Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 154 of 325
Found at i:48792624 original size:41 final size:40
Alignment explanation
Indices: 48792497--48792641 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
48792487 CTCGCACAAG
* * * * *
48792497 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
48792537 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
48792577 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
48792618 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
48792642 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:48794601 original size:21 final size:21
Alignment explanation
Indices: 48794577--48794619 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
48794567 ACTGGGTGGA
* * *
48794577 TAAGCTTTTACGAGCTTTTGT
1 TAAGCTCTTACAAGCTTCTGT
48794598 TAAGCTCTTACAAGCTTCTGT
1 TAAGCTCTTACAAGCTTCTGT
48794619 T
1 T
48794620 GGCATATTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (21 bp):
TAAGCTCTTACAAGCTTCTGT
Found at i:48794913 original size:30 final size:30
Alignment explanation
Indices: 48794879--48794935 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
48794869 TTTGATAAGC
*
48794879 TTTTGTTTAACCTGTCGAACTTACTAAACT
1 TTTTGTTTAACCTGTCAAACTTACTAAACT
*
48794909 TTTTGTTTAAGCTGTCAAACTTACTAA
1 TTTTGTTTAACCTGTCAAACTTACTAA
48794936 GCTTCATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.44
Consensus pattern (30 bp):
TTTTGTTTAACCTGTCAAACTTACTAAACT
Found at i:48795628 original size:21 final size:20
Alignment explanation
Indices: 48795600--48795638 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
48795590 GCATGTTTTT
*
48795600 TGAAGTTTCTTGTTAGATTA
1 TGAAGTTTCTTGATAGATTA
*
48795620 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
48795639 ATACAAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.49
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:48811355 original size:27 final size:26
Alignment explanation
Indices: 48811311--48811362 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
48811301 CTCGCTACAA
*
48811311 TCTAGTGGCCTCGCCACATATATCTGT
1 TCTAGTGACCTCGCCACA-ATATCTGT
* *
48811338 TCTAGTGACTTCGTCACAATATCTG
1 TCTAGTGACCTCGCCACAATATCTG
48811363 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTAGTGACCTCGCCACAATATCTGT
Found at i:48811413 original size:67 final size:67
Alignment explanation
Indices: 48811292--48811438 Score: 226
Period size: 67 Copynumber: 2.2 Consensus size: 67
48811282 GAGGAAGCGT
*
48811292 TCTGGCAGCCTCGCTACAATCTAGTGGCCTCGCCACATATATCTGTTCTAGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTACAATCTAGTGGCCTAGCCACATATATCTGTTCTAGTGACTTCGTCACAA
48811357 TA
66 TA
* * *
48811359 TCTGGCAACCTCGCTACAATCTGGTGGCCTAGCCACA-ATATCTAGATT-TGGTGACTTCGTCAC
1 TCTGGCAGCCTCGCTACAATCTAGTGGCCTAGCCACATATATCT-G-TTCTAGTGACTTCGTCAC
48811422 AATA
64 AATA
48811426 TCTGGCAGCCTCG
1 TCTGGCAGCCTCG
48811439 TTGCAATTTC
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
66 6 0.08
67 65 0.89
68 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTACAATCTAGTGGCCTAGCCACATATATCTGTTCTAGTGACTTCGTCACAA
TA
Found at i:48819714 original size:52 final size:52
Alignment explanation
Indices: 48819652--48819759 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
48819642 TAATTGATGG
** * **
48819652 GTTGAACGAGGATGTTGCACTTCTAGTCAGAGTTTTAGAATTGATGGAATTT
1 GTTGAACGAGGATGTTAAACTTCTAGTCAGAGTTCTAGAATTGAAAGAATTT
48819704 GTTGAACGAGGATGTTAAACTTCTAGTCAGAGTTCTAGAATTGAAAGAATTT
1 GTTGAACGAGGATGTTAAACTTCTAGTCAGAGTTCTAGAATTGAAAGAATTT
48819756 GTTG
1 GTTG
48819760 TCCTGGTTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.35
Consensus pattern (52 bp):
GTTGAACGAGGATGTTAAACTTCTAGTCAGAGTTCTAGAATTGAAAGAATTT
Found at i:48822229 original size:26 final size:25
Alignment explanation
Indices: 48822144--48822239 Score: 92
Period size: 24 Copynumber: 3.9 Consensus size: 25
48822134 TCTAAGCTAT
*
48822144 GAAT-AGTATGCTC-TATCGAGCTG-
1 GAATCAGTAAGCTCTTA-CGAGCTGA
* * *
48822167 GAAACAGTAAGCTCTGACGAGTTGA
1 GAATCAGTAAGCTCTTACGAGCTGA
48822192 GAAT-AGTAAGCTCTTACGAGCTGA
1 GAATCAGTAAGCTCTTACGAGCTGA
* *
48822216 TATATCAGTAAGCTCATACGAGCT
1 GA-ATCAGTAAGCTCTTACGAGCT
48822240 ACGGTGAGTC
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
23 3 0.05
24 33 0.56
25 6 0.10
26 17 0.29
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (25 bp):
GAATCAGTAAGCTCTTACGAGCTGA
Found at i:48831110 original size:26 final size:26
Alignment explanation
Indices: 48831081--48831136 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
48831071 TGATACAAAT
48831081 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48831107 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48831133 TGAT
1 TGAT
48831137 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:48835178 original size:43 final size:43
Alignment explanation
Indices: 48835120--48835224 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
48835110 GACGCCACTA
* * * * *
48835120 TCCCGGACAGGGTCTTACACGAAATC-ATATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCAAAAT-ACAATGCCAACG
*
48835163 TCCCAGACATGGTCTTACACGTAATCAAAATACAATGCCAACG
1 TCCCAGACATGGTCTTACACGAAATCAAAATACAATGCCAACG
*
48835206 TCCTAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
48835225 TGTAATCACA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 51 0.94
44 3 0.06
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCAAAATACAATGCCAACG
Found at i:48837867 original size:54 final size:54
Alignment explanation
Indices: 48837699--48837867 Score: 205
Period size: 55 Copynumber: 3.1 Consensus size: 54
48837689 CATTGCCTGT
* *
48837699 TATCCTTGCCTTAT-GAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGG
1 TATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGG
* * * ** * * * *
48837752 GATCTTTGCCTTATAGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGA
1 TATCCTTGCCTTATA-AAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGG
* *
48837807 TTTCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGG
1 TATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGG
48837861 TATCCTT
1 TATCCTT
48837868 AAACCCTAAT
Statistics
Matches: 92, Mismatches: 22, Indels: 3
0.79 0.19 0.03
Matches are distributed among these distances:
53 12 0.13
54 37 0.40
55 43 0.47
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
TATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGG
Found at i:48838778 original size:20 final size:20
Alignment explanation
Indices: 48838753--48838792 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
48838743 CCCTTCATTA
48838753 AAACTTTAGTTATTTTTATC
1 AAACTTTAGTTATTTTTATC
48838773 AAACTTTAGTTATTTTTATC
1 AAACTTTAGTTATTTTTATC
48838793 TATGTATGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (20 bp):
AAACTTTAGTTATTTTTATC
Found at i:48840046 original size:41 final size:40
Alignment explanation
Indices: 48839991--48840237 Score: 244
Period size: 41 Copynumber: 6.0 Consensus size: 40
48839981 TCCAAACGCT
* * * *
48839991 GCTATAGATCGAGGTTTTAGCGACGCTTCTAGAAAACCACT
1 GCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAA-CACC
* *
48840032 GCTATAGGTCGAGGTTTTAGTGGCGCTTCTGGAAAAACGCC
1 GCTATAGGTCGAGGTTTTAGCGGCGCTTCTGG-AAAACACC
* * *
48840073 GCTATAGGTCGAGGTTTTAGTGGCACTTCTAGAAAA-ACGTC
1 GCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAACAC--C
* * * *
48840114 GCTATAGGTCGAGGTTTTAGCGGCGCTTTTGGGGAAGCGCC
1 GCTATAGGTCGAGGTTTTAGCGGCGCTTCT-GGAAAACACC
* * * *
48840155 GCTATAGGTCAAGCTTTTAGCGGCACTTTTGGAGAAACACC
1 GCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGA-AAACACC
* * * *
48840196 GCTATAGATCGAGGTTTTAGCGGTGCTTTTGAAAAACACC
1 GCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAACACC
48840236 GC
1 GC
48840238 AAAAAATATA
Statistics
Matches: 172, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 15 0.09
41 148 0.86
42 7 0.04
43 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAACACC
Found at i:48840121 original size:82 final size:80
Alignment explanation
Indices: 48839984--48840237 Score: 278
Period size: 82 Copynumber: 3.1 Consensus size: 80
48839974 TTTTTGGTCC
* * * *
48839984 AAACGCTGCTATAGATCGAGGTTTTAGCGACGCTTCTAGAAAACCACT-GCTATAGGTCGAGGTT
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTAGAAAA--ACTCGCTATAGGTCGAGGTT
*
48840048 TTAGTGGCGCTTCTGGAA
64 TTAGCGGCGCTT-TGGAA
*
48840066 AAACGCCGCTATAGGTCGAGGTTTTAGTGGCACTTCTAGAAAAACGTCGCTATAGGTCGAGGTTT
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTAGAAAAAC-TCGCTATAGGTCGAGGTTT
**
48840131 TAGCGGCGCTTTTGGGG
65 TAGCGGCGC-TTTGGAA
* * * * * *
48840148 AAGCGCCGCTATAGGTCAAGCTTTTAGCGGCACTTTTGGAGAAACAC-CGCTATAGATCGAGGTT
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCT--AGAAAAACTCGCTATAGGTCGAGGTT
* *
48840212 TTAGCGGTGCTTTTGAA
64 TTAGCGGCGCTTTGGAA
*
48840229 AAACACCGC
1 AAACGCCGC
48840238 AAAAAATATA
Statistics
Matches: 146, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
80 2 0.01
81 12 0.08
82 123 0.84
83 2 0.01
84 7 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
AAACGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTAGAAAAACTCGCTATAGGTCGAGGTTTT
AGCGGCGCTTTGGAA
Found at i:48840161 original size:123 final size:123
Alignment explanation
Indices: 48839991--48840215 Score: 297
Period size: 123 Copynumber: 1.8 Consensus size: 123
48839981 TCCAAACGCT
* * * *
48839991 GCTATAGATCGAGGTTTTAGCGACGCTTCTAGAAAACCACTGCTATAGGTCGAGGTTTTAGTGGC
1 GCTATAGATCGAGGTTTTAGCGACGCTTCTAGAAAACCACCGCTATAGGTCAAGCTTTTAGCGGC
* * *
48840056 GCTTCTGGAAAAACGCCGCTATAGGTCGAGGTTTTAGTGGCACTTCTAGAAAAACGTC
66 ACTTCTGGAAAAACACCGCTATAGATCGAGGTTTTAGTGGCACTTCTAGAAAAACGTC
* * * * ** * *
48840114 GCTATAGGTCGAGGTTTTAGCGGCGCTTTTGGGGAAGCGCCGCTATAGGTCAAGCTTTTAGCGGC
