Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 157 of 325
Found at i:49731711 original size:30 final size:30
Alignment explanation
Indices: 49731675--49731789 Score: 194
Period size: 30 Copynumber: 3.8 Consensus size: 30
49731665 ATCCATATTT
*
49731675 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
49731705 ATGGAAAGTCAAAGATATGTGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
49731735 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
49731765 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
49731790 GAGATATTGG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:49736395 original size:15 final size:15
Alignment explanation
Indices: 49736375--49736482 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
49736365 TTTATGGAAA
49736375 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
49736390 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
49736404 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
49736420 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
49736434 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
49736450 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
49736464 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
49736480 ATC
1 ATC
49736483 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:49736404 original size:30 final size:30
Alignment explanation
Indices: 49736368--49736482 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
49736358 ATCCATATTT
*
49736368 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
49736398 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
49736428 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
49736458 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
49736483 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:49737218 original size:11 final size:11
Alignment explanation
Indices: 49737204--49737235 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
49737194 GAAAAGGAGC
49737204 AAAAAAAGAAA
1 AAAAAAAGAAA
49737215 AAAAAAAG-AA
1 AAAAAAAGAAA
49737225 AAAAAAAGAAA
1 AAAAAAAGAAA
49737236 CAGTAGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:49737391 original size:7 final size:7
Alignment explanation
Indices: 49737370--49737404 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
49737360 TCTTTCATTT
49737370 AAAA-AA
1 AAAAGAA
49737376 AAAAG-A
1 AAAAGAA
49737382 AAAAGAA
1 AAAAGAA
49737389 AAAAGAA
1 AAAAGAA
49737396 AAAAGAA
1 AAAAGAA
49737403 AA
1 AA
49737405 GGTGTTGGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 10 0.37
7 17 0.63
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:49737392 original size:14 final size:15
Alignment explanation
Indices: 49737373--49737404 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
49737363 TTCATTTAAA
49737373 AAAAAAAG-AAAAAG
1 AAAAAAAGAAAAAAG
49737387 -AAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
49737401 AAAA
1 AAAA
49737405 GGTGTTGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.44
14 6 0.38
15 3 0.19
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:49741622 original size:46 final size:46
Alignment explanation
Indices: 49741572--49741747 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
49741562 TGATTGAGCA
49741572 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49741618 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
49741663 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49741711 -CCTGAGCTCGTTAAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49741748 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:49741728 original size:93 final size:93
Alignment explanation
Indices: 49741569--49741740 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
49741559 GGATGATTGA
* *
49741569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTAAGT
49741634 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
49741662 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTAAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTAAG
49741726 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
49741741 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:49743580 original size:39 final size:39
Alignment explanation
Indices: 49743520--49743674 Score: 231
Period size: 39 Copynumber: 4.0 Consensus size: 39
49743510 TTATATTACC
* *
49743520 AGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCT
1 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCT
* * *
49743559 TGCACGAAGCCTACGGGACTTTAGCCTGGATACATTTCC
1 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCT
49743598 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT-T
1 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCT
* *
49743636 CAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 -AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
49743675 CAGTATCTTG
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCT
Found at i:49746172 original size:20 final size:20
Alignment explanation
Indices: 49746130--49746179 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
49746120 ATAAATTGGA
* *
49746130 ATCAAGCTCAATTAGCTAGC
1 ATCAAGCTGAATTAGCTACC
49746150 ATCAAGCTGAATTAAGCT-CC
1 ATCAAGCTGAATT-AGCTACC
*
49746170 ATCGAGCTGA
1 ATCAAGCTGA
49746180 GTCGAGTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCAAGCTGAATTAGCTACC
Found at i:49747391 original size:16 final size:14
Alignment explanation
Indices: 49747358--49747414 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 14
49747348 ATCAATATTT
*
49747358 TAAAAAATAAATAT
1 TAAAAAATAAATAA
49747372 TAAAAAATTAAATTAA
1 TAAAAAA-TAAA-TAA
*
49747388 TAAAAAGATATATACA
1 TAAAAA-ATAAATA-A
*
49747404 TATAAAATAAA
1 TAAAAAATAAA
49747415 CTTTGACAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
14 7 0.20
15 10 0.29
16 17 0.49
17 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (14 bp):
TAAAAAATAAATAA
Found at i:49747576 original size:16 final size:16
Alignment explanation
Indices: 49747555--49747587 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
49747545 GAAAAAATTT
49747555 AATAATTTATAAAAAC
1 AATAATTTATAAAAAC
*
49747571 AATAATTTATTAAAAC
1 AATAATTTATAAAAAC
49747587 A
1 A
49747588 TAAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAATTTATAAAAAC
Found at i:49749180 original size:29 final size:29
Alignment explanation
Indices: 49749137--49749193 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
49749127 TGTTTTTTGG
*
49749137 TTGGTTTGCTAACTAACCGAAAAACTTAC
1 TTGGTTTGCTAACTAACCAAAAAACTTAC
*
49749166 TTGGTTTGCTGACTAACCAAAAAACTTA
1 TTGGTTTGCTAACTAACCAAAAAACTTA
49749194 GGTAACGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (29 bp):
TTGGTTTGCTAACTAACCAAAAAACTTAC
Found at i:49752714 original size:18 final size:18
Alignment explanation
Indices: 49752691--49752736 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
49752681 AGGGAAATCA
49752691 CATTTA-TCTATCGATTTT
1 CATTTATTC-ATCGATTTT
49752709 CATTTATTCATCGATTTT
1 CATTTATTCATCGATTTT
49752727 CATTTATTCA
1 CATTTATTCA
49752737 AACGGGACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 25 0.93
19 2 0.07
ACGTcount: A:0.24, C:0.17, G:0.04, T:0.54
Consensus pattern (18 bp):
CATTTATTCATCGATTTT
Found at i:49753148 original size:21 final size:21
Alignment explanation
Indices: 49753104--49753151 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
49753094 TATACGAGTA
*
49753104 AATTTAAAATCAATTTAATAC
1 AATTTAAAATCAATTCAATAC
* * *
49753125 AATTTAAACTCAATTCAGTCC
1 AATTTAAAATCAATTCAATAC
49753146 AATTTA
1 AATTTA
49753152 CATCTTAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.38
Consensus pattern (21 bp):
AATTTAAAATCAATTCAATAC
Found at i:49754845 original size:40 final size:40
Alignment explanation
Indices: 49754801--49754881 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
49754791 CCGCAAGTTT
* *
49754801 TGTACTTTTTGAAAATTTAGCCCTTCATATTTACAAATTC
1 TGTACTTTTTGAAAATTTAACCCTCCATATTTACAAATTC
49754841 TGTACTTTTTGAAAATTTAACCCTCCATATTTACAAATTC
1 TGTACTTTTTGAAAATTTAACCCTCCATATTTACAAATTC
49754881 T
1 T
49754882 ATCAATTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (40 bp):
TGTACTTTTTGAAAATTTAACCCTCCATATTTACAAATTC
Found at i:49775159 original size:20 final size:20
Alignment explanation
Indices: 49775122--49775159 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49775112 CCAGTCCATT
*
49775122 CCCAAAATCGGATCAAACTC
1 CCCAAAATCAGATCAAACTC
*
49775142 CCCAAAATCAGATGAAAC
1 CCCAAAATCAGATCAAAC
49775160 CTCTTCGCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.32, G:0.11, T:0.13
Consensus pattern (20 bp):
CCCAAAATCAGATCAAACTC
Found at i:49779697 original size:42 final size:42
Alignment explanation
Indices: 49779632--49779786 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
49779622 GGTTACTAGT
* **
49779632 GTGTAAGACCATATCTGGTATATGGCATTTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTC
*
49779674 GTGTAAGACCATATTTGGGATATGGCATCAATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTC
* * *
49779716 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGA-TTAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATATGAGACTT-C
* **
49779759 ATGTAAGATTATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
49779787 TGGTACGATA
