Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 151 of 325
Found at i:47909083 original size:15 final size:16
Alignment explanation
Indices: 47909063--47909092 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47909053 TGGTGCCTTG
47909063 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
47909078 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
47909093 ATCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:47910856 original size:28 final size:27
Alignment explanation
Indices: 47910825--47910887 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
47910815 AGTTACTAGA
*
47910825 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGGAAAATGACCATT
* *
47910853 ATACCCCT-AGGTGTAAAATGACCATT
1 ATACCCCTAAGATGGAAAATGACCATT
47910879 ATACCCCTA
1 ATACCCCTA
47910888 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 21 0.68
27 2 0.06
28 8 0.26
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGGAAAATGACCATT
Found at i:47911035 original size:27 final size:27
Alignment explanation
Indices: 47910995--47911106 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
47910985 AGGAAGCGTC
* *
47910995 CTGGTGGCTATGCCACAATTATTTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
*
47911022 CTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
* * *
47911049 TTGGTGGCTCTGCCACAAATATTTGTAT
1 CTGGTGGCTATGCCACAAATATCTGT-T
* * *
47911077 CTGGTGACTATGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
47911103 CTGG
1 CTGG
47911107 CAACCATGCT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.75
28 13 0.18
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAAATATCTGTT
Found at i:47911099 original size:54 final size:54
Alignment explanation
Indices: 47910996--47911102 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
47910986 GGAAGCGTCC
* * *
47910996 TGGTGGCTATGCCACAATTATTTGTTCTGGTGGCTCTGCCACAAATATCTGTTT
1 TGGTGGCTATGCCACAAATATTTGTTCTGGTGACTATGCCACAAATATCTGTTT
* * *
47911050 TGGTGGCTCTGCCACAAATATTTGTATCTGGTGACTATGTCAC-ATTATCTGTT
1 TGGTGGCTATGCCACAAATATTTGT-TCTGGTGACTATGCCACAAATATCTGTT
47911103 CTGGCAACCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 32 0.70
55 14 0.30
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (54 bp):
TGGTGGCTATGCCACAAATATTTGTTCTGGTGACTATGCCACAAATATCTGTTT
Found at i:47916078 original size:27 final size:26
Alignment explanation
Indices: 47916030--47916089 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
47916020 GCGAGGCTGC
*
47916030 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
47916057 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
47916083 CAAATAT
1 CAGATAT
47916090 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47920976 original size:56 final size:55
Alignment explanation
Indices: 47920898--47921070 Score: 283
Period size: 56 Copynumber: 3.1 Consensus size: 55
47920888 GGTCAGCTTG
* *
47920898 CAAGATTAATGTCCGGGTTGGTAGGGAATGTTGTTGGACTAAGGGTAGGCTTGAAA
1 CAAGATTAATGTTCGGG-TGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
47920954 CAAGATTAATGTTCGTGGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
1 CAAGATTAATGTTCG-GGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
* *
47921010 CAAGATTAATGTTCAGGTTGGCAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
1 CAAGATTAATGTTC-GGGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
47921066 CAAGA
1 CAAGA
47921071 AATGAAAAGA
Statistics
Matches: 111, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
56 108 0.97
57 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.35, T:0.27
Consensus pattern (55 bp):
CAAGATTAATGTTCGGGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
Found at i:47922551 original size:37 final size:37
Alignment explanation
Indices: 47922501--47922576 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
47922491 CATGATCCAC
47922501 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
1 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
47922538 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
1 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
47922575 TG
1 TG
47922577 CATAACAAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (37 bp):
TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
Found at i:47923898 original size:51 final size:49
Alignment explanation
Indices: 47923784--47923967 Score: 233
Period size: 49 Copynumber: 3.7 Consensus size: 49
47923774 ATCTAGTATG
**
47923784 CATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACA
* * * * *
47923833 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACA
* * * *
47923884 CATAGCAGCATGCACTTAGTACTATACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACA
* *
47923933 TATAGTAGCCTGCACTTAGTACTATACATGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
47923968 TCACAATAGA
Statistics
Matches: 113, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 70 0.62
50 6 0.05
51 37 0.33
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACA
Found at i:47923920 original size:100 final size:100
Alignment explanation
Indices: 47923783--47923965 Score: 294
Period size: 100 Copynumber: 1.8 Consensus size: 100
47923773 TATCTAGTAT
* * *
47923783 GCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGCAGCATGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCAC
47923848 TTAGTACTACACACGTGATCAAAGTTATCGGGTAC
66 TTAGTACTACACACGTGATCAAAGTTATCGGGTAC
* * *
47923883 GCATAGCAGCATGCACTTAGTACTATACATGCGACCAATTATCCGGTACATATAGTAGCCTGCAC
1 GCATAGCAGCATGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCAC
* *
47923948 TTAGTACTATACATGTGA
66 TTAGTACTACACACGTGA
47923966 CCTCACAATA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GCATAGCAGCATGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCAC
TTAGTACTACACACGTGATCAAAGTTATCGGGTAC
Found at i:47924244 original size:27 final size:27
Alignment explanation
Indices: 47924214--47924267 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
47924204 TCATACAACC
* *
47924214 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
47924241 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
47924268 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:47935732 original size:50 final size:50
Alignment explanation
Indices: 47935615--47935897 Score: 275
Period size: 50 Copynumber: 5.6 Consensus size: 50
47935605 TGTGAGAACG
* * *
47935615 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGTCA
* * *
47935667 -AGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGGTCG
1 CA-TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCA
* * * * * *
47935717 CACGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTCA
* ** * * **
47935768 CGTGTGTAGTACTAAGTTTAGGCTATTATGTGTATCAGAAGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCA
* * * *
47935818 CGTGTGTAGTACTAAGTGCAGGCTACTATGTGAACCAGATTGTTTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCA
*
47935868 CATGTGTAGTACTAAGTGTAGGCTACTATG
1 CATGTGTAGTACTAAGTGCAGGCTACTATG
47935898 CTTACTAGAG
Statistics
Matches: 189, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 116 0.61
51 39 0.21
52 28 0.15
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCA
Found at i:47935825 original size:101 final size:100
Alignment explanation
Indices: 47935668--47935897 Score: 280
Period size: 101 Copynumber: 2.3 Consensus size: 100
47935658 TTTAGGTTAA
* * ** * *
47935668 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGGTCGCACGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGAAGGTTAGGTCACACGTGTAGTACTAAG
* *
47935733 TGCAGGCTACTATGCGTACCTGATAGCTTCGATCAC
66 TGCAGGCTACTATGCGAACCAGATAG-TTCGATCAC
* * * **
47935769 GTGTGTAGTACTAAGTTTAGGCTATTATGTGTATCAGAAGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGAAGGTTAGGTCACACGTGTAGTACTAAG
* * * * *
47935834 TGCAGGCTACTATGTGAACCAGATTGTTTGGTCGC
66 TGCAGGCTACTATGCGAACCAGATAGTTCGATCAC
*
47935869 ATGTGTAGTACTAAGTGTAGGCTACTATG
1 GTGTGTAGTACTAAGTGTAGGCTACTATG
47935898 CTTACTAGAG
Statistics
Matches: 108, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
100 32 0.30
101 76 0.70
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGAAGGTTAGGTCACACGTGTAGTACTAAG
TGCAGGCTACTATGCGAACCAGATAGTTCGATCAC
Found at i:47935893 original size:151 final size:153
Alignment explanation
Indices: 47935617--47935898 Score: 424
Period size: 151 Copynumber: 1.9 Consensus size: 153
47935607 TGAGAACGCA
* * * *
47935617 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTTAAGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
*
47935682 GTGCAGGCTACTACGTGTACCAGATTGTTGGGTCGCACGTGTAGTACTAAGTGCAGGCTACTATG
66 GTGCAGGCTACTACGTGAACCAGATTGTTGGGTCGCACGTGTAGTACTAAGTGCAGGCTACTATG
47935747 CGTACCTGATAGCTTCGATCACG
131 CGTACCTGATAGCTTCGATCACG
** * * *
47935770 TGTGTAGTACTAAGTTTAGGCTATTATGTGTATCAGA-AG-GTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
* * * *
47935833 GTGCAGGCTACTATGTGAACCAGATTGTTTGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATG
66 GTGCAGGCTACTACGTGAACCAGATTGTTGGGTCGCACGTGTAGTACTAAGTGCAGGCTACTATG
47935898 C
131 C
47935899 TTACTAGAGA
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
151 82 0.71
152 2 0.02
153 31 0.27
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (153 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
GTGCAGGCTACTACGTGAACCAGATTGTTGGGTCGCACGTGTAGTACTAAGTGCAGGCTACTATG
CGTACCTGATAGCTTCGATCACG
Found at i:47936045 original size:18 final size:18
Alignment explanation
Indices: 47936022--47936058 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
47936012 ACTATGTAAT
47936022 GAATAAGTGAAGGTTCGG
1 GAATAAGTGAAGGTTCGG
47936040 GAATAAGTGAAGGTTCGG
1 GAATAAGTGAAGGTTCGG
47936058 G
1 G
47936059 TGTGTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.41, T:0.22
Consensus pattern (18 bp):
GAATAAGTGAAGGTTCGG
Found at i:47946935 original size:47 final size:47
Alignment explanation
Indices: 47946853--47947234 Score: 290
Period size: 47 Copynumber: 7.7 Consensus size: 47
47946843 TTAGGATTCT
* *
47946853 ATGTGATGGATGTGAAA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47946899 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
***
47946946 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCATATATGTGATA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC-TA-ATG-GCCG
* * * * *** *
47946996 AGGCCTAATGGCCGATGTGATGAA-TGTGA-A-AGTGTATATATATGTGATAA-GGCCTA
1 ATG--TGAT-G--AATGTGA--AAGTGT-ATATA-TGT-GATA-A-GGCCTAATGGCC-G
** *
47947052 ATG-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGA-ATG-------TGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
47947106 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
47947153 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
47947200 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
47947235 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 38, Indels: 59
0.73 0.10 0.16
Matches are distributed among these distances:
46 16 0.06
47 173 0.65
48 2 0.01
49 3 0.01
50 3 0.01
51 2 0.01
52 4 0.01
53 1 0.00
54 9 0.03
55 16 0.06
56 17 0.06
57 14 0.05
58 7 0.03
59 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:47946975 original size:94 final size:94
