTAAATTAAAGTG
65 ATAAAATAAAATATTGAAATTAATTTTCGTG-----A-T----TC
*
47760250 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGT-AATGTTAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAAAT-TGAAA
47760314 ATAAAATAAAATATTGAAATTAATTTTCGTGATTC
65 ATAAAATAAAATATTGAAATTAATTTTCGTGATTC
* * ** * *
47760349 AAATAAAATAAAACATTTAAAATGAAACTTTAAATATTATTTAATTTAATTAGGTAAATTGAAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAAATTGAAAA
47760414 TAAAAT
66 TAAAAT
47760420 CAAAGAAAAC
Statistics
Matches: 386, Mismatches: 60, Indels: 60
0.76 0.12 0.12
Matches are distributed among these distances:
96 10 0.03
97 31 0.08
98 37 0.10
99 174 0.45
100 37 0.10
101 10 0.03
103 1 0.00
104 2 0.01
105 1 0.00
108 3 0.01
109 79 0.20
110 1 0.00
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (99 bp):
AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAAATTGAAAA
TAAAATAAAATATTGAAATTAATTTTCGTGATTC
Found at i:47760121 original size:197 final size:195
Alignment explanation
Indices: 47759862--47760432 Score: 903
Period size: 197 Copynumber: 2.9 Consensus size: 195
47759852 ATAAAATATT
*
47759862 TAAAATAAAA-CTTT-AAATACAACTTAATTTAATTATGTAATGTTAAAATAAAATAAAATATTG
1 TAAAATAAAATATTTAAAATACAACTTAATTTAATTATGTAATGTTAAAATAAAATAAAATATTG
47759925 AAATTAATTTTCGCGATTCAAATAAAATAAAATATTTAAAATGAAACTTTAAATATACTTTAATT
66 AAATTAATTTTCGCGATTCAAATAAAATAAAATATTTAAAATGAAACTTTAAATATA-TTTAATT
47759990 TAATTAGGTAAATTGAAAATAAAATTAAAGAAGACAAAATATTTTTCGTGATTAAATTAAAGTGA
130 TAATTAGGTAAATTGAAAATAAAATTAAAGAA-ACAAAATATTTTTCGTGATTAAATTAAAGTGA
47760055 AA
194 AA
*
47760057 TAAAATAAAATATTTAAAATACAACTTAATTTAATTATATAATGTTAAAATAAAATAAAATATTG
1 TAAAATAAAATATTTAAAATACAACTTAATTTAATTATGTAATGTTAAAATAAAATAAAATATTG
*
47760122 AAATTAATTTTCGCGATTAAAATAAAATAAAATATTTAAAATGAAACTTTAAATATAATTTAATT
66 AAATTAATTTTCGCGATTCAAATAAAATAAAATATTTAAAATGAAACTTTAAATAT-ATTTAATT
* *
47760187 TAATTTGGTAAATTGAAAATAAAATTAAAGAAAAAAAATATTTTTCGTGATTAAATTAAAGTGAA
130 TAATTAGGTAAATTGAAAATAAAATTAAAGAAACAAAATATTTTTCGTGATTAAATTAAAGTGAA
47760252 A
195 A
47760253 TAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAATGTTAAAATAA
1 TAAAATAAAATA-TT----T---A----AAATACAACTTAATTTAATTATGTAATGTTAAAATAA
* *
47760318 AATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAACATTTAAAATGAAACTTTAAA
54 AATAAAATATTGAAATTAATTTTCGCGATTCAAATAAAATAAAATATTTAAAATGAAACTTTAAA
*
47760383 TATTATTTAATTTAATTAGGTAAATTGAAAATAAAATCAAAGAAAACAAA
119 TA-TATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAG-AAACAAA
47760433 TGTATGCCAT
Statistics
Matches: 347, Mismatches: 12, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
195 10 0.03
196 48 0.14
197 143 0.41
198 1 0.00
201 1 0.00
204 1 0.00
208 136 0.39
209 7 0.02
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (195 bp):
TAAAATAAAATATTTAAAATACAACTTAATTTAATTATGTAATGTTAAAATAAAATAAAATATTG
AAATTAATTTTCGCGATTCAAATAAAATAAAATATTTAAAATGAAACTTTAAATATATTTAATTT
AATTAGGTAAATTGAAAATAAAATTAAAGAAACAAAATATTTTTCGTGATTAAATTAAAGTGAAA
Found at i:47760311 original size:208 final size:210
Alignment explanation
Indices: 47760057--47760433 Score: 659
Period size: 208 Copynumber: 1.8 Consensus size: 210
47760047 TAAAGTGAAA
47760057 TAAAATAAAATATTTAAAATACAACTTAATTTAATTATATAATGTTAAAATAAAATAAAATATTG
1 TAAAATAAAATATTTAAAATACAACTTAATTTAATTATATAATGTTAAAATAAAATAAAATATTG
*
47760122 AAATTAATTTTCGCGATTAAAATAAAATAAAATATTTAAAATGAAACTTTAAATATAATTTAATT
66 AAATTAATTTTCGCGATTAAAATAAAATAAAACATTTAAAATGAAACTTTAAATATAATTTAATT
* *
47760187 TAATTTGGTAAATTGAAAATAAAATTAAAGAAAAAAAATATTTTTCGTGATTAAATTAAAGTGAA
131 TAATTAGGTAAATTGAAAATAAAATCAAAGAAAAAAAATATTTTTCGTGATTAAATTAAAGTGAA
47760252 ATAAAATAAAATATT
196 ATAAAATAAAATATT
* *
47760267 TAAAATAAAA-CTTT-AAATACAACTTAATTTAATTATGTAATGTTAAAATAAAATAAAATATTG
1 TAAAATAAAATATTTAAAATACAACTTAATTTAATTATATAATGTTAAAATAAAATAAAATATTG
* * *
47760330 AAATTAATTTTCGTGATTCAAATAAAATAAAACATTTAAAATGAAACTTTAAATATTATTTAATT
66 AAATTAATTTTCGCGATTAAAATAAAATAAAACATTTAAAATGAAACTTTAAATATAATTTAATT
*
47760395 TAATTAGGTAAATTGAAAATAAAATCAAAGAAAACAAAT
131 TAATTAGGTAAATTGAAAATAAAATCAAAGAAAAAAAAT
47760434 GTATGCCATG
Statistics
Matches: 158, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
208 145 0.92
209 3 0.02
210 10 0.06
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (210 bp):
TAAAATAAAATATTTAAAATACAACTTAATTTAATTATATAATGTTAAAATAAAATAAAATATTG
AAATTAATTTTCGCGATTAAAATAAAATAAAACATTTAAAATGAAACTTTAAATATAATTTAATT
TAATTAGGTAAATTGAAAATAAAATCAAAGAAAAAAAATATTTTTCGTGATTAAATTAAAGTGAA
