Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 158 of 325
Found at i:50113983 original size:12 final size:11
Alignment explanation
Indices: 50113893--50113983 Score: 65
Period size: 12 Copynumber: 7.5 Consensus size: 11
50113883 AACCAAAATA
50113893 AGAATCAGAATC
1 AGAATCAGAA-C
* *
50113905 AGAATTAGGTGAC
1 AGAATCA-G-AAC
50113918 AGAATCAGAATC
1 AGAATCAGAA-C
50113930 AGAATCAGTAAC
1 AGAATCAG-AAC
50113942 AGAATCAGAATC
1 AGAATCAGAA-C
* *
50113954 AGAATTACGTGAC
1 AGAATCA-G-AAC
50113967 AGAATCAGAACC
1 AGAATCAGAA-C
50113979 AGAAT
1 AGAAT
50113984 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
11 4 0.06
12 39 0.62
13 18 0.29
14 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (11 bp):
AGAATCAGAAC
Found at i:50114214 original size:27 final size:27
Alignment explanation
Indices: 50114115--50114216 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
50114105 GCTCAGTTAT
* *
50114115 CAGATATTGTGACAGAGTCACCA-AATA
1 CAGATATTGTGGCAGAGCCACCAGAA-A
*
50114142 CAGATATTGTGGCAGAGCTACCAG-AA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
50114168 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
* *
50114196 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
50114217 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.11
27 50 0.77
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:50114402 original size:22 final size:22
Alignment explanation
Indices: 50114374--50114438 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
50114364 GCAAATATGT
*
50114374 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
50114396 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
50114418 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
50114439 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:50114921 original size:27 final size:27
Alignment explanation
Indices: 50114864--50115428 Score: 686
Period size: 27 Copynumber: 21.3 Consensus size: 27
50114854 AGGGCAAAAT
* * *
50114864 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* * *
50114890 GGTAATTCCACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50114917 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50114944 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50114971 AGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50114998 GATAATTCTACCCTTCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115025 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50115052 GGTAATTCTACCCTACAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
*
50115079 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115106 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115133 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
50115160 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50115187 GGTAATTCTACCCTACA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115206 GGTAATTCTACCGTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115233 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50115260 GGTAATTCTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115287 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50115314 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50115341 AGTAATTCTACCCTATAAGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50115368 GATAATTTTACCCTATAGCGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50115394 TAGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
50115422 GGTAATT
1 GGTAATT
50115429 TTGTAAACCA
Statistics
Matches: 470, Mismatches: 55, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.03
21 2 0.00
25 2 0.00
26 18 0.04
27 428 0.91
28 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50115211 original size:19 final size:19
Alignment explanation
Indices: 50115187--50115228 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
50115177 GGGGTATTTC
50115187 GGTAATTCTACCCTACAGG
1 GGTAATTCTACCCTACAGG
*
50115206 GGTAATTCTACCGTACAGG
1 GGTAATTCTACCCTACAGG
50115225 GGTA
1 GGTA
50115229 TTTCGATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (19 bp):
GGTAATTCTACCCTACAGG
Found at i:50115227 original size:46 final size:46
Alignment explanation
Indices: 50115160--50115309 Score: 192
Period size: 46 Copynumber: 3.1 Consensus size: 46
50115150 GGGGTATTTT
*
50115160 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGG
*
50115206 GGTAATTCTACCGTACAGGGGTATTTCGATAATTCTACCCTACAGGGG
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACA--GG
* *
50115254 TATTTCGGTAATTCTACCCTACAAGGGTATTACGATAATTCTACCCTACAGG
1 ------GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGG
50115306 GGTA
1 GGTA
50115310 TTTCGATAAT
Statistics
Matches: 91, Mismatches: 5, Indels: 16
0.81 0.04 0.14
Matches are distributed among these distances:
46 46 0.51
48 2 0.02
52 2 0.02
54 41 0.45
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (46 bp):
GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGG
Found at i:50115775 original size:27 final size:26
Alignment explanation
Indices: 50115413--50115790 Score: 206
Period size: 27 Copynumber: 14.1 Consensus size: 26
50115403 TACCCTACAG
* * *
50115413 GGGTATTTCGGTAATTTTGTAAACCAA
1 GGGTATTT-GGTAATTTTATAAATCGA
* * *
50115440 GGGCATTTTGGTAATTTTACAAA-CCA
1 GGGTA-TTTGGTAATTTTATAAATCGA
**
50115466 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTA-TTTGGTAATTTTATAAATCGA
* **
50115494 GGGTATTTAAGTAATTTTGCAAA-CTGA
1 GGGTATTT-GGTAATTTTATAAATC-GA
*
50115521 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTT-GGTAATTTTATAAATCGA
* *
50115548 GGATATTTGGGTAATTTTATAAATCGG
1 GGGTATTT-GGTAATTTTATAAATCGA
* * *
50115575 GGGTACTTTGGTAATTTTA-CAATTGG
1 GGGTA-TTTGGTAATTTTATAAATCGA
* *
50115601 GGGTATTTCAGTAATTTCAT-AATCGA
1 GGGTATTT-GGTAATTTTATAAATCGA
** *
50115627 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
**** * * *
50115654 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGT-ATTTGGTAATTTTATAAATCGA
** *
50115681 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
** *
50115708 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
**** *
50115735 GGGTGAAACAGTAATTCTATAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
* *
50115762 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTA-TTTGGTAATTTTATAAATCGA
50115789 GG
1 GG
50115791 ACATTTTAGT
Statistics
Matches: 284, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.01
26 41 0.14
27 231 0.81
28 9 0.03
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTATAAATCGA
Found at i:50115803 original size:81 final size:81
Alignment explanation
Indices: 50115621--50115811 Score: 211
Period size: 81 Copynumber: 2.4 Consensus size: 81
50115611 GTAATTTCAT
** * *
50115621 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
1 AATCGAGGACAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
*
50115686 AAATGGTAATTCTATA
66 AAATGGTAATTCTACA
** * * *
50115702 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATCGAGGGTA
1 AATCGAGGACAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
*** *
50115767 CTTTGGTAATTTTACA
66 AAATGGTAATTCTACA
* *** *
50115783 AATTGAGGACATTTTAGTAATTTGGTAAA
1 AATCGAGGACAAAATAGTAATTTTGTAAA
50115812 CTAAAGTATT
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 94 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (81 bp):
AATCGAGGACAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
AAATGGTAATTCTACA
Found at i:50117716 original size:13 final size:13
Alignment explanation
Indices: 50117698--50117724 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50117688 GGTTGTTTAT
50117698 TAAACTAATTAAC
1 TAAACTAATTAAC
50117711 TAAACTAATTAAC
1 TAAACTAATTAAC
50117724 T
1 T
50117725 GATTAAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:50118475 original size:24 final size:24
Alignment explanation
Indices: 50118448--50118495 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
50118438 AAAAGTTTTG
50118448 GAGGAGGGCCCCTTTCTAAGTCAT
1 GAGGAGGGCCCCTTTCTAAGTCAT
*
50118472 GAGGAGGTCCCCTTTCTAAGTCAT
1 GAGGAGGGCCCCTTTCTAAGTCAT
50118496 ACTCAGGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (24 bp):
GAGGAGGGCCCCTTTCTAAGTCAT
Found at i:50119848 original size:21 final size:20
Alignment explanation
Indices: 50119810--50119848 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
50119800 TCGAACTTAA
* *
50119810 CCTTCTTTTTGTTGAAACTT
1 CCTTCTTTTTCTTCAAACTT
50119830 CCTTCCTTTTTCTTCAAAC
1 CCTT-CTTTTTCTTCAAAC
50119849 ATTTCCCTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.15, C:0.28, G:0.05, T:0.51
Consensus pattern (20 bp):
CCTTCTTTTTCTTCAAACTT
Found at i:50121517 original size:27 final size:27
Alignment explanation
Indices: 50121465--50121517 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
50121455 TATTTTTGGG
*
50121465 TTTGATTTTGTAATAAGGGCACTTGAA
1 TTTGATTTTGTAATAAGGCCACTTGAA
* *
50121492 TTTGATTTTTTAATAAGGCCATTTGA
1 TTTGATTTTGTAATAAGGCCACTTGA
50121518 GGTTAACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (27 bp):
TTTGATTTTGTAATAAGGCCACTTGAA
Found at i:50130051 original size:40 final size:41
Alignment explanation
Indices: 50130006--50130277 Score: 351
Period size: 40 Copynumber: 6.8 Consensus size: 41
50129996 CATTTGAATG
* * *
50130006 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
50130046 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
50130086 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
50130126 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
50130166 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
50130206 TTATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
50130245 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
50130278 TGTGGTTATA
