Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 159 of 325
Found at i:50399336 original size:15 final size:15
Alignment explanation
Indices: 50399312--50399341 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50399302 GTTCTTGATC
50399312 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
50399327 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
50399342 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:50402622 original size:10 final size:10
Alignment explanation
Indices: 50402609--50402647 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
50402599 ATATATGAAT
50402609 ATATCATGGC
1 ATATCATGGC
50402619 ATATCATGTGC
1 ATATCATG-GC
*
50402630 ATATCATTGC
1 ATATCATGGC
50402640 ATATCATG
1 ATATCATG
50402648 TATAAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:50402635 original size:21 final size:21
Alignment explanation
Indices: 50402609--50402648 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50402599 ATATATGAAT
50402609 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
*
50402630 ATATCATTGCATATCATGT
1 ATATCATGGCATATCATGT
50402649 ATAAAACAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:50406363 original size:27 final size:25
Alignment explanation
Indices: 50406326--50406436 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 25
50406316 AGCATGGCTG
*
50406326 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
50406352 CCAGATACAGATAATCGTGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGCAGAGCCA
*
50406379 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGT-GCAGAGCCA
** *
50406406 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGT-GCAGAGCCA
50406433 CCAG
1 CCAG
50406437 GATGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 14 0.19
27 57 0.77
28 3 0.04
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:50406418 original size:53 final size:54
Alignment explanation
Indices: 50406326--50406436 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
50406316 AGCATGGCTG
* *
50406326 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGT-GCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
50406379 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
50406433 CCAG
1 CCAG
50406437 GATGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 20 0.40
54 30 0.60
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50408389 original size:40 final size:40
Alignment explanation
Indices: 50408299--50408518 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
50408289 ACCCAAGTAT
* ** * * *
50408299 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
50408337 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
**
50408377 CTTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50408417 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
50408457 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
*
50408497 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
50408519 CATTCGAATA
Statistics
Matches: 151, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 118 0.78
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:50411198 original size:24 final size:24
Alignment explanation
Indices: 50411171--50411241 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
50411161 CTAGATTTCC
**
50411171 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50411195 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50411219 -CCCTTTATCAACTCCTAAATCCT
1 TCCC-TTATCAACTCCTAAATCCT
50411242 CTCCTGACAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 3 0.07
24 41 0.93
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:50420358 original size:14 final size:14
Alignment explanation
Indices: 50420339--50420369 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
50420329 ACACACAGCC
50420339 GTGTCTCAGCTTAT
1 GTGTCTCAGCTTAT
50420353 GTGTCTCAGCTTAT
1 GTGTCTCAGCTTAT
50420367 GTG
1 GTG
50420370 GCTAACACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (14 bp):
GTGTCTCAGCTTAT
Found at i:50422244 original size:49 final size:49
Alignment explanation
Indices: 50422179--50422301 Score: 144
Period size: 48 Copynumber: 2.5 Consensus size: 49
50422169 TCAATTTGAT
*
50422179 GCCATGTCCCAGACATGGTCTTACACTGACTAT-TA-AAATCGAGGCCGAC
1 GCCATGTCCCAGACAT-GTCTTACACTGACT-TGCATAAATCGAGGCCGAC
* * ** *
50422228 GCCATGTCCCAGACATGTCTTAAACTGGCTTGCATATCTCGAGGCCGAT
1 GCCATGTCCCAGACATGTCTTACACTGACTTGCATAAATCGAGGCCGAC
*
50422277 G-CATGTGCCAGACATGTCTTACACT
1 GCCATGTCCCAGACATGTCTTACACT
50422302 AGCTCTTATC
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
47 1 0.02
48 35 0.55
49 28 0.44
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (49 bp):
GCCATGTCCCAGACATGTCTTACACTGACTTGCATAAATCGAGGCCGAC
Found at i:50426068 original size:30 final size:29
Alignment explanation
Indices: 50426032--50426098 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 29
50426022 ATGATTCATA
50426032 TATATATGTCACATAT-TTC-CAATTCATTTG
1 TATATAT-T-ACATATATTCTC-ATTCATTTG
*
50426062 TATATATTGCATATATTCTCATTCATTTG
1 TATATATTACATATATTCTCATTCATTTG
50426091 TCATATAT
1 T-ATATAT
50426099 CATCACTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
28 5 0.15
29 14 0.42
30 14 0.42
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.49
Consensus pattern (29 bp):
TATATATTACATATATTCTCATTCATTTG
Found at i:50429274 original size:48 final size:48
Alignment explanation
Indices: 50429205--50429636 Score: 657
Period size: 48 Copynumber: 9.0 Consensus size: 48
50429195 AGATAAATAT
* *
50429205 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
50429253 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50429301 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
50429349 ATAAATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
50429397 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
50429445 ATATGTATAAGATATGTATATCTGGTAAAACCGAATGACTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
50429493 ATATATATGAGATATGTATATGTGGTAAAGCTGAATGGATAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
50429541 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
50429589 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
50429637 TGTTGTAACA
Statistics
Matches: 346, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 346 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:50429479 original size:144 final size:144
Alignment explanation
Indices: 50429215--50429636 Score: 763
Period size: 144 Copynumber: 2.9 Consensus size: 144
50429205 ATATATGTGT
50429215 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
*
50429280 AAGCCGAATGACGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
66 AAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
50429345 TGAAATAAATATGA
131 TGAAATAAATATGA
50429359 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
* * * *
50429424 AAGCCGAATGGCGAATGTGAAATATGTATAAGATATGTATATCTGGTAAAACCGAATGACTAATG
66 AAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
50429489 TGAAATATATATGA
131 TGAAATAAATATGA
* *
50429503 GATATGTATATGTGGTAAAGCTGAATGGATAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
*
50429568 AAGCCGAATGGCGAATGTGAAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATG
66 AAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
50429633 TGAA
131 TGAA
50429637 TGTTGTAACA
Statistics
Matches: 265, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 265 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (144 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
AAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATAAATATGA
Found at i:50429731 original size:37 final size:37
Alignment explanation
Indices: 50429681--50429788 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
50429671 GGAAATATAT
*
50429681 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
50429718 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
50429755 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
50429789 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50433292 original size:19 final size:19
Alignment explanation
Indices: 50433258--50433294 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50433248 TTCATCATAA
*
50433258 TAAAACAAAATAATAAAAG
1 TAAAACAAAACAATAAAAG
*
50433277 TAAAACAAAACCATAAAA
1 TAAAACAAAACAATAAAA
50433295 ATAAGTAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.73, C:0.11, G:0.03, T:0.14
Consensus pattern (19 bp):
TAAAACAAAACAATAAAAG
Found at i:50433798 original size:55 final size:56
Alignment explanation
Indices: 50433733--50433847 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
50433723 AGCATGGGTG
* *
50433733 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
50433789 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
50433844 CCAG
1 CCAG
50433848 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:50433810 original size:27 final size:27
Alignment explanation
Indices: 50433758--50433847 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
50433748 GTGACAGAGT
50433758 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
50433787 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
50433814 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
50433842 CACCAG
1 CACCAG
50433848 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:50434000 original size:28 final size:28
Alignment explanation
Indices: 50433953--50434016 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
50433943 AAATTAACCC
*
50433953 TAGGGGTATAAAGGCCATTTTGCATACA
1 TAGGGGTATAAAGGCAATTTTGCATACA
* *
50433981 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGCAATTTTGCATACA
50434009 TAGGGGTA
1 TAGGGGTA
50434017 ATCTAGTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGCAATTTTGCATACA
Found at i:50434795 original size:67 final size:67
Alignment explanation
Indices: 50434687--50434821 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 67
50434677 GGAGAAGACT
*
50434687 TACCACCGATTCCTTAGTGAATGATTCCAATGAGTTTCCCACTCGATCCCAATGTAGATCTAAGC
1 TACCACCGATTCCTTAGTGAATGATTCCAATGAGTTTCCCACTCGATCCCAATGTAGAGCTAAGC
50434752 CC
66 CC
* * * *
50434754 TACCACTGATTCCTTAGTGAATGATTCCAGTGAGTTTCCCACTCGATCCCGATGTAGAGCTAATC
1 TACCACCGATTCCTTAGTGAATGATTCCAATGAGTTTCCCACTCGATCCCAATGTAGAGCTAAGC
50434819 CC
66 CC
50434821 T
1 T
50434822 CAGATGATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (67 bp):
TACCACCGATTCCTTAGTGAATGATTCCAATGAGTTTCCCACTCGATCCCAATGTAGAGCTAAGC
CC
Found at i:50440896 original size:28 final size:28
Alignment explanation
Indices: 50440864--50440991 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
50440854 ATAGTAAGTC
*
50440864 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50440892 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
50440921 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
50440949 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50440978 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50440992 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50440954 original size:57 final size:57
Alignment explanation
Indices: 50440863--50440991 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
50440853 TATAGTAAGT
*
50440863 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
50440920 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
50440977 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50440992 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:50444482 original size:19 final size:19
Alignment explanation
Indices: 50444448--50444484 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50444438 TTCATCATAA
*
50444448 TAAAACAAAATAATAAAAG
1 TAAAACAAAACAATAAAAG
*
50444467 TAAAACAAAACCATAAAA
1 TAAAACAAAACAATAAAA
50444485 ATAAGTAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.73, C:0.11, G:0.03, T:0.14
Consensus pattern (19 bp):
TAAAACAAAACAATAAAAG
Found at i:50444999 original size:27 final size:27
Alignment explanation
Indices: 50444947--50445036 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
50444937 GTGACAGAGT
50444947 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
50444976 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
50445003 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
50445031 CACCAG
1 CACCAG
50445037 GATGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:50456821 original size:44 final size:42
Alignment explanation
Indices: 50456733--50456826 Score: 118
Period size: 44 Copynumber: 2.2 Consensus size: 42
50456723 TCCCAGACAG
*
50456733 GGTCTTACACGAAATCAAAAACGATGCCAACATACCAGAGGT
1 GGTCTTACACGAAATCAAAAACGATGCCAACATACCAAAGGT
** *
50456775 GGTCTTACACGTAAATCATAAGTCGATGCCAACAT-CCTAAATGT
1 GGTCTTACACG-AAATCA-AAAACGATGCCAACATACC-AAAGGT
50456819 GGTCTTAC
1 GGTCTTAC
50456827 GTGATAACTC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
42 11 0.24
43 8 0.18
44 26 0.58
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAAAACGATGCCAACATACCAAAGGT
Found at i:50457938 original size:13 final size:13
Alignment explanation
Indices: 50457922--50457946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50457912 CACACAAACA
50457922 ATTAAATTTTCAT
1 ATTAAATTTTCAT
50457935 ATTAAATTTTCA
1 ATTAAATTTTCA
50457947 CACATACTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTAAATTTTCAT
Found at i:50458900 original size:20 final size:21
Alignment explanation
Indices: 50458865--50458905 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
50458855 TATATTTTGC
*
50458865 AAAAATTTTCTAAGTT-TCGT
1 AAAAATTTCCTAAGTTATCGT
*
50458885 AAAAATTTCCTGAGTTATCGT
1 AAAAATTTCCTAAGTTATCGT
50458906 TTTAGTCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (21 bp):
AAAAATTTCCTAAGTTATCGT
Found at i:50460887 original size:16 final size:16
Alignment explanation
Indices: 50460866--50460909 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
50460856 GGCAAAAGCT
50460866 GAAAAGCCAAAATACC
1 GAAAAGCCAAAATACC
*
50460882 GAAAAGCCAAAATGCC
1 GAAAAGCCAAAATACC
50460898 GAAAAGCCAAAA
1 GAAAAGCCAAAA
50460910 GTTTGGCTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.57, C:0.23, G:0.16, T:0.05
Consensus pattern (16 bp):
GAAAAGCCAAAATACC
Found at i:50461176 original size:29 final size:28
Alignment explanation
Indices: 50461120--50461223 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 28
50461110 GTGAGCATGA
* *
50461120 ATAT-AAGGTGATTTGGGTGTAACTGGCC
1 ATATAAAGGTGAATTGGGTCTAA-TGGCC
*
50461148 ATATAAAGGTGATTTGGGTCTAATAGGCC
1 ATATAAAGGTGAATTGGGTCTAAT-GGCC
* * ** *
50461177 ATGTGAATATGAATTGGGTCTGATGGGCC
1 ATATAAAGGTGAATTGGGTCTAAT-GGCC
*
50461206 ATATAAATGTGAATTGGG
1 ATATAAAGGTGAATTGGG
50461224 CCCGATGGGC
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 5 0.08
29 58 0.92
ACGTcount: A:0.29, C:0.09, G:0.31, T:0.32
Consensus pattern (28 bp):
ATATAAAGGTGAATTGGGTCTAATGGCC
Found at i:50461230 original size:29 final size:29
Alignment explanation
Indices: 50461144--50461243 Score: 110
Period size: 29 Copynumber: 3.4 Consensus size: 29
50461134 GGGTGTAACT
* * * *
50461144 GGCCATATAAAGGTGATTTGGGTCTAATA
1 GGCCATATAAATGTGAATTGGGTCTGATG
* * *
50461173 GGCCATGTGAATATGAATTGGGTCTGATG
1 GGCCATATAAATGTGAATTGGGTCTGATG
* *
50461202 GGCCATATAAATGTGAATTGGGCCCGATG
1 GGCCATATAAATGTGAATTGGGTCTGATG
*
50461231 GGCCATATGAATG
1 GGCCATATAAATG
50461244 AGATGGGTCA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (29 bp):
GGCCATATAAATGTGAATTGGGTCTGATG
Found at i:50467664 original size:25 final size:25
Alignment explanation
Indices: 50467636--50467684 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
50467626 TTTTCTCCTA
*
50467636 AATTTATTTAATTATTTAAT-TTTTC
1 AATTTATTAAATTA-TTAATATTTTC
50467661 AATTTATTAAATTATTAATATTTT
1 AATTTATTAAATTATTAATATTTT
50467685 ATACTAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (25 bp):
AATTTATTAAATTATTAATATTTTC
Found at i:50468966 original size:27 final size:27
Alignment explanation
Indices: 50468934--50469044 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 27
50468924 TACATCACAT
*
50468934 AGGGCAAAACAGTCATCTTACCATATG
1 AGGGCAAAACAGTCATCTTACCATATA
*
50468961 AGGGCAAAACAGTCATCCTACCATATA
1 AGGGCAAAACAGTCATCTTACCATATA
* * *
50468988 AGGGCAAAATAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATCTTACCATATA
* * * *
50469015 AGGGTAAAATAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATCTTACCATATA
50469042 AGG
1 AGG
50469045 CCATGATAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
AGGGCAAAACAGTCATCTTACCATATA
Found at i:50479040 original size:17 final size:18
Alignment explanation
Indices: 50479011--50479044 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
50479001 TGTGGCTTGA
50479011 CTGTGTGGGCCCACATGC
1 CTGTGTGGGCCCACATGC
50479029 CTGTGT-GGCCCACATG
1 CTGTGTGGGCCCACATG
50479045 GCCCAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (18 bp):
CTGTGTGGGCCCACATGC
Found at i:50482482 original size:47 final size:47
Alignment explanation
Indices: 50482428--50482827 Score: 687
Period size: 47 Copynumber: 8.5 Consensus size: 47
50482418 TATTTGAATA
*
50482428 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50482475 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
50482524 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50482571 AATGTGAAAGTGTATATATGTGATAAGGCCT-ATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50482617 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50482664 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50482711 AATG-GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
50482757 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50482804 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
50482828 GAGTCCCGAA
Statistics
Matches: 339, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 92 0.27
47 201 0.59
49 46 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50482653 original size:140 final size:141
Alignment explanation
Indices: 50482428--50482827 Score: 687
Period size: 140 Copynumber: 2.8 Consensus size: 141
50482418 TATTTGAATA
*
50482428 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
50482493 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
50482558 GGCCGATGTGATG
129 GGCCGATGTGATG
50482571 AATGTGAAAGTGTATATATGTGATAAGGCCT-ATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50482635 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
50482700 CCGATGTGATG
131 CCGATGTGATG
50482711 AATG-GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
50482775 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
50482828 GAGTCCCGAA
Statistics
Matches: 247, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
139 26 0.11
140 164 0.66
142 26 0.11
143 31 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:50482776 original size:93 final size:94
Alignment explanation
Indices: 50482428--50482827 Score: 687
Period size: 93 Copynumber: 4.3 Consensus size: 94
50482418 TATTTGAATA
*
50482428 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
50482493 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
50482524 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50482589 TGTGATAAGGCCT-ATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
50482617 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50482682 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