1 GCTATAGATCGAGGTTTTAGCGACGCTTCTAGAAAACCACCGCTATAGGTCAAGCTTTTAGCGGC
* *
48840179 ACTTTTGGAGAAACACCGCTATAGATCGAGGTTTTAG
66 ACTTCTGGAAAAACACCGCTATAGATCGAGGTTTTAG
48840216 CGGTGCTTTT
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
123 85 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (123 bp):
GCTATAGATCGAGGTTTTAGCGACGCTTCTAGAAAACCACCGCTATAGGTCAAGCTTTTAGCGGC
ACTTCTGGAAAAACACCGCTATAGATCGAGGTTTTAGTGGCACTTCTAGAAAAACGTC
Found at i:48840470 original size:22 final size:21
Alignment explanation
Indices: 48840421--48840494 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 21
48840411 TACGGTTTAG
* *
48840421 GGTTTAAGATTTAAGAGTTACT
1 GGTTTAAGGTTTATGAGTTA-T
**
48840443 ATTTTAAGGTTTATGAGTTAT
1 GGTTTAAGGTTTATGAGTTAT
* *
48840464 GGGTTTAGGGTTTATGATTTAT
1 -GGTTTAAGGTTTATGAGTTAT
48840486 GGTTTAAGG
1 GGTTTAAGG
48840495 GTTGGGGTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
21 9 0.21
22 33 0.79
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (21 bp):
GGTTTAAGGTTTATGAGTTAT
Found at i:48840515 original size:13 final size:14
Alignment explanation
Indices: 48840486--48840532 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
48840476 TATGATTTAT
*
48840486 GGTTTAAGGGTTGG
1 GGTTTAAGGGTTAG
48840500 GGTTTAA-GGTTAG
1 GGTTTAAGGGTTAG
*
48840513 GGTTTTAGGGGTTATG
1 GG-TTTAAGGGTTA-G
48840529 GGTT
1 GGTT
48840533 ATATTCTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 7 0.25
14 11 0.39
15 7 0.25
16 3 0.11
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:48843796 original size:3 final size:3
Alignment explanation
Indices: 48843788--48843813 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
48843778 ATTGGTAACA
48843788 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
48843814 ATGTTAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:48845635 original size:24 final size:24
Alignment explanation
Indices: 48845578--48845624 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
48845568 AACCATGATG
48845578 GTTAATTATTACGAGTTTTGTAGT
1 GTTAATTATTACGAGTTTTGTAGT
*
48845602 GTTAATTATTACTAGTTTTGTAG
1 GTTAATTATTACGAGTTTTGTAG
48845625 CTTCTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (24 bp):
GTTAATTATTACGAGTTTTGTAGT
Found at i:48845792 original size:24 final size:22
Alignment explanation
Indices: 48845765--48845808 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
48845755 AATTTCAAAA
48845765 ATAAAACATAATATAATATTTATC
1 ATAAAA-ATAA-ATAATATTTATC
*
48845789 ATAAAAATAAATATTATTTA
1 ATAAAAATAAATAATATTTA
48845809 ATAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAAAATAAATAATATTTATC
Found at i:48846823 original size:27 final size:24
Alignment explanation
Indices: 48846793--48846856 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 24
48846783 TCGTGGCGTA
48846793 GCCACTAATGTCAGAATGCGTGGCAAG
1 GCCACTAATGT-AGAAT--GTGGCAAG
*
48846820 GCCACTAGAACGGTAGAATGTGGCAAG
1 GCCACT--AA-TGTAGAATGTGGCAAG
48846847 GCCACTAATG
1 GCCACTAATG
48846857 CAGTACATCC
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
24 1 0.03
25 2 0.06
27 20 0.62
29 7 0.22
30 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (24 bp):
GCCACTAATGTAGAATGTGGCAAG
Found at i:48854433 original size:49 final size:50
Alignment explanation
Indices: 48854251--48854448 Score: 227
Period size: 49 Copynumber: 3.9 Consensus size: 50
48854241 ATCTATTGTG
* * *
48854251 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * **
48854302 CGATCACGTGTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATG-TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
48854353 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * **
48854403 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
48854449 GCTTTGGCTA
Statistics
Matches: 123, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.33
50 35 0.28
51 16 0.13
52 32 0.26
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:48854466 original size:102 final size:102
Alignment explanation
Indices: 48854259--48854466 Score: 251
Period size: 102 Copynumber: 2.0 Consensus size: 102
48854249 TGAGGTCGCA
*
48854259 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTTGTAGTACTAA
** * * *
48854324 GTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
66 GTGCAGGCTACTACGCATACCAGATGCTTAGGTCAAG
* * * * *
48854361 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GGTCGCATG-TGTAGTACTAT
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTTGTAGTACTAA
* *
48854423 GTGCAGGCTACTATGCATACCAGATAGCTTTGGCTACAAG
66 GTGCAGGCTACTACGCATACCAGAT-GCTTAGG-T-CAAG
48854463 TGTG
1 TGTG
48854467 AAAATATGTG
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
99 31 0.34
100 11 0.12
101 3 0.03
102 45 0.50
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (102 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTTGTAGTACTAA
GTGCAGGCTACTACGCATACCAGATGCTTAGGTCAAG
Found at i:48866267 original size:69 final size:69
Alignment explanation
Indices: 48866181--48866317 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
48866171 AAAGCTTTTC
48866181 TGACACTTTTCAGACCATTCAAATTTCACATCTTTCTGAAA-CAATTTCGTCAACGAAGTAGCAA
1 TGACACTTTTCAGACCATTCAAATTTCACATCTTTCT-AAAGCAATTTCGTCAACGAAGTAGCAA
48866245 TCATT
65 TCATT
48866250 TGACACTTTTCAGACCATTCAAATTTCACATCTTTCTAAAGCAATTTCGTCAACGAAGTAGCAAT
1 TGACACTTTTCAGACCATTCAAATTTCACATCTTTCTAAAGCAATTTCGTCAACGAAGTAGCAAT
48866315 CAT
66 CAT
48866318 GGAAAAGCCT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
68 3 0.04
69 64 0.96
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (69 bp):
TGACACTTTTCAGACCATTCAAATTTCACATCTTTCTAAAGCAATTTCGTCAACGAAGTAGCAAT
CATT
Found at i:48872317 original size:3 final size:3
Alignment explanation
Indices: 48872309--48872347 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
48872299 TATGTATTGA
48872309 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
48872348 TTGTTTAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:48886842 original size:15 final size:15
Alignment explanation
Indices: 48886818--48886865 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
48886808 AGGAAACCGA
48886818 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
48886833 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
48886847 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
48886863 ATA
1 ATA
48886866 CGATACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:48895201 original size:22 final size:22
Alignment explanation
Indices: 48895176--48895239 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
48895166 TGGTTATAAA
* **
48895176 CCATAATCATGATGGCACAGGG
1 CCATAATCAGGATGGCACAAAG
*
48895198 CCATAATCAGGATGACACAAAG
1 CCATAATCAGGATGGCACAAAG
48895220 CCATAATCAGGATGGCACAA
1 CCATAATCAGGATGGCACAA
48895240 GGCTATTGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (22 bp):
CCATAATCAGGATGGCACAAAG
Found at i:48895329 original size:27 final size:27
Alignment explanation
Indices: 48895288--48895389 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 27
48895278 CAGCGACGAC
* * * *
48895288 AATATAATCGGCACATAGCCACGGGTA
1 AATATGATTGGCACAAAGCCACAGGTA
* * * * *
48895315 AATATGATTGACACAGAGTCATTA-ATA
1 AATATGATTGGCACAAAGCCA-CAGGTA
* *
48895342 AATATGATAGGCACACAGCCACAGGTA
1 AATATGATTGGCACAAAGCCACAGGTA
*
48895369 AATACGATTGGCACAAAGCCA
1 AATATGATTGGCACAAAGCCA
48895390 TAATCAAGAT
Statistics
Matches: 56, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (27 bp):
AATATGATTGGCACAAAGCCACAGGTA
Found at i:48895598 original size:50 final size:50
Alignment explanation
Indices: 48895466--48895598 Score: 176
Period size: 50 Copynumber: 2.7 Consensus size: 50
48895456 GCCATCTGTC
* * * *
48895466 GATCCACAGTCGTCTCGTGCGACACGTGCGACATTAACAGATCAATACTG
1 GATCCACAATCGTCTCGTGCGACCCGTGCAACCTTAACAGATCAATACTG
* * *
48895516 GATCCAAAATCATCTCGTACGACCCGTGCAACCTTAACAGATCAATACTG
1 GATCCACAATCGTCTCGTGCGACCCGTGCAACCTTAACAGATCAATACTG
* * *
48895566 TATCCACAATCGTCTTGTGCAACCCGTGCAACC
1 GATCCACAATCGTCTCGTGCGACCCGTGCAACC
48895599 CTATCAGAAC
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (50 bp):
GATCCACAATCGTCTCGTGCGACCCGTGCAACCTTAACAGATCAATACTG
Found at i:48895870 original size:26 final size:27
Alignment explanation
Indices: 48895847--48895948 Score: 120
Period size: 26 Copynumber: 3.9 Consensus size: 27
48895837 TCATTTTTCC
*
48895847 CTAC-AGGGATATTTCAGTAATTTTACA
1 CTACAAGGG-TATTTCAATAATTTTACA
48895874 C-ACAAGGGTATTTCAATAATTTTACA
1 CTACAAGGGTATTTCAATAATTTTACA
*** *
48895900 CTACAAGGGTATTTTGGTAATTGTA-A
1 CTACAAGGGTATTTCAATAATTTTACA
*
48895926 CTACAATGGTATTTCAATAATTT
1 CTACAAGGGTATTTCAATAATTT
48895949 CACAAATCGG
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 39 0.62
27 24 0.38
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (27 bp):
CTACAAGGGTATTTCAATAATTTTACA
Found at i:48895913 original size:53 final size:53
Alignment explanation
Indices: 48895847--48895948 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 53
48895837 TCATTTTTCC
*
48895847 CTACAGGGATATTTCAGTAATTTTACAC-ACAAGGGTATTTCAATAATTTTACA
1 CTACAGGGATATTTCAGTAATTGTA-ACTACAAGGGTATTTCAATAATTTTACA
** *
48895900 CTACAAGGG-TATTTTGGTAATTGTAACTACAATGGTATTTCAATAATTT
1 CTAC-AGGGATATTTCAGTAATTGTAACTACAAGGGTATTTCAATAATTT
48895949 CACAAATCGG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
52 2 0.05
53 37 0.86
54 4 0.09
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (53 bp):
CTACAGGGATATTTCAGTAATTGTAACTACAAGGGTATTTCAATAATTTTACA
Found at i:48900630 original size:27 final size:27
Alignment explanation
Indices: 48900529--48900630 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
48900519 TGCCCTACTG
* * * *
48900529 GGGTATTTCGATAATTTTACATTACAA
1 GGGTATTTTGGTAATTTCACACTACAA
* *