ATAAAATAAAATATT
Found at i:47761306 original size:20 final size:20
Alignment explanation
Indices: 47761281--47761319 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
47761271 GAAGACTAAG
47761281 AAAATTAAACCGAAATTGGA
1 AAAATTAAACCGAAATTGGA
47761301 AAAATTAAACCGAAATTGG
1 AAAATTAAACCGAAATTGG
47761320 TTTTAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.21
Consensus pattern (20 bp):
AAAATTAAACCGAAATTGGA
Found at i:47762825 original size:21 final size:21
Alignment explanation
Indices: 47762801--47762854 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
47762791 CCCATAACCT
*
47762801 TAAACTCTAAACTATATCCTC
1 TAAACCCTAAACTATATCCTC
47762822 TAAACCCTAAACTATATCC-C
1 TAAACCCTAAACTATATCCTC
*
47762842 TTAAACCATAAAC
1 -TAAACCCTAAAC
47762855 CACAAAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 29 0.97
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAACCCTAAACTATATCCTC
Found at i:47762827 original size:28 final size:28
Alignment explanation
Indices: 47762762--47762834 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
47762752 TTAATCAAAA
47762762 CCCTAAACCTTAAAC-CATTAAACTATAT
1 CCCTAAACCTTAAACTCA-TAAACTATAT
*
47762790 CCCCATAACCTTAAACTC-TAAACTATAT
1 CCCTA-AACCTTAAACTCATAAACTATAT
*
47762818 CCTCTAAACCCTAAACT
1 CC-CTAAACCTTAAACT
47762835 ATATCCCTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
28 26 0.67
29 12 0.31
30 1 0.03
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (28 bp):
CCCTAAACCTTAAACTCATAAACTATAT
Found at i:47763131 original size:22 final size:22
Alignment explanation
Indices: 47763048--47763128 Score: 94
Period size: 22 Copynumber: 3.7 Consensus size: 22
47763038 ACAAAACAAT
*
47763048 AACCCCTAAGCCTTAACCCTTA
1 AACCCCTAACCCTTAACCCTTA
** * *
47763070 AACCATTAACCCATAACCCCTA
1 AACCCCTAACCCTTAACCCTTA
47763092 AACCCCTAA-CCTATAACCCTTA
1 AACCCCTAACCCT-TAACCCTTA
47763114 AACCCC-AACCCTTAA
1 AACCCCTAACCCTTAA
47763129 ACCATAAGCC
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 7 0.15
22 41 0.85
ACGTcount: A:0.37, C:0.42, G:0.01, T:0.20
Consensus pattern (22 bp):
AACCCCTAACCCTTAACCCTTA
Found at i:47763179 original size:15 final size:15
Alignment explanation
Indices: 47763126--47763173 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
47763116 CCCCAACCCT
*
47763126 TAAA-CCATAAGCCA
1 TAAACCCATAATCCA
*
47763140 TAAA--CATAATCCC
1 TAAACCCATAATCCA
47763153 TAAACCCATAATCCA
1 TAAACCCATAATCCA
47763168 TAAACC
1 TAAACC
47763174 TTTAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 11 0.38
14 4 0.14
15 14 0.48
ACGTcount: A:0.48, C:0.31, G:0.02, T:0.19
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:47764485 original size:21 final size:22
Alignment explanation
Indices: 47764454--47764496 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
47764444 CAAAATATAC
47764454 CAAATAATTGTATCAAAATCAT
1 CAAATAATTGTATCAAAATCAT
47764476 CAAA-AATTGTATCAAAATCAT
1 CAAATAATTGTATCAAAATCAT
47764497 ATCACAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (22 bp):
CAAATAATTGTATCAAAATCAT
Found at i:47765163 original size:47 final size:47
Alignment explanation
Indices: 47765109--47765240 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
47765099 CAAAATCGAT
* * *
47765109 AAGTACCTATATTATGGCCCGTAGCCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * * * * *
47765156 GAGTACCTATACCATGGCCCATAGCCAAATCAAGATAACTCCTCTCA
1 AAGTACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
*
47765203 AAATACCTATATCATGGCCCTGTAGCCAAATCAAGGTA
1 AAGTACCTATATCATGGCCC-GTAGCCAAATCAAGGTA
47765241 TTATTCGCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
47 55 0.79
48 15 0.21
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.23
Consensus pattern (47 bp):
AAGTACCTATATCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
Found at i:47776200 original size:53 final size:53
Alignment explanation
Indices: 47776131--47776237 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
47776121 TTTTCCTTTT
* * * *
47776131 TGAACTTACCAATGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTA
*
47776184 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTA
47776237 T
1 T
47776238 AGTATGTAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.04
53 46 0.96
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.34
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTA
Found at i:47778160 original size:25 final size:25
Alignment explanation
Indices: 47778126--47778220 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