Alignment explanation
Indices: 47946853--47947234 Score: 356
Period size: 94 Copynumber: 3.9 Consensus size: 94
47946843 TTAGGATTCT
* * *
47946853 ATGTGATGGATGTGAAA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
47946917 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
** * * *
47946946 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCATATATGTGATAAGGCCTAATGGCCGA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC-TA-ATG-GCCAATG--TGAT-G--AA
* * * * * *
47947011 TGTGATGAATGTGAAAGTGTATAT-ATATGTG-ATAAGGCCTAATGGCCG
58 TGTGA--AA-GTG-TA-TATATGTGATAAG-GCCTAATG-------GCCG
*
47947059 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
47947124 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
47947153 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
47947218 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
47947235 TCCCGAAGGG
Statistics
Matches: 231, Mismatches: 34, Indels: 47
0.74 0.11 0.15
Matches are distributed among these distances:
93 16 0.07
94 97 0.42
95 2 0.01
96 3 0.01
97 3 0.01
99 3 0.01
100 7 0.03
101 9 0.04
102 9 0.04
103 2 0.01
104 2 0.01
105 9 0.04
106 9 0.04
107 7 0.03
108 3 0.01
110 3 0.01
111 3 0.01
112 2 0.01
113 42 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:47946989 original size:17 final size:17
Alignment explanation
Indices: 47946967--47947000 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47946957 GTGAAAGTGT
47946967 ATATATGTGATAAGGCC
1 ATATATGTGATAAGGCC
47946984 ATATATGTGATAAGGCC
1 ATATATGTGATAAGGCC
47947001 TAATGGCCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
ATATATGTGATAAGGCC
Found at i:47946990 original size:64 final size:65
Alignment explanation
Indices: 47946920--47947049 Score: 244
Period size: 64 Copynumber: 2.0 Consensus size: 65
47946910 GTGAAAGTGT
47946920 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
47946984 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
47947049 C
65 C
47947050 TAATGGCCGA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 46 0.72
66 18 0.28
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (65 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
Found at i:47947042 original size:49 final size:47
Alignment explanation
Indices: 47946984--47947234 Score: 412
Period size: 47 Copynumber: 5.3 Consensus size: 47
47946974 TGATAAGGCC
47946984 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
47947033 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
47947080 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
47947127 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
47947174 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
47947221 ATAAATGTGATAAG
1 ATATATGTGATAAG
47947235 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 146 0.76
49 46 0.24
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:47947054 original size:160 final size:157
Alignment explanation
Indices: 47946853--47947143 Score: 537
Period size: 160 Copynumber: 1.8 Consensus size: 157
47946843 TTAGGATTCT
*
47946853 ATGTGATGGATGTGAAATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATGTGATGAATGTGAAATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
47946918 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
66 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
47946983 CATATATGTGATAAGGCCTAATGGCCG
131 CATATATGTGATAAGGCCTAATGGCCG
*
47947010 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAA-TG--CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
47947075 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
63 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
47947140 GGCC
128 GGCC
47947144 TAATGGCCGA
Statistics
Matches: 129, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
157 16 0.12
158 2 0.02
160 111 0.86
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (157 bp):
ATGTGATGAATGTGAAATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
CATATATGTGATAAGGCCTAATGGCCG
Found at i:47947090 original size:113 final size:111
Alignment explanation
Indices: 47946872--47947096 Score: 432
Period size: 113 Copynumber: 2.0 Consensus size: 111
47946862 ATGTGAAATG
47946872 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
47946937 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
47946983 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
47947048 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
47947096 C
1 C
47947097 TAATGGCCGA
Statistics
Matches: 112, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
111 47 0.42
113 65 0.58
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.30
Consensus pattern (111 bp):
CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
Found at i:47947410 original size:37 final size:36
Alignment explanation
Indices: 47947353--47947430 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
47947343 CCGAGCTCTA
* *
47947353 AAGACCCATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCATAACTACGTGTGGAG-ATTATGTCCGGGT
*
47947389 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCC-ATAACTACGTGTGGAGATTATGTCCGGGT
47947426 AAGAC
1 AAGAC
47947431 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 7 0.19
37 29 0.78
38 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (36 bp):
AAGACCCATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:47949867 original size:32 final size:32
Alignment explanation
Indices: 47949831--47949891 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
47949821 TTCACAGCCC
*
47949831 ATAACAGAATCAATTGGGCATAA-CCCAATCCA
1 ATAACAGAA-CAAGTGGGCATAAGCCCAATCCA
*
47949863 ATAACAGAACAAGTGGGCCTAAGCCCAAT
1 ATAACAGAACAAGTGGGCATAAGCCCAAT
47949892 ATAGTGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16
Consensus pattern (32 bp):
ATAACAGAACAAGTGGGCATAAGCCCAATCCA
Found at i:47958292 original size:65 final size:65
Alignment explanation
Indices: 47958129--47958326 Score: 249
Period size: 64 Copynumber: 3.0 Consensus size: 65
47958119 GACCTAGCCG
* * * * * **
47958129 ATTTATCT-CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCATGCAACCTAG
1 ATTTATCTACGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGTATCACACATGTGACCTAG
47958192 CTAC
62 CTAC
*
47958196 ATTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCT
1 ATT-TATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCT
47958261 AC
64 AC
47958263 ATTTATCTACGTAGCTCTCTTGTCTACAT-GGATACATCCCGTATCACACATGTGACCTAGCTAC
1 ATTTATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTAC
47958327 TATATAGTAT
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
64 35 0.30
65 21 0.18
66 4 0.03
67 26 0.22
68 4 0.03
69 2 0.02
70 26 0.22
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (65 bp):
ATTTATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTAC
Found at i:47958314 original size:64 final size:67
Alignment explanation
Indices: 47958186--47958326 Score: 252
Period size: 64 Copynumber: 2.1 Consensus size: 67
47958176 CACTCATGCA
*
47958186 ACCTAGCTACATTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
1 ACCTAGCTACATTATATCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
47958251 TG
66 TG
47958253 ACCTAGCTACATT-TATCT-ACGTAGCTCTCTTGTCTACAT-GGATACATCCCGTATCACACATG
1 ACCTAGCTACATTATATCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
47958315 TG
66 TG
47958317 ACCTAGCTAC
1 ACCTAGCTAC
47958327 TATATAGTAT
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
64 35 0.48
65 21 0.29
66 4 0.05
67 13 0.18
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (67 bp):
ACCTAGCTACATTATATCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
TG
Found at i:47963264 original size:79 final size:78
Alignment explanation
Indices: 47963162--47963384 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
47963152 GCTCCTCGTT
*
47963162 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
47963227 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
47963242 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGG-CTT-AGCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
47963305 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * * *
47963319 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
47963383 GA
63 GA
47963385 CATCATTCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 31 0.25
78 27 0.22
79 47 0.38
80 19 0.15
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCA
Found at i:47963384 original size:40 final size:40
Alignment explanation
Indices: 47963162--47963384 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
47963152 GCTCCTCGTT
* *
47963162 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
47963202 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47963242 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
47963281 CAAATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
47963319 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
47963360 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47963385 CATCATTCAA
Statistics
Matches: 164, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
37 2 0.01
38 29 0.18
39 46 0.28
40 75 0.46
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47971177 original size:40 final size:39
Alignment explanation
Indices: 47971133--47971352 Score: 247
Period size: 40 Copynumber: 5.7 Consensus size: 39
47971123 GCTCCTCGTT
* *
47971133 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-AATAGTAACTCGCA
* *
47971173 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCA
*
47971213 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCA
*
47971252 CAAAT-CCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCA
* * * *
47971289 CAAATGCCTTC-GGATCTTAGTCCGG-ATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATAGTAAC-TCGCA
47971328 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47971353 CATCATTCAA
Statistics
Matches: 159, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
37 32 0.20
38 31 0.19
39 38 0.24
40 58 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCA
Found at i:47971294 original size:76 final size:76
Alignment explanation
Indices: 47971133--47971352 Score: 257
Period size: 76 Copynumber: 2.8 Consensus size: 76
47971123 GCTCCTCGTT
* * *
47971133 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGT-ACTCGCACAAAT-CCTTCGGGACTTAGCCCGG
*
47971198 ATTTAGTAACTCGCA
62 AATTAGTAACTCGCA
47971213 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATCCTTC-GG-CTTAGCCCGGAA
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTA-CTCGCACAAATCCTTCGGGACTTAGCCCGGAA
*
47971276 TTAGTATCTCGCA
64 TTAGTAACTCGCA
* * * *
47971289 CAAATGCCTTCGGATCTTAGTCCGGATT-GTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTAGT-AC-TCGCACAAATCCTTCGGGACTTAGCCCGGA
47971353 CATCATTCAA
Statistics
Matches: 124, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
75 3 0.02
76 52 0.42
77 13 0.10
78 17 0.14
79 24 0.19
80 15 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (76 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTACTCGCACAAATCCTTCGGGACTTAGCCCGGAATT
AGTAACTCGCA
Found at i:47976937 original size:71 final size:67
Alignment explanation
Indices: 47976888--47977035 Score: 215