Statistics
Matches: 197, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
39 36 0.18
40 157 0.80
41 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:50130139 original size:80 final size:80
Alignment explanation
Indices: 50130006--50130277 Score: 474
Period size: 80 Copynumber: 3.4 Consensus size: 80
50129996 CATTTGAATG
* *
50130006 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
50130071 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
50130086 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
50130151 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
50130166 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
50130230 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGCT
*
50130245 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT
50130278 TGTGGTTATA
Statistics
Matches: 184, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 53 0.29
80 131 0.71
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:50137896 original size:40 final size:40
Alignment explanation
Indices: 50137852--50138150 Score: 349
Period size: 40 Copynumber: 7.5 Consensus size: 40
50137842 ATTTGAATGA
* * *
50137852 TATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
50137892 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TTTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * *
50137931 ATATCTGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTT
1 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * *
50137972 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
50138012 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
50138052 TATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
50138091 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
50138131 TATCCGGG-TAA-ACTCCGAAG
1 TATCCGGGCTAAGAC-CCGAAG
50138151 AAACTTGGGT
Statistics
Matches: 221, Mismatches: 30, Indels: 17
0.82 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 48 0.22
40 166 0.75
41 5 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:50138149 original size:79 final size:80
Alignment explanation
Indices: 50137851--50138150 Score: 453
Period size: 80 Copynumber: 3.8 Consensus size: 80
50137841 CATTTGAATG
* *
50137851 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
**
50137916 TTTGTGCGAGTTTTT
66 TTTGTGCGAGTTGAT
* *
50137931 ATATCTGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
50137996 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
50138011 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
50138075 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * *
50138090 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGG-TAA-ACTCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGAC-CCGAAG
50138151 AAACTTGGGT
Statistics
Matches: 203, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
77 1 0.00
78 3 0.01
79 72 0.35
80 127 0.63
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:50141606 original size:30 final size:29
Alignment explanation
Indices: 50141467--50141616 Score: 158
Period size: 29 Copynumber: 5.1 Consensus size: 29
50141457 TGTGCTAAAC
** * * *
50141467 GATGGTTGAAACCATCTCTTTTCATTAATC
1 GATGGTTGTCACCATCCCTTTTCA-TAGTT
** *
50141497 GATGGTCATCACCATCCCTTTTCAAAGTT
1 GATGGTTGTCACCATCCCTTTTCATAGTT
* * *
50141526 GATGGTCGTCACTATCTCTTTTCATAGTT
1 GATGGTTGTCACCATCCCTTTTCATAGTT
50141555 GATGGTTGTCACCATCCCTTTTCATAGTT
1 GATGGTTGTCACCATCCCTTTTCATAGTT
*
50141584 GATGGCTT-TTACCATCCCCTTTTCATAGTT
1 GATGG-TTGTCACCAT-CCCTTTTCATAGTT
50141614 GAT
1 GAT
50141617 AGTCAAAAAC
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
29 64 0.63
30 38 0.37
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (29 bp):
GATGGTTGTCACCATCCCTTTTCATAGTT
Found at i:50142800 original size:22 final size:22
Alignment explanation
Indices: 50142761--50142810 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
50142751 CCTTTAGCCA
* *
50142761 TCCTGTCTATGACGTTGAG-CTG
1 TCCTGTCTACGACATTGAGTC-G
*
50142783 TCCTGTCTACGATATTGAGTCG
1 TCCTGTCTACGACATTGAGTCG
50142805 TCCTGT
1 TCCTGT
50142811 TGACTTAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (22 bp):
TCCTGTCTACGACATTGAGTCG
Found at i:50146277 original size:22 final size:22
Alignment explanation
Indices: 50146249--50146303 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
50146239 TACGGCCTTT
50146249 AGCCATCCTGTCTACTG-CGTTA
1 AGCCATCCTGTCTAC-GACGTTA
*
50146271 AGCCATCCTGTCTACGATGTTA
1 AGCCATCCTGTCTACGACGTTA
*
50146293 AGCCTTCCTGT
1 AGCCATCCTGT
50146304 TGACTTAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 1 0.03
22 29 0.97
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (22 bp):
AGCCATCCTGTCTACGACGTTA
Found at i:50147267 original size:29 final size:29
Alignment explanation
Indices: 50147209--50147279 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
50147199 GGTCATTACC
* * **
50147209 ATTCCTTTTCATAGTTGATGGTTGCCACT
1 ATTCCTTTTCATAGTTGATAGTCGAAACT
*
50147238 ATTCCTTTTCATCGTTGATAGTCGAAACT
1 ATTCCTTTTCATAGTTGATAGTCGAAACT
50147267 A-TCCATTTTCATA
1 ATTCC-TTTTCATA
50147280 TTCGATGCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.44
Consensus pattern (29 bp):
ATTCCTTTTCATAGTTGATAGTCGAAACT
Found at i:50171605 original size:28 final size:28
Alignment explanation
Indices: 50171542--50171692 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
50171532 ATATTAAGTC
*
50171542 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50171569 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50171597 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50171625 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50171653 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50171682 CGCACACTTAG
1 CGCACACTTAG
50171693 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50179668 original size:28 final size:28
Alignment explanation
Indices: 50179607--50179755 Score: 210
Period size: 28 Copynumber: 5.3 Consensus size: 28
50179597 ATTAAGTCCA
* *
50179607 CACACTCAGTGCTATATAATC-AACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
50179634 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
50179662 CACACTTAGTGCTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
50179690 CACACTTAGTGCTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * * *
50179718 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
50179747 CACACTTAG
1 CACACTTAG
50179756 CGCCAATCTC
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
27 20 0.18
28 76 0.68
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:50184998 original size:33 final size:34
Alignment explanation
Indices: 50184949--50185016 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
50184939 AGCCCAGATA
* *
50184949 AGTAACAGTCTTGGCCTGAGCCCATTACAG-AAC
1 AGTAACAGTCTGGGCCTGAGCCCAATACAGTAAC
* *
50184982 AGTAACAGTGTGGGCCTTAGCCCAATACAGTAAC
1 AGTAACAGTCTGGGCCTGAGCCCAATACAGTAAC
50185016 A
1 A
50185017 ATACAGTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 26 0.87
34 4 0.13
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (34 bp):
AGTAACAGTCTGGGCCTGAGCCCAATACAGTAAC
Found at i:50185150 original size:26 final size:26
Alignment explanation
Indices: 50185117--50185211 Score: 93
Period size: 26 Copynumber: 3.6 Consensus size: 26
50185107 CCAACACACC
*
50185117 AATATTGTAGCAAAGCTGCTAGTAAT
1 AATATTGTAGCAAAGCTGCCAGTAAT
50185143 AATATTGTAGCAAAGCTGCCAGT-AT
1 AATATTGTAGCAAAGCTGCCAGTAAT
* ** * *
50185168 CAGTAACGCAGCAAAGCTGCCAGTAAC
1 -AATATTGTAGCAAAGCTGCCAGTAAT
* *
50185195 AGTATATGTGGCAAAGC
1 AATAT-TGTAGCAAAGC
50185212 CACTAGTAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.04
26 45 0.80
27 9 0.16
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
AATATTGTAGCAAAGCTGCCAGTAAT
Found at i:50189470 original size:6 final size:6
Alignment explanation
Indices: 50189440--50189487 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
50189430 TTCACAATAA
* *
50189440 AATACTC AAT-TC AATTTC GATATC AATATC AATATC AATATC AATATC
1 AATA-TC AATATC AATATC AATATC AATATC AATATC AATATC AATATC
50189488 CATTTCATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.14
6 29 0.78
7 3 0.08
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (6 bp):
AATATC
Found at i:50190697 original size:11 final size:12
Alignment explanation
Indices: 50190662--50190699 Score: 51
Period size: 11 Copynumber: 3.1 Consensus size: 12
50190652 TGTTTAATTC
50190662 TAATAATAATATAA
1 TAAT-ATAATAT-A
50190676 TAATATAATAT-
1 TAATATAATATA
50190687 TAATATAATATA
1 TAATATAATATA
50190699 T
1 T
50190700 TTACTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.48
12 1 0.04
13 7 0.30
14 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATATAATATA
Found at i:50192515 original size:60 final size:60
Alignment explanation
Indices: 50192444--50192563 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
50192434 ATTTCTTATT
* *
50192444 TTCTTAGAAGTCTTTCCTTAGTAGAATTACTTTCTTAACAAGTTTTAAATTTCAGTTGAA
1 TTCTTAAAAGTCTTTCCTTAGTAGAATTACTTTCTTAACAAGTTTTAAATTTCAATTGAA
*
50192504 TTCTTAAAAGTCTTTCCTTAGTAGAATTACTTTCTTAGCAAGTTTTAAATTTCAATTGAA
1 TTCTTAAAAGTCTTTCCTTAGTAGAATTACTTTCTTAACAAGTTTTAAATTTCAATTGAA
50192564 CTCTATAATC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (60 bp):
TTCTTAAAAGTCTTTCCTTAGTAGAATTACTTTCTTAACAAGTTTTAAATTTCAATTGAA
Found at i:50195844 original size:43 final size:46
Alignment explanation
Indices: 50195773--50195906 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 46
50195763 GAGATATGTG
* *
50195773 GCATCCGAGCTCATTTAGAGGTCTGAGTTCATTATGGATGC-A-A-
1 GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGATAT
* * **