47778116 GAGGAAGTGC
*
47778126 AAAAGGGCTTTGCCCTAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
47778151 AAAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
47778176 AAAAGGGCTTTGCCCCAGTTTA-TCA
1 AAAAGGGCTTTGCCCCAGTTTACT-G
47778201 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
47778221 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:47778233 original size:24 final size:24
Alignment explanation
Indices: 47778126--47778256 Score: 129
Period size: 25 Copynumber: 5.2 Consensus size: 24
47778116 GAGGAAGTGC
*
47778126 AAAAGGGCTTTGCCCTAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
* *
47778151 AAAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
*
47778176 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-G
*
47778201 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
**
47778224 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTTTGCC-CCAGTT-TATG
47778251 ATAAAG
1 A-AAAG
47778257 CAGCTATGCT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
23 5 0.06
24 11 0.12
25 65 0.72
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:47778503 original size:30 final size:32
Alignment explanation
Indices: 47778467--47778531 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 32
47778457 TGATATGAGT
47778467 TGTGAATTAT-AAAAGGCTTCAGCCCAGTA-A
1 TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
*
47778497 TGTGAATTATGAAGAGGCTTCAGCCCAGTATA
1 TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
47778529 TGT
1 TGT
47778532 TGAGATTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 10 0.31
31 18 0.56
32 4 0.12
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (32 bp):
TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
Found at i:47789888 original size:30 final size:31
Alignment explanation
Indices: 47789852--47789911 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
47789842 TGATATGAGT
47789852 TGTGAATTAT-AAGAGGCTTCAGCCCAGTAA
1 TGTGAATTATGAAGAGGCTTCAGCCCAGTAA
*
47789882 TGTGAATTATGAAGAGGTTTCAGCCCAGTA
1 TGTGAATTATGAAGAGGCTTCAGCCCAGTA
47789912 TATCTTGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 10 0.36
31 18 0.64
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (31 bp):
TGTGAATTATGAAGAGGCTTCAGCCCAGTAA
Found at i:47790677 original size:54 final size:54
Alignment explanation
Indices: 47790585--47790742 Score: 235
Period size: 54 Copynumber: 2.9 Consensus size: 54
47790575 GGGGTGTTAC
* * * *
47790585 ATAGTAACTCATCAATGCCATGTCTCGACATGGTCTTACATGATTTCCTTGCCTT
1 ATAG-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTT
* *
47790640 ATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACGTAATTTCCTTGCCTT
1 ATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTT
* *
47790694 ATAGAACTTATCAATGCCATGCCTTGGTATGGTCTTACATGATATCCTT
1 ATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
47790743 ATCTTACCAA
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 89 0.96
55 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (54 bp):
ATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTT
Found at i:47790776 original size:47 final size:47
Alignment explanation
Indices: 47790721--47790842 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
47790711 CATGCCTTGG
* *
47790721 TATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 TATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
47790768 TATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 TATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
47790815 CATGGTCTTACATGGTATCCTTGTCTTA
1 TATGGTCTTACATGGTATCCTTGTCTTA
47790843 GTGCTAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (47 bp):
TATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:47795359 original size:40 final size:40
Alignment explanation
Indices: 47795315--47795502 Score: 292
Period size: 40 Copynumber: 4.7 Consensus size: 40
47795305 GCTACTTGCT
* *
47795315 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
*
47795355 CAAATGCCTTCGGGACTTAGCCCGGTTATATTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
47795395 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
47795435 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACT-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCA-CA
47795474 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
47795503 CATCCGAATA
Statistics
Matches: 137, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 101 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:47797784 original size:29 final size:27