Period size: 68 Copynumber: 2.2 Consensus size: 67
47976878 CCTTCACTTT
*
47976888 GCATCACTCATGCAACATAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGAGATACAT
1 GCATCACACATGCAACATAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATG-GATACAT
47976953 CCC
65 CCC
* ** * *
47976956 GTATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACAT
1 GCATCACACATGCAACATAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACAT-GGATACAT
47977021 CCC
65 CCC
*
47977024 GTATCACACATG
1 GCATCACACATG
47977036 TGACCTAGCT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
68 72 0.99
69 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (67 bp):
GCATCACACATGCAACATAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGATACATC
CC
Found at i:47976989 original size:68 final size:68
Alignment explanation
Indices: 47976905--47977047 Score: 268
Period size: 68 Copynumber: 2.1 Consensus size: 68
47976895 TCATGCAACA
47976905 TAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
1 TAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
47976970 ACC
66 ACC
* *
47976973 TAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTG
1 TAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
47977038 ACC
66 ACC
47977041 TAGCTAC
1 TAGCTAC
47977048 TATATAGTAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 73 1.00
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.31
Consensus pattern (68 bp):
TAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
ACC
Found at i:47977064 original size:68 final size:67
Alignment explanation
Indices: 47976905--47977081 Score: 234
Period size: 68 Copynumber: 2.6 Consensus size: 67
47976895 TCATGCAACA
* *
47976905 TAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
1 TAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
47976970 ACC
65 ACC
* * *
47976973 TAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTG
1 TAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTG
47977038 ACC
65 ACC
47977041 TAGCTACTATATAGTATCT-CGTAGC-CTTCTTGTAC-ACATGA
1 TAGCTAC-ATATA-TATCTACGTAGCTC-TCTTGT-CTACATGA
47977082 TGTGCACTCG
Statistics
Matches: 100, Mismatches: 5, Indels: 8
0.88 0.04 0.07
Matches are distributed among these distances:
67 1 0.01
68 90 0.90
69 5 0.05
70 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (67 bp):
TAGCTACATATATATCTACGTAGCTCTCTTGTCTACATGAGATACATCCCGTATCACACATGTGA
CC
Found at i:47983400 original size:27 final size:26
Alignment explanation
Indices: 47983262--47983403 Score: 92
Period size: 27 Copynumber: 5.3 Consensus size: 26
47983252 TACACATACA
* *
47983262 AGGGTATTTTGGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTT-ACAAATCG
*
47983288 AGGGATATATCGGTAATTTTACAAATCG
1 AGGG-TATTTCGGTAA-TTTACAAATCG
* * * *
47983316 GGGGTATCTCGGTAAATTTACAAGTTG
1 AGGGTATTTCGGT-AATTTACAAATCG
* ** *
47983343 -GGGTATTTTGGTAAATTTGTAAA-CT
1 AGGGTATTTCGGT-AATTTACAAATCG
*
47983368 AGGGGTATTTCGATAATTTCACAAATCG
1 A-GGGTATTTCGGTAATTT-ACAAATCG
47983396 AGGGTATT
1 AGGGTATT
47983404 AACGACCCTA
Statistics
Matches: 89, Mismatches: 19, Indels: 15
0.72 0.15 0.12
Matches are distributed among these distances:
26 27 0.30
27 52 0.58
28 10 0.11
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.37
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTACAAATCG
Found at i:47987315 original size:30 final size:30
Alignment explanation
Indices: 47987281--47987337 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
47987271 TTTACAAGCC
47987281 TAGGGG-AAAAAGTGTAATTTTGACAAAGTT
1 TAGGGGTAAAAA-TGTAATTTTGACAAAGTT
*
47987311 TAGGGGTAAAAATGTAATTTTGCCAAA
1 TAGGGGTAAAAATGTAATTTTGACAAA
47987338 ATATGGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGTAAAAATGTAATTTTGACAAAGTT
Found at i:47988299 original size:101 final size:100
Alignment explanation
Indices: 47988105--47988386 Score: 336
Period size: 101 Copynumber: 2.8 Consensus size: 100
47988095 ATTGTGAGAA
* * * *
47988105 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATAGTTTTAGGTCATGTGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-CGATA-TTTT-GGTCACGTGTGTAGT
* *
47988169 AATAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
63 ACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * *
47988207 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATATCTTTGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCGATAT-TTTGGTCACGTGTGTAGTAC
* *
47988272 TAAGTGCAGGCTACTACGTTTATCAGATGGTTAGGT
65 TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * * *
47988308 CACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGAT-TGTTAGGTCGCATGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTC-GATAT-TTTGGTCACGTGTGTAGTA
47988371 CTAAGTGCAGGCTACT
64 CTAAGTGCAGGCTACT
47988387 TTGCATACCA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
100 33 0.21
101 83 0.53
102 39 0.25
103 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.33
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCGATATTTTGGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:47988385 original size:151 final size:153
Alignment explanation
Indices: 47988109--47988386 Score: 463
Period size: 151 Copynumber: 1.8 Consensus size: 153
47988099 TGAGAACACA
* * * *
47988109 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTTAGGTCATGTGTGTAGTAATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTTTAAGATAGTGTTAGGTCACGTGTGTAGTAATAA
47988174 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
66 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
47988239 CGTACTCGATATCTTTGATCACG
131 CGTACTCGATATCTTTGATCACG
* * *
47988262 TGTGTAGTACTAAGTGCAGGCTACTACGT-TTATCAGAT-G-GTTAGGTCACGTGTTTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTT-TAAGATAGTGTTAGGTCACGTGTGTAGTAATA
47988324 AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
65 AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
47988387 TTGCATACCA
Statistics
Matches: 117, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
151 82 0.70
152 3 0.03
153 32 0.27
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (153 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTTTAAGATAGTGTTAGGTCACGTGTGTAGTAATAA
GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
CGTACTCGATATCTTTGATCACG
Found at i:47988396 original size:50 final size:50
Alignment explanation
Indices: 47988105--47988386 Score: 323
Period size: 50 Copynumber: 5.6 Consensus size: 50
47988095 ATTGTGAGAA
* * *** *
47988105 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTTAGGT
** *
47988157 CATGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
47988207 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATATCTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGAT-TGTTAGGT
* * * *
47988258 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTTTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
47988308 CACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
47988358 CGCATGTGTAGTACTAAGTGCAGGCTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACT
47988387 TTGCATACCA
Statistics
Matches: 192, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
50 118 0.61
51 40 0.21
52 34 0.18
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:47990313 original size:18 final size:20
Alignment explanation
Indices: 47990260--47990315 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
47990250 GGACACGAGT
*
47990260 GTGTCCAAAGCCACACGGGC
1 GTGTCCAGAGCCACACGGGC
47990280 GTGTCCAGAGCCACACGGGC
1 GTGTCCAGAGCCACACGGGC
*
47990300 GTGT-GAGA-CCACACGG
1 GTGTCCAGAGCCACACGG
47990316 CCTACCCAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.24
19 3 0.09
20 23 0.68
ACGTcount: A:0.23, C:0.32, G:0.34, T:0.11
Consensus pattern (20 bp):
GTGTCCAGAGCCACACGGGC
Found at i:47991197 original size:38 final size:38
Alignment explanation
Indices: 47991154--47991229 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
47991144 TTCATCCTTT
*
47991154 TTCATTTCTTTTGGCTGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
47991192 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
47991230 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:47992509 original size:40 final size:40
Alignment explanation
Indices: 47992415--47992559 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
47992405 TACTCGAATG
*
47992415 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
47992456 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
47992496 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
47992536 ATATCTGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
47992560 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:47998114 original size:68 final size:65
Alignment explanation
Indices: 47997901--47998154 Score: 239
Period size: 68 Copynumber: 3.9 Consensus size: 65
47997891 CATAATTTTG
* * *
47997901 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 GCTCTCTTGTACACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATTCTCGT
47997963 A
65 A
* * * * *
47997964 GCTCTCTTGT-CTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATA-TCC
1 GCTCTCTTGTAC-ACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATTCT
47998027 CGTA
62 CGTA
* * *
47998031 GCTCTCTTGTCCACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTACACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
47998096 GTA
63 GTA
* * * * ** *
47998099 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATAT
1 GCTCTCTTGTACACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATAT
47998155 CATCTGTATC
Statistics
Matches: 155, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 28 0.18
65 2 0.01
66 24 0.15
67 29 0.19
68 53 0.34
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:48001219 original size:91 final size:91
Alignment explanation
Indices: 48001110--48001277 Score: 293
Period size: 91 Copynumber: 1.8 Consensus size: 91
48001100 GCCCCTAAGT
* *
48001110 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCAA
48001175 CGAGTTCGGATGCCTAGTTACATTCTC
65 CGAGTTCGGATGCCTAGTTACATTCTC
*
48001202 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
48001266 GAGTTCGGATGC
66 GAGTTCGGATGC
48001278 TCTACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 25 0.34
91 42 0.58
92 6 0.08
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCTC
Found at i:48001293 original size:45 final size:47
Alignment explanation
Indices: 48001105--48001274 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 47
48001095 AACCCGCCCC
* *
48001105 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* * * *
48001151 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCATTCGCATCCA
**
48001197 T-TCTCGAACTC-GACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGT-GAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
48001242 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48001275 TGCTCTACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 55 0.52
46 43 0.41
47 2 0.02
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:48003669 original size:15 final size:15
Alignment explanation
Indices: 48003640--48003689 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