50195816 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCACGATGGATGCGATTCAT
1 GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGA-T-AT
*
50195864 GTAACATCCGAGCTCGTTGAGAGGTTTGAGTTCATTATGGATG
1 G---CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
50195907 TGTTACATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
43 35 0.49
44 1 0.01
47 1 0.01
48 1 0.01
51 34 0.47
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGATAT
Found at i:50199384 original size:46 final size:46
Alignment explanation
Indices: 50199265--50199577 Score: 188
Period size: 46 Copynumber: 6.6 Consensus size: 46
50199255 TGAGAACCAA
* * * ** *
50199265 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGA-CAAGAGCTAG
1 TGTAAGACCATGTCTGGGACA-GGCATC-GCCTCGAGATGTA-AGCCAG
* *
50199313 TGTAAGA-CATGTCTGGGAGATGCATCAGCCTCGAGATGTAAGCCAG
1 TGTAAGACCATGTCTGGGACAGGCATC-GCCTCGAGATGTAAGCCAG
* * * * *
50199359 TGTAAGA-CATGTCTGGGACAAGCATCGGCTACAAAATGT--GTCAG
1 TGTAAGACCATGTCTGGGACAGGCATCGCCT-CGAGATGTAAGCCAG
* * * * * * *
50199403 TGTAAGACCATGTATGGGACATGACATTGGCACGGATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACA-GGCATCGCCTC-GAGATGT-A-AGCCAG
* ** *
50199453 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGA-CAATAGTCAG
1 TGTAAGACCATGTCTGGGACA-GGCATC-GCCTCGA-GATGTA-AGCCAG
* * * * *
50199502 TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATTAGCCTG
1 TGTAAGACCATGTCTGGGACA-GGCATCGCCTCGAGATGTAAGCCAG
50199549 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACA-GGCATCG
50199578 GCACCTTACC
Statistics
Matches: 209, Mismatches: 44, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
44 11 0.05
45 16 0.08
46 58 0.28
47 47 0.22
48 12 0.06
49 32 0.15
50 29 0.14
51 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACAGGCATCGCCTCGAGATGTAAGCCAG
Found at i:50199569 original size:96 final size:95
Alignment explanation
Indices: 50199265--50199579 Score: 308
Period size: 96 Copynumber: 3.3 Consensus size: 95
50199255 TGAGAACCAA
* * *
50199265 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACAAGAG-CTAGTGTAAGA-CATGTCTG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGACAATAGTC-AGTGTAAGACCATGTCTG
* * * * *
50199328 GGAGAT-GCATCAGCCTCGAGATGTAAGCCAG
65 GGACATGGCATC-GACTCGAGATATTAGCCTG
* * * *
50199359 TGTAAGA-CATGTCTGGGACA-AGCATCGG-CTAC-A-A-AATGTGTCAGTGTAAGACCATGTAT
1 TGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGACAAT-AGTCAGTGTAAGACCATGTCT
* * * * *
50199418 GGGACATGACATTGGCACG-GATATGTGAGAGCTAG
64 GGGACATGGCATCGACTCGAGATAT-T-AG-CCT-G
50199453 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGACAATAGTCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA-GACAATAGTCAGTGTAAGACCATGTCTG
*
50199518 GGACATGGCATCGACTTGAGATATTAGCCTG
65 GGACATGGCATCGACTCGAGATATTAGCCTG
*
50199549 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTAGGACATGGCATCGGC
50199580 ACCTTACCCA
Statistics
Matches: 177, Mismatches: 27, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
89 2 0.01
90 15 0.08
91 19 0.11
92 12 0.07
93 13 0.07
94 15 0.08
95 12 0.07
96 39 0.22
97 5 0.03
98 2 0.01
99 35 0.20
100 8 0.05
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (95 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGACAATAGTCAGTGTAAGACCATGTCTGG
GACATGGCATCGACTCGAGATATTAGCCTG
Found at i:50207823 original size:39 final size:40
Alignment explanation
Indices: 50207709--50207890 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
50207699 GCTACTCGTT
*
50207709 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50207749 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
50207789 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
50207828 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50207869 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
50207891 AGACATCATT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 76 0.62
41 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50207853 original size:79 final size:80
Alignment explanation
Indices: 50207711--50207890 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 80
50207701 TACTCGTTCA
* * *
50207711 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
* *
50207776 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
50207791 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* *
50207853 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
50207870 AAAGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
50207891 AGACATCATT
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.69
80 24 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:50213849 original size:79 final size:81
Alignment explanation
Indices: 50213740--50213922 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
50213730 TACTCGTTCA
* *
50213740 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
50213803 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
50213820 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
50213883 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
50213899 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
50213923 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:50213922 original size:40 final size:40
Alignment explanation
Indices: 50213719--50213922 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
50213709 CGGAATTTAA
** *
50213719 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50213759 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50213799 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50213838 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50213878 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50213918 CCGGA
1 CCGGA
50213923 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50222760 original size:46 final size:47
Alignment explanation
Indices: 50222641--50222908 Score: 166
Period size: 46 Copynumber: 5.7 Consensus size: 47
50222631 TTTGTGCGCT
* **
50222641 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-TCGAGATGTAAACC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACAT--AGATGT-AGTC
*
50222687 TGTGTAAGA-CATGTCT-GTGACAT-GCATCGGCTACA-AGATGT-GTC
1 AGTGTAAGACCATGTCTAG-GACATGGCATCGGC-ACATAGATGTAGTC
* *
50222731 AGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAGAGGT-GTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC--ATAGATGTAGTC
* * * * *
50222779 AGTGTAAAACCATGT-TGGGGACATGGCATTGGCACATATATGTGAGAGC
1 AGTGTAAGACCATGTCT-AGGACATGGCATCGGCACATAGATGT-AG-TC
* * *
50222828 TAGTGTAAGACCATGTCTAGGACATGGCGTCGGC-C-TCGATTTTGATAGTT
1 -AGTGTAAGACCATGTCTAGGACATGGCATCGGCACATAGA---TG-TAGTC
* *
50222878 AGTGTAAGACCATGTCTGGGCCATGGCATCG
1 AGTGTAAGACCATGTCTAGGACATGGCATCG
50222909 ACTTGATGGA
Statistics
Matches: 178, Mismatches: 24, Indels: 37
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.05
45 15 0.08
46 48 0.27
47 2 0.01
48 41 0.23
49 30 0.17
50 27 0.15
51 5 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCACATAGATGTAGTC
Found at i:50222791 original size:48 final size:50
Alignment explanation
Indices: 50222726--50222907 Score: 153
Period size: 48 Copynumber: 3.7 Consensus size: 50
50222716 GCTACAAGAT
*
50222726 GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATA-GAG-
1 GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACATATATGAGA
* * ** *
50222774 GTGTCAGTGTAAAACCATGT-TGGGGACATGGCATTGGCACATATATGTGA
1 GTGTCAGTGTAAGACCATGTCT-AGGACATGGCATCAGCACATATATGAGA
* * * * * *
50222824 GAG-CTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGAT-TTTGATA
1 GTGTC-AGTGTAAGACCATGTCTAGGACATGGCATCAG-CAC-ATATATGAGA
* *
50222875 GT-T-AGTGTAAGACCATGTCTGGGCCATGGCATC
1 GTGTCAGTGTAAGACCATGTCTAGGACATGGCATC
50222908 GACTTGATGG
Statistics
Matches: 107, Mismatches: 19, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
47 1 0.01
48 38 0.36
49 30 0.28
50 28 0.26
51 8 0.07
52 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (50 bp):
GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACATATATGAGA
Found at i:50224578 original size:27 final size:27
Alignment explanation
Indices: 50224548--50224725 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
50224538 ATATTGAGTC
* * *
50224548 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
50224575 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
50224602 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
50224630 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50224657 CGCACACTTAGTGC-ATCATATTC-ACTT
1 CGCACACTTAGTGCTA-CATAGTCAAC-T
* *
50224684 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
50224711 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50224726 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50224687 original size:82 final size:81
Alignment explanation
Indices: 50224569--50224724 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50224559 TGCTATATAA
* *
50224569 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50224634 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50224651 TCAATTCGCACACTTAGTGC-ATCATATTCACTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50224715 CACTTAGTGC
65 CACTTAGTGC
50224725 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50237667 original size:27 final size:27
Alignment explanation
Indices: 50237637--50237814 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50237627 ATATTGAGTC
* * * *
50237637 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50237664 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50237691 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50237719 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50237746 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50237773 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50237800 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50237815 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50237776 original size:82 final size:81