48900556 GGGTATTCTGGTAATTTTACACTACAA
1 GGGTATTTTGGTAATTTCACACTACAA
* *
48900583 GGGTATTTTGGTAATTACACACTACAC
1 GGGTATTTTGGTAATTTCACACTACAA
*
48900610 GGGTATTTTAGTAATTTCACA
1 GGGTATTTTGGTAATTTCACA
48900631 AATTGGGGGT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTCACACTACAA
Found at i:48904670 original size:14 final size:15
Alignment explanation
Indices: 48904651--48904679 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48904641 CGGAATGGTG
48904651 ATTTTG-GTGACTTT
1 ATTTTGTGTGACTTT
48904665 ATTTTGTGTGACTTT
1 ATTTTGTGTGACTTT
48904680 GTATCTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.59
Consensus pattern (15 bp):
ATTTTGTGTGACTTT
Found at i:48908374 original size:28 final size:28
Alignment explanation
Indices: 48908311--48908492 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
48908301 ATATTAAGTC
* *
48908311 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
48908338 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
48908366 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
48908394 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
48908422 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
48908450 CGCACACTTAGTGCTACGTAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
48908478 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48908493 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 21 0.14
28 128 0.86
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:48920017 original size:21 final size:21
Alignment explanation
Indices: 48919991--48920042 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
48919981 AATTCCTCCT
48919991 TGGTTGCTCCGGCCGGAGTTG
1 TGGTTGCTCCGGCCGGAGTTG
48920012 TGGTTGCTCCGGCCGGAGTTG
1 TGGTTGCTCCGGCCGGAGTTG
48920033 TGGTTGCTCC
1 TGGTTGCTCC
48920043 AGTTGTGGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.04, C:0.25, G:0.40, T:0.31
Consensus pattern (21 bp):
TGGTTGCTCCGGCCGGAGTTG
Found at i:48920384 original size:21 final size:22
Alignment explanation
Indices: 48920351--48920398 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
48920341 TTTTCATTGA
**
48920351 AAACCCTTCTTAAAAT-AAAAG
1 AAACCCTAATTAAAATAAAAAG
**
48920372 AAACCCTAATTAACTTAAAAAG
1 AAACCCTAATTAAAATAAAAAG
48920394 AAACC
1 AAACC
48920399 TTTCAGTTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.54, C:0.21, G:0.04, T:0.21
Consensus pattern (22 bp):
AAACCCTAATTAAAATAAAAAG
Found at i:48921435 original size:28 final size:29
Alignment explanation
Indices: 48921403--48921517 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
48921393 TACCTGTATC
* *
48921403 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
48921431 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
48921460 TGGCCTATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
48921489 TGGCCCGTTAGGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
48921517 T
1 T
48921518 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:48921457 original size:57 final size:57
Alignment explanation
Indices: 48921394--48921509 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
48921384 AATTTCACAT
* *
48921394 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC-AATC
* * * *
48921451 ACCTGTATATGGCCTATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
48921508 AC
1 AC
48921510 ATTCATATTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 27 0.52
58 25 0.48
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
Found at i:48925890 original size:46 final size:48
Alignment explanation
Indices: 48925818--48925920 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
48925808 GACAGGACAG
* * * *
48925818 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
48925864 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
48925912 GACAGGAAT
1 GACAGGAAT
48925921 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:48928387 original size:29 final size:28
Alignment explanation
Indices: 48928330--48928415 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
48928320 TACTTGTATC
* *
48928330 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
48928358 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
48928387 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
48928415 T
1 T
48928416 TCATGCTCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:48929774 original size:16 final size:16
Alignment explanation
Indices: 48929753--48929784 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
48929743 AAGTTCAGGA
48929753 TTTCGGGATTTTTGGG
1 TTTCGGGATTTTTGGG
48929769 TTTCGGGATTTTTGGG
1 TTTCGGGATTTTTGGG
48929785 GCATTACACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.38, T:0.50
Consensus pattern (16 bp):
TTTCGGGATTTTTGGG
Found at i:48930465 original size:7 final size:7
Alignment explanation
Indices: 48930455--48930486 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
48930445 TTATATACAT
48930455 AATACTA
1 AATACTA
48930462 AATACTA
1 AATACTA
48930469 AATACTA
1 AATACTA
*
48930476 AGTACTA
1 AATACTA
48930483 AATA
1 AATA
48930487 TGAAACGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:48932179 original size:13 final size:13
Alignment explanation
Indices: 48932161--48932185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48932151 GTTTTATGTT
48932161 TTAATTTAATTAA
1 TTAATTTAATTAA
48932174 TTAATTTAATTA
1 TTAATTTAATTA
48932186 CAAATTTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAATTTAATTAA
Found at i:48936717 original size:805 final size:803
Alignment explanation
Indices: 48935124--48936730 Score: 2935
Period size: 805 Copynumber: 2.0 Consensus size: 803
48935114 CAAGGCACAG
*
48935124 AAGTACTACAATATGTTATTCAATTTCATACCAAATTCACATTCAAATCAACTAAATGGTCACAT
1 AAGTACTACAATATGCTATTCAATTTCATACCAAATTCACATTCAAATCAACTAAATGGTCACAT
*
48935189 TCAATTATGCACTATTTTACTTAAAGCCACAAGCATATCAACTTCAAATTTCAACCATTTGACAT
66 TCAATTATGCACTATTTTACTTAAAGCCACAAGCATATCAACTTCAAATTTCAACCATTTAACAT
*
48935254 CCATAATTCCAACTCACAACAAACATATAAATGGCAATATTACACAACATATCAAAAGGCCTTTC
131 CCATAATTCCAACTCACAACAAACATATAAATGGAAATATTACACAACATATCAAAAGGCCTTTC
* *
48935319 TCACATATATACATATATCACCAAACATACCAAAATAAGCCAAAATCACGTGGCTATACACATAA
196 TCACAGATATACATATATCACCAAACATACCAAAATAAGCCAAAATCACCTGGCTATACACATAA
*
48935384 CAAACCATTCATCATTTACAAACCAACTCAAATGGCTGAATCCATTACTAACATATACCAAAATG
261 CAAACCATTCATCATTTACAAACCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATG
48935449 ACCATAAATCCTATACATGCCATATAACCAAATACATAAGCTCAAAAGTACCAAAGTGGAAGCTC
326 ACCATAAATCCTATACATGCCATATAACCAAATACATAAGCTCAAAAGTACCAAAGTGGAAGCTC
** *
48935514 GATAGTGTGATGCAATCTCCGACGACTCCCAATCTGAGCTAGCTTCAATATTCACTATAAAACAC
391 GATAGTGCAATGCAATCTCCGACGACTCCCAATCTGAGCTAGCTTCAATATTCACTATAAAACAA
* *
48935579 GGAAAAGTAAACAAAGTAAGCTATAAAGCTTAGTAAGCTCATATACTAAGTAAGTAAAACTTACC
456 GAAAAAGTAAACAAAGTAAGCTATAAAGCTTAGTAAGATCATATACTAAGTAAGTAAAACTTACC
48935644 AACCAACAATTCAATAACATAAACATCATATAATGGAATTCAAATTTGAAGCATAACTTAACACA
521 AACCAACAATTCAATAACATAAACATCATATAATGGAATTCAAATTTGAAGCATAACTTAACACA
*
48935709 TATATTCAATCCAAGGATTAAACACAATTTCCATCAACTTCTTCGATTTGATGATTGTATAGTTC
586 CATATTCAATCCAAGGATTAAACACAATTTCCATCAACTTCTTCGATTTGATGATTGTATAGTTC
*
48935774 ACGTACATACATGTACAAGCTCGTATCAATTTCATACTCATCCATATCTTTGATATACCCGTTGA
651 ACGTACATACATGTACAAGCTCGTATCAATTTCATACTCATCCATATCCTTGATATACCCGTTGA
* **
48935839 ACCATTTGAAATACTATTGGATACTCAGGAATCTCACACCCTAAGTGTCAATACATAGCCAAAGC
716 ACCATTTGAAATACTATTGGATACTCAGGAATCTCACACCCTAACTACCAATACATAGCCAAAGC
48935904 TATCTCAATCTCATATCACATAC
781 TATCTCAATCTCATATCACATAC
*
48935927 AAGTACTACAATATGCTATTCAATTTCATACCAAATTCACATTCTCAAATCACCTAAATGGTCAC
1 AAGTACTACAATATGCTATTCAATTTCATACCAAATTCACA-T-TCAAATCAACTAAATGGTCAC
48935992 ATTCAATTATGCACTATTTTACTTAAAGCCACAAGCATATCAACTTCAAATTTCAACCATTTAAC
64 ATTCAATTATGCACTATTTTACTTAAAGCCACAAGCATATCAACTTCAAATTTCAACCATTTAAC
* *
48936057 ATCCATAATTCCATCTCACAACAAGCATATAAATGGAAATATTACACAACATATCAAAAGGCCTT
129 ATCCATAATTCCAACTCACAACAAACATATAAATGGAAATATTACACAACATATCAAAAGGCCTT
48936122 TCTCACAGATATACATATATCACCAAACATACCAAAATAAGCCAAAATCACCTGGCTATACACAT
194 TCTCACAGATATACATATATCACCAAACATACCAAAATAAGCCAAAATCACCTGGCTATACACAT
48936187 AACAAACCATTCATCATTTACAAACCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAA
259 AACAAACCATTCATCATTTACAAACCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAA
48936252 TGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCTCAAAAGTACCAAAGTGGAAGC
324 TGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCTCAAAAGTACCAAAGTGGAAGC
* ** *
48936317 TTGATAGTGCAATGCAATCTTTGACGACTCCCAATCTGAGCTAGCTTCGATATTCACTATAAAAC
389 TCGATAGTGCAATGCAATCTCCGACGACTCCCAATCTGAGCTAGCTTCAATATTCACTATAAAAC
* *
48936382 AAGAAAAAGTAAACAAAGTAAGCTATAAATCTTAGTAAGATCGTATACTAAGTAAGTAAAACTTA
454 AAGAAAAAGTAAACAAAGTAAGCTATAAAGCTTAGTAAGATCATATACTAAGTAAGTAAAACTTA
48936447 CCAACCAACAATTCAATAACATAAACATCATATAATGGAATTCAAATTTGAAGCATAACTTAACA
519 CCAACCAACAATTCAATAACATAAACATCATATAATGGAATTCAAATTTGAAGCATAACTTAACA
* *
48936512 CACATATTCATTCCAAGGATTAAACATAATTTCCATCAACTTCTTCGATTTGATGATTGTATAGT
584 CACATATTCAATCCAAGGATTAAACACAATTTCCATCAACTTCTTCGATTTGATGATTGTATAGT
*
48936577 TCACGTACATACCTGTACAAGCTCGTATCAATTTCATACTCATCCATATCCTTGATATACCCGTT
649 TCACGTACATACATGTACAAGCTCGTATCAATTTCATACTCATCCATATCCTTGATATACCCGTT
*
48936642 GAACCATTTGAAATACTATTGGATACTCAGGAATCTCACACCCTAACTACCAATACATAGCCGAA
714 GAACCATTTGAAATACTATTGGATACTCAGGAATCTCACACCCTAACTACCAATACATAGCCAAA
48936707 GCTATCTCAATCTCATATCACATA
779 GCTATCTCAATCTCATATCACATA
48936731 TAATGCTCAC
Statistics
Matches: 773, Mismatches: 29, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
803 40 0.05
804 1 0.00
805 732 0.95
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.28
Consensus pattern (803 bp):