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
42 65 0.66
43 33 0.34
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTC
Found at i:49779778 original size:85 final size:84
Alignment explanation
Indices: 49779632--49779786 Score: 206
Period size: 85 Copynumber: 1.8 Consensus size: 84
49779622 GGTTACTAGT
* ** * *
49779632 GTGTAAGACCATATCTGGTATATGGCATTTATATGAGACTTCGTGTAAGACCATATTTGGGATAT
1 GTGTAAGACCATAGCTGGTATATGGCATCGATATGAGACTTCATGTAAGACCATATCTGGGATAT
49779697 GGCATCAATATGAGACTTC
66 GGCATCAATATGAGACTTC
**
49779716 GTGTAAGACCATAGCTGGGCTAT-TGGCATCGATATGAGA-TTACATGTAAGATTATATCTGGGA
1 GTGTAAGACCATAGCT-GG-TATATGGCATCGATATGAGACTT-CATGTAAGACCATATCTGGGA
49779779 TATGGCAT
63 TATGGCAT
49779787 TGGTACGATA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
84 17 0.28
85 41 0.67
86 3 0.05
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (84 bp):
GTGTAAGACCATAGCTGGTATATGGCATCGATATGAGACTTCATGTAAGACCATATCTGGGATAT
GGCATCAATATGAGACTTC
Found at i:49784151 original size:26 final size:26
Alignment explanation
Indices: 49784120--49784178 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
49784110 TGAATGGTCC
*
49784120 GTTGAATGTTAGTAAAGTTGAAAATA
1 GTTGAAGGTTAGTAAAGTTGAAAATA
49784146 GTTGAAGGTTAGTAAAGTTGAAAATA
1 GTTGAAGGTTAGTAAAGTTGAAAATA
49784172 GTTGAAG
1 GTTGAAG
49784179 TTGTTATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (26 bp):
GTTGAAGGTTAGTAAAGTTGAAAATA
Found at i:49786426 original size:42 final size:42
Alignment explanation
Indices: 49786356--49786519 Score: 175
Period size: 42 Copynumber: 3.9 Consensus size: 42
49786346 TTAGGGTTAC
** * * **
49786356 TGAGATTACGTGTAAGGCCATATATGGGATATGGCATCTTTA
1 TGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATA
*
49786398 TGTGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATA
** * *
49786440 TGAGCCTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTTTGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* *** *
49786483 CGAGATTACATGTAAGACTATATCTGGGATATGGCAT
1 TGAGATTTTGTGTAAGACCATATCTGGGATATGGCAT
49786520 TGGTATGGTA
Statistics
Matches: 100, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 67 0.67
43 33 0.33
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
TGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:49786497 original size:43 final size:42
Alignment explanation
Indices: 49786408--49786519 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
49786398 TGTGATTTTG
* * **
49786408 TGTAAGACCATATCTGGGATATGGCATCGATATGAGCCTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATACGAGCATTCA
* *
49786450 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAG-ATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATACGAGCATT-CA
*
49786493 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
49786520 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATACGAGCATTCA
Found at i:49802759 original size:144 final size:144
Alignment explanation
Indices: 49802497--49802777 Score: 422
Period size: 144 Copynumber: 2.0 Consensus size: 144
49802487 ACTCCCAGTT
* * * * *
49802497 ATAGCTCGCAGACCGACGCTTCCAACTGATAAACTTCAACATAGCTTGTGGACCTATGTTACCAG
1 ATAGCTCGCAGAACGACGCTTCCAACTGATAAACTTCAACATAGCTAGTGGACCTACGCTACCAA
* * *
49802562 TTGATGTTTAAAGGTCAGATGAGTTATACTCATAACCTTCATTTATTTAAGTAAGCTGAGTTAAG
66 TTGATGTTTAAAGGTCAGATAAATTATACTCAGAACCTTCATTTATTTAAGTAAGCTGAGTTAAG
49802627 CTTGCTATTCTGGA
131 CTTGCTATTCTGGA
* *
49802641 ATAGCTCGC-GAACGTACGCTTCCAACTGATAAATTTCAACATAGCTAGTGGACCTACGCTCCCA
1 ATAGCTCGCAGAACG-ACGCTTCCAACTGATAAACTTCAACATAGCTAGTGGACCTACGCTACCA
* *
49802705 ATTGATGTTTAAAGGAT-AGATAAATTATACTCAGAACCTTCTTTTATTTGAGTAAGCTGAGTTA
65 ATTGATGTTTAAAGG-TCAGATAAATTATACTCAGAACCTTCATTTATTTAAGTAAGCTGAGTTA
49802769 AGCTTGCTA
129 AGCTTGCTA
49802778 CTCCAGAACA
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
143 4 0.03
144 118 0.96
145 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (144 bp):
ATAGCTCGCAGAACGACGCTTCCAACTGATAAACTTCAACATAGCTAGTGGACCTACGCTACCAA
TTGATGTTTAAAGGTCAGATAAATTATACTCAGAACCTTCATTTATTTAAGTAAGCTGAGTTAAG
CTTGCTATTCTGGA
Found at i:49812272 original size:30 final size:30
Alignment explanation
Indices: 49812232--49812299 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
49812222 TGCAAATTCA
*
49812232 ACCCTATAATCATTTTCAATTACATATCAT
1 ACCCTGTAATCATTTTCAATTACATATCAT
49812262 ACCCTGTAATCATTTTCAATTACATATCAT
1 ACCCTGTAATCATTTTCAATTACATATCAT
*
49812292 ACTCTGTA
1 ACCCTGTA
49812300 CAATATGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.40
Consensus pattern (30 bp):
ACCCTGTAATCATTTTCAATTACATATCAT
Found at i:49819755 original size:43 final size:43
Alignment explanation
Indices: 49819682--49819776 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
49819672 GTGACATAGT
* * * *
49819682 CCAGACTGTGTGGGTATTTGAAGCAGGGACACACAGTTGTGTC
1 CCAGCCTGTGTGGGTATTCGAAGCAAGGACACACAGCTGTGTC
* **
49819725 CCAGCCTGTGTGGGTATTCGAAGTAAGGACACATGGCTGTGTC
1 CCAGCCTGTGTGGGTATTCGAAGCAAGGACACACAGCTGTGTC
49819768 CCAGCCTGT
1 CCAGCCTGT
49819777 ATGTCTATTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25
Consensus pattern (43 bp):
CCAGCCTGTGTGGGTATTCGAAGCAAGGACACACAGCTGTGTC
Found at i:49821113 original size:29 final size:29
Alignment explanation
Indices: 49821039--49821113 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
49821029 TTCAGATACT
* * * *
49821039 TGTATCTGGCCCACTAGGCCCAAATCACC
1 TGTATATGGCCCATTAGACCCAAATCACA
49821068 TGTATATGGCCCATTAGACCCAAATCACA
1 TGTATATGGCCCATTAGACCCAAATCACA
* *
49821097 TTTATATGGCCCGTTAG
1 TGTATATGGCCCATTAG
49821114 GCCGAGTCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGACCCAAATCACA
Found at i:49823028 original size:46 final size:46
Alignment explanation
Indices: 49822968--49823379 Score: 673
Period size: 46 Copynumber: 9.0 Consensus size: 46
49822958 TTTGACATGA
* * * * *
49822968 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
49823014 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49823060 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49823106 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
49823152 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * **
49823198 TGCCATGGTGTCTTTCAACCATGGGCTTACATGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
49823244 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCTGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
49823290 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAAGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
49823336 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
49823380 AGAGCACACT
Statistics
Matches: 342, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.01
46 338 0.99
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:49825862 original size:30 final size:30
Alignment explanation
Indices: 49825795--49825862 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
49825785 CACCCTTAAA
* * *
49825795 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
49825825 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
49825854 AGTATTTAC
1 A-TATTTAC
49825863 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:49858678 original size:10 final size:10
Alignment explanation
Indices: 49858652--49858686 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
49858642 AAAAAATATG
49858652 AAACCTTATT
1 AAACCTTATT
49858662 AAA-CTTATT
1 AAACCTTATT
49858671 AAACCTTATT
1 AAACCTTATT
49858681 AAACCT
1 AAACCT
49858687 GTCAGCTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AAACCTTATT
Found at i:49859802 original size:29 final size:29
Alignment explanation
Indices: 49859725--49859812 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 29
49859715 CTATATTCAC
*
49859725 ATGGCCCATTAGGCCCAAACCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* *
49859754 ATGGCCCTTTAGACCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* * *
49859783 GTGGCCCACTAGGCCCAAATCGCA-TTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
49859811 AT
1 AT
49859813 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 5 0.10
29 45 0.90
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:49860055 original size:16 final size:16
Alignment explanation
Indices: 49860031--49860073 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
49860021 GTAGCCAAAC
*
49860031 TTTCGGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
49860047 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTCGGCA
49860063 TTTCAGCTTTT
1 TTTCAGCTTTT
49860074 GCTGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.21, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:49863408 original size:27 final size:27
Alignment explanation
Indices: 49863376--49863428 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
49863366 ATTACTTATT
49863376 ACTTGAACGGTTTTCTAAAAGCAACGC
1 ACTTGAACGGTTTTCTAAAAGCAACGC
49863403 ACTTGAACGGTTTTCTAAAAGCAACG
1 ACTTGAACGGTTTTCTAAAAGCAACG
49863429 TTTTTACAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
ACTTGAACGGTTTTCTAAAAGCAACGC
Found at i:49870125 original size:27 final size:27
Alignment explanation
Indices: 49870095--49870153 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
49870085 AATATACATC
*
49870095 TTACCCTACAGGGGTATTTCGGTCATT
1 TTACCCTACAGGGGTATTTCGATCATT
49870122 TTACCCTACAGGGGTATTTCGATCATT