Alignment explanation
Indices: 50237658--50237813 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50237648 TGCTATATAA
* *
50237658 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50237723 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50237740 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50237804 CACTTAGTGC
65 CACTTAGTGC
50237814 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50245692 original size:27 final size:27
Alignment explanation
Indices: 50245662--50245839 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50245652 ATATTGAGTC
* * * *
50245662 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50245689 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50245716 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50245744 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50245771 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50245798 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50245825 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50245840 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50245801 original size:82 final size:81
Alignment explanation
Indices: 50245683--50245838 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50245673 TGCTATATAA
* *
50245683 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50245748 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50245765 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50245829 CACTTAGTGC
65 CACTTAGTGC
50245839 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50253160 original size:59 final size:59
Alignment explanation
Indices: 50253060--50253186 Score: 182
Period size: 59 Copynumber: 2.2 Consensus size: 59
50253050 TGCATTGATT
* * * * *
50253060 TTTTTAATATATTTGTACAAGTTGTTTTTATATTGTTTCATTTAATAAAACAGAAGTTG
1 TTTTGAATATATTTGTACAAATTATTTTTATATTGTGTCATTTAATAAAACAGAAGTTC
* * *
50253119 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTGTCATTTAATAAAATATAAGTTC
1 TTTTGAATATATTTGTACAAATTATTTTTATATTGTGTCATTTAATAAAACAGAAGTTC
50253178 TTTTGAATA
1 TTTTGAATA
50253187 AGACAATACA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (59 bp):
TTTTGAATATATTTGTACAAATTATTTTTATATTGTGTCATTTAATAAAACAGAAGTTC
Found at i:50253197 original size:59 final size:59
Alignment explanation
Indices: 50253075--50253226 Score: 171
Period size: 59 Copynumber: 2.6 Consensus size: 59
50253065 AATATATTTG
* * * ******
50253075 TACAAGTTGTTTTTATATTGTTTCATTTAATAAAACAGAAGTTGTTTTGAATATTTTTG
1 TACAAATTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTCTTTTGAATAAGACAA
* * *
50253134 TACAAATTATTTTTATATTGTGTCATTTAATAAAATATAAGTTCTTTTGAATAAGACAA
1 TACAAATTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTCTTTTGAATAAGACAA
*
50253193 TACAAATTATTTTT-TCATAGTTTCATTTAATAAA
1 TACAAATTATTTTTAT-ATTGTTTCATTTAATAAA
50253227 TTATGAACTA
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
58 1 0.01
59 77 0.99
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (59 bp):
TACAAATTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTCTTTTGAATAAGACAA
Found at i:50256222 original size:24 final size:25
Alignment explanation
Indices: 50256156--50256224 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
50256146 CAACTTATAC
* * **
50256156 CTTCTCAACTTCTTTAATTCCTATT
1 CTTCTGAACTTCTTCAATTTATATT
50256181 CTTCTGAACTTCTTCAATTTATATT
1 CTTCTGAACTTCTTCAATTTATATT
50256206 CTTCTGAA-TTCTTCAATTT
1 CTTCTGAACTTCTTCAATTT
50256225 CTCTTATTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 11 0.28
25 29 0.73
ACGTcount: A:0.22, C:0.23, G:0.03, T:0.52
Consensus pattern (25 bp):
CTTCTGAACTTCTTCAATTTATATT
Found at i:50256547 original size:126 final size:125
Alignment explanation
Indices: 50256322--50256620 Score: 413
Period size: 126 Copynumber: 2.4 Consensus size: 125
50256312 TGAAAAGAGC
* * * *
50256322 GTCCAATTGGGAGCTTTTTTCGGTACTTTTGCTAACAGTGCATCCTACTTGAAGCGTTTTTCAAC
1 GTCCAATTGGGAGCTTTTTTCAGTACTTTTGATGACAGTGCATCCTACTTGAAGCATTTTTCAAC
* * *
50256387 TTATTTTTTCAGAACTAACTTCTCAAAATTATTTTTTCAAAATAAACTATGCAAAAAAAAA
66 CTATTTTTTCAGAACCAACTTCTCAAAATTATTTTTTCAAAATAAACTATAC-AAAAAAAA
* * * * *
50256448 GTCCAACTGGGAGCCTTTTTCAGTACTTTTGTTGACAATGCATCCTGCTTGAAGCATTTTTCAAC
1 GTCCAATTGGGAGCTTTTTTCAGTACTTTTGATGACAGTGCATCCTACTTGAAGCATTTTTCAAC
* * *
50256513 CTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAATCAACTATACAAAAAAAA
66 CTATTTTTTCAGAACCAACTTCTCAAAATTATTTTTTCAAAATAAACTATACAAAAAAAA
* * *
50256573 -TCCAGTTGGGAG-TTTTTTCAGTAATTTTGATGACAGTGCATTCTACTT
1 GTCCAATTGGGAGCTTTTTTCAGTACTTTTGATGACAGTGCATCCTACTT
50256621 ACAGTGTTTT
Statistics
Matches: 151, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
123 30 0.20
124 10 0.07
125 8 0.05
126 103 0.68
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (125 bp):
GTCCAATTGGGAGCTTTTTTCAGTACTTTTGATGACAGTGCATCCTACTTGAAGCATTTTTCAAC
CTATTTTTTCAGAACCAACTTCTCAAAATTATTTTTTCAAAATAAACTATACAAAAAAAA
Found at i:50256567 original size:28 final size:28
Alignment explanation
Indices: 50256514--50256568 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
50256504 TTTTTCAACC
* *
50256514 TATTTTTTCAGAACCATCTTCTCAAAAT
1 TATTTTTTCAGAACCAACTTCACAAAAT
*
50256542 TATTTTTTCAGAATCAACTAT-ACAAAA
1 TATTTTTTCAGAACCAACT-TCACAAAA
50256569 AAAATCCAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (28 bp):
TATTTTTTCAGAACCAACTTCACAAAAT
Found at i:50256881 original size:28 final size:28
Alignment explanation
Indices: 50256841--50256908 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
50256831 TAAAAAACCC
*
50256841 TAAAACCCCTAAACCCAAATTTATTTTT
1 TAAAAACCCTAAACCCAAATTTATTTTT
* **
50256869 TAAAAACCCTAAATCTTAATTTATTTTT
1 TAAAAACCCTAAACCCAAATTTATTTTT
* *
50256897 TCAACACCCTAA
1 TAAAAACCCTAA
50256909 CCCTAAACCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.37
Consensus pattern (28 bp):
TAAAAACCCTAAACCCAAATTTATTTTT
Found at i:50257561 original size:23 final size:24
Alignment explanation
Indices: 50257507--50257562 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
50257497 TTTTTTTATT
* *
50257507 TTTTTATTTATATTTTTGTGCTTA
1 TTTTTATTTATATTTTTGTACCTA
* * *
50257531 ATTGTATTT-TCTTTTTGTACCTA
1 TTTTTATTTATATTTTTGTACCTA
50257554 TTTTTATTT
1 TTTTTATTT
50257563 GAACTAAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70
Consensus pattern (24 bp):
TTTTTATTTATATTTTTGTACCTA
Found at i:50263457 original size:43 final size:43
Alignment explanation
Indices: 50263409--50263584 Score: 257
Period size: 43 Copynumber: 4.1 Consensus size: 43
50263399 CCGGCATTAC
* *
50263409 GCCTGCTAGGCACGAAGGCCCGAATACTCATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
* *
50263452 GCCTGCTGGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
* *
50263495 GCTTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
* * *
50263538 GCCTACTAGGCACGAAGGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
50263579 GCCTGC
1 GCCTGC
50263585 GGGATTTATC
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 14 0.12
42 2 0.02
43 105 0.87
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
Found at i:50263604 original size:38 final size:38
Alignment explanation
Indices: 50263556--50263639 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
50263546 GGCACGAAGG
* * *
50263556 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACAAAGCCTGCGGGATTTAA
*
50263594 CCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACAAAGCCTGCGGGATTTAA
50263632 CCCGAATA
1 CCCGAATA
50263640 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACAAAGCCTGCGGGATTTAA
Found at i:50266905 original size:48 final size:48
Alignment explanation
Indices: 50266843--50267171 Score: 568
Period size: 48 Copynumber: 6.9 Consensus size: 48
50266833 TATATATGTG
50266843 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
50266891 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
50266939 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
50266987 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
50267035 TTTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
50267083 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
50267131 TGTGGTAACGCCGAATGGCTAGTGTGAACTATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
50267172 GTGTGTATAT
Statistics
Matches: 272, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 272 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:50267362 original size:37 final size:37
Alignment explanation
Indices: 50267312--50267414 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
50267302 GGAAATATAT
50267312 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
50267349 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
50267386 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
50267415 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50271522 original size:12 final size:11
Alignment explanation
Indices: 50271500--50271527 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
50271490 CATCATTACC
50271500 TTTTTTCTTTT
1 TTTTTTCTTTT
50271511 TTTTTTCTTTT
1 TTTTTTCTTTT
50271522 TTTTTT
1 TTTTTT
50271528 ATCTCAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:50272287 original size:15 final size:16
Alignment explanation
Indices: 50272258--50272291 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
50272248 ACTTCGACTC
50272258 TTTGTTTTTTCTTTTT
1 TTTGTTTTTTCTTTTT
50272274 TTTGTTTTTGT-TTTTT
1 TTTGTTTTT-TCTTTTT
50272290 TT
1 TT