AAGTACTACAATATGCTATTCAATTTCATACCAAATTCACATTCAAATCAACTAAATGGTCACAT
TCAATTATGCACTATTTTACTTAAAGCCACAAGCATATCAACTTCAAATTTCAACCATTTAACAT
CCATAATTCCAACTCACAACAAACATATAAATGGAAATATTACACAACATATCAAAAGGCCTTTC
TCACAGATATACATATATCACCAAACATACCAAAATAAGCCAAAATCACCTGGCTATACACATAA
CAAACCATTCATCATTTACAAACCAACTCAAATGGCTAAATCCATTACTAACATATACCAAAATG
ACCATAAATCCTATACATGCCATATAACCAAATACATAAGCTCAAAAGTACCAAAGTGGAAGCTC
GATAGTGCAATGCAATCTCCGACGACTCCCAATCTGAGCTAGCTTCAATATTCACTATAAAACAA
GAAAAAGTAAACAAAGTAAGCTATAAAGCTTAGTAAGATCATATACTAAGTAAGTAAAACTTACC
AACCAACAATTCAATAACATAAACATCATATAATGGAATTCAAATTTGAAGCATAACTTAACACA
CATATTCAATCCAAGGATTAAACACAATTTCCATCAACTTCTTCGATTTGATGATTGTATAGTTC
ACGTACATACATGTACAAGCTCGTATCAATTTCATACTCATCCATATCCTTGATATACCCGTTGA
ACCATTTGAAATACTATTGGATACTCAGGAATCTCACACCCTAACTACCAATACATAGCCAAAGC
TATCTCAATCTCATATCACATAC
Found at i:48938968 original size:43 final size:42
Alignment explanation
Indices: 48938885--48939001 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
48938875 AGGGTTACTA
* * ** *
48938885 AGATTATACGTAAGACCATATTTGGGATATGGCATTGATATG
1 AGATTACATGTAAGACCATAGCTGGGATATGGCATCGATATG
* *
48938927 AGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATATG
1 AGA-TTACATGTAAGACCATAGCTGGGATA-TGGCATCGATATG
**
48938970 AGATTACATGTAAGACCATATTTGGGATATGG
1 AGATTACATGTAAGACCATAGCTGGGATATGG
48939002 AATTGGTATA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.41
43 36 0.59
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.31
Consensus pattern (42 bp):
AGATTACATGTAAGACCATAGCTGGGATATGGCATCGATATG
Found at i:48943579 original size:26 final size:26
Alignment explanation
Indices: 48943550--48943726 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
48943540 TATTGAAGCC
* *
48943550 CGCACACTCAGTGCTA-TACATCAACT
1 CGCACACTTAGTGCTACTA-ATCAAAT
*
48943576 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* * *
48943603 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTAC-TAATCA-AAT
** ** *
48943631 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* **
48943658 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-C-TAATCAAAT
* * *
48943685 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
48943712 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48943727 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.11
27 85 0.69
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACTAATCAAAT
Found at i:48943607 original size:27 final size:27
Alignment explanation
Indices: 48943570--48943725 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
48943560 GTGCTATACA
* * *
48943570 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
48943597 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
48943624 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
48943652 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
48943679 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
48943706 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
48943726 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:48943642 original size:55 final size:55
Alignment explanation
Indices: 48943550--48943726 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
48943540 TATTGAAGCC
* * * *
48943550 CGCACACTCAGTGCTAT-ACA-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
48943603 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
48943658 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
48943712 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48943727 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 17 0.17
54 41 0.40
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:48943669 original size:82 final size:81
Alignment explanation
Indices: 48943570--48943725 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
48943560 GTGCTATACA
* * *
48943570 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
48943634 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
48943652 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
48943717 ACTTAGTGC
66 ACTTAGTGC
48943726 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48951717 original size:26 final size:26
Alignment explanation
Indices: 48951688--48951864 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
48951678 ATATTGAGCC
* *
48951688 CGCACACTCAGTGCTA-TACATCAACT
1 CGCACACTTAGTGCTACTA-ATCAAAT
*
48951714 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* * *
48951741 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTAC-TAATCA-AAT
** ** *
48951769 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* **
48951796 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-C-TAATCAAAT
* * *
48951823 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
48951850 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48951865 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.11
27 85 0.69
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACTAATCAAAT
Found at i:48951745 original size:27 final size:27
Alignment explanation
Indices: 48951708--48951863 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
48951698 GTGCTATACA
* * *
48951708 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
48951735 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
48951762 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
48951790 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
48951817 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
48951844 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
48951864 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:48951780 original size:55 final size:55
Alignment explanation
Indices: 48951688--48951864 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
48951678 ATATTGAGCC
* * * *
48951688 CGCACACTCAGTGCTAT-ACA-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
48951741 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
48951796 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
48951850 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48951865 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 17 0.17
54 41 0.40
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:48951807 original size:82 final size:81
Alignment explanation
Indices: 48951708--48951863 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
48951698 GTGCTATACA
* * *
48951708 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
48951772 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
48951790 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
48951855 ACTTAGTGC
66 ACTTAGTGC
48951864 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48967650 original size:28 final size:28
Alignment explanation
Indices: 48967586--48967653 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
48967576 ATGCAGTTAT
* *
48967586 ACTGATACTGTATAGGGCTTAGGCCCAC
1 ACTGATACTGTTTAGGGCTAAGGCCCAC
* * *
48967614 ATTGCTACTGTTTAAGGGCTAAGGCCCAG
1 ACTGATACTGTTT-AGGGCTAAGGCCCAC
48967643 ACTG-TACTGTT
1 ACTGATACTGTT
48967654 ACTGAATAGG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 17 0.52
29 16 0.48
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (28 bp):
ACTGATACTGTTTAGGGCTAAGGCCCAC
Found at i:48970518 original size:29 final size:28
Alignment explanation
Indices: 48970427--48970533 Score: 92
Period size: 29 Copynumber: 3.8 Consensus size: 28
48970417 TACATACATG
* *
48970427 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTC-AATT
* * *
48970455 CAAATGGCCCATCT-GGCCCAGTTTATATT
1 CATATGGCCCA-CTAGGCCCAATTCA-ATT
*
48970484 CTTATGGCCCACTAGGCCCAATTCAACTT
1 CATATGGCCCACTAGGCCCAATTCAA-TT
* *
48970513 CATATGGCCCATTAGTCCCAA
1 CATATGGCCCACTAGGCCCAA
48970534 ATCATATTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
28 18 0.29
29 44 0.71
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATTCAATT
Found at i:48971153 original size:41 final size:41
Alignment explanation
Indices: 48970984--48971141 Score: 155
Period size: 41 Copynumber: 3.9 Consensus size: 41
48970974 CTTAGTTTTG
48970984 GAGCTTGGTCTCGAAGGGCTTTCGAGCCAGTGCTAATAACC
1 GAGCTTGGTCTCGAAGGGCTTTCGAGCCAGTGCTAATAACC
* * * * * * *
48971025 GAACTTAGTTTTGGAGGGCTTTAGAGCCAGTG-TCATAACC
1 GAGCTTGGTCTCGAAGGGCTTTCGAGCCAGTGCTAATAACC
* *
48971065 -AGACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--CC
1 GAG-CTTGGTCT-CGAAGGGCTTTCGAGCCAGT-G-CTAATAACC
*
48971106 GAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 GAGCTTGGTCTCGAAGGGCTTTCGAGCCAGTGCTAA
48971142 GAATCGGGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 16
0.75 0.13 0.13
Matches are distributed among these distances:
39 6 0.06
40 30 0.32
41 52 0.55
42 3 0.03
43 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
GAGCTTGGTCTCGAAGGGCTTTCGAGCCAGTGCTAATAACC
Found at i:48976650 original size:12 final size:12
Alignment explanation
Indices: 48976633--48976657 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48976623 ATTGTAAGGT
48976633 TACCCGTTTCTA
1 TACCCGTTTCTA
48976645 TACCCGTTTCTA
1 TACCCGTTTCTA
48976657 T
1 T
48976658 TGTGTCAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.08, T:0.44
Consensus pattern (12 bp):
TACCCGTTTCTA
Found at i:48979587 original size:41 final size:41
Alignment explanation
Indices: 48979416--48979575 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 41
48979406 GGGTCTAAAT
48979416 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * * *
48979457 CCGAACTTAGTTTCGAAGGGCTTTAGAACCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* *
48979497 CCG-GACTTAGT-TCCGAAGGGCCTTTGAGCCAGTGGTCT-A-AA
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
*
48979538 CTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
48979576 GAATCGGGCT