1 TTACCCTACAGGGGTATTTCGATCATT
49870149 TTACC
1 TTACC
49870154 TATTTTAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (27 bp):
TTACCCTACAGGGGTATTTCGATCATT
Found at i:49879769 original size:40 final size:40
Alignment explanation
Indices: 49879694--49879835 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
49879684 AACCCAAGTA
* * **
49879694 CCTTTGGGAATTAG-CCGGATATAGAAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACT-AGCACAAATG
*
49879733 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49879773 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49879813 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49879836 CATCCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 12 0.13
40 82 0.87
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49883212 original size:40 final size:39
Alignment explanation
Indices: 49883147--49883236 Score: 92
Period size: 40 Copynumber: 2.3 Consensus size: 39
49883137 CTCCGTCCAA
* * * *
49883147 CCTATCACACC-ATATGGGGATAAAATCGACCTACGCATC
1 CCTA-CACACCAATATGGAGAAAAAATCGACCCACGCAAC
* **
49883186 CCTACACACCAATTATGGAGAAAAAATTGACCCATTCAAC
1 CCTACACACCAA-TATGGAGAAAAAATCGACCCACGCAAC
49883226 CCTACACACCA
1 CCTACACACCA
49883237 TAAGGTACTG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
38 6 0.14
39 5 0.12
40 31 0.74
ACGTcount: A:0.38, C:0.32, G:0.11, T:0.19
Consensus pattern (39 bp):
CCTACACACCAATATGGAGAAAAAATCGACCCACGCAAC
Found at i:49889715 original size:18 final size:17
Alignment explanation
Indices: 49889683--49889724 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
49889673 GACTAAGTGA
*
49889683 TTATGT-TTGATGGATGT
1 TTATGTGTTAATGGAT-T
49889700 TTATGTGTTAATGGATT
1 TTATGTGTTAATGGATT
49889717 TTCATGTG
1 TT-ATGTG
49889725 AGAAATGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.52
Consensus pattern (17 bp):
TTATGTGTTAATGGATT
Found at i:49898246 original size:42 final size:41
Alignment explanation
Indices: 49898186--49898311 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 41
49898176 GTAATTCAGT
* * * *
49898186 ATCGATGCCTCTATCCCAGATAGGGTCTTACACGAAATCTA
1 ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAATCTA
*
49898227 ATACGATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCTA
1 AT-CGATGCCTATGTCCCAGACACGGTCTTACACG-AAA--TCTA
* * *
49898272 ATCGAGGCCTATGTGCCAGACACGGTCTTACACGATATCT
1 ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAATCT
49898312 CATATCAATG
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 5 0.07
42 28 0.38
43 5 0.07
44 29 0.40
45 6 0.08
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (41 bp):
ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAATCTA
Found at i:49900312 original size:40 final size:40
Alignment explanation
Indices: 49900251--49900486 Score: 355
Period size: 40 Copynumber: 5.9 Consensus size: 40
49900241 TATTCGGATG
*
49900251 ATAACCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
49900291 ATATCCGGGCTAAGACACGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
49900331 ATAACCGGGCTAAGTCCCGAAGGCATTTCTGTGACTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
49900371 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
49900411 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
49900451 ATAACCGAGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
49900487 AGCTATGTCC
Statistics
Matches: 176, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:49908295 original size:40 final size:40
Alignment explanation
Indices: 49908232--49908387 Score: 249
Period size: 40 Copynumber: 3.9 Consensus size: 40
49908222 TATTTGGATG
* *
49908232 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
* * *
49908272 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTCACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
49908312 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
* *
49908352 ATAACCGGGCTAAGTCCCGAAGACATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
49908388 AGCTATGTCT
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
Found at i:49932347 original size:47 final size:47
Alignment explanation
Indices: 49932293--49932388 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
49932283 GTTGAATTTA
*
49932293 AAGCTTGTTAAATTTGCTCTTAATACTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATACTTCCAGATAAGTTACTTAGTT
* * *
49932340 AAGCTTGTTAAATTTTCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATACTTCCAGATAAGTTACTTAGTT
49932387 AA
1 AA
49932389 AGAAAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATACTTCCAGATAAGTTACTTAGTT
Found at i:49933713 original size:31 final size:31
Alignment explanation
Indices: 49933670--49933738 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
49933660 GACATATACT
*
49933670 AGCCTTTCCATAAATCATATCAGTAGGCCGA
1 AGCCTTTCCATAAATCATATCACTAGGCCGA
* *
49933701 AGCCTTTTCATAAATCATATCACTGGGCCGA
1 AGCCTTTCCATAAATCATATCACTAGGCCGA
49933732 AGCCTTT
1 AGCCTTT
49933739 ACTATAAACG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
AGCCTTTCCATAAATCATATCACTAGGCCGA
Found at i:49933821 original size:42 final size:42
Alignment explanation
Indices: 49933762--49933853 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
49933752 TGGCCCTTAG
*
49933762 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
49933804 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
49933846 GCCCATTT
1 GCCCATTT
49933854 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:49934015 original size:24 final size:24
Alignment explanation
Indices: 49933988--49934069 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
49933978 GTGGAGGCCT
*
49933988 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
*
49934012 AGCCCTTTCTGATAAACTAGGGCAA
1 AGCCCTTT-TAATAAACTAGGGCAA
* ** * *
49934037 AACCCTTTTCGGTAAACTGGGGCAG
1 AGCCCTTTT-AATAAACTAGGGCAA
49934062 AGCCCTTT
1 AGCCCTTT
49934070 CAGCACTTCC
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 4 0.08
24 8 0.17
25 36 0.75
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:49934034 original size:25 final size:26
Alignment explanation
Indices: 49934001--49934070 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
49933991 CTCTTTTAAT
49934001 AACTGGGGCAAAGCCCTTTCT-GATA
1 AACTGGGGCAAAGCCCTTTCTCGATA
* * *
49934026 AACTAGGGCAAAACCCTTT-TCGGTA
1 AACTGGGGCAAAGCCCTTTCTCGATA
*
49934051 AACTGGGGCAGAGCCCTTTC
1 AACTGGGGCAAAGCCCTTTC
49934071 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTCTCGATA
Found at i:49937277 original size:45 final size:44
Alignment explanation
Indices: 49937226--49937429 Score: 268
Period size: 45 Copynumber: 4.6 Consensus size: 44
49937216 CGCACAGTAT
**
49937226 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATATCGGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
49937271 TATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCAGGTAAGATAC
1 TATTCGGGC-TTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
49937316 TATTTGGGCTTTCGACCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
49937361 TATTCGGACTTTCGAGCCTAGTAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
49937406 TA-TCGGGCTTTGAGCCTAGCAGGC
1 TATTCGGGCTTTGAGCCTAGCAGGC
49937430 GAAATGCTCG
Statistics
Matches: 141, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
43 12 0.09
44 12 0.09
45 116 0.82
46 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (44 bp):
TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:49946893 original size:68 final size:67
Alignment explanation
Indices: 49946821--49946970 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
49946811 CATCATGTGT
* * * *
49946821 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
49946883 ATGTAG
62 ATGTAG
** * *
49946889 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
49946954 AG
66 AG
49946956 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
49946971 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:49946926 original size:64 final size:64
Alignment explanation
Indices: 49946845--49947028 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
49946835 AGACATTATG
* *
49946845 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
49946909 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
49946974 AA
63 AA
* * * *
49946976 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
49947029 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:49950655 original size:27 final size:27
Alignment explanation
Indices: 49950625--49950820 Score: 241
Period size: 27 Copynumber: 7.3 Consensus size: 27
49950615 TAAGTTGTAG
* *
49950625 AATTAACGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
*
49950652 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
** * *
49950679 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
*
49950706 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
49950733 AATTACCGAAATACCCCTGTAGGGTAGA
1 AATTACCGAAATACCCCTGTAGGGTA-A
** * *
49950761 AA-TACTAAAATACCCCTATAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
49950787 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
49950814 AATTACC
1 AATTACC
49950821 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 141 0.97
28 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAA
Found at i:49950719 original size:81 final size:81
Alignment explanation
Indices: 49950621--49950820 Score: 283
Period size: 81 Copynumber: 2.5 Consensus size: 81
49950611 TGGATAAGTT
* * * *
49950621 GTAGAATTAACGAAATACCCCTGTAAGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAAATACT
* * * *
49950686 GAAATACCCTTGTAGG
66 AAAATACCCCTATAAG
*
49950702 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAAATACT
49950767 AAAATACCCCTATAAG
66 AAAATACCCCTATAAG
* * * *
49950783 GTAAAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACC
49950821 ATTTTGCCCC
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAAATACT
AAAATACCCCTATAAG
Found at i:49951516 original size:27 final size:26
Alignment explanation
Indices: 49951472--49951523 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
49951462 CTCGCTGCAA
*
49951472 TCTGGTGGCCTTGGCACATATATCTGT
1 TCTGGTGACCTTGGCACA-ATATCTGT
* *
49951499 TCTGGTGACTTTGTCACAATATCTG
1 TCTGGTGACCTTGGCACAATATCTG
49951524 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
TCTGGTGACCTTGGCACAATATCTGT
Found at i:49952620 original size:17 final size:17
Alignment explanation
Indices: 49952600--49952651 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 17
49952590 ATCTTTTCCA
49952600 TCTATCTTATTTATTGT
1 TCTATCTTATTTATTGT
49952617 TCTAACTCTTTGATTTATTGT
1 TCT-A-TC-TT-ATTTATTGT
*
49952638 TCTATTTTATTTAT
1 TCTATCTTATTTAT
49952652 ATTAGTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 9 0.30
18 3 0.10
19 3 0.10
20 3 0.10
21 12 0.40
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.63
Consensus pattern (17 bp):
TCTATCTTATTTATTGT
Found at i:49954079 original size:46 final size:44
Alignment explanation
Indices: 49954026--49954142 Score: 121
Period size: 46 Copynumber: 2.6 Consensus size: 44
49954016 GAGAGCTAGA
49954026 GTAAGACATGTCTGAGACATGCATCAACCT-CGAGATGTAAGCCAGT
1 GTAAGACATGTCTGAGACATGCATC-ACCTACGAG-T-TAAGCCAGT
* ** *
49954072 GTAAGACATGTCT-AGGACATGTATCGGCTACGAGTTAAGCTAGT
1 GTAAGACATGTCTGA-GACATGCATCACCTACGAGTTAAGCCAGT
*
49954116 GTAAGACCATGTCTGGGACATGGCATC
1 GTAAGA-CATGTCTGAGACAT-GCATC
49954143 GGCATCCTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
44 14 0.23
45 16 0.27
46 30 0.50
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (44 bp):
GTAAGACATGTCTGAGACATGCATCACCTACGAGTTAAGCCAGT
Found at i:49955045 original size:6 final size:6
Alignment explanation
Indices: 49955009--49955038 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
49954999 TTATTATTAA
49955009 TTATTT TTATTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT
49955039 AGTTTTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:49958385 original size:11 final size:11
Alignment explanation
Indices: 49958369--49958400 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
49958359 TTTTATATGA
49958369 TATTTTATTAT
1 TATTTTATTAT
49958380 TATTTTATTAT
1 TATTTTATTAT
49958391 TATTTTATTA
1 TATTTTATTA
49958401 GTATATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:49959999 original size:16 final size:16
Alignment explanation
Indices: 49959978--49960015 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
49959968 GCATATAGAA
49959978 TTTGATTTATGTTAAG
1 TTTGATTTATGTTAAG
49959994 TTTGATTTATGTTAAG
1 TTTGATTTATGTTAAG
49960010 TTTGAT
1 TTTGAT
49960016 ATGAATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (16 bp):
TTTGATTTATGTTAAG
Found at i:49962948 original size:20 final size:20
Alignment explanation
Indices: 49962923--49962960 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49962913 AAAAGCATAC
*
49962923 AAAATTTTAAAAATATATTA
1 AAAATTATAAAAATATATTA
*
49962943 AAAATTATAAAATTATAT
1 AAAATTATAAAAATATAT
49962961 AGAATTACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTATAAAAATATATTA
Found at i:49963390 original size:18 final size:18
Alignment explanation
Indices: 49963349--49963390 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
49963339 GAGATTATTA
49963349 TATTATAAATTTTATATG
1 TATTATAAATTTTATATG
* *
49963367 TCTTATAATTTTTATGAT-
1 TATTATAAATTTTAT-ATG
49963385 TATTAT
1 TATTAT
49963391 GTTTATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (18 bp):
TATTATAAATTTTATATG
Found at i:49963460 original size:18 final size:18
Alignment explanation
Indices: 49963437--49963572 Score: 93
Period size: 18 Copynumber: 7.6 Consensus size: 18
49963427 ACCATTTCCT
49963437 ATATTTTTATATTTTATA
1 ATATTTTTATATTTTATA
*
49963455 ATATTTTTAGATTTTTTTATA
1 ATATTTTT--A-TATTTTATA
** * *
49963476 A-ATTTAAAATATTTTTTT
1 ATATTT-TTATATTTTATA
*
49963494 ATATTTTTACATTTTATA
1 ATATTTTTATATTTTATA
** *
49963512 ATAAATTT-TCTTTTATA
1 ATATTTTTATATTTTATA
* *
49963529 A-ATTTTTGTATTTCA-A
1 ATATTTTTATATTTTATA
49963545 ATATTTTTATAATTTT-TA
1 ATATTTTTAT-ATTTTATA
49963563 ATATTTTTAT
1 ATATTTTTAT
49963573 TGATTAAAAT
Statistics
Matches: 88, Mismatches: 21, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
16 6 0.07
17 20 0.23
18 43 0.49
19 5 0.06
20 5 0.06
21 9 0.10
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (18 bp):
ATATTTTTATATTTTATA
Found at i:49963489 original size:39 final size:39
Alignment explanation
Indices: 49963445--49963519 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
49963435 CTATATTTTT
* * *
49963445 ATATTTTATAATATTTTTAGATTTTTTTATAAATTTAAA
1 ATATTTTATAATATTTTTACATTTTATAATAAATTTAAA
* *
49963484 ATATTTTTTTATATTTTTACATTTTATAATAAATTT
1 ATATTTTATAATATTTTTACATTTTATAATAAATTT
49963520 TCTTTTATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (39 bp):
ATATTTTATAATATTTTTACATTTTATAATAAATTTAAA
Found at i:49963500 original size:29 final size:28
Alignment explanation
Indices: 49963402--49963502 Score: 80
Period size: 29 Copynumber: 3.6 Consensus size: 28
49963392 TTTATTTTAA
* **
49963402 ATTTTTATATATTTTTAGATATTT-AACC
1 ATTTTTATATATTTTTATA-ATTTAAAAT
** * *
49963430 A-TTTCCTATATTTTTATATTTTATAAT
1 ATTTTTATATATTTTTATAATTTAAAAT
* *
49963457 ATTTTTAGATTTTTTTATAAATTTAAAAT
1 ATTTTTATATATTTTTAT-AATTTAAAAT
*
49963486 ATTTTTTTATATTTTTA
1 ATTTTTATATATTTTTA
49963503 CATTTTATAA
Statistics
Matches: 54, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
26 3 0.06
27 16 0.30
28 13 0.24
29 22 0.41
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (28 bp):
ATTTTTATATATTTTTATAATTTAAAAT
Found at i:49963570 original size:10 final size:9
Alignment explanation
Indices: 49963437--49963571 Score: 50
Period size: 9 Copynumber: 15.0 Consensus size: 9
49963427 ACCATTTCCT
49963437 ATATTTTT-
1 ATATTTTTA
49963445 ATATTTTATA
1 ATATTTT-TA
49963455 ATATTTTTA
1 ATATTTTTA
*
49963464 GATTTTTTTA
1 -ATATTTTTA
* **
49963474 TAAATTTAAA
1 -ATATTTTTA
*
49963484 ATATTTTTTT
1 ATA-TTTTTA
49963494 ATATTTTTA
1 ATATTTTTA
*
49963503 CAT-TTTATA
1 -ATATTTTTA
*
49963512 ATAAATTTT-
1 AT-ATTTTTA
* *
49963521 CT-TTTATA
1 ATATTTTTA
49963529 A-ATTTTT-
1 ATATTTTTA
* **
49963536 GTATTTCAA
1 ATATTTTTA
49963545 ATATTTTT-
1 ATATTTTTA
49963553 ATAATTTTTA
1 AT-ATTTTTA
49963563 ATATTTTTA
1 ATATTTTTA
49963572 TTGATTAAAA
Statistics
Matches: 89, Mismatches: 25, Indels: 25
0.64 0.18 0.18
Matches are distributed among these distances:
7 3 0.03
8 19 0.21
9 34 0.38
10 33 0.37
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (9 bp):
ATATTTTTA
Found at i:49964890 original size:20 final size:20
Alignment explanation
Indices: 49964858--49964903 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
49964848 ATTCTTCAGC
*
49964858 AATTTTGTTAAAAAAATTTA
1 AATTTTGTTAAAAAAATATA
49964878 TAATTTT-TTAAAAAAATATA
1 -AATTTTGTTAAAAAAATATA
49964898 AATTTT
1 AATTTT
49964904 AGAATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 12 0.50
21 6 0.25
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
AATTTTGTTAAAAAAATATA
Found at i:49964964 original size:20 final size:20
Alignment explanation
Indices: 49964899--49964965 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
49964889 AAAAATATAA
*
49964899 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTAGAAATT
*
49964919 ATTTT-AAGTTTTAGAAATT
1 ATTTTGAATTTTTAGAAATT
49964938 ATTTTTGAATTTTT-GAAAATT
1 A-TTTTGAATTTTTAG-AAATT
49964959 ATTTTGA
1 ATTTTGA
49964966 TTCTTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 10 0.25
19 2 0.05
20 16 0.40
21 12 0.30
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (20 bp):
ATTTTGAATTTTTAGAAATT
Found at i:49967742 original size:18 final size:19
Alignment explanation
Indices: 49967714--49967752 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
49967704 ATTAATCATA
* *
49967714 TAAATTTTTTTTATAATTT
1 TAAATTTTTTTAATAAATT
49967733 TAAA-TTTTTTAATAAATT
1 TAAATTTTTTTAATAAATT
49967751 TA
1 TA
49967753 TTATAGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TAAATTTTTTTAATAAATT
Found at i:49967750 original size:19 final size:19
Alignment explanation
Indices: 49967714--49967752 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
49967704 ATTAATCATA
*
49967714 TAAATTTTTTTTATAATTT
1 TAAATTTTTTATATAATTT
*
49967733 TAAATTTTTTA-ATAAATT
1 TAAATTTTTTATATAATTT
49967751 TA
1 TA
49967753 TTATAGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TAAATTTTTTATATAATTT
Found at i:49971651 original size:50 final size:50
Alignment explanation
Indices: 49971535--49971814 Score: 294
Period size: 50 Copynumber: 5.5 Consensus size: 50
49971525 GTGAGAACAT
* * ** * *