50272292 AAGTATCCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.94
17 1 0.06
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (16 bp):
TTTGTTTTTTCTTTTT
Found at i:50279147 original size:8 final size:8
Alignment explanation
Indices: 50279134--50279184 Score: 57
Period size: 8 Copynumber: 5.9 Consensus size: 8
50279124 TTTAAGATTT
50279134 ATTATAAA
1 ATTATAAA
50279142 ATTATAAA
1 ATTATAAA
50279150 ATTATTAAAA
1 ATTA-T-AAA
*
50279160 ATTTATCAA
1 A-TTATAAA
50279169 ATTATAAA
1 ATTATAAA
50279177 ATCTATAA
1 AT-TATAA
50279185 GAAGTATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
8 20 0.54
9 9 0.24
10 5 0.14
11 3 0.08
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (8 bp):
ATTATAAA
Found at i:50279156 original size:19 final size:19
Alignment explanation
Indices: 50279132--50279206 Score: 66
Period size: 19 Copynumber: 4.0 Consensus size: 19
50279122 TTTTTAAGAT
50279132 TTATTATAAAA-TTATAAAA
1 TTATTA-AAAATTTATAAAA
*
50279151 TTATTAAAAATTTATCAAA
1 TTATTAAAAATTTATAAAA
*
50279170 TTA-T-AAAATCTATAAGAA
1 TTATTAAAAATTTATAA-AA
* * *
50279188 GTATTAAAACTATATAAAA
1 TTATTAAAAATTTATAAAA
50279207 AAAAGACATA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
17 9 0.20
18 9 0.20
19 19 0.41
20 9 0.20
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (19 bp):
TTATTAAAAATTTATAAAA
Found at i:50279517 original size:28 final size:28
Alignment explanation
Indices: 50279469--50279548 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
50279459 TTGTGCATTT
* ** *
50279469 TTATAATTTTATTTTTTTATAATTTTTAC
1 TTATGATTTTATAATTTTATAAATTTT-C
50279498 TT-T-ATTTTGATAATTTTATAAATTTTC
1 TTATGATTTT-ATAATTTTATAAATTTTC
* *
50279525 TTATGATTTTATAATCTCATAAAT
1 TTATGATTTTATAATTTTATAAAT
50279549 GAATATAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
27 8 0.19
28 28 0.65
29 7 0.16
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (28 bp):
TTATGATTTTATAATTTTATAAATTTTC
Found at i:50280418 original size:21 final size:21
Alignment explanation
Indices: 50280393--50280435 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50280383 GAAATTTCCA
**
50280393 TGTAAAAATTCAAGTTTTTCT
1 TGTAAAAACCCAAGTTTTTCT
*
50280414 TGTAAAAACCCATGTTTTTCT
1 TGTAAAAACCCAAGTTTTTCT
50280435 T
1 T
50280436 TATAAAGACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (21 bp):
TGTAAAAACCCAAGTTTTTCT
Found at i:50286510 original size:31 final size:31
Alignment explanation
Indices: 50286472--50286533 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
50286462 GTTGTTAGGC
*
50286472 GTATTTTAGGTAGTATAAAAAATTAATAAGG
1 GTATTTTAGGTAGTATAAAAAATCAATAAGG
* *
50286503 GTATTTTAGGTAGTATCAATAATCAATAAGG
1 GTATTTTAGGTAGTATAAAAAATCAATAAGG
50286534 ATAATTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (31 bp):
GTATTTTAGGTAGTATAAAAAATCAATAAGG
Found at i:50289549 original size:144 final size:144
Alignment explanation
Indices: 50289289--50289569 Score: 508
Period size: 144 Copynumber: 2.0 Consensus size: 144
50289279 GATCATCTAA
* * *
50289289 GACTTCGTTACCAAGTCTCTAGATACGCACACGACTAAAAAAGAAAATCAAGATTTACTTTCTTG
1 GACTTCGTTACCAAGTCCCTAGATACGCACACAACTAAAAAAGAAAATCAAGATTCACTTTCTTG
*
50289354 TTTTCAAGAAAATTAAGAAACTAAATCTTGGTCAAATTTTATTGTTTCAGACAATTTCAAGAATC
66 TTTTCAAGAAAATTAAGAAACTAAACCTTGGTCAAATTTTATTGTTTCAGACAATTTCAAGAATC
50289419 AAGATTTCAAAGAT
131 AAGATTTCAAAGAT
*
50289433 GACTTCGTTACCAAGTCCCTAGATACGCACACAACTGAAAAAGAAAATCAAGATTCACTTTCTTG
1 GACTTCGTTACCAAGTCCCTAGATACGCACACAACTAAAAAAGAAAATCAAGATTCACTTTCTTG
*
50289498 TTTTCAAGAAAATTAAGAAACTAAACCTTGGTCAAATTTTGTTGTTTCAGACAATTTCAAGAATC
66 TTTTCAAGAAAATTAAGAAACTAAACCTTGGTCAAATTTTATTGTTTCAGACAATTTCAAGAATC
50289563 AAGATTT
131 AAGATTT
50289570 TAAATTTTGG
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 131 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (144 bp):
GACTTCGTTACCAAGTCCCTAGATACGCACACAACTAAAAAAGAAAATCAAGATTCACTTTCTTG
TTTTCAAGAAAATTAAGAAACTAAACCTTGGTCAAATTTTATTGTTTCAGACAATTTCAAGAATC
AAGATTTCAAAGAT
Found at i:50292367 original size:17 final size:18
Alignment explanation
Indices: 50292330--50292367 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
50292320 TATTAATTGA
*
50292330 TTATATATTAATTTATAT
1 TTATATATTAATATATAT
*
50292348 TTATATA-TAATATATTT
1 TTATATATTAATATATAT
50292365 TTA
1 TTA
50292368 ATTTCTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATATATTAATATATAT
Found at i:50292596 original size:12 final size:12
Alignment explanation
Indices: 50292579--50292603 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50292569 GAAGGCGAAA
50292579 ATGTAAGTAATT
1 ATGTAAGTAATT
50292591 ATGTAAGTAATT
1 ATGTAAGTAATT
50292603 A
1 A
50292604 CACCTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (12 bp):
ATGTAAGTAATT
Found at i:50294000 original size:17 final size:17
Alignment explanation
Indices: 50293978--50294097 Score: 59
Period size: 17 Copynumber: 6.8 Consensus size: 17
50293968 TTTAACTATT
50293978 TTTTTTATAATTTTAAA
1 TTTTTTATAATTTTAAA
* *
50293995 TTTTTTAGAATTTAATTAA
1 TTTTTTATAATTT--TAAA
* *
50294014 TCTTTTAT-ATTTTTAA
1 TTTTTTATAATTTTAAA
* **
50294030 TTTTTCTATACTTTTTGGA
1 TTTTT-TATA-ATTTTAAA
*
50294049 TTTTTT-TACGTTTCT-AA
1 TTTTTTATA-ATTT-TAAA
*
50294066 TATTTTAT-ATTTTAAA
1 TTTTTTATAATTTTAAA
50294082 TTTTTCTATACATTTT
1 TTTTT-TATA-ATTTT
50294098 CTTAACTTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
15 1 0.01
16 17 0.22
17 30 0.38
18 7 0.09
19 24 0.30
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTTATAATTTTAAA
Found at i:50294151 original size:19 final size:19
Alignment explanation
Indices: 50294129--50294171 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
50294119 AATATTATTT
*
50294129 ATTTTTATAAAAATTTTGA
1 ATTTTTATAAAAATTTAGA
* *
50294148 ATTTTTATATATATTTAGA
1 ATTTTTATAAAAATTTAGA
50294167 ATTTT
1 ATTTT
50294172 AGGATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
ATTTTTATAAAAATTTAGA
Found at i:50295213 original size:16 final size:15
Alignment explanation
Indices: 50295194--50295242 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 15
50295184 TACAAATTAT
50295194 TAAAAATACAAAAAAA
1 TAAAAATA-AAAAAAA
50295210 T-AAAATAAAAAAATTA
1 TAAAAATAAAAAAA--A
50295226 TAAAAAATAAAAAAAA
1 T-AAAAATAAAAAAAA
50295242 T
1 T
50295243 TACTATGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 6 0.21
15 6 0.21
16 5 0.17
18 12 0.41
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAAAATAAAAAAAA
Found at i:50295221 original size:23 final size:22
Alignment explanation
Indices: 50295195--50295241 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
50295185 ACAAATTATT
50295195 AAAAA-TACAAAAAAATAAAATAA
1 AAAAATTA-AAAAAAATAAAA-AA
*
50295218 AAAAATTATAAAAAATAAAAAA
1 AAAAATTAAAAAAAATAAAAAA
50295240 AA
1 AA
50295242 TTACTATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 16 0.73
24 2 0.09
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (22 bp):
AAAAATTAAAAAAAATAAAAAA
Found at i:50297584 original size:17 final size:17
Alignment explanation
Indices: 50297562--50297596 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
50297552 AACTGGAAAA
50297562 ACATGTTATATATTTTT
1 ACATGTTATATATTTTT
50297579 ACATGTTATATATTTTT
1 ACATGTTATATATTTTT
50297596 A
1 A
50297597 GTTTCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (17 bp):
ACATGTTATATATTTTT
Found at i:50298126 original size:20 final size:19
Alignment explanation
Indices: 50298103--50298171 Score: 79
Period size: 20 Copynumber: 3.6 Consensus size: 19
50298093 ATTACAAAAC
50298103 AAAATTTAAAATAATTTTCA
1 AAAATTTAAAATAATTTT-A
*
50298123 AAAATTTAAAATAAATTT-
1 AAAATTTAAAATAATTTTA
*
50298141 AAAATTCAAAAT-ATTTATAA
1 AAAATTTAAAATAATTT-T-A
50298161 AAAATTTAAAA
1 AAAATTTAAAA
50298172 ATTTATATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
17 3 0.07
18 12 0.29
20 27 0.64
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTTAAAATAATTTTA
Found at i:50298140 original size:11 final size:11
Alignment explanation
Indices: 50298104--50298145 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
50298094 TTACAAAACA
50298104 AAATTTAAAAT
1 AAATTTAAAAT
**
50298115 -AATTTTCAA-
1 AAATTTAAAAT
50298124 AAATTTAAAAT
1 AAATTTAAAAT
50298135 AAATTTAAAAT
1 AAATTTAAAAT
50298146 TCAAAATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 14 0.56
11 11 0.44
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (11 bp):
AAATTTAAAAT
Found at i:50298146 original size:38 final size:35
Alignment explanation
Indices: 50298103--50298224 Score: 106
Period size: 36 Copynumber: 3.3 Consensus size: 35
50298093 ATTACAAAAC
50298103 AAAATTTAAAATAATTTTCAAAAATTTAAAATAAATTT
1 AAAATTTAAAATAATTTT-AAAAATTT-AAA-AAATTT
*
50298141 AAAATTCAAAAT-ATTTATAAAAAATTT-AAAAATTT
1 AAAATTTAAAATAATTT-T-AAAAATTTAAAAAATTT
** * *
50298176 ATATTTTTAAAA-AATTCTAAAAATTATATAAAAAGTT
1 A-AAATTTAAAATAATTTTAAAAATT-TA-AAAAATTT
50298213 AAAATTTAAAAT
1 AAAATTTAAAAT
50298225 TTTTTCTAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
34 7 0.10
35 9 0.13
36 20 0.29
37 12 0.18
38 20 0.29
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (35 bp):
AAAATTTAAAATAATTTTAAAAATTTAAAAAATTT
Found at i:50298156 original size:27 final size:26
Alignment explanation
Indices: 50298119--50298171 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
50298109 TAAAATAATT
50298119 TTCAAAAATTTA-AAATAAATTTAAAA
1 TTCAAAAATTTATAAA-AAATTTAAAA
50298145 TTCAAAATATTTATAAAAAATTTAAAA
1 TTCAAAA-ATTTATAAAAAATTTAAAA
50298172 ATTTATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 7 0.28
27 15 0.60
28 3 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (26 bp):
TTCAAAAATTTATAAAAAATTTAAAA
Found at i:50298175 original size:19 final size:20