Statistics
Matches: 98, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
39 3 0.03
40 33 0.34
41 58 0.59
42 3 0.03
43 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:48983707 original size:14 final size:14
Alignment explanation
Indices: 48983688--48983731 Score: 72
Period size: 14 Copynumber: 3.1 Consensus size: 14
48983678 CATCAACAAC
48983688 TAACTACTAACTGT
1 TAACTACTAACTGT
48983702 TAACTACTCAA-TGT
1 TAACTACT-AACTGT
48983716 TAACTACTAACTGT
1 TAACTACTAACTGT
48983730 TA
1 TA
48983732 CAACCGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.07
14 24 0.86
15 2 0.07
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (14 bp):
TAACTACTAACTGT
Found at i:48988280 original size:15 final size:14
Alignment explanation
Indices: 48988249--48988289 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
48988239 AACAACTAAT
*
48988249 TACTAACTATTAGC
1 TACTAACTATTAAC
*
48988263 TACTCAACTGTTAAC
1 TACT-AACTATTAAC
48988278 TACTAACTATTA
1 TACTAACTATTA
48988290 CAATTGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.37
Consensus pattern (14 bp):
TACTAACTATTAAC
Found at i:48989146 original size:76 final size:76
Alignment explanation
Indices: 48989020--48989165 Score: 238
Period size: 76 Copynumber: 1.9 Consensus size: 76
48989010 CGGTTAATCA
* * *
48989020 ATCGGTTAACTAAATTTTTTTAGTCCGGGGTCGGTTAATTACTTTTTGATTTTTCGGTTAACGGT
1 ATCGGTTAACCAAATATTTTTAGTCCGGGGTCGGTTAATTACTTTTTGATTTTTCGGTTAACAGT
48989085 TAATTCGATCG
66 TAATTCGATCG
* * *
48989096 ATCGGTTAACCGAATATTTTTGGTCCGGGGTCGGTTAATTATTTTTTGATTTTTCGGTTAACAGT
1 ATCGGTTAACCAAATATTTTTAGTCCGGGGTCGGTTAATTACTTTTTGATTTTTCGGTTAACAGT
48989161 TAATT
66 TAATT
48989166 TGGTTTGAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 64 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.45
Consensus pattern (76 bp):
ATCGGTTAACCAAATATTTTTAGTCCGGGGTCGGTTAATTACTTTTTGATTTTTCGGTTAACAGT
TAATTCGATCG
Found at i:48990298 original size:113 final size:110
Alignment explanation
Indices: 48990120--48990392 Score: 282
Period size: 113 Copynumber: 2.5 Consensus size: 110
48990110 TACTGTTTGC
* * ** *
48990120 ATGCTATCATAAATTGAATTAAAG-TTGTTTGAGTGTTTCAAATTGAGCATATTCATACTATCTT
1 ATGCTGTCCTAAATTGAATTAAAGTTTGTTTGAGTGTAACAAATTAAGCATATTCATACTATCTT
*
48990184 AAATTGAATCAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATT-TT
66 AAATTGAATCAAGCTGTTG-TTTAATGTTTCAAATTGAGCATTATT
* * * * * *
48990229 CGTGTTGTCCTAAATTGAATTAAAGTTGGTGTTTTAGTGTAACAAATTAAGCATTTTCATTCTGT
1 -ATGCTGTCCTAAATTGAATTAAAGTT--TGTTTGAGTGTAACAAATTAAGCATATTCATACTAT
** * * *
48990294 CTTAAATTTCATTAAGTTGTTGTTTAATGTTTCAAATTGAGTATTATT
63 CTTAAATTGAATCAAGCTGTTGTTTAATGTTTCAAATTGAGCATTATT
* * * **
48990342 ATGCTGTCCTAAATTAAATTAAAGTGTTGCTTCA-TGTCTCAAATTAAGCAT
1 ATGCTGTCCTAAATTGAATTAAAGT-TTGTTTGAGTGTAACAAATTAAGCAT
48990393 TATTGTGCTA
Statistics
Matches: 134, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
110 35 0.26
111 6 0.04
112 43 0.32
113 50 0.37
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (110 bp):
ATGCTGTCCTAAATTGAATTAAAGTTTGTTTGAGTGTAACAAATTAAGCATATTCATACTATCTT
AAATTGAATCAAGCTGTTGTTTAATGTTTCAAATTGAGCATTATT
Found at i:48990300 original size:57 final size:57
Alignment explanation
Indices: 48990129--48990393 Score: 235
Period size: 56 Copynumber: 4.8 Consensus size: 57
48990119 CATGCTATCA
* * * * *
48990129 TAAATTGAATTAAA---GTTGTTTGAGTGTTTCAAATTGAGCATATTCATACTATCT
1 TAAATTGAATTAAAGTTGTTGTTTTAGTGTTTCAAATTGAGCATTTTCATTCTGTCC
* * *
48990183 TAAATTGAA-TCAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTTCGTGT-TGTCC
1 TAAATTGAATTAAAGTTGTTGTTTTAGTGTTTCAAATTGAGCATTTTCAT-TCTGTCC
* ** * *
48990239 TAAATTGAATTAAAGTTGGTGTTTTAGTGTAACAAATTAAGCATTTTCATTCTGTCT
1 TAAATTGAATTAAAGTTGTTGTTTTAGTGTTTCAAATTGAGCATTTTCATTCTGTCC
** * * *
48990296 TAAATTTCATT-AAGTTGTTG-TTTAATGTTTCAAATTGAGTATTATT-ATGCTGTCC
1 TAAATTGAATTAAAGTTGTTGTTTTAGTGTTTCAAATTGAGCATT-TTCATTCTGTCC
* * * * *
48990351 TAAATTAAATTAAAG-TGTTGCTTCA-TGTCTCAAATTAAGCATT
1 TAAATTGAATTAAAGTTGTTGTTTTAGTGTTTCAAATTGAGCATT
48990394 ATTGTGCTAT
Statistics
Matches: 171, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.02
54 9 0.05
55 54 0.32
56 59 0.35
57 46 0.27
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.44
Consensus pattern (57 bp):
TAAATTGAATTAAAGTTGTTGTTTTAGTGTTTCAAATTGAGCATTTTCATTCTGTCC
Found at i:48990349 original size:55 final size:57
Alignment explanation
Indices: 48990119--48990396 Score: 243
Period size: 55 Copynumber: 5.0 Consensus size: 57
48990109 TTACTGTTTG
* * *
48990119 CATGCTATCATAAATTGAATTAAAGTTG-T-TTGAGTGTTTCAAATTGAGCA-TATT
1 CATGCTGTCCTAAATTGAATTAAAGTTGTTGTTTAGTGTTTCAAATTGAGCATTATT
* * * * *
48990173 CATACTATCTTAAATTGAA-TCAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATT-TT
1 CATGCTGTCCTAAATTGAATTAAAGTTGTTG-TTTAGTGTTTCAAATTGAGCATTATT
* * * ** *
48990229 CGTGTTGTCCTAAATTGAATTAAAGTTGGTGTTTTAGTGTAACAAATTAAGCATT-TT
1 CATGCTGTCCTAAATTGAATTAAAGTTGTTG-TTTAGTGTTTCAAATTGAGCATTATT
* * ** * *
48990286 CATTCTGTCTTAAATTTCATT-AAGTTGTTGTTTAATGTTTCAAATTGAGTATTATT
1 CATGCTGTCCTAAATTGAATTAAAGTTGTTGTTTAGTGTTTCAAATTGAGCATTATT
* * * *
48990342 -ATGCTGTCCTAAATTAAATTAAAG-TGTTGCTTCA-TGTCTCAAATTAAGCATTATT
1 CATGCTGTCCTAAATTGAATTAAAGTTGTTG-TTTAGTGTTTCAAATTGAGCATTATT
48990397 GTGCTATTGA
Statistics
Matches: 180, Mismatches: 36, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
53 6 0.03
54 18 0.10
55 57 0.32
56 52 0.29
57 47 0.26
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (57 bp):
CATGCTGTCCTAAATTGAATTAAAGTTGTTGTTTAGTGTTTCAAATTGAGCATTATT
Found at i:48997825 original size:29 final size:29
Alignment explanation
Indices: 48997792--48997851 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
48997782 ATAACCAAAC
*
48997792 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
48997821 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
48997850 CT
1 CT
48997852 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:48997844 original size:15 final size:15
Alignment explanation
Indices: 48997798--48997845 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
48997788 AAACCTACAA
*
48997798 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
48997813 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
48997827 AAACTTCATATCCAT
1 AAACTTCATATCCAT
48997842 AAAC
1 AAAC
48997846 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:48998082 original size:9 final size:9
Alignment explanation
Indices: 48998068--48998092 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
48998058 GTAAGTTTAA
48998068 AAAAAAACG
1 AAAAAAACG
48998077 AAAAAAACG
1 AAAAAAACG
48998086 AAAAAAA
1 AAAAAAA
48998093 ATTTCAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAACG
Found at i:48998575 original size:30 final size:28
Alignment explanation
Indices: 48998539--48998594 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
48998529 AAGCGAAAAA
* *
48998539 GAAAAAGAGTGTGTGCAAGAAAGTAAAGTT
1 GAAAAAGAGAGTGAGCAA-AAAG-AAAGTT
48998569 GAAAAAGAGAGTGAGCAAAAAGAAAG
1 GAAAAAGAGAGTGAGCAAAAAGAAAG
48998595 CGTAGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.54, C:0.04, G:0.30, T:0.12
Consensus pattern (28 bp):
GAAAAAGAGAGTGAGCAAAAAGAAAGTT
Found at i:49001860 original size:29 final size:29
Alignment explanation
Indices: 49001827--49001886 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
49001817 ATAACCAAAC
*
49001827 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
49001856 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
49001885 CT
1 CT
49001887 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:49001879 original size:15 final size:15
Alignment explanation
Indices: 49001833--49001880 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
49001823 AAACCTACAA
*
49001833 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
49001848 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
49001862 AAACTTCATATCCAT
1 AAACTTCATATCCAT
49001877 AAAC
1 AAAC
49001881 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:49008034 original size:57 final size:56
Alignment explanation
Indices: 49007939--49008080 Score: 196
Period size: 57 Copynumber: 2.5 Consensus size: 56
49007929 TACATTTTAC
*
49007939 AATA-GGATTACCAGTCCAGGCTAAATCCTATCCATAGCATATGCTCTAGAGAGCTT
1 AATATGGATTACCA-TCCGGGCTAAATCCTATCCATAGCATATGCTCTAGAGAGCTT
**
49007995 AATATGGATTACTCATCCGGGCTAAATCCTATCTGTAGCATATGCTCTAGAGAGCTT
1 AATATGGATTAC-CATCCGGGCTAAATCCTATCCATAGCATATGCTCTAGAGAGCTT
* * *
49008052 AATATGAATTACCCGTCCGAGCTAAATCC
1 AATATGGATTA-CCATCCGGGCTAAATCC
49008081 AATTTACAGC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
56 4 0.05
57 70 0.91
58 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (56 bp):
AATATGGATTACCATCCGGGCTAAATCCTATCCATAGCATATGCTCTAGAGAGCTT
Found at i:49008109 original size:57 final size:57
Alignment explanation
Indices: 49007958--49008136 Score: 180
Period size: 57 Copynumber: 3.1 Consensus size: 57
49007948 ACCAGTCCAG
* * * * * * *
49007958 GCTAAATCCTATCCATAGCATATGCTCTAGAGAGCTTAATATGGATTACTCATCCGG
1 GCTAAATCCAATCTACAGCATAAGCTCTAGAGAGCTTAATATGAATTACCCATCCGA
* ** * *
49008015 GCTAAATCCTATCTGTAGCATATGCTCTAGAGAGCTTAATATGAATTACCCGTCCGA
1 GCTAAATCCAATCTACAGCATAAGCTCTAGAGAGCTTAATATGAATTACCCATCCGA
* * * * *
49008072 GCTAAATCCAATTTACAGCCTAAGCTCAAGAGGGCTTAA-ATTAGAATTACCCATCCGT
1 GCTAAATCCAATCTACAGCATAAGCTCTAGAGAGCTTAATA-T-GAATTACCCATCCGA
49008130 GCTAAAT
1 GCTAAAT
49008137 TCTATCTGCA
Statistics
Matches: 104, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
56 1 0.01
57 83 0.80
58 20 0.19
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (57 bp):
GCTAAATCCAATCTACAGCATAAGCTCTAGAGAGCTTAATATGAATTACCCATCCGA
Found at i:49009665 original size:119 final size:120