48003630 CAAAGATAAC
*
48003640 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
48003654 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
48003669 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
48003684 AAGAAA
1 AAGAAA
48003690 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:48003698 original size:15 final size:15
Alignment explanation
Indices: 48003651--48003698 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
48003641 AGAAAACCGA
48003651 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
48003665 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
48003681 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
48003696 ATA
1 ATA
48003699 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:48006791 original size:46 final size:46
Alignment explanation
Indices: 48006626--48006798 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
48006616 AACCCGCCCC
* * * * * *
48006626 TAAGTGAACTCGAAATCAAATCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * * * ** *
48006672 TAGGAGAACTCGGACTCAACTCAACGAGTTCGGATGACT-GGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
* * *
48006718 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
48006765 TAAGTGAACTCGGACTCAACTCAACGATTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48006799 TGCTCAACCA
Statistics
Matches: 96, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
45 2 0.02
46 60 0.62
47 33 0.34
48 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:48016075 original size:40 final size:40
Alignment explanation
Indices: 48016031--48016258 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
48016021 GCTACTTGCT
48016031 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
48016071 CAAATGCCTTCGGGACTTAGCCTGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
48016111 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
48016151 CAAATGCCTTCGGGACTTAGCTCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
48016191 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
48016230 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
48016259 CATCCAAATA
Statistics
Matches: 172, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.19
40 138 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:48021391 original size:28 final size:28
Alignment explanation
Indices: 48021322--48021397 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
48021312 AGTGAATAAC
*
48021322 ACAGTCTGGGCCTAAGCCCAGATTAGTA
1 ACAGTCTGGGCCTGAGCCCAGATTAGTA
48021350 ACAGTCTGGGCCTGAGCCCAGATTAGTA
1 ACAGTCTGGGCCTGAGCCCAGATTAGTA
*
48021378 ACAGTCTGGGCCTGGGCCCA
1 ACAGTCTGGGCCTGAGCCCA
48021398 TTATGGAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (28 bp):
ACAGTCTGGGCCTGAGCCCAGATTAGTA
Found at i:48021575 original size:26 final size:26
Alignment explanation
Indices: 48021546--48021627 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 26
48021536 CAACACACTG
48021546 ATATCACAGCAAAGCTGCCAGTAAT-A
1 ATATCACAGCAAAGCTGCCAGT-ATCA
* * *
48021572 ATATCGCAGCAAAGCTGTCAATATCA
1 ATATCACAGCAAAGCTGCCAGTATCA
* *
48021598 GTAACACAGCAAAGCTGCCAGTCA-CA
1 ATATCACAGCAAAGCTGCCAGT-ATCA
48021624 ATAT
1 ATAT
48021628 ATGTGGCAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
25 2 0.05
26 41 0.93
27 1 0.02
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20
Consensus pattern (26 bp):
ATATCACAGCAAAGCTGCCAGTATCA
Found at i:48025441 original size:26 final size:26
Alignment explanation
Indices: 48025411--48025480 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
48025401 GCCAATACAC
48025411 CAATATCGCAGCAAAGCTGCCAGTAAT
1 CAATATCGCAGCAAAGCTGCCAGT-AT
*
48025438 -AATATCACAGCAAAGCTGCCAGTAT
1 CAATATCGCAGCAAAGCTGCCAGTAT
* *
48025463 CAGTAACGCAGCAAAGCT
1 CAATATCGCAGCAAAGCT
48025481 ACCGGTAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.39, C:0.26, G:0.19, T:0.17
Consensus pattern (26 bp):
CAATATCGCAGCAAAGCTGCCAGTAT
Found at i:48025492 original size:26 final size:26
Alignment explanation
Indices: 48025417--48025493 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
48025407 ACACCAATAT
* * *
48025417 CGCAGCAAAGCTGCCAGTAATAATAT
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* *
48025443 CACAGCAAAGCTGCCAGTATCAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* *
48025469 CGCAGCAAAGCTACCGGTAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
48025494 TATGTGGCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:48025942 original size:17 final size:18
Alignment explanation
Indices: 48025920--48025964 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
48025910 ATCCGTGTGA
48025920 GGCCCACAAGCCCATT-G
1 GGCCCACAAGCCCATTAG
*
48025937 GGCCCACACGGCCCATTAG
1 GGCCCACA-AGCCCATTAG
48025956 GGCCCACAA
1 GGCCCACAA
48025965 CAACCTAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.33
18 7 0.29
19 9 0.38
ACGTcount: A:0.24, C:0.42, G:0.24, T:0.09
Consensus pattern (18 bp):
GGCCCACAAGCCCATTAG
Found at i:48028010 original size:16 final size:16
Alignment explanation
Indices: 48027986--48028018 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
48027976 TATGACAAAG
*
48027986 AAATGTATGCCTTAGT
1 AAATATATGCCTTAGT
48028002 AAATATATGCCTTAGT
1 AAATATATGCCTTAGT
48028018 A
1 A
48028019 CGAGTGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (16 bp):
AAATATATGCCTTAGT
Found at i:48033131 original size:42 final size:44
Alignment explanation
Indices: 48033054--48033243 Score: 223
Period size: 42 Copynumber: 4.4 Consensus size: 44
48033044 AGTCGTGGTT
* *
48033054 TTACATGT-AATCAAATATCGATGCCACTGTCCCAGATAGGGTC
1 TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
* *
48033097 TTACACG-AAATCAAATA-CGATGTCGA-TGTCCCAGACATGGTC
1 TTACACGTAAATCAAATATCGATG-CCACTGTCCCAGACAGGGTC
* *
48033139 TTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTC
1 TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
* **
48033183 TTACACG-AAATCAAATA-CGATGCTGA-TGTCCCAGACATCGTC
1 TTACACGTAAATCAAATATCGATGC-CACTGTCCCAGACAGGGTC
*
48033225 TTACACGTAAATCATATAT
1 TTACACGTAAATCAAATAT
48033244 GGAATCCTAT
Statistics
Matches: 125, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
42 52 0.42
43 47 0.38
44 26 0.21
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (44 bp):
TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
Found at i:48033165 original size:86 final size:86
Alignment explanation
Indices: 48033049--48033243 Score: 313
Period size: 86 Copynumber: 2.3 Consensus size: 86
48033039 GTCTCAGTCG
* * * * *
48033049 TGGTTTTACATGT-AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAATCAAAT
1 TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
48033113 ACGATG-TCGATGTCCCAGACA
66 ACGATGCT-GATGTCCCAGACA
48033134 TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
1 TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
48033199 ACGATGCTGATGTCCCAGACA
66 ACGATGCTGATGTCCCAGACA
*
48033220 TCGTCTTACACGTAAATCATATAT
1 TGGTCTTACACGTAAATCATATAT
48033244 GGAATCCTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
85 11 0.11
86 90 0.88
87 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (86 bp):
TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
ACGATGCTGATGTCCCAGACA
Found at i:48038206 original size:26 final size:26
Alignment explanation
Indices: 48038171--48038221 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
48038161 AATGTGAAAG
*
48038171 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
48038197 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
48038222 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:48038308 original size:26 final size:26
Alignment explanation
Indices: 48038273--48038324 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
48038263 AAATGAAAAG
*
48038273 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
48038299 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
48038325 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:48038318 original size:102 final size:102
Alignment explanation
Indices: 48038093--48038454 Score: 574
Period size: 102 Copynumber: 3.6 Consensus size: 102
48038083 TGTATATAAA
** * * *
48038093 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
48038157 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
48038196 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
48038261 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
48038298 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATA----
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
48038359 TGAAAT-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
48038396 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
48038455 ATAACGGTTA
Statistics
Matches: 247, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
97 25 0.10
98 68 0.28
102 89 0.36
103 64 0.26
104 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:48045773 original size:25 final size:25
Alignment explanation
Indices: 48045740--48045789 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
48045730 ATGTGAAAGG
*
48045740 GGGTTGCTATGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
48045765 GGGTTGCTAAGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGCTGATTCCCCGA
48045790 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (25 bp):
GGGTTGCTAAGTGCTGATTCCCCGA
Found at i:48045847 original size:101 final size:99
Alignment explanation
Indices: 48045664--48046018 Score: 531
Period size: 101 Copynumber: 3.6 Consensus size: 99
48045654 TATATAAAAG
** * *
48045664 GGGTTGCTGTGTGCTGATTCCCCGATTTA-TGGTGGTGCTATGTGCGTGATCCACCATATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT-GTGCTAAGTGCGT-ATCCACCATATCTTTG
*
48045728 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGA
64 AAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCGA
48045765 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT-GTGCTAAGTGCG-TATCCACCATATCTTTG
48045830 AAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
64 AAATGAAAAGGGGGTTGCTATGTGCTGATT-CCCCGA
48045867 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGTGCTAAGTGCGATATCCACCATATCTTTGA
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGTGCTAAGTGCG-TATCCACCATATCTTTGA
*
48045932 AAT-AAAAAGGGG--GCTATGTGCTGATTCCCCGA
65 AATGAAAAGGGGGTTGCTATGTGCTGATTCCCCGA
* *
48045964 GGGGTTGCTAAGTGCT-ATTCCCCGATTCAGTGGTGTGCTAAGTGCGGATCCACCA
1 -GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGTGCTAAGTGCGTATCCACCA
48046019 ATAACGGTAA
Statistics
Matches: 242, Mismatches: 8, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
96 8 0.03
97 35 0.14
98 29 0.12
100 8 0.03
101 84 0.35
102 77 0.32
103 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (99 bp):
GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGTGCTAAGTGCGTATCCACCATATCTTTGAA
ATGAAAAGGGGGTTGCTATGTGCTGATTCCCCGA
Found at i:48049001 original size:41 final size:43
Alignment explanation
Indices: 48048936--48049035 Score: 125
Period size: 41 Copynumber: 2.3 Consensus size: 43
48048926 GAGGCCTTTG
* * *
48048936 TGCGAGATTACTAAAATCCGGGTT-AAGTCCCAGAAGGAATT-GC
1 TGCGAG-TTATTAAATTCTGGGTTAAAGTCCC-GAAGGAATTCGC
*
48048979 TGCGAG-TATTAAATTCTGGGTTAAAGTCCCGAAGGCATTCGC