Alignment explanation
Indices: 47797746--47797802 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
47797736 AATTTTTGGG
**
47797746 TTTTCTGTGTTTCTGTGTTTTTTAAAATA
1 TTTTCTGTG-TTCTG-GTTGGTTAAAATA
*
47797775 TTTTGTGTGTTCTGGTTGGTTAAAATA
1 TTTTCTGTGTTCTGGTTGGTTAAAATA
47797802 T
1 T
47797803 ATATTTTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.48
28 5 0.20
29 8 0.32
ACGTcount: A:0.18, C:0.05, G:0.19, T:0.58
Consensus pattern (27 bp):
TTTTCTGTGTTCTGGTTGGTTAAAATA
Found at i:47798976 original size:19 final size:19
Alignment explanation
Indices: 47798952--47798996 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
47798942 TTTTGGGCTT
47798952 AATGGGCTAAAAACGGGCC
1 AATGGGCTAAAAACGGGCC
* *
47798971 AATGGGCTGAAAACTGGCC
1 AATGGGCTAAAAACGGGCC
47798990 AATGGGC
1 AATGGGC
47798997 CAATGGGCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.33, T:0.13
Consensus pattern (19 bp):
AATGGGCTAAAAACGGGCC
Found at i:47799321 original size:27 final size:26
Alignment explanation
Indices: 47799283--47799342 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
47799273 CCACATATAT
* *
47799283 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
47799309 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
47799336 ATATCTG
1 ATATCTG
47799343 GCAGCCTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:47799733 original size:19 final size:19
Alignment explanation
Indices: 47799711--47799750 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
47799701 TTTTTCTAAG
*
47799711 TTAGTTTATTTTTATTATT
1 TTAGTTTACTTTTATTATT
47799730 TTAGTTTACTTTTATTATT
1 TTAGTTTACTTTTATTATT
47799749 TT
1 TT
47799751 TATATTCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (19 bp):
TTAGTTTACTTTTATTATT
Found at i:47807695 original size:20 final size:20
Alignment explanation
Indices: 47807670--47807816 Score: 116
Period size: 20 Copynumber: 7.3 Consensus size: 20
47807660 AAAATGAAAA
*
47807670 AGTGCCCCTGTTTGCACATC
1 AGTGCCCTTGTTTGCACATC
* *
47807690 AGTGCCCTTGTTTGTACTTC
1 AGTGCCCTTGTTTGCACATC
* * *
47807710 -GATACCCCTATTTGCACATC
1 AG-TGCCCTTGTTTGCACATC
* * *
47807730 AGTGCCCTTGATTGTACTTC
1 AGTGCCCTTGTTTGCACATC
* * *
47807750 GGTACCCTTATTTGCACATC
1 AGTGCCCTTGTTTGCACATC
* * *
47807770 AGTGCCATTGTTTGTACTTC
1 AGTGCCCTTGTTTGCACATC
* * *
47807790 GGTACCCTTGATTGCACATC
1 AGTGCCCTTGTTTGCACATC
47807810 AGTGCCC
1 AGTGCCC
47807817 CTGATTATAC
Statistics
Matches: 91, Mismatches: 34, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
19 1 0.01
20 89 0.98
21 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (20 bp):
AGTGCCCTTGTTTGCACATC
Found at i:47807846 original size:40 final size:41
Alignment explanation
Indices: 47807674--47807849 Score: 227
Period size: 40 Copynumber: 4.4 Consensus size: 41
47807664 TGAAAAAGTG
* *
47807674 CCCCTG-TTTGCACATCAGTGCCCTTGTTTGTACTTCGATA
1 CCCCTGATTTGCACATCAGTGCCCTTGATTGTACTTCGGTA
47807714 CCCCT-ATTTGCACATCAGTGCCCTTGATTGTACTTCGGTA
1 CCCCTGATTTGCACATCAGTGCCCTTGATTGTACTTCGGTA
* * *
47807754 -CCCTTATTTGCACATCAGTGCCATTGTTTGTACTTCGGTA
1 CCCCTGATTTGCACATCAGTGCCCTTGATTGTACTTCGGTA
* * * *
47807794 CCCTTGA-TTGCACATCAGTGCCCCTGATTATACTTTGGTA
1 CCCCTGATTTGCACATCAGTGCCCTTGATTGTACTTCGGTA
*
47807834 CCCCTGA-ATGCACATC
1 CCCCTGATTTGCACATC
47807850 TGTTTCCCTG
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 4 0.03
40 112 0.93
41 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (41 bp):
CCCCTGATTTGCACATCAGTGCCCTTGATTGTACTTCGGTA
Found at i:47807869 original size:40 final size:40
Alignment explanation
Indices: 47807682--47807880 Score: 177
Period size: 40 Copynumber: 5.0 Consensus size: 40
47807672 TGCCCCTGTT
* * * *
47807682 TGCACATCAGTGCCCTTGTTTGTACTTCGATACCCCT-ATT
1 TGCACATCAGTGCCCCTGTTTGTACTTTGGTACCCCTGA-A
* * * * *
47807722 TGCACATCAGTGCCCTTGATTGTACTTCGGTA-CCCTTATT
1 TGCACATCAGTGCCCCTGTTTGTACTTTGGTACCCCTGA-A
** * * *
47807762 TGCACATCAGTGCCATTGTTTGTACTTCGGTACCCTTGAT
1 TGCACATCAGTGCCCCTGTTTGTACTTTGGTACCCCTGAA
* *
47807802 TGCACATCAGTGCCCCTGATTATACTTTGGTACCCCTGAA
1 TGCACATCAGTGCCCCTGTTTGTACTTTGGTACCCCTGAA
* ** * *
47807842 TGCACATCTGTTTCCCTGTTTGCACTTTGGTTCCCCTGA
1 TGCACATCAGTGCCCCTGTTTGTACTTTGGTACCCCTGA
47807881 TCACACATTT
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
39 4 0.03
40 129 0.94
41 4 0.03
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.37
Consensus pattern (40 bp):
TGCACATCAGTGCCCCTGTTTGTACTTTGGTACCCCTGAA