Alignment explanation
Indices: 50298141--50298178 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50298131 AAATAAATTT
50298141 AAAATTCAAAATATTTATAA
1 AAAATTCAAAATATTTATAA
*
50298161 AAAATTTAAAA-ATTTATA
1 AAAATTCAAAATATTTATA
50298179 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATTCAAAATATTTATAA
Found at i:50298186 original size:25 final size:27
Alignment explanation
Indices: 50298151--50298205 Score: 87
Period size: 25 Copynumber: 2.1 Consensus size: 27
50298141 AAAATTCAAA
50298151 ATATTTATAAAAAATT-TAAAAATT-T
1 ATATTTATAAAAAATTCTAAAAATTAT
*
50298176 ATATTTTTAAAAAATTCTAAAAATTAT
1 ATATTTATAAAAAATTCTAAAAATTAT
50298203 ATA
1 ATA
50298206 AAAAGTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 15 0.56
26 8 0.30
27 4 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (27 bp):
ATATTTATAAAAAATTCTAAAAATTAT
Found at i:50298227 original size:45 final size:45
Alignment explanation
Indices: 50298141--50298228 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
50298131 AAATAAATTT
* *
50298141 AAAATTCAAAATATTTATAAAAAATTTAAAAATTTATATTTTTAA
1 AAAATTCAAAATATTTATAAAAAAGTTAAAAATTTAAATTTTTAA
50298186 AAAATTCTAAAA-A-TTATATAAAAAGTT-AAAATTTAAAATTTTT
1 AAAATTC-AAAATATTTATA-AAAAAGTTAAAAATTT-AAATTTTT
50298229 TCTAAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 12 0.32
45 22 0.58
46 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (45 bp):
AAAATTCAAAATATTTATAAAAAAGTTAAAAATTTAAATTTTTAA
Found at i:50300281 original size:21 final size:21
Alignment explanation
Indices: 50300238--50300284 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
50300228 AATTGGTGTC
* **
50300238 AAGA-TTGACAAGATTTGCGA
1 AAGATTTGACAAGATCTGAAA
50300258 AAGATTTGACAAGATCTGAAA
1 AAGATTTGACAAGATCTGAAA
50300279 AAGATT
1 AAGATT
50300285 GATTAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.45, C:0.09, G:0.21, T:0.26
Consensus pattern (21 bp):
AAGATTTGACAAGATCTGAAA
Found at i:50305466 original size:12 final size:12
Alignment explanation
Indices: 50305449--50305473 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50305439 TAAGCCTCTC
50305449 ATTTGTGTTTTA
1 ATTTGTGTTTTA
50305461 ATTTGTGTTTTA
1 ATTTGTGTTTTA
50305473 A
1 A
50305474 CTCCCTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.00, G:0.16, T:0.64
Consensus pattern (12 bp):
ATTTGTGTTTTA
Found at i:50315158 original size:41 final size:41
Alignment explanation
Indices: 50315113--50315196 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
50315103 TTCAAGAAAG
50315113 ACTTAAAGATTCCAATCCTATTAGGGCTACCGTTTTTAGCT
1 ACTTAAAGATTCCAATCCTATTAGGGCTACCGTTTTTAGCT
50315154 ACTTAAAGATTCCAATCCTATTAGGGCTACCGTTTTTAGCT
1 ACTTAAAGATTCCAATCCTATTAGGGCTACCGTTTTTAGCT
50315195 AC
1 AC
50315197 CTCTCGAGCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (41 bp):
ACTTAAAGATTCCAATCCTATTAGGGCTACCGTTTTTAGCT
Found at i:50316513 original size:43 final size:43
Alignment explanation
Indices: 50316466--50316586 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 43
50316456 CCTCGATTGA
* *
50316466 GATTTACGTGTAAGACCATGTCCGGGACATCGGCATCG-TATCT
1 GATTTACATGTAAGACCATGTCTGGGACATCGGCATCGATAT-T
* **
50316509 GATTT-CATGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 GATTTACATGTAAGACCATGTCTGGGACATCGGCATCGATATT
* * *
50316551 GAATTACATGTAAGACCACGTCTGGGACGTCGGCAT
1 GATTTACATGTAAGACCATGTCTGGGACATCGGCAT
50316587 TGTACTTGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTCTGGGACATCGGCATCGATATT
Found at i:50316535 original size:42 final size:43
Alignment explanation
Indices: 50316469--50316586 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 43
50316459 CGATTGAGAT
* * *
50316469 TTACGTGTAAGACCATGTCCGGGACATCGGCATCG-TATCTG-A
1 TTACATGTAAGACCCTGTCTGGGACATCGGCATCGATAT-TGAA
* **
50316511 TTTCATGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAA
1 TTACATGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAA
*
50316554 TTACATGTAAGACCAC-GTCTGGGACGTCGGCAT
1 TTACATGTAAGACC-CTGTCTGGGACATCGGCAT
50316587 TGTACTTGTT
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 31 0.49
43 31 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAA
Found at i:50320266 original size:184 final size:185
Alignment explanation
Indices: 50319967--50320312 Score: 604
Period size: 184 Copynumber: 1.9 Consensus size: 185
50319957 ATAATATGTG
*
50319967 ATATGTGATATGTGAGCATGTTTACATGGAAATGTGTAAAATTGAGAAATATGCATTAAGTGAGA
1 ATATGTGATATGTGAGCATGTTTACATGAAAATGTGTAAAATTGAGAAATATGCATTAAGTGAGA
* *
50320032 CTATGAGCATGATTACATGTGAAAAATGATTAAATGTGTTAAATTTGAAAATGGCCATATCACAT
66 CTATGAGCATGACTACATGTGAAAAATGATTAAATGTGTTAAATTTGAAAATGGCCATATCACAC
*
50320097 G-ATGGAGTGGGTCTGGTGAAAGGTGGAAGTTCTAAAGTGAATAAAAAGTGAATA
131 GCATGGAGTGGGTCTGGTGAAAGGTAGAAGTTCTAAAGTGAATAAAAAGTGAATA
* **
50320151 ATATGTGATATGTGAGTATGTTTACATGAAAATGTGTAAAATTGAGAAATATGTGTTAAGTGAGA
1 ATATGTGATATGTGAGCATGTTTACATGAAAATGTGTAAAATTGAGAAATATGCATTAAGTGAGA
*
50320216 CTATGAGCATGACTACATGTGAAAAATGATTAAATGTGTTAAATTTGAAAATGGTCATATCACAC
66 CTATGAGCATGACTACATGTGAAAAATGATTAAATGTGTTAAATTTGAAAATGGCCATATCACAC
*
50320281 GCATGGAGTGGGTCTTGTGAAAGGTAGAAGTT
131 GCATGGAGTGGGTCTGGTGAAAGGTAGAAGTT
50320313 ATCTGGCAGT
Statistics
Matches: 152, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
184 124 0.82
185 28 0.18
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (185 bp):
ATATGTGATATGTGAGCATGTTTACATGAAAATGTGTAAAATTGAGAAATATGCATTAAGTGAGA
CTATGAGCATGACTACATGTGAAAAATGATTAAATGTGTTAAATTTGAAAATGGCCATATCACAC
GCATGGAGTGGGTCTGGTGAAAGGTAGAAGTTCTAAAGTGAATAAAAAGTGAATA
Found at i:50328137 original size:26 final size:26
Alignment explanation
Indices: 50328082--50328137 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
50328072 TTATGATTTT
* *
50328082 TTAATAATAATTTTATTAAATTATAT
1 TTAATAATAATTTTATTAAAATATAG
*
50328108 TTAATAATAATTATT-TTAAAATATGG
1 TTAATAATAATT-TTATTAAAATATAG
50328134 TTAA
1 TTAA
50328138 ATTATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (26 bp):
TTAATAATAATTTTATTAAAATATAG
Found at i:50332814 original size:39 final size:39
Alignment explanation
Indices: 50332760--50332837 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
50332750 TAAGAAAGTA
50332760 AGCATACCCTTCAACTTACGAAAGCTCATGAATTTAGGG
1 AGCATACCCTTCAACTTACGAAAGCTCATGAATTTAGGG
50332799 AGCATACCCTTCAACTTACGAAAGCTCATGAATTTAGGG
1 AGCATACCCTTCAACTTACGAAAGCTCATGAATTTAGGG
50332838 TAAGCTCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (39 bp):
AGCATACCCTTCAACTTACGAAAGCTCATGAATTTAGGG
Found at i:50336024 original size:38 final size:38
Alignment explanation
Indices: 50335981--50336065 Score: 127
Period size: 38 Copynumber: 2.2 Consensus size: 38
50335971 AGCTTAAAGA
50335981 CCCGCAGGCTAT-ATGCTAGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTAGAATTATATCCGGGTTAAAT
* * *
50336019 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
50336057 CCCGCAGGC
1 CCCGCAGGC
50336066 CTAGTGCTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
37 1 0.02
38 42 0.98
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
Found at i:50336073 original size:38 final size:38
Alignment explanation
Indices: 50336001--50336084 Score: 150
Period size: 38 Copynumber: 2.2 Consensus size: 38
50335991 ATATGCTAGA
* *
50336001 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGT
50336039 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGT
50336077 ATTATATC
1 ATTATATC
50336085 TAAGTTTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGT
Found at i:50336113 original size:40 final size:38
Alignment explanation
Indices: 50336001--50336121 Score: 143
Period size: 38 Copynumber: 3.1 Consensus size: 38
50335991 ATATGCTAGA
**
50336001 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATCAAGGTTAAATCCCGCAGGCTTCGTGCTGGT
** * *
50336039 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGT
1 ATTATATCAAGGTTAAATCCCGCAGGCTTCGTGCTGGT
* *
50336077 ATTATATCTAAGTTTAAAGTCCCGTAGGCTTCGTGCTGGT
1 ATTATATC-AAGGTTAAA-TCCCGCAGGCTTCGTGCTGGT
*
50336117 GTTAT
1 ATTAT
50336122 GTTCGGGTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 44 0.61
39 6 0.08
40 22 0.31
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (38 bp):
ATTATATCAAGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:50346171 original size:18 final size:18
Alignment explanation
Indices: 50346150--50346188 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50346140 ATTATATATT
*
50346150 ATTTA-TTATATTTGGTTA
1 ATTTAGTTA-ATTCGGTTA
50346168 ATTTAGTTAATTCGGTTA
1 ATTTAGTTAATTCGGTTA
50346186 ATT
1 ATT
50346189 GGTCAATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.56
Consensus pattern (18 bp):
ATTTAGTTAATTCGGTTA
Found at i:50347644 original size:18 final size:17
Alignment explanation
Indices: 50347618--50347651 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50347608 CAAAACTTTT
50347618 GGAGAAAGAAAAATGAG
1 GGAGAAAGAAAAATGAG
*
50347635 GGAGACAAGAAGAATGA
1 GGAGA-AAGAAAAATGA
50347652 TAGAAGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.03, G:0.35, T:0.06
Consensus pattern (17 bp):
GGAGAAAGAAAAATGAG
Found at i:50348610 original size:90 final size:90
Alignment explanation
Indices: 50348454--50348704 Score: 307
Period size: 90 Copynumber: 2.8 Consensus size: 90
50348444 CTAAGTTTAA
* * * *
50348454 AAATTCGGTGAA-TGCATCAAGTTTGCCTCACTAGGACCACCCAAAGC-CTGGGATATGAA-TTC
1 AAATTTGGTGAAGT-CATCAAGTTTGTCTCAATAGGACCACCCAAA-CTCTGGGCTATGAACTT-
* *
50348516 ATTAAGAACATTTAGTGGCTT-ATCCTAT
63 ATTAAGAACATCTAGTAG-TTCATCCTAT
50348544 AAATTTGGT-AAGTTCATCAAGTTTGTCTCAATAGGACCACCCAAACTCTGGGCTATGAACTTAT
1 AAATTTGGTGAAG-TCATCAAGTTTGTCTCAATAGGACCACCCAAACTCTGGGCTATGAACTTAT
*
50348608 TAAAAACATCTAGTAGTTCATCCTAT