1 TGCGAGTTATTAAATTCTGGGTTAAAGTCCCGAAGGAATTCGC
48049021 TGCGAGTTATTAAAT
1 TGCGAGTTATTAAAT
48049036 CCGCGTAAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
41 21 0.42
42 15 0.30
43 14 0.28
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (43 bp):
TGCGAGTTATTAAATTCTGGGTTAAAGTCCCGAAGGAATTCGC
Found at i:48049073 original size:39 final size:41
Alignment explanation
Indices: 48048936--48049078 Score: 107
Period size: 42 Copynumber: 3.5 Consensus size: 41
48048926 GAGGCCTTTG
* * * *
48048936 TGCGAGATTACTAAAATCCGGGTTAAGTCCCAGAAGG-AATTGC
1 TGCGAG-TTATTAAAATCCGCG-TAAGTCCC-GAAGGCAGTCGC
* * * *
48048979 TGCGAG-TATTAAATTCTGGGTTAAAGTCCCGAAGGCATTCGC
1 TGCGAGTTATTAAAATCCGCG-T-AAGTCCCGAAGGCAGTCGC
*
48049021 TGCGAGTTATT-AAATCCGCGTAAGTCCC-AAGGCAGTCGT
1 TGCGAGTTATTAAAATCCGCGTAAGTCCCGAAGGCAGTCGC
*
48049060 TGCGAAG-TGTTAAAATCCG
1 TGCG-AGTTATTAAAATCCG
48049079 GCTCTCGCTC
Statistics
Matches: 84, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
39 16 0.19
40 16 0.19
41 19 0.23
42 23 0.27
43 10 0.12
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (41 bp):
TGCGAGTTATTAAAATCCGCGTAAGTCCCGAAGGCAGTCGC
Found at i:48071112 original size:39 final size:40
Alignment explanation
Indices: 48071047--48071146 Score: 154
Period size: 39 Copynumber: 2.6 Consensus size: 40
48071037 TGGATGATAA
*
48071047 CCGGGCTAAGT--CGAAGGCATTTGTGCGAGTTACT-TAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
48071084 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
*
48071124 CCGGGCTATGTCCC-AAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTG
48071147 AGTGAATAGC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
37 11 0.19
39 31 0.53
40 16 0.28
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
Found at i:48078818 original size:39 final size:40
Alignment explanation
Indices: 48078617--48078834 Score: 221
Period size: 40 Copynumber: 5.5 Consensus size: 40
48078607 TGGATGATAA
* * *
48078617 CCGGGCTAAGTCCCGAAGGCATTT-TCCGCTAGTGAATAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGT--GCGAGTTACTA-TAT
* * *
48078658 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48078698 CCGGGCCAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48078738 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48078778 CCGGTCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
48078817 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48078835 TACTTGGCTT
Statistics
Matches: 149, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
38 14 0.09
39 15 0.10
40 96 0.64
41 23 0.15
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48089164 original size:45 final size:44
Alignment explanation
Indices: 48089079--48089164 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 44
48089069 TATGTAATCT
* *
48089079 GAACTCATTGAGTTGTGCCTGAGTTCATGATATATGTGACATCC
1 GAACTCACTGAGTTGTGCCTGAGTTCATGATATATATGACATCC
* ** *
48089123 GAACTCACTGAGTTGTGGTCTGAGTTTGTGATATGTATGACA
1 GAACTCACTGAGTTGT-GCCTGAGTTCATGATATATATGACA
48089165 CATGTTTTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 15 0.43
45 20 0.57
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (44 bp):
GAACTCACTGAGTTGTGCCTGAGTTCATGATATATATGACATCC
Found at i:48102100 original size:25 final size:25
Alignment explanation
Indices: 48102053--48102100 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
48102043 TTATAGTATG
* * * *
48102053 AAAATGACTGTTTTGCCCTTAGGTA
1 AAAATGACTATTATACCCCTAGGTA
48102078 AAAATGACTATTATACCCCTAGG
1 AAAATGACTATTATACCCCTAGG
48102101 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
AAAATGACTATTATACCCCTAGGTA
Found at i:48102162 original size:11 final size:11
Alignment explanation
Indices: 48102148--48102203 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
48102138 CAATATTGAT
48102148 ATGATATGCAC
1 ATGATATGCAC
*
48102159 ATGATATG--T
1 ATGATATGCAC
48102168 ATGATATGCAC
1 ATGATATGCAC
*
48102179 ATGATATG--T
1 ATGATATGCAC
48102188 ATGATATGCAC
1 ATGATATGCAC
48102199 ATGAT
1 ATGAT
48102204 GTGTATGACA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:48102225 original size:20 final size:20
Alignment explanation
Indices: 48102147--48102223 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
48102137 ACAATATTGA
48102147 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
48102167 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
48102187 TATGATATGCACATGATGTG
1 TATGATATGCACATGATATG
*
48102207 TATGACATGCACATGAT
1 TATGATATGCACATGAT
48102224 GTATTCATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:48102283 original size:26 final size:26
Alignment explanation
Indices: 48102254--48102338 Score: 88
Period size: 25 Copynumber: 3.3 Consensus size: 26
48102244 TTGGGTATTT
48102254 GCCCCAGTTTATTGAAAAGGGCTTAG
1 GCCCCAGTTTATTGAAAAGGGCTTAG
** **
48102280 GCCCCAGTTTACCG-AAAGGGCTTTT
1 GCCCCAGTTTATTGAAAAGGGCTTAG
48102305 GCCCCAG-TTATT-AAAAGAGGC-TAG
1 GCCCCAGTTTATTGAAAAG-GGCTTAG
48102329 GCCTCCAGTT
1 GCC-CCAGTT
48102339 ATATGATAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
24 11 0.23
25 23 0.49
26 13 0.28
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCCCCAGTTTATTGAAAAGGGCTTAG
Found at i:48108342 original size:75 final size:74
Alignment explanation
Indices: 48108261--48108409 Score: 192
Period size: 75 Copynumber: 2.0 Consensus size: 74
48108251 GAAAAAGAAT
* ** * *
48108261 TATTTTTTTATAATTTTATTATTTTTTATTACATTTAAATTATTTGTGATTTAATTGT-TACTTA
1 TATTTTTTAATAATTTTAAAATTTATTATTACATTTAAATTATTTGTGA-TTAATT-TCTACTCA
*
48108325 ATGTTCAAATA
64 ATGTCCAAATA
* * *
48108336 TATTTTTTAATAATTTTAAAATTTATTGTTATATTTTAATTATTTGTGATTAATTTCTACTCAAT
1 TATTTTTTAATAATTTTAAAATTTATTATTACATTTAAATTATTTGTGATTAATTTCTACTCAAT
48108401 GTCCAAATA
66 GTCCAAATA
48108410 AATTCATTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
73 1 0.02
74 21 0.33
75 42 0.66
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (74 bp):
TATTTTTTAATAATTTTAAAATTTATTATTACATTTAAATTATTTGTGATTAATTTCTACTCAAT
GTCCAAATA
Found at i:48113750 original size:27 final size:27
Alignment explanation
Indices: 48113720--48113859 Score: 147
Period size: 27 Copynumber: 5.1 Consensus size: 27
48113710 AAATGTCCTT
* *
48113720 GATTTGTAGAATTACCGCTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTC
*
48113747 GATTTATAGAATTACCATTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTC
*
48113774 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTC
* * * * *
48113801 TATTTACAAAATTACCATTTTACCTTC
1 GATTTATAGAATTACCGTTTTACCCTC
* * *
48113828 -AGTTTACAAAATTATTCGTTTTACCCTC
1 GA-TTTATAGAATTA-CCGTTTTACCCTC
48113856 GATT
1 GATT
48113860 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.86
28 12 0.12
29 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
GATTTATAGAATTACCGTTTTACCCTC
Found at i:48113778 original size:54 final size:54
Alignment explanation
Indices: 48113727--48113859 Score: 169
Period size: 54 Copynumber: 2.4 Consensus size: 54
48113717 CTTGATTTGT
* *
48113727 AGAATTACCGCTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCGCTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTAC
* * *
48113781 AGAATTACCGTTTTACCCTCTATTTACAAAATTACCATTTTACCTTC-AGTTTAC
1 AGAATTACCGCTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA-TTTAC
* * *
48113835 AAAATTATTCGTTTTACCCTCGATT
1 AGAATTA-CCGCTTTACCCTCGATT
48113860 GTGAAATTAC
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 53 0.77
55 15 0.22
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (54 bp):
AGAATTACCGCTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTAC
Found at i:48113881 original size:27 final size:26
Alignment explanation
Indices: 48113851--48114041 Score: 138
Period size: 27 Copynumber: 7.1 Consensus size: 26
48113841 ATTCGTTTTA
* **
48113851 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
48113878 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
48113905 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
48113932 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * *
48113959 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
48113985 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
48114013 CCCTGATT-TACAAAATTA-CAGAAATAC
1 CCCTGATTGT--AAAATTACCA-AAATAC
48114040 CC
1 CC
48114042 TTGACTTTCT
Statistics
Matches: 137, Mismatches: 18, Indels: 18
0.79 0.10 0.10
Matches are distributed among these distances:
25 2 0.01
26 9 0.07
27 119 0.87
28 6 0.04
29 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:48113921 original size:54 final size:52
Alignment explanation
Indices: 48113858--48114041 Score: 188
Period size: 54 Copynumber: 3.4 Consensus size: 52
48113848 TTACCCTCGA
* * ** *
48113858 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTGTTTG-TAAAATTACCAAAATACCCCT-GT
* * *
48113912 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCGAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCT-GT
* **
48113966 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCGAAATACCC-CTGTTTGTAAAATTACCAAAATACCCCTG-T
** *
48114020 TTACAAAATTACAGAAATACCC
1 TTGTAAAATTACCGAAATACCC
48114042 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 103 0.95
55 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (52 bp):
TTGTAAAATTACCGAAATACCCCTGTTTGTAAAATTACCAAAATACCCCTGT
Found at i:48113948 original size:81 final size:81
Alignment explanation
Indices: 48113858--48114041 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
48113848 TTACCCTCGA
* * *
48113858 TTGTGAAATTACTGAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCC-CTAGTTTGTAAAA
1 TTGTAAAATTACAGAAATACCCCTGGTAGG-TGA-AATTACCAAAATACCCTC-AATTTGTAAAA
48113920 TTACCAAAATACCCCT-AGT
63 TTACCAAAATACCCCTGA-T
* * ** *
48113939 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTA
1 TTGTAAAATTACAGAAATACCCCTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
48114004 CCAAAATACCCCTGAT
66 CCAAAATACCCCTGAT
**
48114020 TTACAAAATTACAGAAATACCC
1 TTGTAAAATTACAGAAATACCC
48114042 TTGACTTTCT
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
81 82 0.93
82 6 0.07
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (81 bp):
TTGTAAAATTACAGAAATACCCCTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTGAT
Found at i:48114092 original size:27 final size:27
Alignment explanation
Indices: 48113916--48114104 Score: 96
Period size: 27 Copynumber: 6.9 Consensus size: 27
48113906 CCTAGTTTGT
** * * **
48113916 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
* **
48113943 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* * *** **
48113970 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
** * *
48113997 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
48114024 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
* *
48114051 TAAAAACTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
48114080 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
48114105 GTAGATTTAC
Statistics
Matches: 131, Mismatches: 23, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 8 0.06
29 18 0.14
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:48114188 original size:27 final size:27
Alignment explanation
Indices: 48114158--48114218 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