49971535 ATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTT-TTGGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCA-GATTGTTAGGTCAC
* *
49971587 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * *
49971637 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGCTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCAC
* * * * * *
49971688 GTGTGTAGTACTAAGTGCAGACTACTACGTGTATCTGATGGTTAGGTCAT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * *
49971738 GTGTATAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
49971788 ATGTGTAGTACTAAGTGCAGGCTACTA
1 ATGTGTAGTACTAAGTGCAGGCTACTA
49971815 TTCGTACCAG
Statistics
Matches: 189, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
49 3 0.02
50 118 0.62
51 40 0.21
52 28 0.15
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
Found at i:49971713 original size:101 final size:99
Alignment explanation
Indices: 49971583--49971814 Score: 297
Period size: 101 Copynumber: 2.3 Consensus size: 99
49971573 CGGTTTTGGG
*
49971583 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTG-TAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT--CATGTGATAGTA
* * *
49971647 CTAAGTGCAGGCTACTATGCGTACTC-GATAGCTTCGA
64 CTAAGTGCAAGCTACTACGCGTAC-CAGATAG-TTAGA
* * *
49971684 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTATCTGATGGTTAGGTCATGTGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCATGTG-ATAGTAC
* * *
49971749 TAAGTGCAAGCTACTACGTGTACCAGATTGTTAGG
65 TAAGTGCAAGCTACTACGCGTACCAGATAGTTAGA
* *
49971784 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
49971815 TTCGTACCAG
Statistics
Matches: 115, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
99 6 0.05
100 32 0.28
101 77 0.67
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCATGTGATAGTACT
AAGTGCAAGCTACTACGCGTACCAGATAGTTAGA
Found at i:49971812 original size:151 final size:152
Alignment explanation
Indices: 49971536--49971821 Score: 448
Period size: 151 Copynumber: 1.9 Consensus size: 152
49971526 TGAGAACATA
* * * * * *
49971536 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTTTTGGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGACTACTACGTGTATAAGACGG-TTTAGGTCACGTGTATAGTACTAA
*
49971601 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
65 GTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
49971666 CGTACTCGATAGCTTCGATCACG
130 CGTACTCGATAGCTTCGATCACG
** * *
49971689 TGTGTAGTACTAAGTGCAGACTACTACGTGTATCTGATGG-TTAGGTCATGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGACTACTACGTGTATAAGACGGTTTAGGTCACGTGTATAGTACTAAG
*
49971753 TGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATTC
66 TGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
49971818 GTAC
131 GTAC
49971822 CAGAGAGCTT
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
151 88 0.73
153 33 0.27
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAGACTACTACGTGTATAAGACGGTTTAGGTCACGTGTATAGTACTAAG
TGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
GTACTCGATAGCTTCGATCACG
Found at i:49974759 original size:11 final size:11
Alignment explanation
Indices: 49974745--49974775 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
49974735 CAGGCCTACC
49974745 ACACGGCCTGT
1 ACACGGCCTGT
49974756 ACACGGCCTGT
1 ACACGGCCTGT
49974767 ACACGGCCT
1 ACACGGCCT
49974776 TGTGGTGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.39, G:0.26, T:0.16
Consensus pattern (11 bp):
ACACGGCCTGT
Found at i:49982971 original size:14 final size:15
Alignment explanation
Indices: 49982943--49982971 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49982933 CTCTTTCTTG
49982943 GACAAGAATAATCCA
1 GACAAGAATAATCCA
49982958 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
49982972 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:49983665 original size:15 final size:15
Alignment explanation
Indices: 49983642--49983690 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
49983632 ACGGAGAAGC
*
49983642 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
* *
49983657 CTAAGATAAAAAAAT
1 CCAAGATAAAGAAAT
* *
49983672 CCATGATAACGAAAT
1 CCAAGATAAAGAAAT
49983687 CCAA
1 CCAA
49983691 TTTACAACAC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.59, C:0.16, G:0.08, T:0.16
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:49986744 original size:96 final size:96
Alignment explanation
Indices: 49986580--49986759 Score: 254
Period size: 96 Copynumber: 1.9 Consensus size: 96
49986570 TAAATTTCCA
* * * * *
49986580 ATGCCATGTCCCAGATATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAACATAGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCCAAACA
*
49986645 TGGTCTTACTCTAGCTCTCGTAACATTGCCG
66 TGGTCTTACACTAGCTCTCGTAACATTGCCG
* * *
49986676 ATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTCCCAAAC
1 ATGCCATGTCCCAAACATAGTCTTACACTGGCTCACAT-ATCGAGGCTGATGCCATGTCCCAAAC
*
49986740 ATGGTCTTACACTGGCTCTC
65 ATGGTCTTACACTAGCTCTC
49986760 ATAATGTGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 72 0.99
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATAGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCGTAACATTGCCG
Found at i:49986763 original size:48 final size:48
Alignment explanation
Indices: 49986580--49986767 Score: 225
Period size: 48 Copynumber: 3.9 Consensus size: 48
49986570 TAAATTTCCA
* * * * *
49986580 ATGCCATGTCCCAGATATGGTCTTACACTGGCTCACAT-GTCGAGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTG
* * * * ** * *
49986628 ATGCCATGTCCCAGACATGGTCTTACTCTAGCTCTCGTAACATTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTG
* *
49986676 ATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTG
49986724 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTG
49986768 ATCTTACATT
Statistics
Matches: 116, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTG
Found at i:49986784 original size:25 final size:25
Alignment explanation
Indices: 49986744--49986792 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
49986734 CCAAACATGG
49986744 TCTTACACTGGCTCTCATAATGTGA
1 TCTTACACTGGCTCTCATAATGTGA
* *
49986769 TCTTACATTGGTTCTCATAATGTG
1 TCTTACACTGGCTCTCATAATGTG
49986793 GCCGATGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.41
Consensus pattern (25 bp):
TCTTACACTGGCTCTCATAATGTGA
Found at i:49997750 original size:37 final size:37
Alignment explanation
Indices: 49997704--49997788 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 37
49997694 TGCATTATTC
* *
49997704 ATATGGGTTTGATATTGAAATGGGCTAGGCCCAACTG
1 ATATTGGTTTGATATTGAAATGGGCTAGGCCCAACTA
*
49997741 ATATTGG--T--T-TTGATATGGGCTAGGCCCAACTA
1 ATATTGGTTTGATATTGAAATGGGCTAGGCCCAACTA
49997773 ATATTGGTTCTGATAT
1 ATATTGGTT-TGATAT
49997789 AGGATAAGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
32 28 0.72
33 1 0.03
35 2 0.05
37 7 0.18
38 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (37 bp):
ATATTGGTTTGATATTGAAATGGGCTAGGCCCAACTA
Found at i:49997764 original size:32 final size:32
Alignment explanation
Indices: 49997718--49997839 Score: 163
Period size: 32 Copynumber: 3.8 Consensus size: 32
49997708 GGGTTTGATA
*
49997718 TTGAAATGGGCTAGGCCCAACTGATATTGGTT
1 TTGATATGGGCTAGGCCCAACTGATATTGGTT
*
49997750 TTGATATGGGCTAGGCCCAACTAATATTGGTT
1 TTGATATGGGCTAGGCCCAACTGATATTGGTT
* * * * *
49997782 CTGATATAGGATAAGCCCAACTGATATTGATT
1 TTGATATGGGCTAGGCCCAACTGATATTGGTT
* *
49997814 TTGAGATGGGCTAGGCCCAATTGATA
1 TTGATATGGGCTAGGCCCAACTGATA
49997840 CTTTGATGGG
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (32 bp):
TTGATATGGGCTAGGCCCAACTGATATTGGTT
Found at i:50005791 original size:47 final size:47
Alignment explanation
Indices: 50005730--50006170 Score: 758
Period size: 47 Copynumber: 9.4 Consensus size: 47
50005720 CAGCCAAGAC
50005730 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50005777 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50005824 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50005870 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50005917 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50005964 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50006011 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50006058 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
50006105 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50006152 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
50006171 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 19, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 46 0.12
47 328 0.88
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:50006345 original size:37 final size:37
Alignment explanation
Indices: 50006289--50006367 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50006279 CCGAGCTCTA
* *
50006289 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
50006326 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50006363 AAGAC
1 AAGAC
50006368 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50008273 original size:43 final size:43
Alignment explanation
Indices: 50008225--50008327 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
50008215 TTGGTTTTCA
50008225 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
50008268 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
50008311 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