50482711 AATG-GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
50482775 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
50482804 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
50482828 GAGTCCCGAA
Statistics
Matches: 293, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
93 179 0.61
94 56 0.19
96 58 0.20
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50485319 original size:38 final size:38
Alignment explanation
Indices: 50485255--50485327 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
50485245 AATCCGAGTT
*
50485255 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
50485293 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCC
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCC
50485328 AGATTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:50485443 original size:40 final size:40
Alignment explanation
Indices: 50485383--50485543 Score: 225
Period size: 40 Copynumber: 4.0 Consensus size: 40
50485373 AGGTCTCGAC
*
50485383 GATG-ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
50485422 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
50485462 GATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
50485502 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
50485542 GA
1 GA
50485544 CGTGTATTCG
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 4 0.04
40 104 0.96
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:50488324 original size:47 final size:47
Alignment explanation
Indices: 50488270--50488859 Score: 1036
Period size: 47 Copynumber: 12.5 Consensus size: 47
50488260 TATTTGAATA
*
50488270 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488317 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
50488366 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488413 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50488460 AATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488507 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488554 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50488601 AATGTGACAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488648 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488695 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50488742 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
50488789 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50488836 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
50488860 GAGTCCCGAA
Statistics
Matches: 521, Mismatches: 20, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
47 475 0.91
49 46 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50494764 original size:37 final size:37
Alignment explanation
Indices: 50494695--50494957 Score: 222
Period size: 37 Copynumber: 7.0 Consensus size: 37
50494685 CTTATCAATG
* * **
50494695 GATAATGCTCGTTTGAGCGTGCATTCCTTATAATCAGTA
1 GATATTGCTCGTTTGAGC--ACATTCAGTATAATCAGTA
* * * * *
50494734 GATATCGCTCATTTGAGCCCATTCAGTATAATCAATG
1 GATATTGCTCGTTTGAGCACATTCAGTATAATCAGTA
* * *
50494771 GACATTGCTCGTTTGAGTAACTTTCAGTATAATCAGTA
1 GATATTGCTCGTTTGAG-CACATTCAGTATAATCAGTA
* * * ** * *
50494809 GACATTTCTCTTTTGAGCATGTTCAGTATATTCAATA
1 GATATTGCTCGTTTGAGCACATTCAGTATAATCAGTA
* * * *
50494846 GATATTGCTCGTTTGAGCCCATTCAATATAATTAGTG
1 GATATTGCTCGTTTGAGCACATTCAGTATAATCAGTA
* *
50494883 GATATCGCTCGTTTGAGCAACTTTCAGTATAATCAGTA
1 GATATTGCTCGTTTGAGC-ACATTCAGTATAATCAGTA
* * *
50494921 GATATTGCT-TTTATGAGCACGTTCAGTATATTCAGTA
1 GATATTGCTCGTT-TGAGCACATTCAGTATAATCAGTA
50494958 TTCCATTTTT
Statistics
Matches: 177, Mismatches: 44, Indels: 8
0.77 0.19 0.03
Matches are distributed among these distances:
37 105 0.59
38 57 0.32
39 15 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (37 bp):
GATATTGCTCGTTTGAGCACATTCAGTATAATCAGTA
Found at i:50494834 original size:75 final size:75
Alignment explanation
Indices: 50494723--50494929 Score: 209
Period size: 75 Copynumber: 2.8 Consensus size: 75
50494713 GTGCATTCCT
* * *
50494723 TATAATCAGTAGATATCGCTCATTTGAGCCCATTCAGTATAATCAATGGACATTGCTCGTTTGAG
1 TATAATCAGTAGACATCGCTCATTTGAGCACATTCAGTATAATCAATAGACATTGCTCGTTTGAG
50494788 TAACTTTCAG
66 TAACTTTCAG
** * ** * *
50494798 TATAATCAGTAGACATTTCTCTTTTGAGCATGTTCAGTATATTCAATAGATATTGCTCGTTTGAG
1 TATAATCAGTAGACATCGCTCATTTGAGCACATTCAGTATAATCAATAGACATTGCTCGTTTGAG
** * *
50494863 -CCCATTCAA
66 TAACTTTCAG
* * * * * * *
50494872 TATAATTAGTGGATATCGCTCGTTTGAGCAACTTTCAGTATAATCAGTAGATATTGCT
1 TATAATCAGTAGACATCGCTCATTTGAGC-ACATTCAGTATAATCAATAGACATTGCT
50494930 TTTATGAGCA
Statistics
Matches: 107, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
74 28 0.26
75 79 0.74
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (75 bp):
TATAATCAGTAGACATCGCTCATTTGAGCACATTCAGTATAATCAATAGACATTGCTCGTTTGAG
TAACTTTCAG
Found at i:50494894 original size:112 final size:112
Alignment explanation
Indices: 50494723--50494954 Score: 331
Period size: 112 Copynumber: 2.1 Consensus size: 112
50494713 GTGCATTCCT
* * * *
50494723 TATAATCAGTAGATATCGCTCATTTGAGCCCATTCAGTATAATCAATGGACATTGCTCGTTTGAG
1 TATATTCAATAGATATCGCTCATTTGAGCCCATTCAATATAATCAATGGACATCGCTCGTTTGAG
* * *
50494788 TAACTTTCAGTATAATCAGTAGACATTTCTCTTT-TGAGCATGTTCAG
66 CAACTTTCAGTATAATCAGTAGACATTGCT-TTTATGAGCACGTTCAG
* * * * *
50494835 TATATTCAATAGATATTGCTCGTTTGAGCCCATTCAATATAATTAGTGGATATCGCTCGTTTGAG
1 TATATTCAATAGATATCGCTCATTTGAGCCCATTCAATATAATCAATGGACATCGCTCGTTTGAG
*
50494900 CAACTTTCAGTATAATCAGTAGATATTGCTTTTATGAGCACGTTCAG
66 CAACTTTCAGTATAATCAGTAGACATTGCTTTTATGAGCACGTTCAG
50494947 TATATTCA
1 TATATTCA
50494955 GTATTCCATT
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
111 3 0.03
112 103 0.97
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (112 bp):
TATATTCAATAGATATCGCTCATTTGAGCCCATTCAATATAATCAATGGACATCGCTCGTTTGAG
CAACTTTCAGTATAATCAGTAGACATTGCTTTTATGAGCACGTTCAG
Found at i:50497035 original size:18 final size:18
Alignment explanation
Indices: 50497012--50497054 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
50497002 TAAGTTTCTA
*
50497012 AAAATGGAAATAGAAATG
1 AAAATGAAAATAGAAATG
*
50497030 AAAATGAAAATGGAAATG
1 AAAATGAAAATAGAAATG
50497048 AAAATGA
1 AAAATGA
50497055 TGCATTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (18 bp):
AAAATGAAAATAGAAATG
Found at i:50497052 original size:6 final size:6
Alignment explanation
Indices: 50497012--50497054 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
50497002 TAAGTTTCTA
* *
50497012 AAAATG GAAAT- AGAAATG AAAATG AAAATG GAAATG AAAATG A
1 AAAATG AAAATG A-AAATG AAAATG AAAATG AAAATG AAAATG A
50497055 TGCATTTGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
6 30 0.97
7 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:50498279 original size:24 final size:24
Alignment explanation
Indices: 50498251--50498303 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
50498241 TTTCTAGAAG
*
50498251 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
* *
50498275 ATTTAGCATTTATTAGTATAGTTT
1 ATTTAGCATTTATTAGTATAATAT
50498299 ATTTA
1 ATTTA
50498304 ACTTACTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:50507773 original size:13 final size:13
Alignment explanation
Indices: 50507755--50507779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50507745 CAAACTTACG
50507755 AGAAGAAAAAAAA
1 AGAAGAAAAAAAA
50507768 AGAAGAAAAAAA
1 AGAAGAAAAAAA
50507780 TTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAAAA
Found at i:50509092 original size:17 final size:17
Alignment explanation
Indices: 50509070--50509104 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
50509060 ACCTTGTGCT
50509070 TCAGAACTTAGGAAAAG
1 TCAGAACTTAGGAAAAG
50509087 TCAGAACTTAGGAAAAG
1 TCAGAACTTAGGAAAAG
50509104 T
1 T
50509105 TAGTTATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (17 bp):
TCAGAACTTAGGAAAAG
Found at i:50509494 original size:13 final size:13
Alignment explanation
Indices: 50509418--50509494 Score: 84
Period size: 13 Copynumber: 5.9 Consensus size: 13
50509408 AGTTTGGCAA
50509418 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
50509431 TGCTGTAT-AAAAG
1 TGCT-TTTGAAAAG
* *
50509444 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
50509457 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
50509470 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
*
50509483 TACTTTTGAAAA
1 TGCTTTTGAAAA
50509495 ATTTAAGTGT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
12 2 0.04
13 49 0.92
14 2 0.04
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:50509673 original size:8 final size:9
Alignment explanation
Indices: 50509655--50509702 Score: 50
Period size: 8 Copynumber: 5.6 Consensus size: 9
50509645 TATTATAACT
50509655 TATTATTAA
1 TATTATTAA
50509664 TATT-TTAATA
1 TATTATT-A-A
50509674 TATTATTAA
1 TATTATTAA
50509683 TATT-TTAA
1 TATTATTAA
50509691 TA-TA-TAA
1 TATTATTAA
50509698 TATTA
1 TATTA
50509703 ATTTTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
7 6 0.18
8 10 0.29
9 10 0.29
10 6 0.18
11 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATTATTAA
Found at i:50509701 original size:21 final size:19
Alignment explanation
Indices: 50509655--50509713 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
50509645 TATTATAACT
50509655 TATTATTAATATTTTAATA
1 TATTATTAATATTTTAATA
50509674 TATTATTAATATTTTAATA
1 TATTATTAATATTTTAATA
*
50509693 TATAATATTAAT-TTTAAATA
1 TAT--TATTAATATTTTAATA
50509713 T
1 T
50509714 TTCTAAGTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 22 0.59
20 8 0.22
21 7 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTATTAATATTTTAATA
Found at i:50510606 original size:29 final size:30