Alignment explanation
Indices: 49009483--49009705 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
49009473 TCCTCGTTCA
**
49009483 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
49009548 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
49009603 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
49009665 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
49009706 CATTATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:49009705 original size:40 final size:40
Alignment explanation
Indices: 49009481--49009705 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
49009471 GCTCCTCGTT
* *
49009481 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49009521 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49009561 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
49009601 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
49009640 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
49009681 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49009706 CATTATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 4 0.02
39 28 0.17
40 116 0.72
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:49011737 original size:40 final size:40
Alignment explanation
Indices: 49011653--49011915 Score: 304
Period size: 40 Copynumber: 6.7 Consensus size: 40
49011643 TTGAATGATG
* * * * *
49011653 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
49011693 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
49011733 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
49011773 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
49011812 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
49011852 TCCGGGTTAAGTCCCGAAGGCATTTGT-CGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49011892 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
49011916 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
38 13 0.07
39 54 0.27
40 123 0.62
41 8 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49011821 original size:79 final size:79
Alignment explanation
Indices: 49011653--49011915 Score: 279
Period size: 79 Copynumber: 3.3 Consensus size: 79
49011643 TTGAATGATG
* * * *
49011653 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAGACCCGAAGG-C
* * * *
49011715 TTTGTGCGAGATACTAAT
62 ATTGTGTGAGTTACTAAA
*
49011733 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATT-
49011797 GTGTGAGTTACTAAA
65 GTGTGAGTTACTAAA
* * * * *
49011812 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTG
49011876 TGTCGAGTTACTATAA
66 TGT-GAGTTACTA-AA
*
49011892 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49011916 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
78 19 0.12
79 85 0.52
80 46 0.28
81 11 0.07
82 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTG
TGTGAGTTACTAAA
Found at i:49011876 original size:119 final size:119
Alignment explanation
Indices: 49011653--49011913 Score: 332
Period size: 119 Copynumber: 2.2 Consensus size: 119
49011643 TTGAATGATG
* * *
49011653 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
49011717 TGTGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
65 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT-CGAGATACTATA
* * * **
49011772 TTCCGGGCTAAGCCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
49011835 TTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTCGAGTTACTATA
64 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTCGAGATACTATA
* * *
49011891 ACCGGGCTATGTCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATT
49011914 TGAACGAGGA
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
118 30 0.24
119 78 0.63
120 16 0.13
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTCGAGATACTATA
Found at i:49012278 original size:17 final size:17
Alignment explanation
Indices: 49012256--49012295 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
49012246 CTAAGCATAA
49012256 ATTGCTTACTCCGTTTC
1 ATTGCTTACTCCGTTTC
49012273 ATTGCTTACTCCGTTTC
1 ATTGCTTACTCCGTTTC
49012290 ATTGCT
1 ATTGCT
49012296 CCTCAGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.12, C:0.28, G:0.12, T:0.47
Consensus pattern (17 bp):
ATTGCTTACTCCGTTTC
Found at i:49020084 original size:119 final size:120
Alignment explanation
Indices: 49019902--49020125 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 120
49019892 TCCTCGTTCA
*
49019902 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
49019967 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
49020022 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
49020084 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAT
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGAT
49020126 ATTATTCAAT
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:49020124 original size:40 final size:40
Alignment explanation
Indices: 49019900--49020127 Score: 293
Period size: 40 Copynumber: 5.7 Consensus size: 40
49019890 GCTCCTCGTT
* *
49019900 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49019940 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49019980 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49020020 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
49020059 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
49020100 CAAA-GCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
49020128 TATTCAATTA
Statistics
Matches: 167, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 122 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:49029888 original size:43 final size:43
Alignment explanation
Indices: 49029841--49029985 Score: 127
Period size: 43 Copynumber: 3.4 Consensus size: 43
49029831 GATTACAACC
* *
49029841 AAGACCATCTCTGGGACATTGGCATTGTATTATGATTAAGTGT
1 AAGACCATGTCTGGGACATTGGCATCGTATTATGATTAAGTGT
* * * *
49029884 AAGACCATGTGTTGGACATTGGCATCGCTA-TATGAATT-CGTAT
1 AAGACCATGTCTGGGACATTGGCATCG-TATTATG-ATTAAGTGT
* * * *
49029927 AAGACCCTGTCTGGGACAGTGGCATCG-ATATGTGA-TAACATGT
1 AAGACCATGTCTGGGACATTGGCATCGTAT-TATGATTAA-GTGT
*
49029970 AAGACCATATCTGGGA
1 AAGACCATGTCTGGGA
49029986 TAAGGCATTG
Statistics
Matches: 80, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
41 2 0.03
42 1 0.01
43 72 0.90
44 5 0.06
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGTATTATGATTAAGTGT
Found at i:49034346 original size:64 final size:64
Alignment explanation
Indices: 49034241--49034448 Score: 197
Period size: 67 Copynumber: 3.2 Consensus size: 64
49034231 CATCATGTGT
* *
49034241 ACAAGAAAGCTACGAGACATTATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TA-AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
49034306 TAG
62 TAG
* * * * * * * *
49034309 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACAATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
49034374 AG
63 AG
* * *
49034376 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATAAA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
49034438 TACAAGAGAGC
1 -ACAAGAGAGC
49034449 CGAACTATAT
Statistics
Matches: 114, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 25 0.22
65 2 0.02
66 22 0.19
67 30 0.26
68 16 0.14
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:49034781 original size:28 final size:27
Alignment explanation
Indices: 49034741--49034895 Score: 127
Period size: 28 Copynumber: 5.6 Consensus size: 27
49034731 CCAAACGAAC
*
49034741 GGCACTTAGTGTGCGAAGTATTGAGGAT
1 GGCACTTAGTGTGCGAAGTATCGA-GAT
* *
49034769 GGCACTTAGTGTGC-AAGACATCCGAAAT
1 GGCACTTAGTGTGCGAAG-TAT-CGAGAT
* ** *
49034797 GACAC--AGTGTATGAAGTATTGATGAT
1 GGCACTTAGTGTGCGAAGTATCGA-GAT
* ** *
49034823 GACACTTAGTGTGCGAAACATCCGAAAT
1 GGCACTTAGTGTGCGAAGTAT-CGAGAT
*
49034851 GGCACTTAGAGTGCGAAGTATCGAGGAT
1 GGCACTTAGTGTGCGAAGTATCGA-GAT
49034879 GGCACTTAGTGTGCGAA
1 GGCACTTAGTGTGCGAA
49034896 ACATCCGGTA
Statistics
Matches: 98, Mismatches: 21, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
25 2 0.02
26 14 0.14
27 9 0.09
28 69 0.70
29 4 0.04
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (27 bp):
GGCACTTAGTGTGCGAAGTATCGAGAT
Found at i:49034813 original size:54 final size:55
Alignment explanation
Indices: 49034754--49034902 Score: 203
Period size: 54 Copynumber: 2.7 Consensus size: 55
49034744 ACTTAGTGTG
*
49034754 CGAAGTATTGAGGATGGCACTTAGTGTGC-AAGACATCCGAAATGACAC-AGTGTA
1 CGAAGTATTGAGGATGGCACTTAGTGTGCGAA-ACATCCGAAATGACACTAGAGTA
* * * * *
49034808 TGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAATGGCACTTAGAGTG
1 CGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAATGACAC-TAGAGTA
*
49034864 CGAAGTATCGAGGATGGCACTTAGTGTGCGAAACATCCG
1 CGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCG
49034903 GTATAGCACT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
54 41 0.50
55 2 0.02
56 39 0.48
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (55 bp):
CGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAATGACACTAGAGTA
Found at i:49034890 original size:56 final size:56
Alignment explanation
Indices: 49034741--49034920 Score: 231
Period size: 56 Copynumber: 3.2 Consensus size: 56
49034731 CCAAACGAAC
49034741 GGCACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAGACATCCGAAAT
1 GGCACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAA-ACATCCGAAAT
* ** * *
49034797 GACAC--AGTGTATGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAAT
1 GGCACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAAT
* * **
49034851 GGCACTTAGAGTGCGAAGTATCGAGGATGGCACTTAGTGTGCGAAACATCCGGTAT
1 GGCACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAAT
* *
49034907 AGCACTTAGCGTGC
1 GGCACTTAGTGTGC
49034921 AAGACATCGA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
54 46 0.44