Found at i:47809378 original size:20 final size:22
Alignment explanation
Indices: 47809353--47809392 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
47809343 GGTATAGAAA
47809353 TTTGGT-TATTTT-ATGCATGT
1 TTTGGTATATTTTAATGCATGT
*
47809373 TTTGGTATGTTTTAATGCAT
1 TTTGGTATATTTTAATGCAT
47809393 TGGTCATGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.17, C:0.05, G:0.20, T:0.57
Consensus pattern (22 bp):
TTTGGTATATTTTAATGCATGT
Found at i:47809584 original size:43 final size:43
Alignment explanation
Indices: 47809485--47809575 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
47809475 TACAGCTTAA
* *
47809485 GACAC-GGACGTGTACCTCAACCGTTTATGACACACGACTATGT
1 GACACAGG-CGTGTGCCTCAACCGTGTATGACACACGACTATGT
*
47809528 GACACAGGCGTGTGCCTCAGCCGTGTATGACACACGACTATGT
1 GACACAGGCGTGTGCCTCAACCGTGTATGACACACGACTATGT
47809571 GACAC
1 GACAC
47809576 TATCGTGTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (43 bp):
GACACAGGCGTGTGCCTCAACCGTGTATGACACACGACTATGT
Found at i:47825311 original size:46 final size:46
Alignment explanation
Indices: 47825261--47825436 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
47825251 TGATTGAGCA
47825261 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47825307 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
47825352 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
47825400 CCCGAGCTCATTGAGTTGAGCCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47825437 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47825417 original size:93 final size:93
Alignment explanation
Indices: 47825258--47825429 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
47825248 GGATGATTGA
* * *
47825258 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
47825323 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGCCCGAGTTCGTGAGATGTAACTAG
* *
47825351 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
47825416 TGAGCCCGAGTTCG
66 TGAGCCCGAGTTCG
47825430 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGCCCGAGTTCGTGAGATGTAACTAG
Found at i:47836841 original size:46 final size:46
Alignment explanation
Indices: 47836788--47836960 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
47836778 ATGTTGACCA
*
47836788 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTGACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGACGAATG
* * *
47836834 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTA--ACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATG-ACGAAT-G
* *
47836878 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATG-CGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGACGAATG
* * * * *
47836925 CCCGAGCTCATTGAGTTGAGCCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
47836961 GGCGGGTTAC
Statistics
Matches: 105, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 33 0.31
46 56 0.53
47 4 0.04
48 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGACGAATG
Found at i:47843403 original size:22 final size:22
Alignment explanation
Indices: 47843378--47843429 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
47843368 ACGTGCTACT
47843378 CACTAAG-TCTGAATAACACTAG
1 CACTAAGCT-TGAATAACACTAG
*
47843400 CACTAAGCTTGATTAACACTAG
1 CACTAAGCTTGAATAACACTAG
47843422 CACTAAGC
1 CACTAAGC
47843430 CTGCTAGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 27 0.96
23 1 0.04
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.23
Consensus pattern (22 bp):
CACTAAGCTTGAATAACACTAG
Found at i:47843442 original size:16 final size:16
Alignment explanation
Indices: 47843421--47843464 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
47843411 ATTAACACTA
47843421 GCACTAAGCCTGCTAG
1 GCACTAAGCCTGCTAG
* *
47843437 GCACTAAGCTTGTTAG
1 GCACTAAGCCTGCTAG
*
47843453 GCTCTAAGCCTG
1 GCACTAAGCCTG
47843465 ATGAACACCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (16 bp):
GCACTAAGCCTGCTAG
Found at i:47843492 original size:38 final size:38
Alignment explanation
Indices: 47843450--47843549 Score: 130
Period size: 38 Copynumber: 2.6 Consensus size: 38
47843440 CTAAGCTTGT
* * *
47843450 TAGGCTCTAAGCCTG-ATGAACACCGGAACTAATCCTAC
1 TAGGCACTAAGCCTGAAT-AACACCAGAACTAAGCCTAC
* **
47843488 TAGGCACTAAGCCTGAATAACATCAGCTCTAAGCCTAC
1 TAGGCACTAAGCCTGAATAACACCAGAACTAAGCCTAC
47843526 TAGGCACTAAGCCTGAATAACACC
1 TAGGCACTAAGCCTGAATAACACC
47843550 TCATTTCAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 52 0.96
39 2 0.04
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (38 bp):