48114148 ACCCTTAATA
48114158 GGTAAAAAGACCGTAA-AGCCCATGTAG
1 GGTAAAAAGACCGTAATA-CCCATGTAG
** * *
48114185 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCATGTAG
48114212 GGTAAAA
1 GGTAAAA
48114219 TAACGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCATGTAG
Found at i:48115087 original size:25 final size:25
Alignment explanation
Indices: 48115032--48115101 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
48115022 AGGAAGTGCT
*
48115032 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACAG
*
48115057 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTCTGCCCCAGTTTA-CAG
* *
48115083 -GAAGGGCTCTGCCCTAGTT
1 AAAAGGGCTCTGCCCCAGTT
48115102 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 37 0.95
26 2 0.05
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACAG
Found at i:48116313 original size:68 final size:68
Alignment explanation
Indices: 48116204--48116331 Score: 240
Period size: 68 Copynumber: 1.9 Consensus size: 68
48116194 TATACATTAC
48116204 CATACCAATGCCATATCTCAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCCTACGT
1 CATACCAATGCCATATCTCAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCCTACGT
48116269 TAT
66 TAT
48116272 CATACCAATGCCATATC-CTAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCC
1 CATACCAATGCCATATCTC-AGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCC
48116332 CAGCTATGGT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
67 1 0.02
68 58 0.98
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (68 bp):
CATACCAATGCCATATCTCAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCCTACGT
TAT
Found at i:48116376 original size:42 final size:41
Alignment explanation
Indices: 48116279--48116399 Score: 152
Period size: 42 Copynumber: 2.9 Consensus size: 41
48116269 TATCATACCA
* * * *
48116279 ATGCCATATCCTAGATATGGTCTTACATGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAATCTCACATCG
* * *
48116320 ATGCCAATAGCCCAGCTATGGTCTTATACGAAGTCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAA-TCTCACATCG
48116363 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AATCTCA
48116400 AAAAACCCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 5 0.07
42 46 0.69
43 16 0.24
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCACATCG
Found at i:48122800 original size:27 final size:27
Alignment explanation
Indices: 48122671--48123002 Score: 209
Period size: 27 Copynumber: 12.3 Consensus size: 27
48122661 TACCCTATAG
* * * *
48122671 GGGTATGTCAGTCATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CGA
* * *
48122698 GGGTATTTCAATAATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CGA
*
48122725 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
48122752 GGGTATTTCTA-TAATTTTACAAATCGA
1 GGGTATTTC-AGTAATTTTACAAATCGA
*
48122779 GGGTATTTCAGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
48122806 GGGTGGTTCGGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
48122833 GGGTATTTTAGTAATTTTAC-AATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * * *
48122859 CGGTATTT-TGATAACTTTAGAAATTGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* * *
48122886 GGGTATTTTAGTAATTTTAAAAAAT-AA
1 GGGTATTTCAGTAATTTT-ACAAATCGA
* * ** *
48122913 GGATATTTC-GATAATTTCACAAGCCGG
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
48122940 GGGTATTTCGGTAAATTTT-CAAATC-A
1 GGGTATTTCAGT-AATTTTACAAATCGA
* * *
48122966 GGGGTACTTT-GGTAATTCTACAAA-CCA
1 -GGGTA-TTTCAGTAATTTTACAAATCGA
48122993 GGGGTATTTC
1 -GGGTATTTC
48123003 GGTACAAATC
Statistics
Matches: 253, Mismatches: 36, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
25 1 0.00
26 34 0.13
27 200 0.79
28 18 0.07
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:48122808 original size:54 final size:54
Alignment explanation
Indices: 48122697--48122963 Score: 261
Period size: 54 Copynumber: 5.0 Consensus size: 54
48122687 TTACACTACA
* * * * *
48122697 AGGGTATTTCAATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCAGTAATTTTACAAATTG
*
48122751 AGGGTATTTCTATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
** * * *
48122805 AGGGTGGTTCGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTAC-AATTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
* * * * * * * * *
48122858 ACGGTATTTTGATAACTTTAGAAATTGAGGGTATTTTAGTAATTTTAAAAAATA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
* * ** * *
48122912 AGGATATTTCGATAATTTCACAAGCCGGGGGTATTTCGGTAAATTTT-CAAAT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGT-AATTTTACAAAT
48122964 CAGGGGTACT
Statistics
Matches: 175, Mismatches: 35, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
53 45 0.26
54 122 0.70
55 8 0.05
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
Found at i:48122928 original size:80 final size:80
Alignment explanation
Indices: 48122724--48122934 Score: 212
Period size: 80 Copynumber: 2.6 Consensus size: 80
48122714 TTACACTACA
* * *
48122724 AGGGTATTTCAATAATTTT-ACAAATCGAGGGTATTTCTATAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTCAGTAATTTTAAAAAAT-GAGGGTATTTCTATAATTTTAC-AATCGACGGTATTTC
*
48122788 AGTAATTTTACAAATTG
64 AGTAACTTTACAAATTG
** * * * * *
48122805 AGGGTGGTTCGGTAATTTTACAAATTGAGGGTATTT-TAGTAATTTTACAATTGACGGTATTT-T
1 AGGGTATTTCAGTAATTTTAAAAAATGAGGGTATTTCTA-TAATTTTACAATCGACGGTATTTCA
*
48122868 GATAACTTTAGAAATTG
65 G-TAACTTTACAAATTG
* * * * *
48122885 AGGGTATTTTAGTAATTTTAAAAAATAAGGATATTTCGATAATTTCACAA
1 AGGGTATTTCAGTAATTTTAAAAAATGAGGGTATTTCTATAATTTTACAA
48122935 GCCGGGGGTA
Statistics
Matches: 104, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
79 1 0.01
80 65 0.62
81 35 0.34
82 3 0.03
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTAAAAAATGAGGGTATTTCTATAATTTTACAATCGACGGTATTTCAG
TAACTTTACAAATTG
Found at i:48122944 original size:107 final size:108
Alignment explanation
Indices: 48122724--48122948 Score: 247
Period size: 107 Copynumber: 2.1 Consensus size: 108
48122714 TTACACTACA
* *
48122724 AGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCTATAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCAATAATTTTACAAATCGACGGTATTTCTATAACTTTACAAATCGAGGGTATTTCA
* * * * * * * **
48122789 GTAATTTTACAAATTGAGGGTGGTTCGGTAATTTTACAAATTG
66 GTAATTTTAAAAAATAAGGATAGTTCGATAATTTCACAAACCG
* * * * * *
48122832 AGGGTATTTTAGTAATTTTAC-AATTGACGGTATTT-TGATAACTTTAGAAATTGAGGGTATTTT
1 AGGGTATTTCAATAATTTTACAAATCGACGGTATTTCT-ATAACTTTACAAATCGAGGGTATTTC
* *
48122895 AGTAATTTTAAAAAATAAGGATATTTCGATAATTTCACAAGCCG
65 AGTAATTTTAAAAAATAAGGATAGTTCGATAATTTCACAAACCG
*
48122939 GGGGTATTTC
1 AGGGTATTTC
48122949 GGTAAATTTT
Statistics
Matches: 95, Mismatches: 21, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
106 1 0.01
107 75 0.79
108 19 0.20
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (108 bp):
AGGGTATTTCAATAATTTTACAAATCGACGGTATTTCTATAACTTTACAAATCGAGGGTATTTCA
GTAATTTTAAAAAATAAGGATAGTTCGATAATTTCACAAACCG
Found at i:48123008 original size:21 final size:21
Alignment explanation
Indices: 48122984--48123027 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
48122974 TTGGTAATTC
48122984 TACAAACC-AGGGGTATTTCGG
1 TACAAACCGA-GGGTATTTCGG
* *
48123005 TACAAATCGAGGGTATTTTGG
1 TACAAACCGAGGGTATTTCGG
48123026 TA
1 TA
48123028 ATTTCTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (21 bp):
TACAAACCGAGGGTATTTCGG
Found at i:48129625 original size:26 final size:27
Alignment explanation
Indices: 48129562--48129703 Score: 137
Period size: 27 Copynumber: 5.3 Consensus size: 27
48129552 CAAAATAGTC
* * * ** *
48129562 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATTTCAATA
48129589 ATTTTACACTACAAGGGTATTTCAAT-
1 ATTTTACACTACAAGGGTATTTCAATA
48129615 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAATA
* * *
48129642 ATTTTACA-AATCGAGGGTATTTCTATA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * *
48129669 ATTTTACA-AATCGAGGGTATTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCAATA
48129696 ATTTTACA
1 ATTTTACA
48129704 AATTGAGGGT
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 27 0.26
27 76 0.74
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAATA
Found at i:48129646 original size:53 final size:54
Alignment explanation
Indices: 48129562--48129868 Score: 198
Period size: 54 Copynumber: 5.7 Consensus size: 54
48129552 CAAAATAGTC
* * * * * *
48129562 ATTTTACCCTACAGGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTCAAT-
1 ATTTTACACTACAAGGGTATTTCAGTAATTTTACAAAT-CAAGGGTATTTCAATA
* * *
48129615 ATTTTACACTACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCTATA
1 ATTTTACACTACAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATA
* * ** ** **
48129669 ATTTTACA-AATCGAGGGTATTTCAGTAATTTTACAAATTGAGGGTGGTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATA
* ** * * **
48129723 ATTTTACA-AATTGAGGGTATTTCAGTAATTTTACAATTGATA--GTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCAGTAATTTTACAAATCA-AGGGTATTTCAATA
* * * * **
48129776 ATTTTACGAAT-CAAGGGTATTTCAATAATTTTGCAAATCGAGGGTATTTCACGA
1 ATTTTAC-ACTACAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATA
* * * *
48129830 ATTTTACA-AATCAAGGATATTTCGGTAATTTTTCAAATC
1 ATTTTACACTA-CAAGGGTATTTCAGTAATTTTACAAATC
48129869 GGGGGTACTC
Statistics
Matches: 205, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
52 1 0.00
53 81 0.40
54 122 0.60
55 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (54 bp):
ATTTTACACTACAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATA
Found at i:48129658 original size:27 final size:27
Alignment explanation
Indices: 48129602--48129905 Score: 323
Period size: 27 Copynumber: 11.4 Consensus size: 27
48129592 TTACACTACA
* * *
48129602 AGGGTATTTCAAT-ATTTTAC-ACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
*
48129628 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
48129655 AGGGTATTTCTA-TAATTTTACAAATCG
1 AGGGTATTTC-AGTAATTTTACAAATCG
*
48129682 AGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
48129709 AGGGTGGTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
48129736 AGGGTATTTCAGTAATTTTAC-AATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * *
48129762 ATAGTATTTCGGTAATTTTACGAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
48129789 AGGGTATTTCAATAATTTTGCAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
48129816 AGGGTATTTCACG-AATTTTACAAATCA
1 AGGGTATTTCA-GTAATTTTACAAATCG
* * *
48129843 AGGATATTTCGGTAATTTTTCAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
48129870 GGGGTA-CTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
48129896 AGGGTATTTC
1 AGGGTATTTC
48129906 GGTACAAACC
Statistics
Matches: 236, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
26 61 0.26
27 172 0.73
28 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:48129769 original size:107 final size:108
Alignment explanation
Indices: 48129626--48129905 Score: 341
Period size: 107 Copynumber: 2.6 Consensus size: 108
48129616 TTTTACACTA
* **
48129626 CAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCTATAATTTTACAAATCGAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
* * * *
48129691 CAGTAATTTTACAAATTGAGGGTGGTTC-GGTAATTTTACAAAT
66 CAATAATTTTACAAATCGAGGGTAGTTCACG-AATTTTACAAAT