65 TAAGAACATCTAGTAGTTCATCCTAT
* * * * *
50348634 AAATTTGGTGAAGTCATCAAGTCTGTCTTAGTAGGACCATCCAAA-TCTGGGCTATGAACTCATT
1 AAATTTGGTGAAGTCATCAAGTTTGTCTCAATAGGACCACCCAAACTCTGGGCTATGAACTTATT
50348698 AAGAACA
66 AAGAACA
50348705 CGGAGCTCAT
Statistics
Matches: 142, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
89 29 0.20
90 107 0.75
91 6 0.04
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (90 bp):
AAATTTGGTGAAGTCATCAAGTTTGTCTCAATAGGACCACCCAAACTCTGGGCTATGAACTTATT
AAGAACATCTAGTAGTTCATCCTAT
Found at i:50351878 original size:26 final size:26
Alignment explanation
Indices: 50351849--50351899 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
50351839 AAATCAAATA
50351849 GTTTAAAATAAATAATATATAAAAGG
1 GTTTAAAATAAATAATATATAAAAGG
* *
50351875 GTTTAAGATAAATAATATGTAAAAG
1 GTTTAAAATAAATAATATATAAAAG
50351900 AGATATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (26 bp):
GTTTAAAATAAATAATATATAAAAGG
Found at i:50351915 original size:29 final size:25
Alignment explanation
Indices: 50351854--50351924 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 25
50351844 AAATAGTTTA
*
50351854 AAATAAATAATATATAAAAGGGTTT
1 AAATAAATAATATATAAAAGGATTT
*
50351879 AAGATAAATAATATGTAAAAGAGATATTT
1 AA-ATAAATAATATATAAAAG-G--ATTT
*
50351908 GAAATAAATAATGTATA
1 -AAATAAATAATATATA
50351925 CATATGTAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
25 2 0.05
26 17 0.46
27 1 0.03
29 15 0.41
30 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (25 bp):
AAATAAATAATATATAAAAGGATTT
Found at i:50353521 original size:23 final size:23
Alignment explanation
Indices: 50353478--50353521 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
50353468 TTTTACTGCC
*
50353478 TTTGCTACTATTTTGTCTTGCTT
1 TTTGCTACTATTTCGTCTTGCTT
*
50353501 TTTG-TACTATTTGCGTGTTGC
1 TTTGCTACTATTT-CGTCTTGC
50353522 CTTGTCACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.09, C:0.16, G:0.18, T:0.57
Consensus pattern (23 bp):
TTTGCTACTATTTCGTCTTGCTT
Found at i:50355301 original size:13 final size:13
Alignment explanation
Indices: 50355283--50355311 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
50355273 TTATTTGACC
50355283 ATACTTCTATTTT
1 ATACTTCTATTTT
50355296 ATACTTCTATTTT
1 ATACTTCTATTTT
50355309 ATA
1 ATA
50355312 AAGAAGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59
Consensus pattern (13 bp):
ATACTTCTATTTT
Found at i:50357373 original size:9 final size:9
Alignment explanation
Indices: 50357359--50357402 Score: 52
Period size: 9 Copynumber: 4.4 Consensus size: 9
50357349 TTAGACTTAA
50357359 ATAATTTTT
1 ATAATTTTT
50357368 ATAATTTTT
1 ATAATTTTT
50357377 ATTATATATTTT
1 A-TA-AT-TTTT
50357389 ATAATTTATT
1 ATAATTT-TT
50357399 ATAA
1 ATAA
50357403 GTAGAGATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 12 0.39
10 10 0.32
11 4 0.13
12 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:50364836 original size:27 final size:27
Alignment explanation
Indices: 50364805--50364858 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
50364795 GTTGAAAGGA
*
50364805 TGCACAGTAACTCTGCTATGAAACAAT
1 TGCACAGTAACCCTGCTATGAAACAAT
*
50364832 TGCACAGTAACCCTGTTATGAAACAAT
1 TGCACAGTAACCCTGCTATGAAACAAT
50364859 GGCATACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (27 bp):
TGCACAGTAACCCTGCTATGAAACAAT
Found at i:50366314 original size:13 final size:13
Alignment explanation
Indices: 50366296--50366320 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50366286 TCACTACTAT
50366296 TACTATTATTATA
1 TACTATTATTATA
50366309 TACTATTATTAT
1 TACTATTATTAT
50366321 CATTTTTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TACTATTATTATA
Found at i:50366757 original size:20 final size:20
Alignment explanation
Indices: 50366723--50366760 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
50366713 TTTTTTAAAT
**
50366723 TATTTTAAAGGAAAGTTTAA
1 TATTTTAAAACAAAGTTTAA
50366743 TATTTTAAAACAAAGTTT
1 TATTTTAAAACAAAGTTT
50366761 TGATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.42
Consensus pattern (20 bp):
TATTTTAAAACAAAGTTTAA
Found at i:50366820 original size:52 final size:49
Alignment explanation
Indices: 50366701--50366825 Score: 126
Period size: 52 Copynumber: 2.4 Consensus size: 49
50366691 TTGAAAAAAT
* * *
50366701 AAAAAATATGTTTTTTTTAAATTATTTTAAAGGAAAGTTTAATATTTTA
1 AAAAAATATGTTTTTTTTAAACTATTTCAAAGAAAAGTTTAATATTTTA
* * *
50366750 AAACAAAGTTTTGATTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATA-TTTA
1 AAA-AAA--TATGTTTTTTTTAAACTATTTCAAAG-AAAAG-TTTAATATTTTA
50366803 AGAAAAATAGTGTTTTTTTTAAA
1 A-AAAAATA-TGTTTTTTTTAAA
50366826 AGAGAAAGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
49 3 0.05
50 3 0.05
51 1 0.02
52 32 0.53
53 12 0.20
54 9 0.15
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.46
Consensus pattern (49 bp):
AAAAAATATGTTTTTTTTAAACTATTTCAAAGAAAAGTTTAATATTTTA
Found at i:50367089 original size:31 final size:30
Alignment explanation
Indices: 50367040--50367100 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
50367030 TTAAAGGAAA
50367040 GTTTAAATTTTTAAAATAAAGTTTTGATTT
1 GTTTAAATTTTTAAAATAAAGTTTTGATTT
* * *
50367070 GTTTAAGTATTTTGAAATAAGGTTTTGATTT
1 GTTTAAAT-TTTTAAAATAAAGTTTTGATTT
50367101 TTACGAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (30 bp):
GTTTAAATTTTTAAAATAAAGTTTTGATTT
Found at i:50367148 original size:22 final size:21
Alignment explanation
Indices: 50367114--50367156 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
50367104 CGAAAAGTAA
* *
50367114 TGATTTTTTAAAATAAAATTT
1 TGATTTTTAAAAAAAAAATTT
50367135 TGATTTTGTAAAAAAAAAATTT
1 TGATTTT-TAAAAAAAAAATTT
50367157 AGCCACCGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (21 bp):
TGATTTTTAAAAAAAAAATTT
Found at i:50367252 original size:6 final size:6
Alignment explanation
Indices: 50367241--50367266 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
50367231 CATAGAAGTT
50367241 GGAAGA GGAAGA GGAAGA GGAAGA GG
1 GGAAGA GGAAGA GGAAGA GGAAGA GG
50367267 TTTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (6 bp):
GGAAGA
Found at i:50369329 original size:42 final size:41
Alignment explanation
Indices: 50369267--50369380 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 41
50369257 TTCGTTTTCT
** * *
50369267 TGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
50369309 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
50369350 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 T-GATGCCATAGCCCAGCTATGGTCTTACAC
50369381 GAATCACATA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.03
42 64 0.97
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (41 bp):
TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:50369452 original size:47 final size:46
Alignment explanation
Indices: 50369351--50369474 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
50369341 ATTCATATAT
* * * * *
50369351 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * *
50369397 TGATGCCATATCCTAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
50369444 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
50369475 GAAATCACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:50369534 original size:31 final size:31
Alignment explanation
Indices: 50369499--50369647 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
50369489 CTTGTCACTT
*
50369499 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
50369530 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
50369561 GTAGCCGGAGCTACCACTTTTCACTGATCAC
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
50369592 GTAGCAGAAACTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
50369623 GTAGCTGAAGCTACCACTTCTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
50369648 TGTCATTTGT
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:50369733 original size:50 final size:51
Alignment explanation
Indices: 50369623--50369751 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
50369613 CACTAATCAG
* * *
50369623 GTAGCTGAAGCTACCACTTCTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
* * *
50369674 GTAGTCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAAATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTGTCA-TTTGTCATTGATCAAATAAGT
50369724 GTAGCCGAAGCTACCACTTATCACTTGT
1 GTAGCCGAAGCTACCACTTATCACTTGT
50369752 TGCCATGGTC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
50 42 0.62
51 26 0.38
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTACCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
Found at i:50371949 original size:42 final size:41
Alignment explanation
Indices: 50371894--50372215 Score: 358
Period size: 42 Copynumber: 7.7 Consensus size: 41
50371884 TCGATTTGAT
* * * *
50371894 ATTTACGTGTAAGACCATGTATGAGACATCTACATCGTATCTA
1 ATTT-CGTGTAAGACCATGTCTGGGACAT-TGCATCGTATCTG
*
50371937 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCATATCTG
1 ATTTCGTGTAAGACCATGTCTGGGACATT-GCATCGTATCTG
* * *
50371979 ATTACGTGTAAGACCATGTCTGGGATAGTGGCATCGTATCTG
1 ATTTCGTGTAAGACCATGTCTGGGACA-TTGCATCGTATCTG
*
50372021 ATTTCGTGTAAGACCATGTATGGGACATTGGCATCGTATCTG
1 ATTTCGTGTAAGACCATGTCTGGGACATT-GCATCGTATCTG
* * * * * *
50372063 ACTACATGTAAGACCATTTCTGGGACATCGACATCGTATCCG
1 ATTTCGTGTAAGACCATGTCTGGGACATTG-CATCGTATCTG
* * *
50372105 ATTTCGTGTAAGACCATGTCTGAGACATCGGCATCGTATCTA
1 ATTTCGTGTAAGACCATGTCTGGGACAT-TGCATCGTATCTG
* * *
50372147 ATTTCGTGTAAAACCATGTTTGGGACATTAGCATCGTATTTG
1 ATTTCGTGTAAGACCATGTCTGGGACATT-GCATCGTATCTG
*
50372189 ATTTCGTGTAAGATCC-TGTTTGGGACA
1 ATTTCGTGTAAGA-CCATGTCTGGGACA
50372216 GAGACATTGA
Statistics
Matches: 237, Mismatches: 35, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.01
42 226 0.95
43 8 0.03