TAGGCACTAAGCCTGAATAACACCAGAACTAAGCCTAC
Found at i:47854804 original size:23 final size:23
Alignment explanation
Indices: 47854778--47854823 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
47854768 TTTACAAAGG
*
47854778 ATGTTTGAACAAATTCAGCTGCT
1 ATGTTTGAACAAATCCAGCTGCT
47854801 ATGTTTGAACAAATCCAGCTGCT
1 ATGTTTGAACAAATCCAGCTGCT
47854824 CAACAACCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (23 bp):
ATGTTTGAACAAATCCAGCTGCT
Found at i:47856299 original size:28 final size:28
Alignment explanation
Indices: 47856259--47856344 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
47856249 ATGAGCATGA
*
47856259 ATATGAATGTGATTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* * *
47856287 ATATAAATGTGATTTAGGCCTCATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
47856316 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
47856344 A
1 A
47856345 AATATAGGTA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
28 25 0.52
29 23 0.48
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:47856316 original size:29 final size:29
Alignment explanation
Indices: 47856259--47856329 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
47856249 ATGAGCATGA
*
47856259 ATATGAATGTGA-TTGGGCCTAACGGGCC
1 ATATGAATGTGATTTAGGCCTAACGGGCC
* * *
47856287 ATATAAATGTGATTTAGGCCTCATGGGCC
1 ATATGAATGTGATTTAGGCCTAACGGGCC
*
47856316 ATATGAATATGATT
1 ATATGAATGTGATT
47856330 GGGCTTAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 11 0.31
29 25 0.69
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTAGGCCTAACGGGCC
Found at i:47857387 original size:21 final size:22
Alignment explanation
Indices: 47857349--47857396 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
47857339 GTAATTGAAA
**
47857349 GGTTTCTTTTTAAGTTAATTAG
1 GGTTTCTTTTTAAGTTAAGAAG
**
47857371 GGTTTCTTTTT-TTTTAAGAAG
1 GGTTTCTTTTTAAGTTAAGAAG
47857392 GGTTT
1 GGTTT
47857397 TCAATAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.19, C:0.04, G:0.21, T:0.56
Consensus pattern (22 bp):
GGTTTCTTTTTAAGTTAAGAAG
Found at i:47863604 original size:16 final size:16
Alignment explanation
Indices: 47863579--47863614 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
47863569 ATGTATCGGC
47863579 AAAAGATGAAATGCCG
1 AAAAGATGAAATGCCG
*
47863595 AAAAGCTGAAATGCCG
1 AAAAGATGAAATGCCG
47863611 AAAA
1 AAAA
47863615 TCCAAAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.14, G:0.22, T:0.11
Consensus pattern (16 bp):
AAAAGATGAAATGCCG
Found at i:47863887 original size:29 final size:29
Alignment explanation
Indices: 47863832--47863901 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 29
47863822 ATGAGCATGA
*
47863832 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAACGGGCC
* *
47863860 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAACGGGCC
*
47863889 -TATGAATATGATT
1 ATATGAATGTGATT
47863902 AGGCTTAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 22 0.61
29 14 0.39
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAACGGGCC
Found at i:47871511 original size:28 final size:28
Alignment explanation
Indices: 47871444--47871597 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
47871434 ATATTAAGTC
* * *
47871444 CGCACACTCAGTGCTATATAATC-AACC
1 CGCACACTTAGTGCTACATAATCAAACT
*
47871471 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47871499 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47871527 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47871555 CGCACACTTAGTGCTACATAATCTAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47871583 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47871598 GTACAATTTA
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 22 0.18
28 99 0.82
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:47873041 original size:13 final size:13
Alignment explanation
Indices: 47873023--47873047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47873013 TCTCTTCCTT
47873023 TTTAATTCCTTTC
1 TTTAATTCCTTTC
47873036 TTTAATTCCTTT
1 TTTAATTCCTTT
47873048 TAATTTGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTCCTTTC
Found at i:47876439 original size:40 final size:40
Alignment explanation
Indices: 47876201--47876425 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
47876191 TTGAATGATG
* * * *
47876201 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
47876241 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