Alignment explanation
Indices: 50510560--50510623 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
50510550 TAATTTGGTT
50510560 AAAATAGATTTTTAAAATAAGGTTTAATTTG
1 AAAATAGATTTTTAAAATAAGGTTTAA-TTG
* * *
50510591 AAAATA-A-TTTTGAAATTAGTTTTAATTG
1 AAAATAGATTTTTAAAATAAGGTTTAATTG
50510619 AAAAT
1 AAAAT
50510624 TAAGGACCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 8 0.27
29 15 0.50
30 1 0.03
31 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (30 bp):
AAAATAGATTTTTAAAATAAGGTTTAATTG
Found at i:50511934 original size:27 final size:29
Alignment explanation
Indices: 50511884--50511999 Score: 80
Period size: 29 Copynumber: 3.9 Consensus size: 29
50511874 TAAAAGGTAT
50511884 GTGTATATATAATAGATACGTATA-GAAGTTTT-
1 GTGTATATAT-ATA-ATA--TATATG-AGTTTTG
50511916 GT-TATATATATAATATATATGAGTTTTG
1 GTGTATATATATAATATATATGAGTTTTG
* * * *
50511944 GTGTTTTTATATAATATATAT--GTGTGG
1 GTGTATATATATAATATATATGAGTTTTG
* *
50511971 GTTTTATTATATATAATATATATGTGTTT
1 G-TGTA-TATATATAATATATATGAGTTT
50512000 ATAGGTTTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
27 15 0.22
28 5 0.07
29 34 0.49
30 3 0.04
31 10 0.14
32 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.50
Consensus pattern (29 bp):
GTGTATATATATAATATATATGAGTTTTG
Found at i:50511964 original size:29 final size:29
Alignment explanation
Indices: 50511917--50512026 Score: 98
Period size: 29 Copynumber: 3.7 Consensus size: 29
50511907 AGAAGTTTTG
* *
50511917 TTATATATATAATATATATGAGTTTTGGTG
1 TTATTTATATAATATATATG-GTTTTGGTT
* *
50511947 TT-TTTATATAATATATAT-GTGTGGGTT
1 TTATTTATATAATATATATGGTTTTGGTT
50511974 TTATTATATATAATATATATGTGTTTATAGGTT
1 TTATT-TATATAATATATATG-GTTT-T-GGTT
* *
50512007 TTGTATTATCTAATATATAT
1 TTAT-TTATATAATATATAT
50512027 AAATGTATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
27 8 0.12
28 2 0.03
29 29 0.45
30 2 0.03
31 3 0.05
33 20 0.31
34 1 0.02
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.54
Consensus pattern (29 bp):
TTATTTATATAATATATATGGTTTTGGTT
Found at i:50515962 original size:43 final size:42
Alignment explanation
Indices: 50515914--50516068 Score: 202
Period size: 43 Copynumber: 3.6 Consensus size: 42
50515904 TACTGAAATG
50515914 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATT
* * * *
50515956 ATGATTACGTGTAAGACCATGTCTGGAACATTGCCATCGTATT
1 -TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATT
* * *
50515999 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATTGATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATT
* * *
50516042 TGATAACATGTAAGATCATATCTGGGA
1 TGATTACATGTAAGACCATGTCTGGGA
50516069 TATGACATTG
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 32 0.33
43 64 0.67
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATT
Found at i:50526227 original size:46 final size:47
Alignment explanation
Indices: 50526117--50526238 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
50526107 TGTCTTCGAC
** * *
50526117 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
50526167 ATGGGCTTATATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
50526213 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
50526239 CTGTCCTATC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.53
50 29 0.47
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:50528150 original size:21 final size:21
Alignment explanation
Indices: 50528126--50528165 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
50528116 AGGAACAAAG
50528126 CAGAGAAGAAAGAGTAAAGTT
1 CAGAGAAGAAAGAGTAAAGTT
50528147 CAGAGAAGAAAGAGTAAAG
1 CAGAGAAGAAAGAGTAAAG
50528166 GCAAAGAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.30, T:0.10
Consensus pattern (21 bp):
CAGAGAAGAAAGAGTAAAGTT
Found at i:50530387 original size:30 final size:30
Alignment explanation
Indices: 50530353--50530457 Score: 165
Period size: 30 Copynumber: 3.5 Consensus size: 30
50530343 CTGCTGGTGA
* *
50530353 TGGTGGTGGTGGTGAAAGTTTTTCTCCTAG
1 TGGTGGCGGTGGTGAATGTTTTTCTCCTAG
*
50530383 TGGTGGCGCTGGTGAATGTTTTTCTCCTAG
1 TGGTGGCGGTGGTGAATGTTTTTCTCCTAG
* *
50530413 TGGTGGCGGTGGTGAATGTTTTTCTTCTTG
1 TGGTGGCGGTGGTGAATGTTTTTCTCCTAG
50530443 TGGTGGCGGTGGTGA
1 TGGTGGCGGTGGTGA
50530458 CGTTTTAGGT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.10, C:0.11, G:0.39, T:0.40
Consensus pattern (30 bp):
TGGTGGCGGTGGTGAATGTTTTTCTCCTAG
Found at i:50532694 original size:32 final size:31
Alignment explanation
Indices: 50532653--50532723 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 31
50532643 TGGGTCAGCT
*
50532653 TACAAATT-AATTACAAGAATATGTTGTTTGC
1 TACAAATTAAATTACAA-AATAGGTTGTTTGC
* * *
50532684 TACAATATTAAATTTCGAAATGGGTTGTTTGC
1 TACAA-ATTAAATTACAAAATAGGTTGTTTGC
50532716 TACAAATT
1 TACAAATT
50532724 GGTAGGGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
31 8 0.24
32 20 0.59
33 6 0.18
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (31 bp):
TACAAATTAAATTACAAAATAGGTTGTTTGC
Found at i:50533801 original size:19 final size:20
Alignment explanation
Indices: 50533771--50533808 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
50533761 TTTAAGGGCC
50533771 ACACGCCCATGTGGCTTGGG
1 ACACGCCCATGTGGCTTGGG
*
50533791 ACACG-CCATGTGGGTTGG
1 ACACGCCCATGTGGCTTGG
50533809 CCGTGTGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (20 bp):
ACACGCCCATGTGGCTTGGG
Found at i:50538639 original size:38 final size:37
Alignment explanation
Indices: 50538590--50538709 Score: 132
Period size: 38 Copynumber: 3.1 Consensus size: 37
50538580 TTTAAACTTA
50538590 GATATAATACCAGCATTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCATTA-GCCTGCGGGATTTAACCCG
** *
50538628 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
1 GATATAATACCAGCA-TTAGCCTGCGGGATTTAACCCG
*** *
50538666 GATATAATTTTAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCAT-TAGCCTGCGGG-ATTTAA-CCCG
50538706 GATA
1 GATA
50538710 CACATCAAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
38 55 0.81
39 6 0.09
40 7 0.10
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (37 bp):
GATATAATACCAGCATTAGCCTGCGGGATTTAACCCG
Found at i:50538644 original size:78 final size:78
Alignment explanation
Indices: 50538553--50538709 Score: 194
Period size: 78 Copynumber: 2.0 Consensus size: 78
50538543 AAACCCAAAC
**
50538553 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGATATAATACCAGCAT-TAGGCCTGCGG
1 ATAACACCAGCACGAAGCCTACGGGA-TTT-AACCCAGATATAATACCAGCATATA-GCCTGCGG
50538617 G-ATTTAA-CCCGGAT
63 GTATTTAAGCCCGGAT
* * *** *
50538631 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTTTAGCATATAGCCTGCGGGTC
1 ATAACACCAGCACGAAGCCTACGGGATTTAACCCAGATATAATACCAGCATATAGCCTGCGGGTA
50538696 TTTAAGCCCGGAT
66 TTTAAGCCCGGAT
50538709 A
1 A
50538710 CACATCAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
76 26 0.38
77 10 0.15
78 32 0.47
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (78 bp):
ATAACACCAGCACGAAGCCTACGGGATTTAACCCAGATATAATACCAGCATATAGCCTGCGGGTA
TTTAAGCCCGGAT
Found at i:50550073 original size:13 final size:13
Alignment explanation
Indices: 50550055--50550079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50550045 AGTATTGCAT
50550055 GAAAATTTTTATA
1 GAAAATTTTTATA
50550068 GAAAATTTTTAT
1 GAAAATTTTTAT
50550080 CAATTATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GAAAATTTTTATA
Found at i:50550560 original size:20 final size:22
Alignment explanation
Indices: 50550537--50550577 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
50550527 GCTGTAAACA
*
50550537 GAAAGTTTA-TGATA-AGAAAT
1 GAAAGGTTATTGATAGAGAAAT
50550557 GAAAGGTTATTGATAGAGAAA
1 GAAAGGTTATTGATAGAGAAA
50550578 CCACTTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (22 bp):
GAAAGGTTATTGATAGAGAAAT
Found at i:50551245 original size:32 final size:32
Alignment explanation
Indices: 50551209--50551270 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
50551199 AAAGGGTGAT
* *
50551209 ACTTGAAAAGGTTACGTGCACTTTGTGTGTAC
1 ACTTGAAAAGGTTACGTACACATTGTGTGTAC
50551241 ACTTGAAAAGGTTACGTACACATTGTGTGT
1 ACTTGAAAAGGTTACGTACACATTGTGTGT
50551271 GTAACACCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (32 bp):
ACTTGAAAAGGTTACGTACACATTGTGTGTAC
Found at i:50557900 original size:40 final size:40
Alignment explanation
Indices: 50557817--50558079 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
50557807 TTGAATGCTG
* * * * * *
50557817 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
50557857 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
50557897 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
50557937 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
50557977 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
50558017 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
50558056 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50558080 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:50558099 original size:79 final size:80
Alignment explanation
Indices: 50557856--50558114 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
50557846 AAGTGAATAT
* * * * * * *
50557856 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
50557920 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
50557936 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
50558001 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
50558016 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
50558080 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
50558095 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
50558115 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:50565827 original size:40 final size:40
Alignment explanation