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (41 bp):
ATTTCGTGTAAGACCATGTCTGGGACATTGCATCGTATCTG
Found at i:50372014 original size:84 final size:83
Alignment explanation
Indices: 50371896--50372257 Score: 377
Period size: 84 Copynumber: 4.3 Consensus size: 83
50371886 GATTTGATAT
* * * ** *
50371896 TTACGTGTAAGACCATGTATGAGACATCTACATCGTATCTAATTTCGTGTAAGACCATGTCTGGG
1 TTACATGTAAGACCATGTCTGGGACAT-GGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGG
50371961 ACATTGGCATCATATCTGA
65 ACATTGGCATCATATCTGA
* * *
50371980 TTACGTGTAAGACCATGTCTGGGATAGTGGCATCGTATCTGATTTCGTGTAAGACCATGTATGGG
1 TTACATGTAAGACCATGTCTGGGACA-TGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGG
*
50372045 ACATTGGCATCGTATCTGA
65 ACATTGGCATCATATCTGA
* * * * *
50372064 CTACATGTAAGACCATTTCTGGGACATCGACATCGTATCCGATTTCGTGTAAGACCATGTCTGAG
1 TTACATGTAAGACCATGTCTGGGACAT-GGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGG
* * *
50372129 ACATCGGCATCGTATCTAA
65 ACATTGGCATCATATCTGA
* * * * * * *
50372148 TTTCGTGTAAAACCATGTTTGGGACATTAGCATCGTATTTGATTTCGTGTAAGATCC-TGTTTGG
1 TTACATGTAAGACCATGTCTGGGACA-TGGCATCGTATCTGATTTCGTGTAAGA-CCATGTCTGG
** * *
50372212 GACAGAGACATTGATA-CTGAA
64 GACATTGGCA-TCATATCTG-A
*
50372233 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
50372258 GTCGGCATTA
Statistics
Matches: 231, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
83 1 0.00
84 202 0.87
85 28 0.12
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (83 bp):
TTACATGTAAGACCATGTCTGGGACATGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGA
CATTGGCATCATATCTGA
Found at i:50372038 original size:126 final size:125
Alignment explanation
Indices: 50371894--50372265 Score: 426
Period size: 126 Copynumber: 2.9 Consensus size: 125
50371884 TCGATTTGAT
* *
50371894 ATTTACGTGTAAGACCATGTATGAGACATCTACATCGTATCTAATTTCGTGTAAGACCATGTCTG
1 ATTT-CGTGTAAGACCATGTATGGGACAT-TACATCGTATCTGATTTCGTGTAAGACCATGTCTG
* * * *
50371959 GGACATTGGCATCATATCTGATTACGTGTAAGACCATGTCTGGGATAGT-GGCATCGTATCTG
64 GGACATAGACATCATATCTGATTACGTGTAAGACCATGTCTGGGACA-TCGGCATCGTATCTA
* * * * *
50372021 ATTTCGTGTAAGACCATGTATGGGACATTGGCATCGTATCTGACTACATGTAAGACCATTTCTGG
1 ATTTCGTGTAAGACCATGTATGGGACATT-ACATCGTATCTGATTTCGTGTAAGACCATGTCTGG
* * * * *
50372086 GACATCGACATCGTATCCGATTTCGTGTAAGACCATGTCTGAGACATCGGCATCGTATCTA
65 GACATAGACATCATATCTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTA
* * * *
50372147 ATTTCGTGTAAAACCATGTTTGGGACATTAGCATCGTATTTGATTTCGTGTAAGATCC-TGTTTG
1 ATTTCGTGTAAGACCATGTATGGGACATTA-CATCGTATCTGATTTCGTGTAAGA-CCATGTCTG
* * * * *
50372211 GGACAGAGACATTGATA-CTGAATTACATGTAAGACCACGTCTGGGACGTCGGCAT
64 GGACATAGACA-TCATATCTG-ATTACGTGTAAGACCATGTCTGGGACATCGGCAT
50372266 TATACCCGTT
Statistics
Matches: 205, Mismatches: 34, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
125 2 0.01
126 165 0.80
127 38 0.19
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (125 bp):
ATTTCGTGTAAGACCATGTATGGGACATTACATCGTATCTGATTTCGTGTAAGACCATGTCTGGG
ACATAGACATCATATCTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTA
Found at i:50385016 original size:15 final size:16
Alignment explanation
Indices: 50384984--50385016 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
50384974 TCAAGATGGA
*
50384984 ATTTTGAATTCATCTG
1 ATTTTGAATTCATATG
50385000 ATTTTGAA-TCATATG
1 ATTTTGAATTCATATG
50385015 AT
1 AT
50385017 ACTTTTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.48
Consensus pattern (16 bp):
ATTTTGAATTCATATG
Found at i:50388137 original size:26 final size:26
Alignment explanation
Indices: 50388099--50388184 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
50388089 TGATGTTCAC
50388099 ATACCCCCAGATTGTAAAATTATCGAA
1 ATACCCCC-GATTGTAAAATTATCGAA
*
50388126 ATACCCCCGATTTGTAAAATTATTGAA
1 ATACCCCCGA-TTGTAAAATTATCGAA
** * *
50388153 ATACCCTTGTAGTGTAAAATTACCGAA
1 ATACCCCCG-ATTGTAAAATTATCGAA
50388180 ATACC
1 ATACC
50388185 TCTGTAGGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
26 2 0.04
27 48 0.94
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (26 bp):
ATACCCCCGATTGTAAAATTATCGAA
Found at i:50388190 original size:27 final size:26
Alignment explanation
Indices: 50388111--50388199 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
50388101 ACCCCCAGAT
* *
50388111 TGTAAAATTATCGAAATACCCCCG-ATT
1 TGTAAAATTATCGAAATA-CCCTGTA-G
*
50388138 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCC-TGTAG
*
50388165 TGTAAAATTACCGAAATACCTCTGTAG
1 TGTAAAATTATCGAAATACC-CTGTAG
*
50388192 GGTAAAAT
1 TGTAAAAT
50388200 GATAGTTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 3 0.06
27 48 0.91
28 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (26 bp):
TGTAAAATTATCGAAATACCCTGTAG
Found at i:50388460 original size:9 final size:9
Alignment explanation
Indices: 50388446--50388472 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
50388436 AATCTGTTAA
50388446 GGTCGCACG
1 GGTCGCACG
50388455 GGTCGCACG
1 GGTCGCACG
50388464 GGTCGCACG
1 GGTCGCACG
50388473 AGACGACTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.33, G:0.44, T:0.11
Consensus pattern (9 bp):
GGTCGCACG
Found at i:50388778 original size:26 final size:25
Alignment explanation
Indices: 50388721--50388778 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
50388711 TGTAAGCAGT
*
50388721 ATATATATATCTGGTAGCTTTGCTGC
1 ATAT-TATATCTGGTAGCTATGCTGC
*
50388747 ATTATTATTTCTGGTAGCTATGCTGC
1 A-TATTATATCTGGTAGCTATGCTGC
50388773 GATATT
1 -ATATT
50388779 GGTGTGCTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (25 bp):
ATATTATATCTGGTAGCTATGCTGC
Found at i:50389975 original size:94 final size:93
Alignment explanation
Indices: 50389854--50390027 Score: 294
Period size: 94 Copynumber: 1.9 Consensus size: 93
50389844 GATAAAAAGG
* * *
50389854 GGATTTGATATATTCCTTATCAAATAAGGAAATAAAATTTAATTATTATTTAAAAGAGTTTTATA
1 GGATATGATATATTCCTTAACAAATAAGGAAATAAAATTTAATTATT-TTTAAAAGAGTTTTAAA
50389919 TAAATAATAATTAAAATTCAAAATCAAAA
65 TAAATAATAATTAAAATTCAAAATCAAAA
* *
50389948 GGATATGATATATTCCTTAACAGATAAGGAAATAGAATTTAATTATTTTTAAAAGAGTTTTAAAT
1 GGATATGATATATTCCTTAACAAATAAGGAAATAAAATTTAATTATTTTTAAAAGAGTTTTAAAT
50390013 AAATAATAATTAAAA
66 AAATAATAATTAAAA
50390028 AATTAATTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
93 32 0.43
94 43 0.57
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (93 bp):
GGATATGATATATTCCTTAACAAATAAGGAAATAAAATTTAATTATTTTTAAAAGAGTTTTAAAT
AAATAATAATTAAAATTCAAAATCAAAA
Found at i:50391569 original size:19 final size:19
Alignment explanation
Indices: 50391547--50391583 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50391537 CAATGATCCC
* *
50391547 TCATCCCTTCATTCCTTAA
1 TCATCCCTACATCCCTTAA
50391566 TCATCCCTACATCCCTTA
1 TCATCCCTACATCCCTTA
50391584 TTCAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.38
Consensus pattern (19 bp):
TCATCCCTACATCCCTTAA
Found at i:50393991 original size:21 final size:19
Alignment explanation
Indices: 50393949--50393999 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 19
50393939 TTTGTTTTTC
*
50393949 TTTCTTTTCTTCCTGCCAA-
1 TTTC-TTTCTTCCTACCAAT
50393968 TTTCTATTCTTCTCTACACAAT
1 TTTCT-TTCTTC-CTAC-CAAT
50393990 TTTCTTTCTT
1 TTTCTTTCTT
50394000 TCACTTAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 10 0.37
20 3 0.11
21 8 0.30
22 5 0.19
ACGTcount: A:0.14, C:0.27, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTCTTTCTTCCTACCAAT
Found at i:50394631 original size:24 final size:23
Alignment explanation
Indices: 50394598--50394650 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
50394588 ATGTATCGGC
*
50394598 AAAAGCCGAAATGCCAAAAAGCT
1 AAAAGTCGAAATGCCAAAAAGCT
*
50394621 GAAAAGTCGAAATGCCGAAAAGCT
1 -AAAAGTCGAAATGCCAAAAAGCT
50394645 AAAAGT
1 AAAAGT
50394651 TTGGCTACGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.11
Consensus pattern (23 bp):
AAAAGTCGAAATGCCAAAAAGCT
Found at i:50394969 original size:28 final size:29
Alignment explanation
Indices: 50394859--50394973 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
50394849 GTGAGCATGA
* *
50394859 ATATGAATGTGA-CTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
50394887 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
50394916 ATAT-ACAGGTGATTTGGGCATAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
50394945 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50394973 A
1 A
50394974 GATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:50394980 original size:57 final size:58
Alignment explanation
Indices: 50394872--50394982 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
50394862 TGAATGTGAC
* * * *
50394872 TGGGCCTAATGGGTCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCATAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* *
50394930 TGGGCATAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCATAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
50394983 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (58 bp):
TGGGCATAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:50399010 original size:45 final size:45
Alignment explanation
Indices: 50398923--50399030 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
50398913 GATGCCGATG
* * * *
50398923 TCCCAGACATGGACTTACACGTAACCAGATATATCAATGCCAACA
1 TCCCAGACGTGGTCTTACACGTAACCAAATATATCAACGCCAACA
* * *
50398968 TCCCAGACGTGGTTTTACACGTATCCAAATATAT-AGACGCCAACG
1 TCCCAGACGTGGTCTTACACGTAACCAAATATATCA-ACGCCAACA
*
50399013 TACCAGACGTGGTCTTAC
1 TCCCAGACGTGGTCTTAC
50399031 TCGAAAACAC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 1 0.02
45 52 0.98
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (45 bp):
TCCCAGACGTGGTCTTACACGTAACCAAATATATCAACGCCAACA
Done.