55 2 0.02
56 57 0.54
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (56 bp):
GGCACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAAT
Found at i:49034911 original size:28 final size:28
Alignment explanation
Indices: 49034825--49034928 Score: 104
Period size: 28 Copynumber: 3.7 Consensus size: 28
49034815 TTGATGATGA
*
49034825 CACTTAGTGTGCGAAACATCCGAAATGG
1 CACTTAGTGTGCGAAACATCCGGAATGG
* ** *
49034853 CACTTAGAGTGCGAAGTAT-CGAGGATGG
1 CACTTAGTGTGCGAAACATCCG-GAATGG
* *
49034881 CACTTAGTGTGCGAAACATCCGGTATAG
1 CACTTAGTGTGCGAAACATCCGGAATGG
*
49034909 CACTTAGCGTGC-AAGACATC
1 CACTTAGTGTGCGAA-ACATC
49034929 GATTGTGCAG
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 4 0.06
28 56 0.90
29 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCCGGAATGG
Found at i:49039251 original size:15 final size:15
Alignment explanation
Indices: 49039231--49039274 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
49039221 AAAGCCCAGA
49039231 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
49039246 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
49039261 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
49039275 ATTACAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49055179 original size:39 final size:40
Alignment explanation
Indices: 49055062--49055282 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
49055052 GCTACTCGTT
* *
49055062 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
49055102 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
49055142 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
49055181 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
49055220 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
49055261 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
49055283 AGACATCATT
Statistics
Matches: 164, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 75 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:49055179 original size:79 final size:79
Alignment explanation
Indices: 49055062--49055278 Score: 262
Period size: 79 Copynumber: 2.7 Consensus size: 79
49055052 GCTACTCGTT
*
49055062 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGG
*
49055127 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
49055142 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGG
*
49055205 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
49055220 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGG-CTTA
49055279 GCCCAGACAT
Statistics
Matches: 120, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
77 2 0.02
78 34 0.28
79 57 0.47
80 27 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGA
ATTAGTAACTCGCA
Found at i:49059066 original size:43 final size:43
Alignment explanation
Indices: 49058977--49059116 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 43
49058967 TGTGATTACA
* * **
49058977 TGTAAAACCATGTTTGGGACATTGGCATTGTCTTGTGATTATG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTCTAATGATTATG
49059020 TGTAAGACCATGTTTGGGACATTGGCATCGT-TAATCGATT-TCG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTCTAAT-GATTAT-G
* * * * * * * *
49059063 TGTAAGACCCTGTCTAGGACAGTGACATCG-ATATGTGATTATA
1 TGTAAGACCATGTTTGGGACATTGGCATCGTCTA-ATGATTATG
49059106 TGTAAGACCAT
1 TGTAAGACCAT
49059117 ATCTGGGATA
Statistics
Matches: 80, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
42 3 0.04
43 75 0.94
44 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGTCTAATGATTATG
Found at i:49066676 original size:10 final size:10
Alignment explanation
Indices: 49066661--49066741 Score: 76
Period size: 10 Copynumber: 7.9 Consensus size: 10
49066651 AATTTTAGCT
49066661 TTTATCTTTA
1 TTTATCTTTA
*
49066671 TTTATC-CTA
1 TTTATCTTTA
49066680 GCTTTTATCTTTA
1 ---TTTATCTTTA
*
49066693 TTTATCCTTA
1 TTTATCTTTA
49066703 TTTATCTTTA
1 TTTATCTTTA
* *
49066713 ATAATCTTTA
1 TTTATCTTTA
49066723 TTTAT-TTGTA
1 TTTATCTT-TA
49066733 TTTATCTTT
1 TTTATCTTT
49066742 TAGAATTTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
9 4 0.07
10 43 0.75
11 2 0.04
12 6 0.11
13 2 0.04
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:49066684 original size:22 final size:22
Alignment explanation
Indices: 49066656--49066700 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
49066646 GATTTAATTT
49066656 TAGCTTTTATCTTTATTTATCC
1 TAGCTTTTATCTTTATTTATCC
49066678 TAGCTTTTATCTTTATTTATCC
1 TAGCTTTTATCTTTATTTATCC
49066700 T
1 T
49066701 TATTTATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.60
Consensus pattern (22 bp):
TAGCTTTTATCTTTATTTATCC
Found at i:49068344 original size:40 final size:40
Alignment explanation
Indices: 49068282--49068459 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
49068272 AAGCCAAGTA
* * * *
49068282 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
49068321 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
49068361 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
49068401 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
49068441 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
49068460 TTATCATCCG
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:49074739 original size:46 final size:41
Alignment explanation
Indices: 49074662--49074745 Score: 114
Period size: 45 Copynumber: 1.9 Consensus size: 41
49074652 AATATGATTT
*
49074662 ATATATTTAAATTAAAATTTTAAAAAATATTTAATAATTTTC
1 ATATATTTAAATTAAAAATTTAAAAAATATTTAA-AATTTTC
49074704 ATATATTGTAATATTAATAAATTTAAAAAATTATTTAAAATT
1 ATATATT-TAA-ATTAA-AAATTTAAAAAA-TATTTAAAATT
49074746 ATTTATTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
42 7 0.19
43 3 0.08
44 5 0.14
45 15 0.41
46 7 0.19
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (41 bp):
ATATATTTAAATTAAAAATTTAAAAAATATTTAAAATTTTC
Found at i:49079235 original size:21 final size:21
Alignment explanation
Indices: 49079209--49079249 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
49079199 CATATAAGAG
49079209 TATAA-TAAAATATTAAAAATA
1 TATAATTAAAA-ATTAAAAATA
49079230 TATAATTAAAAATTAAAAAT
1 TATAATTAAAAATTAAAAAT
49079250 TAATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
TATAATTAAAAATTAAAAATA
Found at i:49079282 original size:26 final size:26
Alignment explanation
Indices: 49079228--49079282 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
49079218 ATATTAAAAA
*
49079228 TATATAATTAAAAATTAAAAATTAAT
1 TATATAATTAAAAATTAAAAAATAAT
* *
49079254 TATATAA-TAAATATTAATAAAATATT
1 TATATAATTAAAAATTAA-AAAATAAT
49079280 TAT
1 TAT
49079283 CTCTTTTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TATATAATTAAAAATTAAAAAATAAT
Found at i:49079752 original size:3 final size:3
Alignment explanation
Indices: 49079744--49079773 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
49079734 CCCAATTTGG
49079744 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
49079774 GCCTTCTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:49080001 original size:57 final size:57
Alignment explanation
Indices: 49079935--49080048 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
49079925 ATTATTCATG
49079935 CTTTTTCATTATACGTTAAATTAGACATATAAGTCATTTTTAAAAAAAATTAGGGAA
1 CTTTTTCATTATACGTTAAATTAGACATATAAGTCATTTTTAAAAAAAATTAGGGAA
*
49079992 CTTTTTCATTATACGTTAAATTAGACATATAAGTCATTTTTAAAAGAAATTAGGGAA
1 CTTTTTCATTATACGTTAAATTAGACATATAAGTCATTTTTAAAAAAAATTAGGGAA
49080049 ATGGAATATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (57 bp):
CTTTTTCATTATACGTTAAATTAGACATATAAGTCATTTTTAAAAAAAATTAGGGAA
Found at i:49088634 original size:48 final size:48
Alignment explanation
Indices: 49088547--49088670 Score: 117
Period size: 48 Copynumber: 2.6 Consensus size: 48
49088537 ATTCCACAAA
* * * * *
49088547 AATATTATTTTAATAGTTTAATATTTTATTTTATTTAATACTTA-TCTG
1 AATATTATTTTATTAATTTAATA-TTAATTTAATCTAATACTTATTCTG
* *
49088595 AATATTATTTTATTAATTTAATATTAACTTTAATCTAATATTTATTTTG
1 AATATTATTTTATTAATTTAATATTAA-TTTAATCTAATACTTATTCTG
* * *
49088644 -TTAACTATTATATTAATTTAATATTAA
1 AAT-ATTATTTTATTAATTTAATATTAA
49088671 AGTGATTATG
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.05
48 35 0.56
49 25 0.40
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.56
Consensus pattern (48 bp):
AATATTATTTTATTAATTTAATATTAATTTAATCTAATACTTATTCTG
Found at i:49088664 original size:37 final size:37
Alignment explanation
Indices: 49088590--49088665 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
49088580 TTTAATACTT
49088590 ATCTGAATATTATTTTATTAATTTAATATTAACTTTA
1 ATCTGAATATTATTTTATTAATTTAATATTAACTTTA
*
49088627 ATCT-AATATTTATTTTGTTAACTATT-ATATTAA-TTTA
1 ATCTGAATA-TTATTTTATTAA-T-TTAATATTAACTTTA
49088664 AT
1 AT
49088666 ATTAAAGTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 21 0.60
38 8 0.23
39 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (37 bp):
ATCTGAATATTATTTTATTAATTTAATATTAACTTTA
Found at i:49091407 original size:33 final size:33
Alignment explanation
Indices: 49091369--49091431 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
49091359 AGTTTAGATC
* *
49091369 ATTTCATATCATAACTTTACTCATATTAATTGG
1 ATTTCATATAAGAACTTTACTCATATTAATTGG
49091402 ATTTCATATAAGAACTTTACTCATATTAAT
1 ATTTCATATAAGAACTTTACTCATATTAAT
49091432 CGGAATATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (33 bp):
ATTTCATATAAGAACTTTACTCATATTAATTGG
Found at i:49104334 original size:46 final size:45
Alignment explanation
Indices: 49104233--49104399 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 45
49104223 GGTTATTGTG
* * *
49104233 AGCTAGTGTAAGACCATGTCAGGGACATGGCATCGGCATTGAGACG-A
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATC-GCCTCGAGA-GTA
49104280 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGAGA-GTA
*