50008328 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:50008344 original size:29 final size:29
Alignment explanation
Indices: 50008309--50008382 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
50008299 GTTGTGAGAT
* *
50008309 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
50008338 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
50008367 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50008383 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:50008741 original size:40 final size:40
Alignment explanation
Indices: 50008693--50008808 Score: 178
Period size: 40 Copynumber: 2.9 Consensus size: 40
50008683 TCGAATGATG
*
50008693 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
50008733 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
50008773 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
50008809 CGTGTATTCG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:50011570 original size:47 final size:46
Alignment explanation
Indices: 50011539--50012022 Score: 734
Period size: 47 Copynumber: 10.3 Consensus size: 46
50011529 GTATATGTGT
*
50011539 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
* *
50011586 TATATATGTGATAAGGCCTAATCGCCGCTGTGATAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATAATGTGAAAGTG
50011632 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
*
50011679 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
* *
50011726 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
*
50011773 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
* *
50011820 TATATGTGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
* * *
50011867 TCTATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
* *
50011914 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAATGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
*
50011961 TATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
* *
50012008 CATAAATGTGATAAG
1 TATATATGTGATAAG
50012023 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 0.11
47 366 0.89
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (46 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATAATGTGAAAGTG
Found at i:50011835 original size:141 final size:141
Alignment explanation
Indices: 50011539--50012022 Score: 828
Period size: 141 Copynumber: 3.4 Consensus size: 141
50011529 GTATATGTGT
50011539 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
50011604 TAATCGCCGCTGTGAT-AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50011668 ATGTGAAAGTG
131 ATGTGAAATTG
*
50011679 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
50011744 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50011809 ATGTGAAATTG
131 ATGTGAAATTG
* * * *
50011820 TATATGTGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGTCTATGTGTGATAAGGCC
1 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
50011885 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50011950 ATGTG-AATGTG
131 ATGTGAAAT-TG
* * * *
50011961 TATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50012023 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
140 81 0.25
141 245 0.75
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (141 bp):
TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAATTG
Found at i:50012191 original size:37 final size:37
Alignment explanation
Indices: 50012141--50012219 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50012131 CCGAGATCTA
* *
50012141 AAGACCCGATAACTACGTGTGG-GAATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
50012178 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50012215 AAGAC
1 AAGAC
50012220 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50014303 original size:40 final size:40
Alignment explanation
Indices: 50014259--50014446 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
50014249 GCTACTAGCT
*
50014259 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
50014299 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50014339 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * **
50014379 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTATCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
50014418 CAAATGCCTTCGGGACTTAGCCCAGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
50014447 CAATCCGAAT
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.02
39 31 0.23
40 98 0.74
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50014446 original size:79 final size:80
Alignment explanation
Indices: 50014236--50014446 Score: 322
Period size: 80 Copynumber: 2.7 Consensus size: 80
50014226 CCTTCGGAGT
* *
50014236 TTAG-CCGAATATAGCT-ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 TTAGCCCGAATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50014299 CAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
*
50014315 TTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
50014380 AAATGCCTTCGGG-C
66 AAATGCCTTCGGGAC
* * *
50014394 TTAGCCCGAA-ATTAGTCACTATCACAAATGCCTTCGGGACTTAGCCCAGTTAT
1 TTAGCCCGAATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
50014447 CAATCCGAAT
Statistics
Matches: 122, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
78 1 0.01
79 53 0.43
80 68 0.56
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
TTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
AAATGCCTTCGGGAC
Found at i:50030329 original size:40 final size:40
Alignment explanation
Indices: 50030278--50030505 Score: 352
Period size: 40 Copynumber: 5.7 Consensus size: 40
50030268 GCTACTAGCT
*
50030278 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50030318 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
50030358 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50030398 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* ** * *
50030438 CAAATGCCTTCGAG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
50030477 CAAATGCCTTCGGGACTTAGCCCAGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
50030506 CAATCCGAAT
Statistics
Matches: 172, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 137 0.80
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50035370 original size:43 final size:43
Alignment explanation
Indices: 50035304--50035446 Score: 178
Period size: 43 Copynumber: 3.3 Consensus size: 43
50035294 CTTTGCTTGA
** * * *
50035304 ATCACCGGCATTAAACCTGCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
50035347 ATCACCGGCACGAAGCCTACTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * * *
50035390 ATCACCAGCACAAAGCCTGCTAGGCATGAAGGCCTGATTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
50035433 ATCACCGGCACGAA
1 ATCACCGGCACGAA
50035447 AGCCCTTCAG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.35, C:0.32, G:0.20, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:50035485 original size:40 final size:40
Alignment explanation
Indices: 50035435--50035555 Score: 161
Period size: 40 Copynumber: 3.0 Consensus size: 40
50035425 GATTACACAT
* * * * *
50035435 CACCGGCACGAAAGCCCTTCAGGACTTAGCCCAAATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAAATATAA
**
50035475 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAAATATAA
**
50035515 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAAATATAA
50035555 C
1 C
50035556 TCTCAATTCT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.18
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCAAATATAA
Found at i:50038145 original size:9 final size:9
Alignment explanation
Indices: 50038131--50038161 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
50038121 GAGATCTATA
50038131 AAACAGAGG
1 AAACAGAGG
50038140 AAACAGAGG
1 AAACAGAGG
*
50038149 AAACAGAGT
1 AAACAGAGG
50038158 AAAC
1 AAAC
50038162 GGAGTAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.58, C:0.13, G:0.26, T:0.03
Consensus pattern (9 bp):
AAACAGAGG
Found at i:50038599 original size:37 final size:37
Alignment explanation
Indices: 50038549--50038627 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50038539 TTATTACGAA
* * *
50038549 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50038586 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50038623 GTCTT
1 GTCTT
50038628 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50038821 original size:47 final size:47
Alignment explanation
Indices: 50038745--50039294 Score: 1014
Period size: 47 Copynumber: 11.7 Consensus size: 47
50038735 GCCCTTCGGG
* *
50038745 ACTTATCACATTCATCACATCGGCTATTAGGCCCTATCACATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50038793 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50038841 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50038888 ACTTTCACATTCATCACATCGGCTATTAGGCCTTAT-ACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50038934 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50038981 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50039028 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50039075 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50039122 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50039169 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50039216 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50039263 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