Indices: 50565744--50566006 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
50565734 TTGAATGCTG
* * * * * *
50565744 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
50565784 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
50565824 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
50565864 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
50565904 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
50565944 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
50565983 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50566007 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:50566026 original size:79 final size:80
Alignment explanation
Indices: 50565783--50566041 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
50565773 AAGTGAATAT
* * * * * * *
50565783 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
50565847 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
50565863 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
50565928 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
50565943 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
50566007 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
50566022 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
50566042 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:50575440 original size:20 final size:20
Alignment explanation
Indices: 50575374--50575440 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
50575364 ATTTTAGTAA
*
50575374 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
50575394 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
50575414 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50575434 ACATGAT
1 ACATGAT
50575441 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50575521 original size:23 final size:23
Alignment explanation
Indices: 50575491--50575539 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
50575481 AGGAAGTGCA
50575491 AAAGGGCTTAAGCCCCAGTTATT
1 AAAGGGCTTAAGCCCCAGTTATT
**
50575514 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTAAGCCCCAGTTATT
50575537 AAA
1 AAA
50575540 AGAGGCTAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTAAGCCCCAGTTATT
Found at i:50575789 original size:31 final size:31
Alignment explanation
Indices: 50575754--50575813 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
50575744 CGTTTACAGT
50575754 AAAGGCTTCGGCCCAGTAATATGAAATATAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATAA
**
50575785 AAAGGCTTCGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
50575814 GAAATATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATAA
Found at i:50579878 original size:40 final size:40
Alignment explanation
Indices: 50579777--50579997 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
50579767 TATTCGAATG
* * * *
50579777 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
50579818 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
50579858 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
50579898 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
50579938 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
50579977 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
50579998 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 96 0.63
41 27 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:50586759 original size:20 final size:20
Alignment explanation
Indices: 50586693--50586759 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
50586683 ATTTTAGTAA
*
50586693 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* * *
50586713 ACATGACATTTATGCTATGC
1 ACATGATATGTATGATATGC
50586733 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50586753 ACATGAT
1 ACATGAT
50586760 GTATTCATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50586840 original size:23 final size:23
Alignment explanation
Indices: 50586810--50586882 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
50586800 AGGAAGTGCA
50586810 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50586833 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
50586856 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
50586880 AAA
1 AAA
50586883 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50586899 original size:25 final size:24
Alignment explanation
Indices: 50586809--50586903 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
50586799 GAGGAAGTGC
50586809 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
50586833 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50586856 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50586880 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50586904 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:50587132 original size:31 final size:31
Alignment explanation
Indices: 50587097--50587156 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
50587087 CGTTTACAGT
50587097 AAAGGCTTCGGCCCAGTAATATGAAATATAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATAA
**
50587128 AAAGGCTTCGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
50587157 GAAATATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATAA
Found at i:50589360 original size:27 final size:26
Alignment explanation
Indices: 50589312--50589371 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50589302 GCGAGGCTGC
*
50589312 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50589339 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50589365 CAGATAT
1 CAGATAT
50589372 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50591645 original size:38 final size:38
Alignment explanation
Indices: 50591603--50591677 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
50591593 ATAGACATGC
50591603 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
50591641 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTG
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTG
50591678 CATGAATGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:50591688 original size:26 final size:26
Alignment explanation
Indices: 50591652--50591703 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
50591642 TGTTCGGCCA
50591652 CATGAATGAGTACATAAGTTGATGTG
1 CATGAATGAGTACATAAGTTGATGTG
50591678 CATGAATGAGTACATAAGTTGATGTG
1 CATGAATGAGTACATAAGTTGATGTG
50591704 TATGTTCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (26 bp):
CATGAATGAGTACATAAGTTGATGTG
Found at i:50592405 original size:40 final size:40
Alignment explanation
Indices: 50592311--50592535 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
50592301 TATTCGAATG
* * * * * * *
50592311 ATATCCAGGCTAAGTCCTGAAGGCTTTTGTACTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTA-GCGACT
* * * * * *
50592352 ATAACTGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAG-CGACT
* *
50592392 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGCGACT
*
50592432 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGCGACT
* * *
50592472 ATATCCGGGCTAAGTCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTC-GTGCTAGCGACT
50592512 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
50592536 CTTGTTCAAG
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.01
40 129 0.83
41 25 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGCGACT
Found at i:50592476 original size:80 final size:80
Alignment explanation
Indices: 50592311--50592571 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
50592301 TATTCGAATG
* * * * * * * *
50592311 ATATCCAGGCTAAGTCCTGAAGGCTTTTGTACTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
50592376 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
50592392 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
50592457 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * *
50592472 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
50592537 TT-GTTCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
50592551 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50592572 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.08
80 97 0.63
81 29 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:50592525 original size:120 final size:121
Alignment explanation
Indices: 50592311--50592535 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 121
50592301 TATTCGAATG
* * * * *
50592311 ATATCCAGGCTAAGTCCTGAAGGCTTTTGTACTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTACTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
50592376 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * * *
50592432 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTACTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
50592495 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
50592536 CTTGTTCAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 5 0.06
120 56 0.62
121 29 0.32
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTGTACTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:50595320 original size:131 final size:131
Alignment explanation
Indices: 50595086--50595347 Score: 497
Period size: 131 Copynumber: 2.0 Consensus size: 131
50595076 TTTTGCCAAG
*
50595086 CCTAAGCACCATCAACAACACATGTTAGTGCATCAACTAACAGTTCACTTGAACTGACATAAGGT
1 CCTAAGCACCATCAACAACACATGTTAGTGCATCAACTAACAATTCACTTGAACTGACATAAGGT
50595151 AAGTCATTATACATGAAAAAATTCATTTGAAATCATCATTTTCATGAACATATATATACTTTCAT
66 AAGTCATTATACATGAAAAAATTCATTTGAAATCATCATTTTCATGAACATATATATACTTTCAT
50595216 T
131 T
*
50595217 CCTAAGCACCATCAACAACACATGTTAGTGCATCAACTAACAATTCACTTGAATTGACATAAGGT
1 CCTAAGCACCATCAACAACACATGTTAGTGCATCAACTAACAATTCACTTGAACTGACATAAGGT
*