47876281 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47876320 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47876360 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47876401 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47876426 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47876447 original size:119 final size:119
Alignment explanation
Indices: 47876201--47876458 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
47876191 TTGAATGATG
* *
47876201 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
47876266 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
47876320 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
47876383 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAA
* *
47876440 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47876459 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:47884349 original size:79 final size:81
Alignment explanation
Indices: 47884213--47884397 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
47884203 TTGAATGATG
*
47884213 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
47884277 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
47884292 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47884354 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
47884372 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47884398 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:47884411 original size:40 final size:40
Alignment explanation
Indices: 47884214--47884397 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
47884204 TGAATGATGT
* * * *
47884214 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
47884254 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
47884294 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
47884332 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
47884373 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47884398 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:47884419 original size:79 final size:79
Alignment explanation
Indices: 47884266--47884430 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
47884256 GGACTAAGAT
* **
47884266 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47884331 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47884345 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47884408 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47884424 CCGAAGG
1 CCGAAGG
47884431 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47886969 original size:20 final size:20
Alignment explanation
Indices: 47886940--47886983 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
47886930 CAATTCATTC
*
47886940 TCATTCATATAATCAACAAT
1 TCATTCATATAACCAACAAT
* *
47886960 TCATTTATATAACCAAGAAT
1 TCATTCATATAACCAACAAT
47886980 TCAT
1 TCAT
47886984 CTGTATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.36
Consensus pattern (20 bp):
TCATTCATATAACCAACAAT
Found at i:47886990 original size:20 final size:20
Alignment explanation
Indices: 47886946--47886991 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
47886936 ATTCTCATTC
* *
47886946 ATATAATCAACAATTCATTT
1 ATATAACCAACAATTCATCT
*
47886966 ATATAACCAAGAATTCATCT
1 ATATAACCAACAATTCATCT
*
47886986 GTATAA
1 ATATAA
47886992 TTGTTAATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (20 bp):
ATATAACCAACAATTCATCT
Found at i:47891050 original size:33 final size:33
Alignment explanation
Indices: 47891013--47891159 Score: 95
Period size: 33 Copynumber: 4.4 Consensus size: 33
47891003 ATAACCCGGT
*
47891013 TATGGTCTTATCATCAGA-ATGTCATAGCCCAGC
1 TATGGTCTTA-CATCAAAGATGTCATAGCCCAGC
* * * * * * *
47891046 TATGGTCTTACATATAAATACTATCATGGTCTAAC
1 TATGGTCTTACAT-CAAAGA-TGTCATAGCCCAGC
* * *
47891081 CATGGTCTTACATTC-AAGATGTCATAACCCAGT
1 TATGGTCTTACA-TCAAAGATGTCATAGCCCAGC
* *
47891114 TATGGTCTTTTCATTAAA-AT-TCCATAGCCCAGC
1 TATGGTC-TTACATCAAAGATGT-CATAGCCCAGC
47891147 TATGGTCTTACAT
1 TATGGTCTTACAT
47891160 ATAAATACTG
Statistics
Matches: 84, Mismatches: 23, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
32 9 0.11
33 44 0.52
34 10 0.12
35 20 0.24
36 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (33 bp):
TATGGTCTTACATCAAAGATGTCATAGCCCAGC
Found at i:47891107 original size:101 final size:101
Alignment explanation
Indices: 47890979--47891183 Score: 288
Period size: 101 Copynumber: 2.0 Consensus size: 101
47890969 CATGGCCCTG
* * *
47890979 CCATGGTCTTACATTCGTAGTACCATAACCCGGTTATGGTCTTATCATCAGAATGT-CATAGCCC
1 CCATGGTCTTACATTCGAAGTACCATAACCCAGTTATGGTCTTATCATCAAAAT-TCCATAGCCC