50039295 ATACTATCAT
Statistics
Matches: 491, Mismatches: 7, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
46 51 0.10
47 390 0.79
48 44 0.09
49 6 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:50050760 original size:31 final size:31
Alignment explanation
Indices: 50050716--50050794 Score: 133
Period size: 31 Copynumber: 2.5 Consensus size: 31
50050706 TTTAACGGTT
50050716 ACTGGGCTC-AAGCCTTTTCATAAATCATATC
1 ACTGGGC-CGAAGCCTTTTCATAAATCATATC
50050747 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
50050778 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
50050795 ACTGTAAATG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 1 0.02
31 45 0.98
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:50051084 original size:26 final size:26
Alignment explanation
Indices: 50051000--50051187 Score: 258
Period size: 26 Copynumber: 7.3 Consensus size: 26
50050990 CTGGAGGCCT
50051000 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
50051024 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
50051049 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** * *
50051075 AGCCCTTTTCGGTAAACTAGGCCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
50051101 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
50051127 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
50051153 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
50051179 AGCCCTTTT
1 AGCCCTTTT
50051188 GCACTTCCTC
Statistics
Matches: 145, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
23 5 0.03
24 5 0.03
25 33 0.23
26 102 0.70
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:50051118 original size:52 final size:52
Alignment explanation
Indices: 50051000--50051187 Score: 312
Period size: 52 Copynumber: 3.7 Consensus size: 52
50050990 CTGGAGGCCT
50051000 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
* *
50051049 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGCCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
*
50051101 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
50051153 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
50051188 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
48 5 0.04
49 7 0.05
50 10 0.08
51 23 0.18
52 84 0.65
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:50052086 original size:27 final size:27
Alignment explanation
Indices: 50051990--50052077 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
50051980 ATATTCGTCA
* *
50051990 TTTTACCATACAGGGG-TATTACAGTCA
1 TTTTACCCTACAGGGGCT-TTACAGTCT
*
50052017 CTTTACCCTACAGGGGCTTTACAGTCT
1 TTTTACCCTACAGGGGCTTTACAGTCT
**
50052044 TTTTACCCTACAGGGGCTTTATGGTCT
1 TTTTACCCTACAGGGGCTTTACAGTCT
50052071 TTTTACC
1 TTTTACC
50052078 TAATAGGGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCTTTACAGTCT
Found at i:50052161 original size:27 final size:27
Alignment explanation
Indices: 50052108--50052506 Score: 178
Period size: 27 Copynumber: 14.7 Consensus size: 27
50052098 TTTCATCCTA
* * * * * *
50052108 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
50052135 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
50052162 CAATGGTATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
50052191 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
50052218 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** * * *
50052245 TGAGGGTATTTTGGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
50052271 CCAGTGGTATTTTGGTAATTTTATAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAT
* * *
50052298 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
** * *
50052326 TGAGGGTATTTT-GTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
50052352 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** **** *
50052379 TGAGGGTAAAACAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
**** *
50052406 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* ***** *
50052433 CGAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * * *
50052460 CGAGGGTACTTTGGTAATTTTACAATT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** *
50052487 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTTAGTAATTT
50052507 GCTAAACTAA
Statistics
Matches: 300, Mismatches: 63, Indels: 18
0.79 0.17 0.05
Matches are distributed among these distances:
26 26 0.09
27 244 0.81
28 16 0.05
29 14 0.05
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:50052313 original size:81 final size:80
Alignment explanation
Indices: 50052191--50052377 Score: 272
Period size: 81 Copynumber: 2.3 Consensus size: 80
50052181 TTTAGAAAGT
* *
50052191 CAAGGGTATTTCT-GTAACTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TAGTAATTTTATAAACT-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
50052254 TTTGGTAATTTCACAAAC
64 TTT-GTAATTTCACAAAC
*
50052272 C-AGTGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 CAAG-GGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
*
50052336 TTGTAATTTTACAAAC
65 TTGTAATTTCACAAAC
*
50052352 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTAGTAATTTTATAAA
50052378 TTGAGGGTAA
Statistics
Matches: 97, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
80 37 0.38
81 59 0.61
82 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (80 bp):
CAAGGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
TGTAATTTCACAAAC
Found at i:50052369 original size:53 final size:54
Alignment explanation
Indices: 50052221--50052386 Score: 210
Period size: 54 Copynumber: 3.1 Consensus size: 54
50052211 TGTAAATCAG
* * * **
50052221 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGA
* *
50052274 GTGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGA
* * **
50052329 GGGTATTTT-GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGA
50052382 GGGTA
1 GGGTA
50052387 AAACAGTAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
53 44 0.45
54 52 0.53
55 2 0.02
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGA
Found at i:50052412 original size:80 final size:81
Alignment explanation
Indices: 50052231--50052413 Score: 192
Period size: 80 Copynumber: 2.3 Consensus size: 81
50052221 GGGTATTTTG
** *
50052231 GTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTATA
1 GTAATTTTACAAATCAAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTAGTAATTTTATA
*****
50052296 AACTAGGGGTATTTTG
66 AACTAGGGGTAAAACA
** * *
50052312 GTAATTTTACAAATTGAGGGTATTTT-GTAATTTTACAAACCAAG-GGTATTTTAGTAATTTTGT
1 GTAATTTTACAAATCAAGGGTATTTTGGTAATTTCACAAACC-AGTGGTATTTTAGTAATTTTAT
*
50052375 AAA-TTGAGGGTAAAACA
65 AAACTAG-GGGTAAAACA
**
50052392 GTAATTTTGTAAATCAAGGGTA
1 GTAATTTTACAAATCAAGGGTA
50052414 AAACAGTAAT
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 57 0.66
81 28 0.32
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (81 bp):
GTAATTTTACAAATCAAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTAGTAATTTTATA
AACTAGGGGTAAAACA
Found at i:50052504 original size:54 final size:54
Alignment explanation
Indices: 50052221--50052506 Score: 209
Period size: 54 Copynumber: 5.3 Consensus size: 54
50052211 TGTAAATCAG
* * ** * **
50052221 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAA-CCA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAATTGA
* *
50052274 GTGGTATTTTGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTCGGTAATTTTATAAATC-AAGGGTATTTTGGTAATTTTACAAATTGA
* * * * **
50052329 GGGTATTT-TGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATTGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAATTGA
*** * * ***** * * *
50052382 GGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAATTGA
*** * * * *
50052436 GGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAATTTGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAATTGA
*
50052490 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
50052507 GCTAAACTAA
Statistics
Matches: 183, Mismatches: 45, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
53 43 0.23
54 138 0.75
55 2 0.01
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAATTGA
Found at i:50053576 original size:27 final size:27
Alignment explanation
Indices: 50053538--50053592 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
50053528 GCTCCATGGC
50053538 CTCCAAGTTTGAGAGAATTTCTTTAAA
1 CTCCAAGTTTGAGAGAATTTCTTTAAA
50053565 CTCCAAGTTTGAGAGAATTTCTTTAAA
1 CTCCAAGTTTGAGAGAATTTCTTTAAA
50053592 C
1 C
50053593 ACTATTAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (27 bp):
CTCCAAGTTTGAGAGAATTTCTTTAAA
Found at i:50065385 original size:27 final size:27
Alignment explanation
Indices: 50065305--50065392 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
50065295 GGCCGTTAGG
* * *
50065305 ACCCTTGTAGTGCAAAATTACTGAAAT
1 ACCCTCGTAGTGAAAAATTACCGAAAT
* *
50065332 ACCC-CTATAGTGAAAAATTATCGAAAT
1 ACCCTC-GTAGTGAAAAATTACCGAAAT
* *
50065359 ACCCTCGTAGTGTAAAATTACCAAAAT
1 ACCCTCGTAGTGAAAAATTACCGAAAT
*
50065386 AACCTCG
1 ACCCTCG
50065393 ATTTGTGAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (27 bp):
ACCCTCGTAGTGAAAAATTACCGAAAT
Found at i:50068999 original size:24 final size:24
Alignment explanation
Indices: 50068963--50069013 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
50068953 TAACTGGATA