50595282 AAGTCATTATACATGAACAAATTCATTTGAAATCATCATTTTCATGAACATATATATACTTTCAT
66 AAGTCATTATACATGAAAAAATTCATTTGAAATCATCATTTTCATGAACATATATATACTTTCAT
50595347 T
131 T
50595348 GAACATTTCC
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 128 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (131 bp):
CCTAAGCACCATCAACAACACATGTTAGTGCATCAACTAACAATTCACTTGAACTGACATAAGGT
AAGTCATTATACATGAAAAAATTCATTTGAAATCATCATTTTCATGAACATATATATACTTTCAT
T
Found at i:50597302 original size:27 final size:27
Alignment explanation
Indices: 50597267--50597595 Score: 279
Period size: 27 Copynumber: 12.2 Consensus size: 27
50597257 TTAGTTTACC
*
50597267 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGCA
*
50597294 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGCA
*** * * * * *
50597321 AAATTATTGAAATAACATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGCA
* *
50597348 AAATTACCAAAATACCCTCAATTAGCA
1 AAATTACCAAAATACCCTCGATTTGCA
* * *
50597375 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGCA
* *
50597402 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGCA
*
50597429 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGCA
**
50597456 AAATTACTGAAATACCC-CTGATTTGCA
1 AAATTACCAAAATACCCTC-GATTTGCA
* *
50597483 AAATTATCGAAATACCC-CGATTTGCA
1 AAATTACCAAAATACCCTCGATTTGCA
* * ** * *
50597509 AAATTACTAAAATACCTTTAACTTGTA
1 AAATTACCAAAATACCCTCGATTTGCA
* * * *
50597536 AAATTACGAAAGTACCCCCGATTTTCA
1 AAATTACCAAAATACCCTCGATTTGCA
*** *
50597563 AAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGCA
50597590 AAATTA
1 AAATTA
50597596 TCGAAACAAC
Statistics
Matches: 243, Mismatches: 56, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
26 21 0.09
27 221 0.91
28 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGCA
Found at i:50597626 original size:26 final size:26
Alignment explanation
Indices: 50597590--50597650 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
50597580 TCGATTTACA
*
50597590 AAATTATCGAAACAACCCTATAGGGT
1 AAATTACCGAAACAACCCTATAGGGT
* * *
50597616 AAATTACCGAAATACCCCTGTAGGGT
1 AAATTACCGAAACAACCCTATAGGGT
50597642 AGAATTACC
1 A-AATTACC
50597651 AAGATACCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.23
Consensus pattern (26 bp):
AAATTACCGAAACAACCCTATAGGGT
Found at i:50597657 original size:27 final size:25
Alignment explanation
Indices: 50597605--50597678 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
50597595 ATCGAAACAA
*
50597605 CCCTATAGGGTAAATTACCGAAATAC
1 CCCTGTAGGGTAAATTACC-AAATAC
50597631 CCCTGTAGGGTAGAATTACCAAGATAC
1 CCCTGTAGGGTA-AATTACCAA-ATAC
* *
50597658 CCTTGTGGGGTAAAATTACCA
1 CCCTGTAGGGT-AAATTACCA
50597679 TTTTTCCCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.31
27 28 0.67
28 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
CCCTGTAGGGTAAATTACCAAATAC
Found at i:50598059 original size:22 final size:22
Alignment explanation
Indices: 50598034--50598083 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
50598024 GATGGCTCTG
50598034 TGCCAACCTAAATATGGCTTCA
1 TGCCAACCTAAATATGGCTTCA
* * * * *
50598056 TGCCATCTTGACTATGGCTTCG
1 TGCCAACCTAAATATGGCTTCA
50598078 TGCCAA
1 TGCCAA
50598084 ACGTATTTAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (22 bp):
TGCCAACCTAAATATGGCTTCA
Found at i:50598293 original size:27 final size:26
Alignment explanation
Indices: 50598240--50598316 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
50598230 TATTCTGTTA
* * * *
50598240 AGTGGCTTTGCCACATTATCTAATTCT
1 AGTGGCTATGCCAAAATATCT-GTTCT
50598267 AGTGGCTATGCCAAAAATATCTGTTCT
1 AGTGGCTATGCC-AAAATATCTGTTCT
* *
50598294 GGTGGCTCTGCCAAAATATCTGT
1 AGTGGCTATGCCAAAATATCTGT
50598317 ATCTGGTGAC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
26 11 0.26
27 25 0.58
28 7 0.16
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
AGTGGCTATGCCAAAATATCTGTTCT
Found at i:50598321 original size:27 final size:26
Alignment explanation
Indices: 50598263--50598348 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
50598253 CATTATCTAA
* *
50598263 TTCTAGTGGCTATGCCAAAAATATCTG
1 TTCTGGTGGCTCTGCC-AAAATATCTG
50598290 TTCTGGTGGCTCTGCCAAAATATCTG
1 TTCTGGTGGCTCTGCCAAAATATCTG
* ** *
50598316 TATCTGGTGACTCTATCACAATATCTG
1 T-TCTGGTGGCTCTGCCAAAATATCTG
50598343 TTCTGG
1 TTCTGG
50598349 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 16 0.31
27 36 0.69
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCAAAATATCTG
Found at i:50598497 original size:6 final size:6
Alignment explanation
Indices: 50598466--50598554 Score: 83
Period size: 6 Copynumber: 14.5 Consensus size: 6
50598456 TTGCATTCAC
* *
50598466 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
50598515 ATTCTG ATTC-G GTCACCTG ATTCTG ATTCTG ATTTTG ATT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT
50598555 TTAGTTTTGA
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
5 4 0.06
6 57 0.84
7 4 0.06
8 3 0.04
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:50598517 original size:37 final size:37
Alignment explanation
Indices: 50598466--50598554 Score: 112
Period size: 37 Copynumber: 2.4 Consensus size: 37
50598456 TTGCATTCAC
50598466 ATTCTGATTTTGATTCTG-TTACCTGAT-A-CTGATTCTG
1 ATTCTGATTTTGATTCTGATT--C-GATCACCTGATTCTG
* *
50598503 ATTCTGATTCTGATTCTGATTCGGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGATTCGATCACCTGATTCTG
50598540 ATTCTGATTTTGATT
1 ATTCTGATTTTGATT
50598555 TTAGTTTTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
35 2 0.04
36 2 0.04
37 40 0.87
38 2 0.04
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (37 bp):
ATTCTGATTTTGATTCTGATTCGATCACCTGATTCTG
Found at i:50598533 original size:43 final size:43
Alignment explanation
Indices: 50598466--50598554 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
50598456 TTGCATTCAC
* * *
50598466 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGATTCTGATTCGGTCACCTGATACTGATTCTGATTCTG
* *
50598509 ATTCTGATTCTGATTCGGTCACCTGATTCTGATTCTGATTTTG
1 ATTCTGATTCTGATTCGGTCACCTGATACTGATTCTGATTCTG
50598552 ATT
1 ATT
50598555 TTAGTTTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (43 bp):
ATTCTGATTCTGATTCGGTCACCTGATACTGATTCTGATTCTG
Found at i:50600552 original size:27 final size:27
Alignment explanation
Indices: 50600513--50600843 Score: 301
Period size: 27 Copynumber: 12.3 Consensus size: 27
50600503 TTAGTTTACC
* * *
50600513 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCGAAATACCCTCGATTTGTA
** * * *
50600540 AAATTATTGAAATACCATTGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50600567 AAATTACCAAAATACCCTCGATTAGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
50600594 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50600621 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50600647 AAATTACCAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * * *
50600674 AACTTACTGAAATACCCCCAATTTGGA
1 AAATTACCGAAATACCCTCGATTTGTA
*
50600701 AAATTACCGAAATACCCTCGATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50600728 AAATTACCGAAAT-GCCTCCGATTTGCA
1 AAATTACCGAAATACCCT-CGATTTGTA
** *
50600755 AAATTATTGAAATACCC-CAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
50600781 AAATTACTAAAATACCTTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* **
50600808 AAATTACC-AAAGTACCCCCGATTTACA
1 AAATTACCGAAA-TACCCTCGATTTGTA
50600835 AAATTACCG
1 AAATTACCG
50600844 TTTTACCCTT
Statistics
Matches: 249, Mismatches: 49, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
26 52 0.21
27 195 0.78
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:50600687 original size:80 final size:80
Alignment explanation
Indices: 50600561--50600841 Score: 314
Period size: 80 Copynumber: 3.5 Consensus size: 80
50600551 ATACCATTGG
* ** ***
50600561 TTTGTAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCCTTGGTTTGTAAAATT
1 TTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCC-CAATTTGTAAAATT
*
50600626 ACCAAAATACCCTAG-
65 ACCAAAATACCCTCGA
* * *
50600641 TTTGTAAAATTACCAAAATACCCTTGATTTGTAAACTTACTGAAATACCCCCAATTTGGAAAATT
1 TTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATA-CCCCAATTTGTAAAATT
*
50600706 ACCGAAATACCCTCGA
65 ACCAAAATACCCTCGA
* * * * *
50600722 TTTGCAAAATTACCGAAAT-GCCTCCGATTTGCAAAATTATTGAAATACCCCAATTTGTAAAATT
1 TTTGTAAAATTACCAAAATACCCT-CGATTTGTAAAATTACTGAAATACCCCAATTTGTAAAATT
* *
50600786 ACTAAAATACCTTCGA
65 ACCAAAATACCCTCGA
* * * **
50600802 CTTGTAAAATTACCAAAGTACCCCCGATTTACAAAATTAC
1 TTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTAC
50600842 CGTTTTACCC
Statistics
Matches: 167, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
80 126 0.75
81 41 0.25
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
TTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCCAATTTGTAAAATTA
CCAAAATACCCTCGA
Found at i:50600758 original size:134 final size:134
Alignment explanation
Indices: 50600513--50600873 Score: 359
Period size: 134 Copynumber: 2.7 Consensus size: 134
50600503 TTAGTTTACC
* * * * *** * * *
50600513 AAATTACCAAAATACCCTCGATTAGCAAAATTATTGAAATACCATTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACTGAAATACCCCCGATTTGCAAAATTACCGAA
* * * * * * * *
50600578 ATACCCTCGATTAGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTAGTT
66 ATACCCTCGATTTGCAAAATTACCGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCAATT
50600643 TGTA
131 TGTA
* * *
50600647 AAATTACCAAAATACCCTTGATTTGTAAACTTACTGAAATACCCCCAATTTGGAAAATTACCGAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACTGAAATACCCCCGATTTGCAAAATTACCGAA
* ***
50600712 ATACCCTCGATTTGCAAAATTACCGAAAT-GCCTCCGATTTGCAAAATTATTGAAATACCCCAAT
66 ATACCCTCGATTTGCAAAATTACCGAAATACCCT-CGATTTGCAAAATTACCAAAATACCCCAAT
50600776 TTGTA
130 TTGTA
* * * *