* *
47891043 AGCTATGGTCTTACATATAAATACTATCATGGTCTAA
65 AGCTATGGTCTTACATATAAATACTACCATGGTCCAA
** * *
47891080 CCATGGTCTTACATTC-AAGATGTCATAACCCAGTTATGGTCTTTTCATTAAAATTCCATAGCCC
1 CCATGGTCTTACATTCGAAG-TACCATAACCCAGTTATGGTCTTATCATCAAAATTCCATAGCCC
*
47891144 AGCTATGGTCTTACATATAAATACTGCCATGGTCCAA
65 AGCTATGGTCTTACATATAAATACTACCATGGTCCAA
47891181 CCA
1 CCA
47891184 CAGGCTTACG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
100 3 0.03
101 89 0.97
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
CCATGGTCTTACATTCGAAGTACCATAACCCAGTTATGGTCTTATCATCAAAATTCCATAGCCCA
GCTATGGTCTTACATATAAATACTACCATGGTCCAA
Found at i:47891785 original size:21 final size:20
Alignment explanation
Indices: 47891757--47891796 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
47891747 CAAATCTTAT
47891757 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
47891777 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
47891797 AAAGCTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:47898302 original size:25 final size:24
Alignment explanation
Indices: 47898268--47898395 Score: 100
Period size: 25 Copynumber: 5.2 Consensus size: 24
47898258 TAGGGATTAT
47898268 CGATTTCAGCTCGTGAGAGCTTAC
1 CGATTTCAGCTCGTGAGAGCTTAC
**
47898292 CGATTCTCAGCTTAT-ATGAGCTTAC
1 CGATT-TCAGCTCGTGA-GAGCTTAC
* * *
47898317 CAATTTCAACTC-TAGAGAGCTTAT
1 CGATTTCAGCTCGT-GAGAGCTTAC
*
47898341 AGATTTTCAGCTCGT-ATGAGCTTAC
1 CGA-TTTCAGCTCGTGA-GAGCTTAC
* * *
47898366 CGATTTATAGCTTGTGAGAGCATAC
1 CGATTT-CAGCTCGTGAGAGCTTAC
47898391 CGATT
1 CGATT
47898396 CATAGCTCGT
Statistics
Matches: 81, Mismatches: 14, Indels: 17
0.72 0.12 0.15
Matches are distributed among these distances:
23 1 0.01
24 23 0.28
25 55 0.68
26 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (24 bp):
CGATTTCAGCTCGTGAGAGCTTAC
Found at i:47898411 original size:25 final size:25
Alignment explanation
Indices: 47898349--47898413 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
47898339 ATAGATTTTC
* *
47898349 AGCTCGTATGAGCTTACCGATTTAT
1 AGCTCGTATGAGCATACCGATTCAT
*
47898374 AGCTTGTGA-GAGCATACCGATTCAT
1 AGCTCGT-ATGAGCATACCGATTCAT
47898399 AGCTCGTATGAGCAT
1 AGCTCGTATGAGCAT
47898414 TATTTACAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTCAT
Found at i:47901511 original size:27 final size:28
Alignment explanation
Indices: 47901348--47901498 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
47901338 GAGATTGGCG
* * * *
47901348 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
47901377 CTAAGTGTGCGAGTTTAATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
47901405 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
47901433 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
47901461 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
47901488 CTGAGTGTGCG
1 CTAAGTGTGCG
47901499 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:47903628 original size:43 final size:41
Alignment explanation
Indices: 47903558--47903672 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 41
47903548 GTAAACTCGT
* * ** *
47903558 ACAATACCATATCCCAGATATGGTCTTACATGTTATCAAAT
1 ACAATGCCATATCCCAGACATGGTCTTACATGAAATCAAAG
* *
47903599 ATCAATGCCACTATCCCAGACAGGGTCTTACATGAAATCATAG
1 A-CAATGCCA-TATCCCAGACATGGTCTTACATGAAATCAAAG
* *
47903642 ACGATGCCAATGTCCCAGACATGGTCTTACA
1 ACAATGCC-ATATCCCAGACATGGTCTTACA
47903673 CGTAATGTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.02
42 32 0.52
43 28 0.46
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (41 bp):
ACAATGCCATATCCCAGACATGGTCTTACATGAAATCAAAG
Found at i:47905818 original size:25 final size:25
Alignment explanation
Indices: 47905778--47905828 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
47905768 GCATGACTAT
* *
47905778 AAATGTGAATTAGGCCTGATGGGCC
1 AAATGTGAATTAGGCCTAAAGGGCC
* *
47905803 AAATGTGATTTGGGCCTAAAGGGCC
1 AAATGTGAATTAGGCCTAAAGGGCC
47905828 A
1 A
47905829 TATAAATGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (25 bp):
AAATGTGAATTAGGCCTAAAGGGCC
Found at i:47905854 original size:28 final size:29
Alignment explanation
Indices: 47905803--47905860 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
47905793 CTGATGGGCC
47905803 AAATGTGATTTGGGCCTAAAGGGCCATAT
1 AAATGTGATTTGGGCCTAAAGGGCCATAT
**
47905832 AAATGTGA-TTGGGCCTAGTGGGCCATAT
1 AAATGTGATTTGGGCCTAAAGGGCCATAT
47905860 A
1 A
47905861 CAGGTATGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (29 bp):
AAATGTGATTTGGGCCTAAAGGGCCATAT
Done.