* *
50068963 CTCTGATTTGTTATAGGTGCGGTG
1 CTCTGATTGGTTATAAGTGCGGTG
50068987 CTCTGATTGGTTATAAGTGCGGTG
1 CTCTGATTGGTTATAAGTGCGGTG
50069011 CTC
1 CTC
50069014 GTGAAGTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.14, C:0.16, G:0.31, T:0.39
Consensus pattern (24 bp):
CTCTGATTGGTTATAAGTGCGGTG
Found at i:50073995 original size:40 final size:40
Alignment explanation
Indices: 50073928--50074062 Score: 220
Period size: 40 Copynumber: 3.4 Consensus size: 40
50073918 ACCCAAGTAT
*
50073928 CTTCGGGAT-TTAG-CCGGATATAACAACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
50073967 CTTCGGGTCCTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
50074007 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
50074047 CTTCGGGTCTTAGCCC
1 CTTCGGGTCTTAGCCC
50074063 AGTTATCATC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 78 0.88
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:50079115 original size:47 final size:47
Alignment explanation
Indices: 50079054--50079542 Score: 807
Period size: 47 Copynumber: 10.4 Consensus size: 47
50079044 CAGCCAAGAC
50079054 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50079101 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50079148 AGTGTATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50079195 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50079242 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
50079289 AGTGTATATGTATGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50079336 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50079383 AGTGTATATATGTAATAAGACCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50079430 AGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
50079477 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50079524 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
50079543 TCCCGAAGGG
Statistics
Matches: 413, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 413 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:50079717 original size:37 final size:37
Alignment explanation
Indices: 50079665--50079739 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
50079655 GCTCTAAAGG
* *
50079665 CCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAAGA
*
50079702 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
50079739 C
1 C
50079740 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 33 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:50086818 original size:40 final size:40
Alignment explanation
Indices: 50086751--50086885 Score: 229
Period size: 40 Copynumber: 3.4 Consensus size: 40
50086741 ACCCAAGTAT
*
50086751 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
50086790 CTTCGGGTCCTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
50086830 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
50086870 CTTCGGGTCTTAGCCC
1 CTTCGGGTCTTAGCCC
50086886 AGTTATCATC
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 80 0.88
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:50091143 original size:68 final size:67
Alignment explanation
Indices: 50091071--50091220 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
50091061 CATCATGTGT
* * * *
50091071 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
50091133 ATGTAG
62 ATGTAG
** * *
50091139 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
50091204 AG
66 AG
50091206 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
50091221 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:50091176 original size:64 final size:64
Alignment explanation
Indices: 50091095--50091278 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
50091085 AGACATTATG
* *
50091095 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
50091159 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
50091224 AA
63 AA
* * * *
50091226 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
50091279 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:50094793 original size:64 final size:64
Alignment explanation
Indices: 50094712--50094895 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
50094702 AGACATTATG
* *
50094712 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
50094776 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGATAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
50094841 AA
63 AA
* * * *
50094843 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
50094896 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:50103272 original size:24 final size:23
Alignment explanation
Indices: 50103201--50103272 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
50103191 GCTTTATCAT
**
50103201 ATAACTGGAGGCCTAGCCTCTTTTG
1 ATAACTGG-GGCAAAGCC-CTTTTG
*
50103226 ATAACTGGGGCAAACCCCTTTTTG
1 ATAACTGGGGCAAAGCCC-TTTTG
*
50103250 GTAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
50103273 CGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.03
24 16 0.40
25 23 0.57
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTG
Found at i:50103342 original size:11 final size:11
Alignment explanation
Indices: 50103306--50103370 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
50103296 ACCCAACCTA
*
50103306 TGCATATAATG
1 TGCATATCATG
* *
50103317 AGTATATCAT-
1 TGCATATCATG
*
50103327 AGCATATCATG
1 TGCATATCATG
*
50103338 TGCATCTCAT-
1 TGCATATCATG
*
50103348 TACATATCATG
1 TGCATATCATG
50103359 TGCATATCATG
1 TGCATATCATG
50103370 T
1 T
50103371 ATAACAATAT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
10 17 0.40
11 26 0.60
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:50103347 original size:21 final size:20
Alignment explanation
Indices: 50103320--50103368 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
50103310 TATAATGAGT
50103320 ATATCATAGCATATCATGTGC
1 ATATCATA-CATATCATGTGC
*
50103341 ATCTCATTACATATCATGTGC
1 ATATCA-TACATATCATGTGC
50103362 ATATCAT
1 ATATCAT
50103369 GTATAACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.88
22 2 0.08
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
ATATCATACATATCATGTGC
Found at i:50103775 original size:21 final size:20
Alignment explanation
Indices: 50103720--50103776 Score: 96
Period size: 20 Copynumber: 2.8 Consensus size: 20
50103710 TGGGCCCAAA
*
50103720 AGCCCATTGGGCCTAATTCC
1 AGCCCATTGGGCCCAATTCC
50103740 AGCCCATTGGGCCCAATTCC
1 AGCCCATTGGGCCCAATTCC
50103760 AGCCCATTGAGGCCCAA
1 AGCCCATTG-GGCCCAA
50103777 CTTACCATCG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 28 0.80
21 7 0.20
ACGTcount: A:0.23, C:0.37, G:0.21, T:0.19
Consensus pattern (20 bp):
AGCCCATTGGGCCCAATTCC
Found at i:50106645 original size:13 final size:13
Alignment explanation
Indices: 50106627--50106653 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50106617 GGTTGTTTAT
50106627 TAAACTAATTAAC
1 TAAACTAATTAAC
50106640 TAAACTAATTAAC
1 TAAACTAATTAAC
50106653 T
1 T
50106654 GATTAAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:50109586 original size:6 final size:6
Alignment explanation
Indices: 50109577--50109639 Score: 74
Period size: 6 Copynumber: 10.5 Consensus size: 6
50109567 AATAAAATTG
* * *
50109577 AAATGA AAATAA AAATAA AAATAG AGATAA AAATAA AAATAA AATATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATAA
*
50109626 AAA-AG AAATAA AAA
1 AAATAA AAATAA AAA
50109640 GATAGGAGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
5 4 0.08
6 38 0.79
7 6 0.12
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:50113925 original size:25 final size:24
Alignment explanation
Indices: 50113893--50113983 Score: 137
Period size: 25 Copynumber: 3.7 Consensus size: 24
50113883 AACCAAAATA
50113893 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
* *
50113918 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTGAC
50113942 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTGAC
*
50113967 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
50113984 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 22 0.37
25 38 0.63
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTGAC
Found at i:50113928 original size:49 final size:49
Alignment explanation
Indices: 50113872--50113982 Score: 143
Period size: 49 Copynumber: 2.3 Consensus size: 49
50113862 AAGAAACATT
** *
50113872 ATCAGAATTGGAACCA-AAATAAGAATCAGAATCAGAATTAGGTGACAGA
1 ATCAGAATCAGAACCAGAAA-AAGAATCAGAATCAGAATTACGTGACAGA
* * *
50113921 ATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTACGTGACAGA
1 ATCAGAATCAGAACCAGAAAAAGAATCAGAATCAGAATTACGTGACAGA
*
50113970 ATCAGAACCAGAA
1 ATCAGAATCAGAA
50113983 TGTGAATGCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 52 0.96
50 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.17
Consensus pattern (49 bp):
ATCAGAATCAGAACCAGAAAAAGAATCAGAATCAGAATTACGTGACAGA
Found at i:50113976 original size:6 final size:6
Alignment explanation
Indices: 50113893--50113958 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
50113883 AACCAAAATA
* *
50113893 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
50113942 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
50113959 TACGTGACAG
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 43 0.84
7 4 0.08
8 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (6 bp):
AGAATC
Done.