50600781 AAATTACTAAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTTACAAAATTACCG
1 AAATTACCAAAATACCCTT-GATTTGTAAAATTACTGAAA-TACCCCCGATTTGCAAAATTACCG
*** ** *
50600844 TTTTACCCTTAATTTACAAAATTACCGAAA
64 AAATACCCTCGATTTGCAAAATTACCGAAA
50600874 CAACCCTATA
Statistics
Matches: 187, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
133 10 0.05
134 177 0.95
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (134 bp):
AAATTACCAAAATACCCTTGATTTGTAAAATTACTGAAATACCCCCGATTTGCAAAATTACCGAA
ATACCCTCGATTTGCAAAATTACCGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCAATT
TGTA
Found at i:50600893 original size:27 final size:27
Alignment explanation
Indices: 50600863--50601112 Score: 313
Period size: 27 Copynumber: 9.3 Consensus size: 27
50600853 TAATTTACAA
* * *
50600863 AATTACCGAAACAACCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
50600890 AATTACTGAAATACCCCTGTCGAGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50600917 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50600944 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50600971 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50600998 AATTATCGAAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50601025 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50601052 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50601079 AATTACCGAGATA-CCCTCGTGGGGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
50601106 AATTACC
1 AATTACC
50601113 ATTTTGCCCC
Statistics
Matches: 190, Mismatches: 32, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.02
27 186 0.98
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50601493 original size:22 final size:23
Alignment explanation
Indices: 50601460--50601520 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
50601450 CATGTTATTG
50601460 ATGGC-TCTGTGCCAAAC-TAAAT
1 ATGGCTTC-GTGCCAAACTTAAAT
* * *
50601482 ATGGCTTCGTGCC-ATCTTGACT
1 ATGGCTTCGTGCCAAACTTAAAT
50601504 ATGGCTTCGTGCCAAAC
1 ATGGCTTCGTGCCAAAC
50601521 GTATTTACCT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 2 0.06
22 26 0.81
23 4 0.12
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (23 bp):
ATGGCTTCGTGCCAAACTTAAAT
Found at i:50601712 original size:27 final size:26
Alignment explanation
Indices: 50601682--50601782 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 26
50601672 TAAGTGGCTT
*
50601682 TGCCACATTATCTGATTCTGGTGACTA
1 TGCCACAATATCTG-TTCTGGTGACTA
* *
50601709 TGCCACAAATATCTGTTCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTGGTGACTA
* *
50601736 TGCCAAAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTA
**
50601763 TATCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
50601783 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
26 14 0.22
27 43 0.67
28 7 0.11
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTA
Found at i:50601734 original size:54 final size:53
Alignment explanation
Indices: 50601675--50601782 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 53
50601665 ATTCTGTTAA
* * * *
50601675 GTGGCTTTGCCACATTATCTG-ATTCTGGTGACTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAAAATATCTGTA-TCTGGTGACTATACCAC-AATATCTGTTCTG
* *
50601729 GTGGCTCTGCCAAAATATCTGTATCTGGTGACTCTATCACAATATCTGTTCTG
1 GTGGCTCTGCCAAAATATCTGTATCTGGTGACTATACCACAATATCTGTTCTG
50601782 G
1 G
50601783 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 14 0.30
54 32 0.68
55 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCAAAATATCTGTATCTGGTGACTATACCACAATATCTGTTCTG
Found at i:50601885 original size:31 final size:31
Alignment explanation
Indices: 50601844--50601904 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
50601834 ATTCACATTC
* *
50601844 TGATTTTGATTCTGTTACCTAATACTGATTT
1 TGATTCTGATTCTGTCACCTAATACTGATTT
* *
50601875 TGATTCTGATTCTGTCACCTGATTCTGATT
1 TGATTCTGATTCTGTCACCTAATACTGATT
50601905 CTAGTTCTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTAATACTGATTT
Found at i:50606959 original size:55 final size:55
Alignment explanation
Indices: 50606855--50606973 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
50606845 CGTGTGTGAC
* * * * **
50606855 ACTGACTTTAGGGCACGGCCATGACACATGCCCGTGTGGCCTACCCGTGGGCAAT
1 ACTGACTTTAGGACACGGCCATGACACACGCCCGTATGGCCTAACCGTGGAAAAT
* * *
50606910 ACTGACTTATA-GACACGGCTATGGCACACGCCCGTATGGCCTAATCGTGGAAAAT
1 ACTGACTT-TAGGACACGGCCATGACACACGCCCGTATGGCCTAACCGTGGAAAAT
50606965 ACTGA-TTTA
1 ACTGACTTTA
50606974 AAGGTTTAAG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 48 0.89
56 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (55 bp):
ACTGACTTTAGGACACGGCCATGACACACGCCCGTATGGCCTAACCGTGGAAAAT
Found at i:50616396 original size:40 final size:40
Alignment explanation
Indices: 50616341--50616557 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
50616331 GGATGATAAT
* * * *
50616341 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TATC
*
50616381 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
50616421 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
50616461 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
* *
50616501 CGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT-
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATC
* * *
50616540 CTGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
50616558 TACTTGGCTT
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 148 0.90
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
Found at i:50624491 original size:40 final size:40
Alignment explanation
Indices: 50624436--50624573 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 40
50624426 TGGATGATAA
* *
50624436 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTA-TAT
* *
50624476 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTATAT
* *
50624516 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGA-CTATAT
* *
50624556 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50624574 TACTTGGATT
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 15 0.17
40 72 0.83
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTATAT
Found at i:50632105 original size:38 final size:39
Alignment explanation
Indices: 50632029--50632204 Score: 313
Period size: 38 Copynumber: 4.6 Consensus size: 39
50632019 ATGCAAGACA
50632029 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
50632068 CTGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
50632106 CTGGAAATATATCCGGGCCAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
50632144 CTGGAAATGTATCCGGGC-AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
50632182 CTGGAAATGTATCCGGGCTAAAG
1 CTGGAAATGTATCCGGGCTAAAG
50632205 CTGCATATCC
Statistics
Matches: 132, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
37 5 0.04
38 99 0.75
39 28 0.21
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:50632242 original size:58 final size:57
Alignment explanation
Indices: 50632153--50632262 Score: 202
Period size: 58 Copynumber: 1.9 Consensus size: 57
50632143 GCTGGAAATG
*
50632153 TATCCGGGCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGCTGCA
1 TATCCGGGCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGCTGCA
50632210 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAG
1 TATCCGGGC-AAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAG
50632263 TCCCGCAGGC
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
57 9 0.18
58 42 0.82
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.21
Consensus pattern (57 bp):
TATCCGGGCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGCTGCA
Found at i:50632264 original size:39 final size:39
Alignment explanation
Indices: 50632210--50632320 Score: 195
Period size: 39 Copynumber: 2.8 Consensus size: 39
50632200 TAAAGCTGCA
50632210 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
*
50632249 TATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
* *
50632288 TATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
50632321 ATAATATAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
Found at i:50632289 original size:97 final size:95
Alignment explanation
Indices: 50632114--50632301 Score: 340
Period size: 97 Copynumber: 2.0 Consensus size: 95
50632104 TGCTGGAAAT
50632114 ATATCCGGGCCAAAGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCAAAGTCCCGCAGGCTTC
1 ATATCCGGGCCAAAGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCAAAGTCCCGCAGGCTTC
50632179 GTGCTGGAAATGTATCCGGGCTAAAGCTGC
66 GTGCTGGAAATGTATCCGGGCTAAAGCTGC
*
50632209 ATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCT
1 ATATCCGGGCCAAAGT-CCGCAGGCTTCGTGCTGGAAATGTATCCGGG-CAAAGTCCCGCAGGCT
*
50632274 TCGTGCTGGAAATGTATCCGGGTTAAAG
64 TCGTGCTGGAAATGTATCCGGGCTAAAG
50632302 TCCCGCAGGC
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
95 15 0.17
96 31 0.35
97 43 0.48
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (95 bp):
ATATCCGGGCCAAAGTCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCAAAGTCCCGCAGGCTTC
GTGCTGGAAATGTATCCGGGCTAAAGCTGC
Found at i:50637955 original size:39 final size:39
Alignment explanation
Indices: 50637901--50638078 Score: 322
Period size: 39 Copynumber: 4.6 Consensus size: 39
50637891 ATGCAAGACA
50637901 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
50637940 CTGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
50637978 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
50638017 CTGGAAATGTATCCGGGCTAAAGTCCCGCATGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
50638056 CTGGAAATGTATCCGGGCTAAAG
1 CTGGAAATGTATCCGGGCTAAAG
50638079 CCTGTGATAT
Statistics
Matches: 133, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