** * ** * *
48129734 TGAGGGTATTTCAGTAATTTTAC-AATTGATAGTATTTCGGTAATTTTACGAATCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
* *
48129798 CAATAATTTTGCAAATCGAGGGTATTTCACGAATTTTACAAAT
66 CAATAATTTTACAAATCGAGGGTAGTTCACGAATTTTACAAAT
* * * * *
48129841 CAAGGATATTTCGGTAATTTTTCAAATCGGGGGTA-CTCGGTAATTTTACAAATCGAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
48129905 C
66 C
48129906 GGTACAAACC
Statistics
Matches: 142, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
107 114 0.80
108 28 0.20
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (108 bp):
CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
CAATAATTTTACAAATCGAGGGTAGTTCACGAATTTTACAAAT
Found at i:48130283 original size:28 final size:28
Alignment explanation
Indices: 48130249--48130340 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
48130239 TGGCCCGTTT
* * *
48130249 AGGCCCAATCTCTTTCACATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
48130277 GGGCCCAATCACATTCATATGTCGCATT
1 AGGCCCAATCACATTCATATGGCCCATC
*
48130305 AGGCCCAATCACATTCATATGGTCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
48130333 AGGCCCAA
1 AGGCCCAA
48130341 CTACTTCCCA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:48134084 original size:47 final size:47
Alignment explanation
Indices: 48134030--48134563 Score: 708
Period size: 47 Copynumber: 11.1 Consensus size: 47
48134020 TTAGGATTTT
* *
48134030 ATGTGATGGATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
48134077 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGTCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
48134128 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
48134175 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
48134222 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
48134273 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** * *
48134320 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
48134373 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
48134420 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
48134467 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** ** * *
48134514 ATGTGATGAATGTGAACATGAATACATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
48134561 ATG
1 ATG
48134564 CAAAACGTGT
Statistics
Matches: 435, Mismatches: 38, Indels: 28
0.87 0.08 0.06
Matches are distributed among these distances:
47 303 0.70
48 1 0.00
49 4 0.01
51 86 0.20
52 1 0.00
53 40 0.09
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:48134180 original size:145 final size:145
Alignment explanation
Indices: 48134030--48134563 Score: 769
Period size: 145 Copynumber: 3.7 Consensus size: 145
48134020 TTAGGATTTT
* *
48134030 ATGTGATGGATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
48134095 CGTATATATATGTGTGATAAGGCCGAATGTCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
48134160 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* * * *
48134175 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
48134240 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
48134305 AAGACCGAATGGCCA
131 AAGGCCGAATGGCCA
* * *
48134320 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGACCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
***
48134385 TGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
60 TGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
48134446 TGTGATAAGGCCGAATGGCCA
125 TGTGATAAGGCCGAATGGCCA
* * * *
48134467 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* * *
48134532 TG-A-ATACATGTG-G-TAAGGCCGAATGGCTAATG
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATG
48134564 CAAAACGTGT
Statistics
Matches: 353, Mismatches: 27, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
141 58 0.16
142 1 0.00
143 5 0.01
144 1 0.00
145 155 0.44
146 2 0.01
147 89 0.25
149 1 0.00
151 41 0.12
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (145 bp):
ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:48134400 original size:23 final size:23
Alignment explanation
Indices: 48134373--48134447 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
48134363 CGAATGACCA
48134373 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
48134396 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
48134420 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
48134443 ATGTG
1 ATGTG
48134448 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:48134626 original size:46 final size:46
Alignment explanation
Indices: 48134539--48134627 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 46
48134529 ACATGAATAC
* * * *
48134539 ATGTGGTAAGGCCGAATGGCTAATGCAAAACGTGTATGAGATGGAT
1 ATGTGGTAAAGCCAAATGGCTAATGCAAAACATGTACGAGATGGAT
** * *
48134585 ATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATGTGGTAAAGCCAAATGGCTAATGCAAAACATGTACGAGATG
48134628 TGTATATATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 35 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATGTGGTAAAGCCAAATGGCTAATGCAAAACATGTACGAGATGGAT
Found at i:48135030 original size:37 final size:37
Alignment explanation
Indices: 48134774--48135029 Score: 440
Period size: 37 Copynumber: 6.9 Consensus size: 37
48134764 GGAAATATAT
48134774 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48134811 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
48134848 TCTGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48134885 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48134922 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48134959 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
48134996 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
48135030 TCGTCTGAGC
Statistics
Matches: 207, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 207 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48141538 original size:39 final size:39
Alignment explanation
Indices: 48141495--48141662 Score: 282
Period size: 39 Copynumber: 4.3 Consensus size: 39
48141485 GGTCTTTAAC
** *
48141495 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
48141534 CCGGATATATTTCTAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
48141573 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
48141612 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
48141651 CTGGATATTTTT
1 CCGGATATTTTT
48141663 AATCTCATAC
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 121 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:48143493 original size:40 final size:40
Alignment explanation
Indices: 48143446--48143619 Score: 262
Period size: 40 Copynumber: 4.4 Consensus size: 40
48143436 TGATAACCGT
*
48143446 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
48143486 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
48143526 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* * *
48143566 GCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
* *
48143605 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
48143620 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.12
40 110 0.88
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:48153847 original size:132 final size:132
Alignment explanation
Indices: 48153610--48153872 Score: 429
Period size: 132 Copynumber: 2.0 Consensus size: 132
48153600 GTGCCCAGCC
** * *
48153610 CGTAGGCTAACATCCTCTTAGAACATACCAAGTGTTGGAATTCAGTAGAATCAGTGGATAGTAAC
1 CGTAGGCTAACATCCTCCGAGAACACACCAAGTGTTGGAATCCAGTAGAATCAGTGGATAGTAAC
48153675 AAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCAT
66 AAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCAT
48153740 GT
131 GT
* * * *
48153742 CGTAGGCTAACATCCTCCCGA-AACACACCAAGTGTTGGACTCCGGTATAATCAGTGGATAGTAC
1 CGTAGGCTAACATCCT-CCGAGAACACACCAAGTGTTGGAATCCAGTAGAATCAGTGGATAGTAA
*
48153806 CAAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAGCGTGCAATATAACCTATTGGCA
65 CAAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCA
48153871 TG
130 TG
48153873 CCAATTGTAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
132 119 0.98
133 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (132 bp):
CGTAGGCTAACATCCTCCGAGAACACACCAAGTGTTGGAATCCAGTAGAATCAGTGGATAGTAAC
AAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCAT
GT
Found at i:48169709 original size:15 final size:15
Alignment explanation
Indices: 48169689--48169719 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48169679 CTCCTCATAA
*
48169689 TTCATACACATGCAT
1 TTCATACACAAGCAT
48169704 TTCATACACAAGCAT
1 TTCATACACAAGCAT
48169719 T
1 T
48169720 CAATCAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (15 bp):
TTCATACACAAGCAT
Found at i:48173654 original size:47 final size:47
Alignment explanation
Indices: 48173600--48173930 Score: 402
Period size: 47 Copynumber: 7.1 Consensus size: 47
48173590 TTAGGATTTT
** * * * *
48173600 ATGTGATGAATGTGAATGTGTATATATGAGATATGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48173647 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* *
48173698 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** *
48173745 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48173792 ATGTGATGAA--T---CATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48173834 ATGTGATGAATGTGAACATGCGTATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
48173881 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
48173928 ATG
1 ATG
48173931 CGAAATCTGT
Statistics
Matches: 255, Mismatches: 20, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
42 39 0.15
44 1 0.00
45 1 0.00
47 167 0.65
49 11 0.04
51 36 0.14
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:48173749 original size:89 final size:91
Alignment explanation
Indices: 48173673--48173930 Score: 337
Period size: 89 Copynumber: 2.8 Consensus size: 91
48173663 CCTGTATATA
*
48173673 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
48173738 ATGGCCAATGTGATGAATGTGAACATGCG
66 ATGGCCAATGTGA-GAATGT-AACAT-CG
* *
48173767 TACGTGTGATAAGGCCGAATGACCAATGTGATGAA--T---CATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
48173827 ATGGCCAATGTGATGAATGTGAACATGCG
66 ATGGCCAATGTGA-GAATGT-AACAT-CG
* * ** * *
48173856 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
*
48173921 ATGGCTAATG
66 ATGGCCAATG
48173931 CGAAATCTGT
Statistics
Matches: 147, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
89 84 0.57
91 1 0.01
92 1 0.01
94 61 0.41
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (91 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
ATGGCCAATGTGAGAATGTAACATCG
Found at i:48173852 original size:136 final size:136
Alignment explanation
Indices: 48173673--48173923 Score: 430
Period size: 136 Copynumber: 1.8 Consensus size: 136
48173663 CCTGTATATA
* *
48173673 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGAGATAAGGCCGA
* *
48173738 ATGGCCAATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGACCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGACCAATGTGATGAAT
48173803 CATGCG
131 CATGCG
*
48173809 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGAGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGAGATAAGGCCGA
* * *
48173874 ATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATG
66 ATGGCCAATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATG
48173924 GCTAATGCGA
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 107 1.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (136 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGAGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGACCAATGTGATGAAT
CATGCG
Found at i:48174040 original size:46 final size:46
Alignment explanation
Indices: 48173904--48174040 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
48173894 GAACATGTAT
* * *
48173904 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATCTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* **
48173950 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
48173996 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
48174041 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:48179478 original size:21 final size:20
Alignment explanation
Indices: 48179454--48179492 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
48179444 GGACTAATCT
*
48179454 GAAACAAAACAGAAAAATATG
1 GAAAAAAAAC-GAAAAATATG
*
48179475 GAAAAAAAACTAAAAATA
1 GAAAAAAAACGAAAAATA
48179493 GGGGTCATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (20 bp):
GAAAAAAAACGAAAAATATG
Found at i:48185813 original size:28 final size:28
Alignment explanation
Indices: 48185740--48185814 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
48185730 TGGCCCCTTT
*
48185740 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
48185768 AGGCCTAATCACTTTCATATGGCCTATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
48185796 AGGCCCAATCACACTCATA
1 AGGCCCAATCACATTCATA
48185815 GTCATGCAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:48191144 original size:29 final size:29
Alignment explanation
Indices: 48191058--48191164 Score: 110
Period size: 29 Copynumber: 3.7 Consensus size: 29
48191048 TACATACATG
48191058 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCTTATT
* * * *
48191086 CAAATGGCCCATTTGGCCCAGTT-TATATT
1 CATATGGCCCACTAGGCCCAATTCT-TATT
* *
48191115 CTTATGGCCCACTAGGCCCAATTCTCATT
1 CATATGGCCCACTAGGCCCAATTCTTATT
* * *
48191144 CATCTAGCCCATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
48191165 ATCATATTAT
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
28 18 0.29
29 43 0.69
30 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCTTATT
Found at i:48191172 original size:58 final size:57
Alignment explanation
Indices: 48191060--48191172 Score: 145
Period size: 58 Copynumber: 2.0 Consensus size: 57
48191050 CATACATGCA
* * * ** *
48191060 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTTATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATAGCCCATTAGGCCCAAATCATATTCT
**
48191117 TATGGCCCACTAGGCCCAATTCTCATTCATCTAGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCTCATTCAAATAGCCCATTAGGCCCAAATCATATT
48191173 ATATTCATGC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATAGCCCATTAGGCCCAAATCATATTCT
Found at i:48191278 original size:19 final size:18
Alignment explanation
Indices: 48191245--48191281 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
48191235 TGGGCCCAAC
48191245 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
48191263 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
48191282 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:48191290 original size:19 final size:19
Alignment explanation
Indices: 48191254--48191290 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
48191244 CAGCCCATCA
*
48191254 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
48191273 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
48191291 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:48199843 original size:16 final size:16
Alignment explanation
Indices: 48199822--48199854 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
48199812 AATAAGAAGA
48199822 AGAGAAGAAGGAATCG
1 AGAGAAGAAGGAATCG
48199838 AGAGAAGAAGGAATCG
1 AGAGAAGAAGGAATCG
48199854 A
1 A
48199855 CTAAAACCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.36, T:0.06
Consensus pattern (16 bp):
AGAGAAGAAGGAATCG
Found at i:48218168 original size:30 final size:31
Alignment explanation
Indices: 48218057--48218170 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
48218047 TTAGTCTTGA
* *
48218057 CATAT-ACTGGGCCGAGGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
48218087 TATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
48218118 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
48218149 CATTTCAC-GGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
48218171 ATTGCAAACG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
30 17 0.22
31 59 0.78
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:48218442 original size:25 final size:26
Alignment explanation
Indices: 48218391--48218460 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 26
48218381 CTCTTTTAAT
*
48218391 AACTGGGGCAAAGCTC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCTGATA
* *
48218416 AACTGGGGTAAAGCCCTTTTC-GGTA
1 AACTGGGGCAAAGCCCTTTTCTGATA
* *
48218441 AACTGAGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
48218461 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTCTGATA
Found at i:48220990 original size:47 final size:47
Alignment explanation
Indices: 48220929--48221096 Score: 300
Period size: 47 Copynumber: 3.6 Consensus size: 47
48220919 CAGCCAAGAC
* *
48220929 AGTGTATATGTGTGATAAGACCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
48220976 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
48221023 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
48221070 AGTGTATATGTGTGATAAGGCCTAATG
1 AGTGTATATATGTGATAAGGCCTAATG
48221097 AATGTGAAAG
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:48221037 original size:94 final size:94
Alignment explanation
Indices: 48220929--48221358 Score: 623
Period size: 94 Copynumber: 4.7 Consensus size: 94
48220919 CAGCCAAGAC
* *
48220929 AGTGTATATGTGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48220994 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAATAGCCGATGTGATGAATGTGAA
*
48221023 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48221088 GGCC---T-----A----ATGAATGTGAA
66 GGCCTAATAGCCGATGTGATGAATGTGAA
* * *
48221105 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48221170 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAATAGCCGATGTGATGAATGTGAA
*
48221199 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
48221264 GGCCTAATGGCCGATGTGAGGAATGTGAA
66 GGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
48221293 AGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48221358 G
66 G
48221359 TCCCGAAGGG
Statistics
Matches: 304, Mismatches: 20, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
82 78 0.26
85 1 0.00
86 1 0.00
90 1 0.00
91 1 0.00
94 222 0.73
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:48221105 original size:35 final size:35
Alignment explanation
Indices: 48221059--48221130 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
48221049 GGCCGATGTG
48221059 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
1 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
48221094 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
1 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
48221129 AT
1 AT
48221131 AGCCGATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.32
Consensus pattern (35 bp):
ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
Found at i:48221146 original size:47 final size:47
Alignment explanation
Indices: 48221094--48221358 Score: 404
Period size: 47 Copynumber: 5.6 Consensus size: 47
48221084 ATAAGGCCTA
* *
48221094 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48221141 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
48221188 ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48221235 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
48221282 AGGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
48221329 ATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
48221359 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 203 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:48221149 original size:82 final size:82
Alignment explanation
Indices: 48221012--48221272 Score: 378
Period size: 82 Copynumber: 3.0 Consensus size: 82
48221002 AGCCGATGTG
48221012 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
48221077 ATGTGTGATAAGGCCTA
66 ATGTGTGATAAGGCCTA
* *
48221094 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
48221159 ATGTGTGATAAGGCCTAATAGCCGA
66 ATGTGTGATAAGGCC---T-----A
*
48221184 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ----ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
48221249 GTATATATGTGATAAGGCCTA
62 GTATATGTGTGATAAGGCCTA
48221270 ATG
1 ATG
48221273 GCCGATGTGA
Statistics
Matches: 161, Mismatches: 6, Indels: 24
0.84 0.03 0.13
Matches are distributed among these distances:
82 81 0.50
85 1 0.01
86 1 0.01
90 1 0.01
91 1 0.01
94 76 0.47
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (82 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATGTGTGATAAGGCCTA
Found at i:48221223 original size:176 final size:176
Alignment explanation
Indices: 48220929--48221272 Score: 643
Period size: 176 Copynumber: 2.0 Consensus size: 176
48220919 CAGCCAAGAC
*
48220929 AGTGTATATGTGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATGTGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
48220994 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
*
48221059 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGAATGTGAA
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGAATGTGAA
* *
48221105 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
48221170 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
48221235 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
48221273 GCCGATGTGA
Statistics
Matches: 163, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 163 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (176 bp):
AGTGTATATGTGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGAATGTGAA
Found at i:48221553 original size:37 final size:37
Alignment explanation
Indices: 48221477--48221555 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
48221467 CCGAGCTCTA
* *
48221477 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGAGT
1 AAGACCCGATAACTACGTGTGGGAATTATGTCCGAGT
* * * *
48221514 AAGATCCGATAACTTCGTGT-GGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTATGTCCGAGT
48221551 AAGAC
1 AAGAC
48221556 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
36 3 0.09
37 31 0.91
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGTCCGAGT
Found at i:48223722 original size:27 final size:27
Alignment explanation
Indices: 48223692--48223756 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
48223682 GGGCATATTC
48223692 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
48223719 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
48223746 GTCTTTTTACC
1 GTCATTTTACC
48223757 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Done.