49104327 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGA-TA
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGCCT-CGAGAGTA
*
49104371 AGCCAGTGTAAGACCATGTCTGGGACATG
1 AGCTAGTGTAAGACCATGTCTGGGACATG
49104400 GTATCGGCAT
Statistics
Matches: 109, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
44 14 0.13
45 18 0.17
46 50 0.46
47 14 0.13
48 13 0.12
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.22
Consensus pattern (45 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGCCTCGAGAGTA
Found at i:49105548 original size:21 final size:22
Alignment explanation
Indices: 49105509--49105549 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49105499 GTCGAATCGT
49105509 CACACAGGCGTGTTGCCCCTCC
1 CACACAGGCGTGTTGCCCCTCC
*
49105531 CACACGGGCGTG-TGCCCCT
1 CACACAGGCGTGTTGCCCCT
49105550 ATGTCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACAGGCGTGTTGCCCCTCC
Found at i:49107203 original size:20 final size:20
Alignment explanation
Indices: 49107174--49107218 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
49107164 AGCACATGTA
*
49107174 TTCATAAAATTTCATAATTT
1 TTCATAAAATTTCATAACTT
* *
49107194 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTCATAACTT
49107214 TTCAT
1 TTCAT
49107219 TTTAGTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTCATAACTT
Found at i:49107557 original size:15 final size:16
Alignment explanation
Indices: 49107528--49107562 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
49107518 GTTTTCTTTT
49107528 TCATTTAATTAACTTG
1 TCATTTAATTAACTTG
*
49107544 TCATTTAA-TAACTTT
1 TCATTTAATTAACTTG
49107559 TCAT
1 TCAT
49107563 CTTTCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.51
Consensus pattern (16 bp):
TCATTTAATTAACTTG
Found at i:49110816 original size:21 final size:21
Alignment explanation
Indices: 49110790--49110833 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
49110780 ACACACTCAG
49110790 CTTAATTGAGCT-ATTAAAGAA
1 CTTAATTGAGCTAATTAAA-AA
49110811 CTTAATTGAGCTAATTAAAAA
1 CTTAATTGAGCTAATTAAAAA
49110832 CT
1 CT
49110834 ACAAGACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (21 bp):
CTTAATTGAGCTAATTAAAAA
Found at i:49111390 original size:18 final size:19
Alignment explanation
Indices: 49111353--49111391 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
49111343 AAATTTATTT
*
49111353 AAACAACTAAATTGAGTTA
1 AAACAACTAAATTGACTTA
*
49111372 AAACAACTTAATT-ACTTA
1 AAACAACTAAATTGACTTA
49111390 AA
1 AA
49111392 CTAAAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.28
Consensus pattern (19 bp):
AAACAACTAAATTGACTTA
Found at i:49115426 original size:25 final size:25
Alignment explanation
Indices: 49115393--49115446 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
49115383 TCTCTCACCG
* * *
49115393 AAAACGACTTATTTTCCTAATTTAA
1 AAAACGACTTATATGCCAAATTTAA
*
49115418 AAAATGACTTATATGCCAAATTTAA
1 AAAACGACTTATATGCCAAATTTAA
49115443 AAAA
1 AAAA
49115447 AAAGGCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (25 bp):
AAAACGACTTATATGCCAAATTTAA
Found at i:49116984 original size:9 final size:9
Alignment explanation
Indices: 49116970--49117096 Score: 50
Period size: 10 Copynumber: 13.7 Consensus size: 9
49116960 GTCACATGTG
49116970 ATAAAAATT
1 ATAAAAATT
49116979 ATAAAAA--
1 ATAAAAATT
*
49116986 AT-AAAATCA
1 ATAAAAAT-T
49116995 ATAAAAATT
1 ATAAAAATT
*
49117004 AT-TAAATGT
1 ATAAAAAT-T
*
49117013 -TAATAAAAT
1 ATAA-AAATT
49117022 ATAAAAAATTT
1 AT-AAAAA-TT
49117033 ATAAAAATCGT
1 ATAAAAAT--T
49117044 A-AAAAATAT
1 ATAAAAAT-T
*
49117053 AAAAAAATT
1 ATAAAAATT
* * *
49117062 GTAAGATTT
1 ATAAAAATT
*
49117071 ATAAAAATC
1 ATAAAAATT
49117080 ATAGAAAAGTT
1 ATA-AAAA-TT
49117091 ATAAAA
1 ATAAAA
49117097 TGCATCAAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 29
0.67 0.11 0.22
Matches are distributed among these distances:
6 4 0.05
7 2 0.02
8 5 0.06
9 30 0.34
10 36 0.41
11 11 0.12
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (9 bp):
ATAAAAATT
Found at i:49117046 original size:20 final size:20
Alignment explanation
Indices: 49117023--49117096 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
49117013 TAATAAAATA
49117023 TAAAAAATTTATAAAAATCG
1 TAAAAAATTTATAAAAATCG
* * *
49117043 TAAAAAATATAAAAAAATTG
1 TAAAAAATTTATAAAAATCG
* *
49117063 T--AAGATTTATAAAAATCA
1 TAAAAAATTTATAAAAATCG
* *
49117081 TAGAAAAGTTATAAAA
1 TAAAAAATTTATAAAA
49117097 TGCATCAAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
18 13 0.31
20 29 0.69
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (20 bp):
TAAAAAATTTATAAAAATCG
Found at i:49117333 original size:9 final size:9
Alignment explanation
Indices: 49117321--49117406 Score: 70
Period size: 9 Copynumber: 9.4 Consensus size: 9
49117311 TTCTTTACAT
49117321 TTTTTATAA
1 TTTTTATAA
*
49117330 TTTTGTATGA
1 TTTT-TATAA
*
49117340 -CTTTATAAA
1 TTTTTAT-AA
*
49117349 ATTTTATAA
1 TTTTTATAA
49117358 TTTTTAT-A
1 TTTTTATAA
49117366 TTTTTAT-A
1 TTTTTATAA
49117374 TATTTTATAA
1 T-TTTTATAA
*
49117384 TTTTTATGA
1 TTTTTATAA
*
49117393 TTTTATAAAA
1 TTTT-TATAA
49117403 TTTT
1 TTTT
49117407 ACATTTTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
8 13 0.21
9 32 0.51
10 18 0.29
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:49117406 original size:18 final size:18
Alignment explanation
Indices: 49117322--49117407 Score: 79
Period size: 18 Copynumber: 4.8 Consensus size: 18
49117312 TCTTTACATT
49117322 TTTTAT-AATTTTGTATGA
1 TTTTATAAATTTT-TATGA
* * *
49117340 CTTTATAAAATTTTATAA
1 TTTTATAAATTTTTATGA
* *
49117358 TTTT-TATATTTTTATATA
1 TTTTATAAATTTTTAT-GA
49117376 TTTTAT-AATTTTTATGA
1 TTTTATAAATTTTTATGA
*
49117393 TTTTATAAAATTTTA
1 TTTTATAAATTTTTA
49117408 CATTTTTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
17 16 0.30
18 32 0.59
19 6 0.11
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTATAAATTTTTATGA
Found at i:49117414 original size:26 final size:27
Alignment explanation
Indices: 49117322--49117407 Score: 122
Period size: 26 Copynumber: 3.2 Consensus size: 27
49117312 TCTTTACATT
*
49117322 TTTTATAATTTTGTATGACTTTATAAAA
1 TTTTATAATTTT-TATGATTTTATAAAA
*
49117350 TTTTATAATTTTTAT-ATTTT-TATATA
1 TTTTATAATTTTTATGATTTTATA-AAA
49117376 TTTTATAATTTTTATGATTTTATAAAA
1 TTTTATAATTTTTATGATTTTATAAAA
49117403 TTTTA
1 TTTTA
49117408 CATTTTTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.04
26 21 0.40
27 15 0.29
28 14 0.27
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTATAATTTTTATGATTTTATAAAA
Found at i:49121498 original size:23 final size:23
Alignment explanation
Indices: 49121472--49121542 Score: 133
Period size: 23 Copynumber: 3.0 Consensus size: 23
49121462 TTAAGGTAGC
49121472 TAAGGGTTAAATTAGCGACGGTA
1 TAAGGGTTAAATTAGCGACGGTA
49121495 TAAGGGTTAAATTAGCGACGGTA
1 TAAGGGTTAAATTAGCGACGGTA
49121518 TTAAGGGTTAAATTAGCGACGGTA
1 -TAAGGGTTAAATTAGCGACGGTA
49121542 T
1 T
49121543 TAAACGGTAC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
23 24 0.51
24 23 0.49
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (23 bp):
TAAGGGTTAAATTAGCGACGGTA
Found at i:49121558 original size:24 final size:24
Alignment explanation
Indices: 49121472--49121545 Score: 141
Period size: 24 Copynumber: 3.1 Consensus size: 24
49121462 TTAAGGTAGC
49121472 TAAGGGTTAAATTAGCGACGGTA-
1 TAAGGGTTAAATTAGCGACGGTAT
49121495 TAAGGGTTAAATTAGCGACGGTAT
1 TAAGGGTTAAATTAGCGACGGTAT
49121519 TAAGGGTTAAATTAGCGACGGTAT
1 TAAGGGTTAAATTAGCGACGGTAT
49121543 TAA
1 TAA
49121546 ACGGTACATT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 23 0.46
24 27 0.54
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.28
Consensus pattern (24 bp):
TAAGGGTTAAATTAGCGACGGTAT
Found at i:49121864 original size:5 final size:5
Alignment explanation
Indices: 49121856--49121880 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
49121846 AACTTTTATT
49121856 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
49121881 CTTAGTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:49122615 original size:8 final size:8
Alignment explanation
Indices: 49122604--49122635 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
49122594 TTTAATAAGA
49122604 TATTTTAT
1 TATTTTAT
49122612 TA-TTTAT
1 TATTTTAT
49122619 TATTTTAT
1 TATTTTAT
49122627 TATTTTAT
1 TATTTTAT
49122635 T
1 T
49122636 TAGTCTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TATTTTAT
Found at i:49126243 original size:20 final size:20
Alignment explanation
Indices: 49126204--49126244 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
49126194 AGGAACTATC
* * *
49126204 CTAGAATTAGGGGATTACAA
1 CTAGAATTAGAGAATCACAA
49126224 CTAGAATTAGAGAATCACAA
1 CTAGAATTAGAGAATCACAA
49126244 C
1 C
49126245 AAATTATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.22
Consensus pattern (20 bp):
CTAGAATTAGAGAATCACAA
Found at i:49133464 original size:28 final size:28
Alignment explanation
Indices: 49133405--49133479 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
49133395 TCAAATATGG
* * *
49133405 CACTCAGTGTACGAAATATTGAGAAAGG
1 CACTCAGTGTGCGAGATATTGAGAAAGA
* *
49133433 CACTGAGTGTGCGAGATATTGAGAATGA
1 CACTCAGTGTGCGAGATATTGAGAAAGA
*
49133461 CACTTAGTGTGCGAGATAT
1 CACTCAGTGTGCGAGATAT
49133480 CAAATGATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (28 bp):
CACTCAGTGTGCGAGATATTGAGAAAGA
Found at i:49133919 original size:25 final size:25
Alignment explanation
Indices: 49133869--49133919 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
49133859 AAGGTAAGTA
*
49133869 TATGTGCAAAGAATATATTGTGATG
1 TATGTGCAAAGAATATATGGTGATG
* *
49133894 TATGTGGAAATGAA-ATATGGTTATG
1 TATGTGCAAA-GAATATATGGTGATG
49133919 T
1 T
49133920 GCCAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.37
Consensus pattern (25 bp):
TATGTGCAAAGAATATATGGTGATG
Done.