38 36 0.27
39 97 0.73
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:50638001 original size:77 final size:78
Alignment explanation
Indices: 50637901--50638078 Score: 322
Period size: 77 Copynumber: 2.3 Consensus size: 78
50637891 ATGCAAGACA
50637901 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGT-C
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
50637965 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
* *
50637978 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
*
50638043 CGCATGCTTCGTG
66 CGCAGGCTTCGTG
50638056 CTGGAAATGTATCCGGGCTAAAG
1 CTGGAAATGTATCCGGGCTAAAG
50638079 CCTGTGATAT
Statistics
Matches: 95, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 61 0.64
78 34 0.36
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (78 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
CGCAGGCTTCGTG
Found at i:50638119 original size:60 final size:60
Alignment explanation
Indices: 50638026--50638138 Score: 208
Period size: 60 Copynumber: 1.9 Consensus size: 60
50638016 GCTGGAAATG
* *
50638026 TATCCGGGCTAAAGTCCCGCATGCTTCGTGCTGGAAATGTATCCGGGCTAAAGCCTGTGA
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGCCTGTGA
50638086 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAG
50638139 TCCCACAGGC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (60 bp):
TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGCCTGTGA
Found at i:50638140 original size:39 final size:39
Alignment explanation
Indices: 50638086--50638196 Score: 186
Period size: 39 Copynumber: 2.8 Consensus size: 39
50638076 AAGCCTGTGA
50638086 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
* *
50638125 TATCCGGGCCAAAGTCCCACAGGCTTCGTGCTGGAAATG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
* *
50638164 TATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
50638197 ATAATATAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATG
Found at i:50638157 original size:99 final size:99
Alignment explanation
Indices: 50637986--50638177 Score: 339
Period size: 99 Copynumber: 1.9 Consensus size: 99
50637976 TGCTGGAAAT
* * *
50637986 ATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCATGCT
1 ATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCACAGGCT
50638051 TCGTGCTGGAAATGTATCCGGGCTAAAGCCTGTG
66 TCGTGCTGGAAATGTATCCGGGCTAAAGCCTGTG
*
50638085 ATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCACAGGCT
1 ATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCACAGGCT
*
50638150 TCGTGCTGGAAATGTATCCGGGTTAAAG
66 TCGTGCTGGAAATGTATCCGGGCTAAAG
50638178 TCCCGCAGGC
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 88 1.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (99 bp):
ATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCACAGGCT
TCGTGCTGGAAATGTATCCGGGCTAAAGCCTGTG
Found at i:50647819 original size:50 final size:49
Alignment explanation
Indices: 50647694--50647882 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 49
50647684 TTTTTTCGCA
* * * * *
50647694 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCACG
** * **
50647745 TGTGTAGTACTAAGTGCAAACTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
50647795 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
50647844 TGTGTAGTACAAAGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
50647883 GCTTTGGCTA
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 41 0.36
50 42 0.37
51 31 0.27
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:50651468 original size:22 final size:22
Alignment explanation
Indices: 50651440--50651483 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
50651430 AGGCACCGCA
*
50651440 AACACAAACTATCAAATATACC
1 AACACAAACAATCAAATATACC
50651462 AACACAAACAATCAAATATACC
1 AACACAAACAATCAAATATACC
50651484 TAACTATAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.57, C:0.27, G:0.00, T:0.16
Consensus pattern (22 bp):
AACACAAACAATCAAATATACC
Found at i:50658212 original size:28 final size:28
Alignment explanation
Indices: 50658172--50658227 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
50658162 AATTTTCGGG
50658172 GAAAGAATTTGACTTTGGGGTTGGTATA
1 GAAAGAATTTGACTTTGGGGTTGGTATA
50658200 GAAAGAATTTGACTTTGGGGTTGGTATA
1 GAAAGAATTTGACTTTGGGGTTGGTATA
50658228 CTGATTCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.04, G:0.32, T:0.36
Consensus pattern (28 bp):
GAAAGAATTTGACTTTGGGGTTGGTATA
Found at i:50660378 original size:28 final size:28
Alignment explanation
Indices: 50660338--50660472 Score: 130
Period size: 29 Copynumber: 4.7 Consensus size: 28
50660328 TAAATGTGAT
*
50660338 TTGGGCCAGATGGGCCATATGAACGAG-A
1 TTGGGCCA-ATGGGCCATATGAATGAGAA
*
50660366 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCC-AATGGGCCATATGAATGAGAA
* * *
50660395 TTGGGCCTGATGGGCAATATGAATGTGAA
1 TTGGGCC-AATGGGCCATATGAATGAGAA
* * *
50660424 TTGGGCCGGATGGGTCATATAAATGAG-A
1 TTGGGCC-AATGGGCCATATGAATGAGAA
*
50660452 TTGGGCCAAGTGGGTCATATG
1 TTGGGCCAA-TGGGCCATATG
50660473 CATGTATGTA
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.01
28 41 0.44
29 51 0.55
ACGTcount: A:0.27, C:0.13, G:0.35, T:0.25
Consensus pattern (28 bp):
TTGGGCCAATGGGCCATATGAATGAGAA
Found at i:50660393 original size:57 final size:57
Alignment explanation
Indices: 50660327--50660472 Score: 161
Period size: 57 Copynumber: 2.5 Consensus size: 57
50660317 GTGAGCATGA
*
50660327 ATAAATGTGATTTGGGCCAGATGGGCCATATGAACGAG-ATTGGGCCTAATGGGCCAT
1 ATAAATGTGA-TTGGGCCAGATGGGCCATATGAACGAGAATTGGGCCGAATGGGCCAT
* * * * * * *
50660384 ATGAATGTGAATTGGGCCTGATGGGCAATATGAATGTGAATTGGGCCGGATGGGTCAT
1 ATAAATGTG-ATTGGGCCAGATGGGCCATATGAACGAGAATTGGGCCGAATGGGCCAT
* *
50660442 ATAAATGAGATTGGGCCA-AGTGGGTCATATG
1 ATAAATGTGATTGGGCCAGA-TGGGCCATATG
50660473 CATGTATGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
56 1 0.01
57 48 0.66
58 24 0.33
ACGTcount: A:0.28, C:0.12, G:0.34, T:0.26
Consensus pattern (57 bp):
ATAAATGTGATTGGGCCAGATGGGCCATATGAACGAGAATTGGGCCGAATGGGCCAT
Found at i:50660407 original size:29 final size:29
Alignment explanation
Indices: 50660330--50660458 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
50660320 AGCATGAATA
* *
50660330 AATGTGATTTGGGCCAGATGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
* * *
50660359 AACGAG-ATTGGGCCTAATGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
*
50660387 AATGTGAATTGGGCCTGATGGGCAATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
* * *
50660416 AATGTGAATTGGGCCGGATGGGTCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATG
*
50660445 AATGAG-ATTGGGCC
1 AATGTGAATTGGGCC
50660459 AAGTGGGTCA
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
28 31 0.36
29 54 0.64
ACGTcount: A:0.27, C:0.13, G:0.34, T:0.26
Consensus pattern (29 bp):
AATGTGAATTGGGCCTGATGGGCCATATG
Found at i:50664606 original size:27 final size:27
Alignment explanation
Indices: 50664569--50664758 Score: 197
Period size: 27 Copynumber: 7.0 Consensus size: 27
50664559 GGCCCTGTAA
50664569 GGTAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
50664596 GTTAAAATGACAGTTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
50664623 GGAAAAATAACTTTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
50664650 GTTAAAATGA-TGGTTTTTCCATTATGT
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* *
50664677 GGTAAAATGAC-GATTTTGCCTTTATGA
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* *
50664704 AGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
**
50664731 GGTAGGATGACTGTTTTGTCCC-TATGT
1 GGTAAAATGACTGTTTTG-CCCTTATGT
50664758 G
1 G
50664759 ATGTATGTTT
Statistics
Matches: 131, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 126 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:50670769 original size:9 final size:8
Alignment explanation
Indices: 50670730--50670769 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
50670720 AACTGTAAAG
50670730 GCTGAAAA
1 GCTGAAAA
*
50670738 GCCGAAAA
1 GCTGAAAA
*
50670746 GCTGAAAG
1 GCTGAAAA
50670754 GCTGAAAA
1 GCTGAAAA
50670762 GCTAGAAA
1 GCT-GAAA
50670770 GTGGGTTGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
8 23 0.85
9 4 0.15
ACGTcount: A:0.47, C:0.15, G:0.28, T:0.10
Consensus pattern (8 bp):
GCTGAAAA
Found at i:50670770 original size:24 final size:24
Alignment explanation
Indices: 50670718--50670770 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
50670708 CATTAGACGT
*
50670718 GAAA-CTGTAAAGGCTGAAAAGCC
1 GAAAGCTGTAAAGGCTGAAAAGCA
50670741 GAAAAGCTG-AAAGGCTGAAAAGCTA
1 G-AAAGCTGTAAAGGCTGAAAAGC-A
50670766 GAAAG
1 GAAAG
50670771 TGGGTTGTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 1 0.04
24 21 0.81
25 4 0.15
ACGTcount: A:0.47, C:0.13, G:0.28, T:0.11
Consensus pattern (24 bp):
GAAAGCTGTAAAGGCTGAAAAGCA
Found at i:50671264 original size:27 final size:27
Alignment explanation
Indices: 50671234--50671396 Score: 125
Period size: 27 Copynumber: 6.0 Consensus size: 27
50671224 CCTTGTAAGG
*
50671234 TAAAATAACTGTTTTTCCCTTATGTGA
1 TAAAATAACTGTTTTGCCCTTATGTGA
*
50671261 TAAAA-AGAC-GATTTTGCCTTTATGTGGA
1 TAAAATA-ACTG-TTTTGCCCTTATGT-GA
* * * *
50671289 -AAAATGACTATTTTACCCTTATGTGT
1 TAAAATAACTGTTTTGCCCTTATGTGA
* * **
50671315 TAAAATAACAGTTTTGTCCTTATGAAA
1 TAAAATAACTGTTTTGCCCTTATGTGA
* * *
50671342 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATAACTGTTTTGCCCTTATGTGA
** * *
50671369 TAGGATGACTGTTTTGCCCCTATGTGA
1 TAAAATAACTGTTTTGCCCTTATGTGA
50671396 T
1 T
50671397 GTATGTTTAT
Statistics
Matches: 103, Mismatches: 27, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
26 3 0.03
27 98 0.95
28 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (27 bp):
TAAAATAACTGTTTTGCCCTTATGTGA
Done.